AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0759120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759120 MtrunA17_Chr5g0405991 97.468 316 8 0 1 316 1 316 0.0 639
Msa0759120 MtrunA17_Chr8g0371381 78.667 300 64 0 17 316 20 319 0.0 508
Msa0759120 MtrunA17_Chr1g0157051 69.579 309 93 1 8 315 9 317 1.74e-158 445
Msa0759120 MtrunA17_Chr1g0204011 56.230 313 134 2 7 316 10 322 1.43e-126 364
Msa0759120 MtrunA17_Chr1g0188431 45.370 324 158 4 3 316 13 327 4.00e-100 297
Msa0759120 MtrunA17_Chr6g0477071 44.136 324 164 4 1 316 28 342 3.06e-92 278
Msa0759120 MtrunA17_Chr7g0268501 46.372 317 152 8 10 316 12 320 4.28e-91 274
Msa0759120 MtrunA17_Chr7g0268521 46.372 317 152 8 10 316 12 320 4.28e-91 274
Msa0759120 MtrunA17_Chr3g0128061 45.768 319 164 5 6 316 9 326 3.74e-90 272
Msa0759120 MtrunA17_Chr4g0024121 46.541 318 158 6 8 316 12 326 6.04e-90 271
Msa0759120 MtrunA17_Chr2g0322861 46.875 320 156 8 7 316 71 386 7.39e-88 268
Msa0759120 MtrunA17_Chr2g0279041 42.812 313 169 3 10 315 11 320 1.61e-86 263
Msa0759120 MtrunA17_Chr1g0194151 44.688 320 164 9 10 316 14 333 1.58e-81 250
Msa0759120 MtrunA17_Chr5g0402571 41.875 320 178 5 3 316 9 326 1.05e-80 248
Msa0759120 MtrunA17_Chr2g0292211 41.692 331 171 9 2 316 17 341 5.19e-80 247
Msa0759120 MtrunA17_Chr4g0068621 40.828 338 176 7 1 316 1 336 1.64e-79 245
Msa0759120 MtrunA17_Chr5g0404721 44.079 304 163 5 20 316 27 330 2.11e-79 244
Msa0759120 MtrunA17_Chr7g0254201 43.189 301 156 6 23 316 20 312 2.22e-79 244
Msa0759120 MtrunA17_Chr5g0402581 41.801 311 175 4 12 316 16 326 2.85e-79 244
Msa0759120 MtrunA17_Chr1g0175561 40.683 322 177 10 5 316 9 326 4.47e-79 243
Msa0759120 MtrunA17_Chr1g0194271 43.027 337 171 10 1 316 4 340 1.52e-78 243
Msa0759120 MtrunA17_Chr4g0063671 40.798 326 177 7 1 316 1 320 4.33e-78 241
Msa0759120 MtrunA17_Chr2g0299691 42.462 325 169 9 4 316 40 358 5.55e-78 242
Msa0759120 MtrunA17_Chr7g0225221 40.867 323 176 9 3 316 4 320 7.20e-78 240
Msa0759120 MtrunA17_Chr7g0258811 41.325 317 174 9 11 316 56 371 7.26e-78 242
Msa0759120 MtrunA17_Chr2g0291751 41.104 326 179 9 3 316 6 330 1.19e-77 241
Msa0759120 MtrunA17_Chr2g0292091 41.776 304 165 7 23 316 24 325 2.08e-77 240
Msa0759120 MtrunA17_Chr2g0292241 40.184 326 183 8 2 316 6 330 2.17e-77 240
Msa0759120 MtrunA17_Chr3g0106921 40.498 321 174 8 6 316 7 320 1.24e-76 237
Msa0759120 MtrunA17_Chr2g0292271 39.938 323 182 8 5 316 9 330 1.56e-76 238
Msa0759120 MtrunA17_Chr3g0129051 40.439 319 167 7 10 316 15 322 2.73e-76 236
Msa0759120 MtrunA17_Chr5g0401431 40.615 325 178 7 3 315 7 328 3.45e-76 236
Msa0759120 MtrunA17_Chr2g0320101 39.506 324 181 5 1 316 1 317 4.90e-76 235
Msa0759120 MtrunA17_Chr4g0013171 41.379 319 171 8 7 316 10 321 5.59e-76 235
Msa0759120 MtrunA17_Chr2g0292251 40.909 308 172 7 18 316 23 329 9.65e-76 236
Msa0759120 MtrunA17_Chr2g0320071 39.877 326 174 6 4 316 1 317 1.83e-75 234
Msa0759120 MtrunA17_Chr3g0114451 41.742 333 162 9 1 316 1 318 2.25e-75 234
Msa0759120 MtrunA17_Chr4g0072091 43.421 304 158 8 23 316 24 323 2.88e-75 234
Msa0759120 MtrunA17_Chr2g0320091 39.755 327 174 7 4 316 1 318 3.01e-75 233
Msa0759120 MtrunA17_Chr8g0372601 42.434 304 168 5 20 316 27 330 5.57e-75 233
Msa0759120 MtrunA17_Chr1g0164891 43.709 302 160 7 25 316 91 392 7.59e-75 235
Msa0759120 MtrunA17_Chr4g0053871 40.994 322 170 8 3 312 7 320 9.27e-75 232
Msa0759120 MtrunA17_Chr4g0070951 41.925 322 172 8 7 316 11 329 1.80e-74 232
Msa0759120 MtrunA17_Chr2g0292151 39.692 325 184 8 3 316 7 330 4.94e-74 231
Msa0759120 MtrunA17_Chr1g0148021 43.092 304 161 8 23 316 27 328 5.70e-74 230
Msa0759120 MtrunA17_Chr4g0013721 40.850 306 176 4 15 316 92 396 6.19e-74 233
Msa0759120 MtrunA17_Chr2g0292111 39.264 326 186 8 2 316 6 330 1.00e-73 231
Msa0759120 MtrunA17_Chr4g0013181 43.144 299 155 7 26 316 62 353 3.81e-73 229
Msa0759120 MtrunA17_Chr2g0320031 38.720 328 180 7 1 316 1 319 4.41e-73 228
Msa0759120 MtrunA17_Chr1g0155611 43.279 305 159 7 23 316 46 347 1.18e-72 228
Msa0759120 MtrunA17_Chr2g0292261 39.617 313 169 8 18 316 24 330 2.17e-72 227
Msa0759120 MtrunA17_Chr1g0197411 39.571 326 185 8 1 316 7 330 2.44e-72 226
Msa0759120 MtrunA17_Chr2g0292181 40.584 308 173 7 18 316 33 339 2.46e-72 227
Msa0759120 MtrunA17_Chr5g0400331 42.574 303 160 7 27 316 30 331 3.42e-72 226
Msa0759120 MtrunA17_Chr7g0254231 38.926 298 170 6 23 316 22 311 4.64e-72 225
Msa0759120 MtrunA17_Chr6g0460711 37.179 312 186 6 10 316 8 314 5.72e-72 225
Msa0759120 MtrunA17_Chr4g0013821 40.063 317 184 5 4 316 10 324 6.12e-72 226
Msa0759120 MtrunA17_Chr7g0224371 40.063 317 175 9 7 316 14 322 1.06e-71 224
Msa0759120 MtrunA17_Chr5g0438021 39.441 322 179 7 3 316 12 325 1.17e-71 224
Msa0759120 MtrunA17_Chr5g0421411 44.161 274 140 7 55 316 13 285 1.26e-71 223
Msa0759120 MtrunA17_Chr2g0292101 40.594 303 170 7 23 316 25 326 1.81e-71 224
Msa0759120 MtrunA17_Chr2g0329641 38.507 335 182 8 3 316 4 335 2.80e-70 221
Msa0759120 MtrunA17_Chr3g0136751 39.252 321 182 7 4 316 7 322 6.54e-70 220
Msa0759120 MtrunA17_Chr2g0296621 40.728 302 161 5 23 316 50 341 7.45e-70 220
Msa0759120 MtrunA17_Chr1g0213061 38.941 321 179 8 6 316 8 321 7.47e-70 220
Msa0759120 MtrunA17_Chr2g0320061 38.532 327 181 7 1 316 1 318 8.00e-70 219
Msa0759120 MtrunA17_Chr2g0320051 38.679 318 176 7 8 316 11 318 1.51e-69 219
Msa0759120 MtrunA17_Chr7g0244461 38.462 312 179 4 11 316 8 312 1.57e-69 219
Msa0759120 MtrunA17_Chr4g0038151 36.562 320 194 5 3 316 5 321 1.64e-69 219
Msa0759120 MtrunA17_Chr8g0364291 39.677 310 171 6 19 316 19 324 1.82e-69 219
Msa0759120 MtrunA17_Chr5g0432441 39.117 317 176 5 10 316 17 326 3.21e-69 218
Msa0759120 MtrunA17_Chr4g0046131 40.328 305 167 7 21 312 40 342 4.56e-69 218
Msa0759120 MtrunA17_Chr2g0292291 39.286 308 178 6 18 316 25 332 2.99e-68 216
Msa0759120 MtrunA17_Chr6g0451571 40.439 319 177 8 7 316 20 334 4.21e-68 216
Msa0759120 MtrunA17_Chr3g0129061 39.877 326 171 8 3 316 10 322 4.39e-68 215
Msa0759120 MtrunA17_Chr4g0043391 36.760 321 192 7 3 316 8 324 4.96e-68 215
Msa0759120 MtrunA17_Chr4g0076211 41.000 300 162 5 24 316 42 333 5.26e-68 215
Msa0759120 MtrunA17_Chr7g0244451 38.700 323 184 5 1 316 1 316 1.48e-67 214
Msa0759120 MtrunA17_Chr6g0467161 38.614 303 170 7 21 316 43 336 4.74e-67 213
Msa0759120 MtrunA17_Chr5g0432351 39.938 323 173 9 7 316 7 321 1.29e-66 211
Msa0759120 MtrunA17_Chr5g0432331 41.231 325 161 10 12 316 38 352 1.40e-66 212
Msa0759120 MtrunA17_Chr5g0432341 39.514 329 178 9 1 316 1 321 1.95e-66 211
Msa0759120 MtrunA17_Chr4g0038161 36.250 320 194 6 3 316 5 320 3.72e-66 210
Msa0759120 MtrunA17_Chr2g0279061 43.478 253 136 2 67 315 12 261 5.28e-66 208
Msa0759120 MtrunA17_Chr3g0129041 40.810 321 162 9 12 316 14 322 7.05e-66 209
Msa0759120 MtrunA17_Chr6g0467121 39.735 302 166 6 21 316 72 363 7.13e-66 211
Msa0759120 MtrunA17_Chr4g0013201 40.000 300 167 6 23 316 46 338 1.16e-65 209
Msa0759120 MtrunA17_Chr4g0038171 36.137 321 194 7 3 316 5 321 2.84e-65 208
Msa0759120 MtrunA17_Chr6g0467251 38.127 299 170 6 21 312 34 324 1.52e-64 207
Msa0759120 MtrunA17_Chr4g0075241 36.184 304 185 5 20 316 26 327 1.83e-64 206
Msa0759120 MtrunA17_Chr3g0106901 40.312 320 171 9 7 316 14 323 5.96e-63 202
Msa0759120 MtrunA17_Chr4g0013191 37.168 339 181 9 4 316 8 340 1.34e-60 196
Msa0759120 MtrunA17_Chr3g0107881 38.871 319 175 8 10 316 14 324 6.63e-59 192
Msa0759120 MtrunA17_Chr2g0316481 34.821 336 182 7 17 315 70 405 2.50e-58 192
Msa0759120 MtrunA17_Chr2g0316791 35.417 336 180 7 17 315 70 405 1.09e-57 191
Msa0759120 MtrunA17_Chr2g0316831 34.821 336 182 7 17 315 106 441 2.29e-57 191
Msa0759120 MtrunA17_Chr2g0278671 37.762 286 168 5 23 302 24 305 4.57e-57 187
Msa0759120 MtrunA17_Chr2g0316191 34.718 337 182 7 17 315 70 406 1.26e-56 188
Msa0759120 MtrunA17_Chr1g0181511 37.255 306 178 6 20 316 23 323 2.83e-55 182
Msa0759120 MtrunA17_Chr2g0311251 34.226 336 183 7 17 315 5 339 3.20e-54 180
Msa0759120 MtrunA17_Chr5g0413051 33.333 309 187 7 23 316 73 377 9.99e-53 177
Msa0759120 MtrunA17_Chr1g0181431 35.484 310 171 6 23 316 27 323 3.70e-52 174
Msa0759120 MtrunA17_Chr5g0432401 35.185 324 152 9 3 315 9 285 1.00e-51 172
Msa0759120 MtrunA17_Chr1g0181481 35.350 314 173 7 20 316 23 323 1.08e-50 170
Msa0759120 MtrunA17_Chr2g0311241 30.769 377 182 7 17 315 54 429 2.33e-50 172
Msa0759120 MtrunA17_Chr4g0074851 33.542 319 183 5 10 312 19 324 2.37e-50 170
Msa0759120 MtrunA17_Chr4g0004591 30.721 319 155 6 23 315 77 355 1.25e-43 153
Msa0759120 MtrunA17_Chr2g0316811 36.032 247 138 5 17 245 44 288 7.53e-42 147
Msa0759120 MtrunA17_Chr2g0292281 40.000 210 109 6 114 316 17 216 1.93e-41 144
Msa0759120 MtrunA17_Chr3g0114461 39.899 198 90 8 133 316 10 192 8.08e-37 130
Msa0759120 MtrunA17_Chr2g0316141 32.982 285 135 9 69 315 11 277 3.00e-33 124
Msa0759120 MtrunA17_Chr2g0316181 32.982 285 135 9 69 315 11 277 3.00e-33 124
Msa0759120 MtrunA17_Chr3g0114491 49.074 108 54 1 23 129 18 125 1.06e-26 102
Msa0759120 MtrunA17_Chr7g0254181 43.119 109 60 1 78 186 15 121 4.88e-23 93.2
Msa0759120 MtrunA17_Chr6g0468731 61.429 70 24 1 62 131 22 88 2.45e-22 89.4
Msa0759120 MtrunA17_Chr3g0104101 40.141 142 74 5 185 316 9 149 2.51e-22 91.3
Msa0759120 MtrunA17_Chr1g0196191 50.575 87 33 1 53 129 5 91 2.17e-19 83.6
Msa0759120 MtrunA17_Chr3g0137751 27.719 285 133 12 36 305 88 314 2.43e-19 87.0
Msa0759120 MtrunA17_Chr1g0181501 32.292 192 116 7 133 316 4 189 2.97e-19 84.0
Msa0759120 MtrunA17_Chr5g0432321 37.097 124 69 3 143 265 17 132 4.34e-19 82.0
Msa0759120 MtrunA17_Chr7g0254171 47.945 73 38 0 68 140 3 75 1.83e-18 80.5
Msa0759120 MtrunA17_Chr1g0181491 40.187 107 63 1 23 129 12 117 1.34e-17 78.2
Msa0759120 MtrunA17_Chr7g0268491 42.500 80 37 3 243 316 21 97 4.00e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759120 AT5G42180.1 66.667 312 101 2 7 315 5 316 1.15e-154 436
Msa0759120 AT5G51890.1 56.962 316 129 3 8 316 7 322 6.52e-129 370
Msa0759120 AT4G33420.1 45.741 317 157 5 4 316 20 325 2.67e-95 285
Msa0759120 AT4G33420.2 45.741 317 157 5 4 316 67 372 1.67e-94 285
Msa0759120 AT1G05260.1 45.679 324 163 8 1 316 7 325 6.42e-91 274
Msa0759120 AT4G11290.1 43.302 321 173 6 5 316 6 326 1.58e-88 268
Msa0759120 AT3G21770.1 46.801 297 148 6 12 302 18 310 6.41e-88 266
Msa0759120 AT5G15180.1 45.342 322 161 8 7 316 11 329 6.92e-88 266
Msa0759120 AT4G36430.1 44.951 307 160 6 18 316 25 330 9.44e-87 264
Msa0759120 AT3G01190.1 44.688 320 166 8 3 316 7 321 3.33e-86 262
Msa0759120 AT2G39040.1 47.712 306 147 7 23 316 46 350 3.80e-84 258
Msa0759120 AT1G05240.1 46.179 301 146 8 23 312 26 321 3.52e-83 254
Msa0759120 AT1G05250.1 46.179 301 146 8 23 312 26 321 3.52e-83 254
Msa0759120 AT2G18150.1 43.098 297 162 4 27 316 40 336 6.57e-82 251
Msa0759120 AT1G71695.1 45.395 304 152 6 21 316 42 339 1.11e-81 251
Msa0759120 AT4G16270.1 44.884 303 154 7 23 316 50 348 1.56e-81 251
Msa0759120 AT2G18140.1 43.564 303 164 4 21 316 33 335 2.44e-81 250
Msa0759120 AT4G31760.1 40.379 317 173 6 10 316 16 326 2.49e-81 249
Msa0759120 AT2G41480.1 42.900 331 171 7 1 316 1 328 4.44e-80 246
Msa0759120 AT5G06720.1 40.557 323 176 8 7 316 14 333 1.27e-79 246
Msa0759120 AT5G14130.1 41.925 322 176 7 3 316 12 330 1.79e-79 245
Msa0759120 AT5G14130.2 41.925 322 176 7 3 316 53 371 5.82e-79 245
Msa0759120 AT5G66390.1 40.938 320 182 4 4 316 14 333 1.08e-78 243
Msa0759120 AT3G03670.1 37.383 321 194 3 1 316 3 321 2.20e-78 242
Msa0759120 AT5G39580.1 41.284 327 173 10 1 316 1 319 2.21e-78 242
Msa0759120 AT2G18980.1 41.509 318 169 8 10 316 12 323 1.01e-77 240
Msa0759120 AT4G37530.1 42.484 306 161 7 23 316 27 329 4.30e-77 239
Msa0759120 AT3G49960.1 41.231 325 178 7 4 316 6 329 4.59e-77 239
Msa0759120 AT5G64120.1 39.394 330 178 10 1 316 7 328 1.27e-76 238
Msa0759120 AT5G19890.1 44.371 302 156 6 23 316 30 327 1.63e-76 237
Msa0759120 AT3G50990.1 40.248 323 183 5 4 316 19 341 2.36e-76 238
Msa0759120 AT4G30170.1 41.639 305 161 8 23 316 27 325 2.45e-76 237
Msa0759120 AT5G67400.1 42.025 326 174 7 3 316 7 329 4.86e-76 236
Msa0759120 AT1G44970.1 44.000 300 156 5 27 316 49 346 7.97e-76 236
Msa0759120 AT5G06730.1 38.629 321 185 7 7 316 15 334 3.49e-75 235
Msa0759120 AT5G17820.1 38.801 317 177 7 7 316 7 313 4.53e-75 233
Msa0759120 AT1G68850.1 40.373 322 176 9 10 316 15 335 7.77e-75 233
Msa0759120 AT2G24800.1 41.967 305 160 7 23 316 31 329 8.82e-75 233
Msa0759120 AT4G37520.1 42.157 306 162 7 23 316 27 329 1.67e-74 232
Msa0759120 AT2G22420.1 38.125 320 193 4 1 316 1 319 4.57e-74 231
Msa0759120 AT4G08770.1 43.607 305 160 8 23 316 24 327 8.59e-74 231
Msa0759120 AT5G05340.1 41.311 305 158 7 23 316 30 324 9.25e-74 230
Msa0759120 AT5G17820.2 38.801 317 177 7 7 316 60 366 9.53e-74 231
Msa0759120 AT2G38380.1 41.830 306 163 9 23 316 31 333 6.32e-72 226
Msa0759120 AT4G37520.2 41.503 306 161 8 23 316 27 326 1.50e-71 224
Msa0759120 AT4G17690.1 41.914 303 163 6 22 316 25 322 1.69e-71 224
Msa0759120 AT4G08780.1 42.295 305 164 8 23 316 24 327 2.05e-71 225
Msa0759120 AT2G38390.1 37.963 324 192 6 2 316 10 333 5.65e-71 224
Msa0759120 AT3G32980.1 39.688 320 180 9 8 316 17 334 2.25e-70 222
Msa0759120 AT4G37530.2 45.059 253 132 5 23 269 27 278 6.79e-70 219
Msa0759120 AT5G64100.1 39.344 305 160 8 25 316 39 331 1.21e-69 220
Msa0759120 AT4G26010.1 38.558 319 176 6 5 316 4 309 1.53e-69 219
Msa0759120 AT2G35380.1 39.697 330 178 11 6 316 8 335 1.62e-69 219
Msa0759120 AT3G49120.1 40.656 305 169 8 23 316 32 335 3.54e-69 219
Msa0759120 AT4G26010.2 38.558 319 176 6 5 316 32 337 4.12e-69 219
Msa0759120 AT5G40150.1 41.368 307 157 8 23 316 32 328 7.81e-69 218
Msa0759120 AT1G14550.1 41.447 304 160 8 23 316 26 321 7.90e-69 218
Msa0759120 AT1G30870.1 40.397 302 165 6 23 316 51 345 1.23e-68 218
Msa0759120 AT5G19880.1 40.252 318 176 10 11 316 14 329 1.31e-68 217
Msa0759120 AT5G64110.1 40.404 297 166 5 27 316 38 330 4.17e-68 216
Msa0759120 AT3G28200.1 40.728 302 165 6 23 316 21 316 3.62e-67 213
Msa0759120 AT1G49570.1 41.379 290 163 5 20 302 43 332 4.61e-67 214
Msa0759120 AT5G47000.1 37.654 324 185 7 4 316 13 330 3.77e-66 211
Msa0759120 AT4G33870.1 37.237 333 167 5 23 314 68 399 1.55e-65 211
Msa0759120 AT1G14540.1 36.503 326 183 10 4 316 1 315 1.81e-65 209
Msa0759120 AT1G34510.1 37.421 318 181 6 5 316 4 309 9.35e-65 206
Msa0759120 AT3G49110.1 39.016 305 174 8 23 316 33 336 1.96e-64 207
Msa0759120 AT2G34060.1 38.436 307 172 7 21 313 40 343 2.10e-64 207
Msa0759120 AT5G58400.1 37.771 323 180 9 6 316 12 325 5.24e-64 205
Msa0759120 AT5G22410.1 35.976 328 189 10 1 313 1 322 9.46e-64 204
Msa0759120 AT5G58390.1 39.009 323 176 9 5 316 4 316 1.85e-63 203
Msa0759120 AT2G43480.1 36.578 339 188 9 1 316 1 335 4.93e-63 203
Msa0759120 AT1G24110.1 37.342 316 187 7 10 316 9 322 1.90e-61 199
Msa0759120 AT5G24070.1 35.410 305 182 7 23 316 35 335 3.22e-61 198
Msa0759120 AT4G25980.1 34.483 319 195 6 8 316 12 326 2.27e-59 193
Msa0759120 AT3G17070.1 34.472 322 203 5 3 316 18 339 4.11e-58 190
Msa0759120 AT1G77100.1 36.086 327 190 10 1 316 1 319 5.60e-53 176
Msa0759120 AT5G39580.2 46.392 194 97 3 2 195 8 194 6.03e-52 171
Msa0759120 AT2G37130.1 34.405 311 174 7 23 316 30 327 7.20e-50 169
Msa0759120 AT2G37130.2 34.304 309 173 7 25 316 1 296 1.64e-49 167
Msa0759120 AT4G21960.1 32.836 335 192 6 2 316 6 327 1.28e-48 166
Msa0759120 AT2G35380.2 40.486 247 131 10 84 316 3 247 3.73e-47 159
Msa0759120 AT2G24800.2 49.123 171 81 3 23 192 31 196 1.67e-46 157
Msa0759120 AT4G25980.2 42.162 185 104 2 8 192 57 238 1.75e-46 159
Msa0759120 AT3G17070.2 33.846 260 163 6 65 316 18 276 3.63e-42 147
Msa0759120 AT4G35970.1 29.825 285 136 10 34 303 6 241 3.11e-18 83.6
Msa0759120 AT4G32320.1 28.302 265 120 10 55 305 115 323 1.14e-16 79.7
Msa0759120 AT4G35970.2 29.545 264 122 10 34 282 6 220 3.52e-14 70.9
Msa0759120 AT3G42570.1 34.286 105 67 1 84 186 43 147 1.06e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTTCAACTAAATTA+AGG 0.230530 5_2:+14672914 None:intergenic
GAAACCAATTGCTTGGTCTT+TGG 0.238144 5_2:+14673056 None:intergenic
AAACCAATTGCTTGGTCTTT+GGG 0.281172 5_2:+14673057 None:intergenic
AGTTAACGAACTGGTCTTCT+AGG 0.304546 5_2:-14674376 None:intergenic
CATGTGTAGCATTAAAGTTT+TGG 0.328425 5_2:+14673264 None:intergenic
AATGCATGCAATGAAATATT+TGG 0.334518 5_2:+14673849 None:intergenic
TTGTCTTGTTTCACTGGCCT+TGG 0.339540 5_2:+14673525 None:intergenic
TACAGTCTGGAGGACCTAAA+TGG 0.359036 5_2:-14673582 Msa0759120:intron
AGCAAGGGACGCAGTTTATC+TGG 0.362051 5_2:-14673745 Msa0759120:intron
TGGTAATTGTCTTGTTTCAC+TGG 0.384054 5_2:+14673519 None:intergenic
CAGCCCAAAGACCAAGCAAT+TGG 0.410084 5_2:-14673060 Msa0759120:CDS
TCAATGGTGGGCAAGAAGTT+AGG 0.414717 5_2:-14672965 Msa0759120:CDS
TGATAAATCATGCCATGATC+TGG 0.415842 5_2:-14674155 Msa0759120:CDS
AGCAATCATGGAAGTGCATT+CGG 0.445468 5_2:+14674065 None:intergenic
AAGAAAACAAGCCTTCTTGT+TGG 0.450973 5_2:+14673102 None:intergenic
GAAATCAAAGATGAATTCAA+TGG 0.460643 5_2:+14674307 None:intergenic
CTATGGTAGCAAACATTTGT+TGG 0.463780 5_2:+14672567 None:intergenic
AAATCACCACTTTGAGAAGC+AGG 0.467778 5_2:+14672639 None:intergenic
TAAGTTTGCCGCCTCACAAA+AGG 0.470132 5_2:-14673033 Msa0759120:CDS
GTTCCAAAAGGAAGAAAAGA+TGG 0.475939 5_2:-14673556 Msa0759120:CDS
GAAGACCTGGTAGCTCTGTC+AGG 0.477249 5_2:-14673436 Msa0759120:intron
AAATAATATACTCCAGATCA+TGG 0.488942 5_2:+14674143 None:intergenic
TGCATTCGGAGAAGTGCTGC+TGG 0.491913 5_2:+14674079 None:intergenic
ATACTCGAACGAAGCAATCA+TGG 0.494818 5_2:+14674053 None:intergenic
AAATCAAAGATGAATTCAAT+GGG 0.496106 5_2:+14674308 None:intergenic
AAAACAAGCCTTCTTGTTGG+AGG 0.496873 5_2:+14673105 None:intergenic
AAACTTAGAAACCAATTGCT+TGG 0.500113 5_2:+14673049 None:intergenic
TCTGTGCTGCTAAATTCAAA+AGG 0.503397 5_2:-14673900 Msa0759120:CDS
CTTAATTGACATGGCTGTCA+TGG 0.507039 5_2:-14674248 Msa0759120:exon
TTATCGAAATTTGTTGCAGA+AGG 0.514459 5_2:+14673146 None:intergenic
TCAGCACAAGAAACTACGCC+AGG 0.522780 5_2:+14673783 None:intergenic
CCTAAATGGAATGTTCCAAA+AGG 0.523518 5_2:-14673568 Msa0759120:CDS
TATGTAGGAGGGCATACCTT+AGG 0.527648 5_2:-14673320 Msa0759120:intron
AGCATTGTCAGTGGAAGACC+TGG 0.541171 5_2:-14673449 Msa0759120:CDS
ACGAGCCCTGCTTCTCAAAG+TGG 0.542013 5_2:-14672645 Msa0759120:three_prime_UTR
GCATTAGAAGCTAAATGCCC+TGG 0.544431 5_2:-14673801 Msa0759120:CDS
GCAAACGATTGATGTAATGA+AGG 0.545643 5_2:+14673233 None:intergenic
CTGTGAAGGATGCTACTGCT+AGG 0.556569 5_2:-14674114 Msa0759120:CDS
CTTTAATGCTACACATGACG+TGG 0.559892 5_2:-14673258 Msa0759120:CDS
GTTAACGAACTGGTCTTCTA+GGG 0.562159 5_2:-14674375 None:intergenic
AAATTGATCCTCCAACAAGA+AGG 0.562255 5_2:-14673113 Msa0759120:CDS
CTTTGAGAAGCAGGGCTCGT+GGG 0.564974 5_2:+14672648 None:intergenic
TATTCTCGCTCTCGCAGCAA+GGG 0.565246 5_2:-14673760 Msa0759120:CDS
AGTTGTGATATGTTGAATGT+TGG 0.566339 5_2:+14673493 None:intergenic
ACTTTGAGAAGCAGGGCTCG+TGG 0.568773 5_2:+14672647 None:intergenic
GATATGTTGAATGTTGGTGC+TGG 0.579055 5_2:+14673499 None:intergenic
TGTGAAGGATGCTACTGCTA+GGG 0.598284 5_2:-14674113 Msa0759120:CDS
ATATTCTCGCTCTCGCAGCA+AGG 0.601121 5_2:-14673761 Msa0759120:CDS
CTCTCAAAGAGCATTGTCAG+TGG 0.611421 5_2:-14673458 Msa0759120:CDS
CAAACGATTGATGTAATGAA+GGG 0.613974 5_2:+14673234 None:intergenic
GCATGCAATGAAATATTTGG+TGG 0.618992 5_2:+14673852 None:intergenic
TGGTGGGCAAGAAGTTAGGA+AGG 0.619256 5_2:-14672961 Msa0759120:CDS
AAAAGATGGAAGAACATCCA+AGG 0.622128 5_2:-14673542 Msa0759120:CDS
AATTATTAGATGAGATAATG+TGG 0.623762 5_2:+14674352 None:intergenic
GAATACCTGACAGAGCTACC+AGG 0.624282 5_2:+14673431 None:intergenic
TGAGCAGTGAGAGAAGCCTA+AGG 0.624872 5_2:+14673304 None:intergenic
AAATGAGTAGCATCAATGGT+GGG 0.625299 5_2:-14672977 Msa0759120:CDS
AATCACCACTTTGAGAAGCA+GGG 0.627172 5_2:+14672640 None:intergenic
AAAATGAGTAGCATCAATGG+TGG 0.631742 5_2:-14672978 Msa0759120:CDS
TGTTGCAGAAGGATCCATAG+TGG 0.631760 5_2:+14673157 None:intergenic
AAAAGTACTCTTAATTGACA+TGG 0.635235 5_2:-14674257 Msa0759120:exon
ATGTATATTCTACAGTCTGG+AGG 0.635741 5_2:-14673592 Msa0759120:intron
TATCGGTCTTGTCAAGAACA+TGG 0.635885 5_2:-14672590 Msa0759120:three_prime_UTR
CAGCACAAGAAACTACGCCA+GGG 0.694829 5_2:+14673784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACTTCAACTAAATTA+AGG + chr5_2:14674034-14674053 None:intergenic 15.0%
!! AATTAACTTCAACTAAATTA+AGG + chr5_2:14674034-14674053 None:intergenic 15.0%
!! AATTATTAGATGAGATAATG+TGG + chr5_2:14672596-14672615 None:intergenic 20.0%
!! AAATCAAAGATGAATTCAAT+GGG + chr5_2:14672640-14672659 None:intergenic 20.0%
!!! TTTGATTATCATTTTTTCAG+TGG - chr5_2:14672733-14672752 Msa0759120:intron 20.0%
!! TGAATAATCAAATGTATAGA+TGG + chr5_2:14672978-14672997 None:intergenic 20.0%
!!! TTTTTTTCCTATACTTTTGA+AGG - chr5_2:14673011-14673030 Msa0759120:CDS 20.0%
!!! TTTTTTCCTATACTTTTGAA+GGG - chr5_2:14673012-14673031 Msa0759120:CDS 20.0%
!!! AAGTTTTAACTGATAAATGA+TGG - chr5_2:14673323-14673342 Msa0759120:intron 20.0%
!!! TTTTTGCAGTTTTTAACTTT+AGG + chr5_2:14673539-14673558 None:intergenic 20.0%
!! AAATTGGAAAACATGAAAAA+TGG + chr5_2:14673567-14673586 None:intergenic 20.0%
!!! TTTTCCAATTTATATCTGAA+TGG - chr5_2:14673576-14673595 Msa0759120:CDS 20.0%
!! AATTTGTCTGTTGAAAAATA+AGG - chr5_2:14673750-14673769 Msa0759120:CDS 20.0%
!!! TTTTCACACAATAATTTTTC+TGG + chr5_2:14674065-14674084 None:intergenic 20.0%
!! AAAAATTATTGTGTGAAAAG+TGG - chr5_2:14674066-14674085 Msa0759120:CDS 20.0%
!! AATTATTAGATGAGATAATG+TGG + chr5_2:14672596-14672615 None:intergenic 20.0%
!! AAATCAAAGATGAATTCAAT+GGG + chr5_2:14672640-14672659 None:intergenic 20.0%
!!! TTTGATTATCATTTTTTCAG+TGG - chr5_2:14672733-14672752 Msa0759120:intron 20.0%
!! TGAATAATCAAATGTATAGA+TGG + chr5_2:14672978-14672997 None:intergenic 20.0%
!!! TTTTTTTCCTATACTTTTGA+AGG - chr5_2:14673011-14673030 Msa0759120:CDS 20.0%
!!! TTTTTTCCTATACTTTTGAA+GGG - chr5_2:14673012-14673031 Msa0759120:CDS 20.0%
!!! AAGTTTTAACTGATAAATGA+TGG - chr5_2:14673323-14673342 Msa0759120:intron 20.0%
!!! TTTTTGCAGTTTTTAACTTT+AGG + chr5_2:14673539-14673558 None:intergenic 20.0%
!! AAATTGGAAAACATGAAAAA+TGG + chr5_2:14673567-14673586 None:intergenic 20.0%
!!! TTTTCCAATTTATATCTGAA+TGG - chr5_2:14673576-14673595 Msa0759120:CDS 20.0%
!! AATTTGTCTGTTGAAAAATA+AGG - chr5_2:14673750-14673769 Msa0759120:CDS 20.0%
!!! TTTTCACACAATAATTTTTC+TGG + chr5_2:14674065-14674084 None:intergenic 20.0%
!! AAAAATTATTGTGTGAAAAG+TGG - chr5_2:14674066-14674085 Msa0759120:CDS 20.0%
!!! AATTCAATGGGTTTTTAAAG+GGG + chr5_2:14672628-14672647 None:intergenic 25.0%
!!! GAATTCAATGGGTTTTTAAA+GGG + chr5_2:14672629-14672648 None:intergenic 25.0%
!!! TGAATTCAATGGGTTTTTAA+AGG + chr5_2:14672630-14672649 None:intergenic 25.0%
! GAAATCAAAGATGAATTCAA+TGG + chr5_2:14672641-14672660 None:intergenic 25.0%
!!! AAAAGTACTCTTAATTGACA+TGG - chr5_2:14672688-14672707 Msa0759120:intron 25.0%
! AAATAATATACTCCAGATCA+TGG + chr5_2:14672805-14672824 None:intergenic 25.0%
!!! TATTATTTTGAAGACTGTGA+AGG - chr5_2:14672817-14672836 Msa0759120:three_prime_UTR 25.0%
! AAAAACAATGTCAAGAAGAA+AGG + chr5_2:14672932-14672951 None:intergenic 25.0%
!!! TTTTTCCTATACTTTTGAAG+GGG - chr5_2:14673013-14673032 Msa0759120:CDS 25.0%
! AATGCATGCAATGAAATATT+TGG + chr5_2:14673099-14673118 None:intergenic 25.0%
! AACTCCATTCAGATATAAAT+TGG + chr5_2:14673583-14673602 None:intergenic 25.0%
! ATAAAAATGAGTAGCATCAA+TGG - chr5_2:14673964-14673983 Msa0759120:intron 25.0%
! ATAAAAATTCAAGCTTGTCT+TGG - chr5_2:14674202-14674221 Msa0759120:CDS 25.0%
!!! AATTCAATGGGTTTTTAAAG+GGG + chr5_2:14672628-14672647 None:intergenic 25.0%
!!! GAATTCAATGGGTTTTTAAA+GGG + chr5_2:14672629-14672648 None:intergenic 25.0%
!!! TGAATTCAATGGGTTTTTAA+AGG + chr5_2:14672630-14672649 None:intergenic 25.0%
! GAAATCAAAGATGAATTCAA+TGG + chr5_2:14672641-14672660 None:intergenic 25.0%
!!! AAAAGTACTCTTAATTGACA+TGG - chr5_2:14672688-14672707 Msa0759120:intron 25.0%
! AAATAATATACTCCAGATCA+TGG + chr5_2:14672805-14672824 None:intergenic 25.0%
!!! TATTATTTTGAAGACTGTGA+AGG - chr5_2:14672817-14672836 Msa0759120:three_prime_UTR 25.0%
! AAAAACAATGTCAAGAAGAA+AGG + chr5_2:14672932-14672951 None:intergenic 25.0%
!!! TTTTTCCTATACTTTTGAAG+GGG - chr5_2:14673013-14673032 Msa0759120:CDS 25.0%
! AATGCATGCAATGAAATATT+TGG + chr5_2:14673099-14673118 None:intergenic 25.0%
! AACTCCATTCAGATATAAAT+TGG + chr5_2:14673583-14673602 None:intergenic 25.0%
! ATAAAAATGAGTAGCATCAA+TGG - chr5_2:14673964-14673983 Msa0759120:intron 25.0%
! ATAAAAATTCAAGCTTGTCT+TGG - chr5_2:14674202-14674221 Msa0759120:CDS 25.0%
!!! ATTTTTTCAGTGGTTTCTAC+AGG - chr5_2:14672743-14672762 Msa0759120:intron 30.0%
TCAAATGTATAGATGGTTTG+CGG + chr5_2:14672971-14672990 None:intergenic 30.0%
AGGAAAAAACAAAGCAGAAA+AGG - chr5_2:14673065-14673084 Msa0759120:CDS 30.0%
AAAAACAAAGCAGAAAAGGA+TGG - chr5_2:14673069-14673088 Msa0759120:CDS 30.0%
TCTATGTATATTCTACAGTC+TGG - chr5_2:14673350-14673369 Msa0759120:intron 30.0%
AGTTGTGATATGTTGAATGT+TGG + chr5_2:14673455-14673474 None:intergenic 30.0%
! CATGTGTAGCATTAAAGTTT+TGG + chr5_2:14673684-14673703 None:intergenic 30.0%
CAAACGATTGATGTAATGAA+GGG + chr5_2:14673714-14673733 None:intergenic 30.0%
AAAAATAAGGCCAAAAATGC+TGG - chr5_2:14673763-14673782 Msa0759120:CDS 30.0%
!! TTATCGAAATTTGTTGCAGA+AGG + chr5_2:14673802-14673821 None:intergenic 30.0%
AAACTTAGAAACCAATTGCT+TGG + chr5_2:14673899-14673918 None:intergenic 30.0%
!! ACTCATTTTTATCATGGACT+TGG + chr5_2:14673956-14673975 None:intergenic 30.0%
!! GATGCTACTCATTTTTATCA+TGG + chr5_2:14673962-14673981 None:intergenic 30.0%
CTCAAGTAACAAGTCAAAAA+AGG - chr5_2:14674264-14674283 Msa0759120:five_prime_UTR 30.0%
! TGGTGATTTTCGATTTTTCA+TGG - chr5_2:14674320-14674339 Msa0759120:five_prime_UTR 30.0%
! GGTGATTTTCGATTTTTCAT+GGG - chr5_2:14674321-14674340 Msa0759120:five_prime_UTR 30.0%
CATGGGAAAAAGTAAGATAT+CGG - chr5_2:14674338-14674357 Msa0759120:five_prime_UTR 30.0%
!!! ATTTTTTCAGTGGTTTCTAC+AGG - chr5_2:14672743-14672762 Msa0759120:intron 30.0%
TCAAATGTATAGATGGTTTG+CGG + chr5_2:14672971-14672990 None:intergenic 30.0%
AGGAAAAAACAAAGCAGAAA+AGG - chr5_2:14673065-14673084 Msa0759120:CDS 30.0%
AAAAACAAAGCAGAAAAGGA+TGG - chr5_2:14673069-14673088 Msa0759120:CDS 30.0%
TCTATGTATATTCTACAGTC+TGG - chr5_2:14673350-14673369 Msa0759120:intron 30.0%
AGTTGTGATATGTTGAATGT+TGG + chr5_2:14673455-14673474 None:intergenic 30.0%
! CATGTGTAGCATTAAAGTTT+TGG + chr5_2:14673684-14673703 None:intergenic 30.0%
CAAACGATTGATGTAATGAA+GGG + chr5_2:14673714-14673733 None:intergenic 30.0%
AAAAATAAGGCCAAAAATGC+TGG - chr5_2:14673763-14673782 Msa0759120:CDS 30.0%
!! TTATCGAAATTTGTTGCAGA+AGG + chr5_2:14673802-14673821 None:intergenic 30.0%
AAACTTAGAAACCAATTGCT+TGG + chr5_2:14673899-14673918 None:intergenic 30.0%
!! ACTCATTTTTATCATGGACT+TGG + chr5_2:14673956-14673975 None:intergenic 30.0%
!! GATGCTACTCATTTTTATCA+TGG + chr5_2:14673962-14673981 None:intergenic 30.0%
CTCAAGTAACAAGTCAAAAA+AGG - chr5_2:14674264-14674283 Msa0759120:five_prime_UTR 30.0%
! TGGTGATTTTCGATTTTTCA+TGG - chr5_2:14674320-14674339 Msa0759120:five_prime_UTR 30.0%
! GGTGATTTTCGATTTTTCAT+GGG - chr5_2:14674321-14674340 Msa0759120:five_prime_UTR 30.0%
CATGGGAAAAAGTAAGATAT+CGG - chr5_2:14674338-14674357 Msa0759120:five_prime_UTR 30.0%
!!! TTTTTAGCTGTTGCTATCTG+TGG + chr5_2:14672663-14672682 None:intergenic 35.0%
TGATAAATCATGCCATGATC+TGG - chr5_2:14672790-14672809 Msa0759120:three_prime_UTR 35.0%
! CAAATGTATAGATGGTTTGC+GGG + chr5_2:14672970-14672989 None:intergenic 35.0%
! TCTGTGCTGCTAAATTCAAA+AGG - chr5_2:14673045-14673064 Msa0759120:CDS 35.0%
GCATGCAATGAAATATTTGG+TGG + chr5_2:14673096-14673115 None:intergenic 35.0%
! GTCTCAATGAAAGAGAGTTT+TGG + chr5_2:14673246-14673265 None:intergenic 35.0%
ATGTATATTCTACAGTCTGG+AGG - chr5_2:14673353-14673372 Msa0759120:intron 35.0%
!!! CCTTTTGGAACATTCCATTT+AGG + chr5_2:14673380-14673399 None:intergenic 35.0%
CCTAAATGGAATGTTCCAAA+AGG - chr5_2:14673377-14673396 Msa0759120:intron 35.0%
GTTCCAAAAGGAAGAAAAGA+TGG - chr5_2:14673389-14673408 Msa0759120:intron 35.0%
! CTTCCATCTTTTCTTCCTTT+TGG + chr5_2:14673395-14673414 None:intergenic 35.0%
AAAAGATGGAAGAACATCCA+AGG - chr5_2:14673403-14673422 Msa0759120:intron 35.0%
!! TGGTAATTGTCTTGTTTCAC+TGG + chr5_2:14673429-14673448 None:intergenic 35.0%
!!! ACATGTTTTGACCCATATGT+AGG - chr5_2:14673610-14673629 Msa0759120:intron 35.0%
!!! TAAAGTTTTGGATTCTGCTC+TGG + chr5_2:14673672-14673691 None:intergenic 35.0%
GCAAACGATTGATGTAATGA+AGG + chr5_2:14673715-14673734 None:intergenic 35.0%
AAATTGATCCTCCAACAAGA+AGG - chr5_2:14673832-14673851 Msa0759120:CDS 35.0%
AAGAAAACAAGCCTTCTTGT+TGG + chr5_2:14673846-14673865 None:intergenic 35.0%
! AAACCAATTGCTTGGTCTTT+GGG + chr5_2:14673891-14673910 None:intergenic 35.0%
AAAATGAGTAGCATCAATGG+TGG - chr5_2:14673967-14673986 Msa0759120:intron 35.0%
AAATGAGTAGCATCAATGGT+GGG - chr5_2:14673968-14673987 Msa0759120:intron 35.0%
!! GGTGAATCACATTTTGAAGA+TGG - chr5_2:14674087-14674106 Msa0759120:CDS 35.0%
!!! TTTTTAGCTGTTGCTATCTG+TGG + chr5_2:14672663-14672682 None:intergenic 35.0%
TGATAAATCATGCCATGATC+TGG - chr5_2:14672790-14672809 Msa0759120:three_prime_UTR 35.0%
! CAAATGTATAGATGGTTTGC+GGG + chr5_2:14672970-14672989 None:intergenic 35.0%
! TCTGTGCTGCTAAATTCAAA+AGG - chr5_2:14673045-14673064 Msa0759120:CDS 35.0%
GCATGCAATGAAATATTTGG+TGG + chr5_2:14673096-14673115 None:intergenic 35.0%
! GTCTCAATGAAAGAGAGTTT+TGG + chr5_2:14673246-14673265 None:intergenic 35.0%
ATGTATATTCTACAGTCTGG+AGG - chr5_2:14673353-14673372 Msa0759120:intron 35.0%
!!! CCTTTTGGAACATTCCATTT+AGG + chr5_2:14673380-14673399 None:intergenic 35.0%
CCTAAATGGAATGTTCCAAA+AGG - chr5_2:14673377-14673396 Msa0759120:intron 35.0%
GTTCCAAAAGGAAGAAAAGA+TGG - chr5_2:14673389-14673408 Msa0759120:intron 35.0%
! CTTCCATCTTTTCTTCCTTT+TGG + chr5_2:14673395-14673414 None:intergenic 35.0%
AAAAGATGGAAGAACATCCA+AGG - chr5_2:14673403-14673422 Msa0759120:intron 35.0%
!! TGGTAATTGTCTTGTTTCAC+TGG + chr5_2:14673429-14673448 None:intergenic 35.0%
!!! ACATGTTTTGACCCATATGT+AGG - chr5_2:14673610-14673629 Msa0759120:intron 35.0%
!!! TAAAGTTTTGGATTCTGCTC+TGG + chr5_2:14673672-14673691 None:intergenic 35.0%
GCAAACGATTGATGTAATGA+AGG + chr5_2:14673715-14673734 None:intergenic 35.0%
AAATTGATCCTCCAACAAGA+AGG - chr5_2:14673832-14673851 Msa0759120:CDS 35.0%
AAGAAAACAAGCCTTCTTGT+TGG + chr5_2:14673846-14673865 None:intergenic 35.0%
! AAACCAATTGCTTGGTCTTT+GGG + chr5_2:14673891-14673910 None:intergenic 35.0%
AAAATGAGTAGCATCAATGG+TGG - chr5_2:14673967-14673986 Msa0759120:intron 35.0%
AAATGAGTAGCATCAATGGT+GGG - chr5_2:14673968-14673987 Msa0759120:intron 35.0%
!! GGTGAATCACATTTTGAAGA+TGG - chr5_2:14674087-14674106 Msa0759120:CDS 35.0%
CTTAATTGACATGGCTGTCA+TGG - chr5_2:14672697-14672716 Msa0759120:intron 40.0%
! AGCAATCATGGAAGTGCATT+CGG + chr5_2:14672883-14672902 None:intergenic 40.0%
ATACTCGAACGAAGCAATCA+TGG + chr5_2:14672895-14672914 None:intergenic 40.0%
! TATAGATGGTTTGCGGGAAA+AGG + chr5_2:14672964-14672983 None:intergenic 40.0%
! TCACACCCCTTCAAAAGTAT+AGG + chr5_2:14673021-14673040 None:intergenic 40.0%
GATATGTTGAATGTTGGTGC+TGG + chr5_2:14673449-14673468 None:intergenic 40.0%
!!! TGTTTTGACCCATATGTAGG+AGG - chr5_2:14673613-14673632 Msa0759120:intron 40.0%
!! GTTTTGACCCATATGTAGGA+GGG - chr5_2:14673614-14673633 Msa0759120:intron 40.0%
CTTTAATGCTACACATGACG+TGG - chr5_2:14673687-14673706 Msa0759120:intron 40.0%
AAAACAAGCCTTCTTGTTGG+AGG + chr5_2:14673843-14673862 None:intergenic 40.0%
!! AGGCTTGTTTTCTTCTGATC+AGG - chr5_2:14673852-14673871 Msa0759120:CDS 40.0%
! GAAACCAATTGCTTGGTCTT+TGG + chr5_2:14673892-14673911 None:intergenic 40.0%
! AAAGAAAGCCTTTTGTGAGG+CGG + chr5_2:14673923-14673942 None:intergenic 40.0%
! GTCAAAGAAAGCCTTTTGTG+AGG + chr5_2:14673926-14673945 None:intergenic 40.0%
! AATCACCACTTTGAGAAGCA+GGG + chr5_2:14674308-14674327 None:intergenic 40.0%
! AAATCACCACTTTGAGAAGC+AGG + chr5_2:14674309-14674328 None:intergenic 40.0%
! TATCGGTCTTGTCAAGAACA+TGG - chr5_2:14674355-14674374 Msa0759120:five_prime_UTR 40.0%
AAGAACATGGCCAACAAATG+TGG - chr5_2:14674368-14674387 Msa0759120:five_prime_UTR 40.0%
CTTAATTGACATGGCTGTCA+TGG - chr5_2:14672697-14672716 Msa0759120:intron 40.0%
! AGCAATCATGGAAGTGCATT+CGG + chr5_2:14672883-14672902 None:intergenic 40.0%
ATACTCGAACGAAGCAATCA+TGG + chr5_2:14672895-14672914 None:intergenic 40.0%
! TATAGATGGTTTGCGGGAAA+AGG + chr5_2:14672964-14672983 None:intergenic 40.0%
! TCACACCCCTTCAAAAGTAT+AGG + chr5_2:14673021-14673040 None:intergenic 40.0%
GATATGTTGAATGTTGGTGC+TGG + chr5_2:14673449-14673468 None:intergenic 40.0%
!!! TGTTTTGACCCATATGTAGG+AGG - chr5_2:14673613-14673632 Msa0759120:intron 40.0%
!! GTTTTGACCCATATGTAGGA+GGG - chr5_2:14673614-14673633 Msa0759120:intron 40.0%
CTTTAATGCTACACATGACG+TGG - chr5_2:14673687-14673706 Msa0759120:intron 40.0%
AAAACAAGCCTTCTTGTTGG+AGG + chr5_2:14673843-14673862 None:intergenic 40.0%
!! AGGCTTGTTTTCTTCTGATC+AGG - chr5_2:14673852-14673871 Msa0759120:CDS 40.0%
! GAAACCAATTGCTTGGTCTT+TGG + chr5_2:14673892-14673911 None:intergenic 40.0%
! AAAGAAAGCCTTTTGTGAGG+CGG + chr5_2:14673923-14673942 None:intergenic 40.0%
! GTCAAAGAAAGCCTTTTGTG+AGG + chr5_2:14673926-14673945 None:intergenic 40.0%
! AATCACCACTTTGAGAAGCA+GGG + chr5_2:14674308-14674327 None:intergenic 40.0%
! AAATCACCACTTTGAGAAGC+AGG + chr5_2:14674309-14674328 None:intergenic 40.0%
! TATCGGTCTTGTCAAGAACA+TGG - chr5_2:14674355-14674374 Msa0759120:five_prime_UTR 40.0%
TGTGAAGGATGCTACTGCTA+GGG - chr5_2:14672832-14672851 Msa0759120:three_prime_UTR 45.0%
GCATTAGAAGCTAAATGCCC+TGG - chr5_2:14673144-14673163 Msa0759120:CDS 45.0%
TACAGTCTGGAGGACCTAAA+TGG - chr5_2:14673363-14673382 Msa0759120:intron 45.0%
!! TTGTCTTGTTTCACTGGCCT+TGG + chr5_2:14673423-14673442 None:intergenic 45.0%
!! CTCTCAAAGAGCATTGTCAG+TGG - chr5_2:14673487-14673506 Msa0759120:CDS 45.0%
AGGTATGCCCTCCTACATAT+GGG + chr5_2:14673624-14673643 None:intergenic 45.0%
AAGGTATGCCCTCCTACATA+TGG + chr5_2:14673625-14673644 None:intergenic 45.0%
! TATGTAGGAGGGCATACCTT+AGG - chr5_2:14673625-14673644 Msa0759120:intron 45.0%
!! CATAGTGGTGCCAGCATTTT+TGG + chr5_2:14673776-14673795 None:intergenic 45.0%
CAAAAATGCTGGCACCACTA+TGG - chr5_2:14673774-14673793 Msa0759120:CDS 45.0%
TGTTGCAGAAGGATCCATAG+TGG + chr5_2:14673791-14673810 None:intergenic 45.0%
TAAGTTTGCCGCCTCACAAA+AGG - chr5_2:14673912-14673931 Msa0759120:CDS 45.0%
!! TCAATGGTGGGCAAGAAGTT+AGG - chr5_2:14673980-14673999 Msa0759120:intron 45.0%
TGTGAAGGATGCTACTGCTA+GGG - chr5_2:14672832-14672851 Msa0759120:three_prime_UTR 45.0%
GCATTAGAAGCTAAATGCCC+TGG - chr5_2:14673144-14673163 Msa0759120:CDS 45.0%
TACAGTCTGGAGGACCTAAA+TGG - chr5_2:14673363-14673382 Msa0759120:intron 45.0%
!! TTGTCTTGTTTCACTGGCCT+TGG + chr5_2:14673423-14673442 None:intergenic 45.0%
!! CTCTCAAAGAGCATTGTCAG+TGG - chr5_2:14673487-14673506 Msa0759120:CDS 45.0%
AGGTATGCCCTCCTACATAT+GGG + chr5_2:14673624-14673643 None:intergenic 45.0%
AAGGTATGCCCTCCTACATA+TGG + chr5_2:14673625-14673644 None:intergenic 45.0%
! TATGTAGGAGGGCATACCTT+AGG - chr5_2:14673625-14673644 Msa0759120:intron 45.0%
!! CATAGTGGTGCCAGCATTTT+TGG + chr5_2:14673776-14673795 None:intergenic 45.0%
CAAAAATGCTGGCACCACTA+TGG - chr5_2:14673774-14673793 Msa0759120:CDS 45.0%
TGTTGCAGAAGGATCCATAG+TGG + chr5_2:14673791-14673810 None:intergenic 45.0%
TAAGTTTGCCGCCTCACAAA+AGG - chr5_2:14673912-14673931 Msa0759120:CDS 45.0%
!! TCAATGGTGGGCAAGAAGTT+AGG - chr5_2:14673980-14673999 Msa0759120:intron 45.0%
CTGTGAAGGATGCTACTGCT+AGG - chr5_2:14672831-14672850 Msa0759120:three_prime_UTR 50.0%
CAGCACAAGAAACTACGCCA+GGG + chr5_2:14673164-14673183 None:intergenic 50.0%
TCAGCACAAGAAACTACGCC+AGG + chr5_2:14673165-14673184 None:intergenic 50.0%
ATATTCTCGCTCTCGCAGCA+AGG - chr5_2:14673184-14673203 Msa0759120:CDS 50.0%
TATTCTCGCTCTCGCAGCAA+GGG - chr5_2:14673185-14673204 Msa0759120:CDS 50.0%
AGCAAGGGACGCAGTTTATC+TGG - chr5_2:14673200-14673219 Msa0759120:CDS 50.0%
AGCATTGTCAGTGGAAGACC+TGG - chr5_2:14673496-14673515 Msa0759120:CDS 50.0%
GAATACCTGACAGAGCTACC+AGG + chr5_2:14673517-14673536 None:intergenic 50.0%
TGAGCAGTGAGAGAAGCCTA+AGG + chr5_2:14673644-14673663 None:intergenic 50.0%
CAGCCCAAAGACCAAGCAAT+TGG - chr5_2:14673885-14673904 Msa0759120:CDS 50.0%
! TGGTGGGCAAGAAGTTAGGA+AGG - chr5_2:14673984-14674003 Msa0759120:intron 50.0%
CTGTGAAGGATGCTACTGCT+AGG - chr5_2:14672831-14672850 Msa0759120:three_prime_UTR 50.0%
CAGCACAAGAAACTACGCCA+GGG + chr5_2:14673164-14673183 None:intergenic 50.0%
TCAGCACAAGAAACTACGCC+AGG + chr5_2:14673165-14673184 None:intergenic 50.0%
ATATTCTCGCTCTCGCAGCA+AGG - chr5_2:14673184-14673203 Msa0759120:CDS 50.0%
TATTCTCGCTCTCGCAGCAA+GGG - chr5_2:14673185-14673204 Msa0759120:CDS 50.0%
AGCAAGGGACGCAGTTTATC+TGG - chr5_2:14673200-14673219 Msa0759120:CDS 50.0%
AGCATTGTCAGTGGAAGACC+TGG - chr5_2:14673496-14673515 Msa0759120:CDS 50.0%
GAATACCTGACAGAGCTACC+AGG + chr5_2:14673517-14673536 None:intergenic 50.0%
TGAGCAGTGAGAGAAGCCTA+AGG + chr5_2:14673644-14673663 None:intergenic 50.0%
CAGCCCAAAGACCAAGCAAT+TGG - chr5_2:14673885-14673904 Msa0759120:CDS 50.0%
! TGGTGGGCAAGAAGTTAGGA+AGG - chr5_2:14673984-14674003 Msa0759120:intron 50.0%
!! TGCATTCGGAGAAGTGCTGC+TGG + chr5_2:14672869-14672888 None:intergenic 55.0%
! GAAGACCTGGTAGCTCTGTC+AGG - chr5_2:14673509-14673528 Msa0759120:CDS 55.0%
! CTTTGAGAAGCAGGGCTCGT+GGG + chr5_2:14674300-14674319 None:intergenic 55.0%
! ACTTTGAGAAGCAGGGCTCG+TGG + chr5_2:14674301-14674320 None:intergenic 55.0%
ACGAGCCCTGCTTCTCAAAG+TGG - chr5_2:14674300-14674319 Msa0759120:five_prime_UTR 55.0%
!! TGCATTCGGAGAAGTGCTGC+TGG + chr5_2:14672869-14672888 None:intergenic 55.0%
! GAAGACCTGGTAGCTCTGTC+AGG - chr5_2:14673509-14673528 Msa0759120:CDS 55.0%
! CTTTGAGAAGCAGGGCTCGT+GGG + chr5_2:14674300-14674319 None:intergenic 55.0%
! ACTTTGAGAAGCAGGGCTCG+TGG + chr5_2:14674301-14674320 None:intergenic 55.0%
ACGAGCCCTGCTTCTCAAAG+TGG - chr5_2:14674300-14674319 Msa0759120:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 14672580 14674387 14672580 ID=Msa0759120;Name=Msa0759120
chr5_2 mRNA 14672580 14674387 14672580 ID=Msa0759120-mRNA-1;Parent=Msa0759120;Name=Msa0759120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=127|1|1|1|0.75|0.6|5|294|316
chr5_2 exon 14672580 14672697 14672580 ID=Msa0759120-mRNA-1:exon:6666;Parent=Msa0759120-mRNA-1
chr5_2 exon 14672765 14673335 14672765 ID=Msa0759120-mRNA-1:exon:6665;Parent=Msa0759120-mRNA-1
chr5_2 exon 14673437 14673599 14673437 ID=Msa0759120-mRNA-1:exon:6664;Parent=Msa0759120-mRNA-1
chr5_2 exon 14673746 14673934 14673746 ID=Msa0759120-mRNA-1:exon:6663;Parent=Msa0759120-mRNA-1
chr5_2 exon 14674057 14674387 14674057 ID=Msa0759120-mRNA-1:exon:6662;Parent=Msa0759120-mRNA-1
chr5_2 five_prime_UTR 14674261 14674387 14674261 ID=Msa0759120-mRNA-1:five_prime_utr;Parent=Msa0759120-mRNA-1
chr5_2 CDS 14674057 14674260 14674057 ID=Msa0759120-mRNA-1:cds;Parent=Msa0759120-mRNA-1
chr5_2 CDS 14673746 14673934 14673746 ID=Msa0759120-mRNA-1:cds;Parent=Msa0759120-mRNA-1
chr5_2 CDS 14673437 14673599 14673437 ID=Msa0759120-mRNA-1:cds;Parent=Msa0759120-mRNA-1
chr5_2 CDS 14672941 14673335 14672941 ID=Msa0759120-mRNA-1:cds;Parent=Msa0759120-mRNA-1
chr5_2 three_prime_UTR 14672765 14672940 14672765 ID=Msa0759120-mRNA-1:three_prime_utr;Parent=Msa0759120-mRNA-1
chr5_2 three_prime_UTR 14672580 14672697 14672580 ID=Msa0759120-mRNA-1:three_prime_utr;Parent=Msa0759120-mRNA-1
Gene Sequence

>Msa0759120

ATGGCTGTCATGGTTGCATTCTTGAATTTGATTATCATTTTTTCAGTGGTTTCTACAGGAAAATCACTCAGCTTAAACTACTATGATAAATCATGCCATGATCTGGAGTATATTATTTTGAAGACTGTGAAGGATGCTACTGCTAGGGACAAAACTGTTCCAGCAGCACTTCTCCGAATGCACTTCCATGATTGCTTCGTTCGAGGGTGTGATGCATCTGTGCTGCTAAATTCAAAAGGAAAAAACAAAGCAGAAAAGGATGGACCACCAAATATTTCATTGCATGCATTCTATGTCATTGATGAAGCAAAGAAAGCATTAGAAGCTAAATGCCCTGGCGTAGTTTCTTGTGCTGATATTCTCGCTCTCGCAGCAAGGGACGCAGTTTATCTGTCTGGAGGACCTAAATGGAATGTTCCAAAAGGAAGAAAAGATGGAAGAACATCCAAGGCCAGTGAAACAAGACAATTACCAGCACCAACATTCAACATATCACAACTGCAGCAAAGCTTCTCTCAAAGAGCATTGTCAGTGGAAGACCTGGTAGCTCTGTCAGGAGGGCATACCTTAGGCTTCTCTCACTGCTCATCTTTCCAGAGCAGAATCCAAAACTTTAATGCTACACATGACGTGGACCCTTCATTACATCAATCGTTTGCAACAAAACTAAAATCAATTTGTCTGTTGAAAAATAAGGCCAAAAATGCTGGCACCACTATGGATCCTTCTGCAACAAATTTCGATAATACATATTACAAATTGATCCTCCAACAAGAAGGCTTGTTTTCTTCTGATCAGGCTTTGCTTGACAGCCCAAAGACCAAGCAATTGGTTTCTAAGTTTGCCGCCTCACAAAAGGCTTTCTTTGACGCTTTTGCCAAGTCCATGATAAAAATGAGTAGCATCAATGGTGGGCAAGAAGTTAGGAAGGACTGCAGAAAGATCAATTAG
Protein sequence

>Msa0759120

MAVMVAFLNLIIIFSVVSTGKSLSLNYYDKSCHDLEYIILKTVKDATARDKTVPAALLRMHFHDCFVRGCDASVLLNSKGKNKAEKDGPPNISLHAFYVIDEAKKALEAKCPGVVSCADILALAARDAVYLSGGPKWNVPKGRKDGRTSKASETRQLPAPTFNISQLQQSFSQRALSVEDLVALSGGHTLGFSHCSSFQSRIQNFNATHDVDPSLHQSFATKLKSICLLKNKAKNAGTTMDPSATNFDNTYYKLILQQEGLFSSDQALLDSPKTKQLVSKFAASQKAFFDAFAKSMIKMSSINGGQEVRKDCRKIN*