Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712970 | XP_013446281.1 | 90.909 | 165 | 15 | 0 | 16 | 180 | 105 | 269 | 4.15e-103 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712970 | A0A072TTZ7 | 90.909 | 165 | 15 | 0 | 16 | 180 | 105 | 269 | 1.98e-103 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712970 | Msa0713000 | 0.802645 | 5.084434e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712970 | MtrunA17_Chr8g0369411 | 90.909 | 165 | 15 | 0 | 16 | 180 | 105 | 269 | 3.81e-107 | 307 |
| Msa0712970 | MtrunA17_Chr8g0369401 | 70.303 | 165 | 49 | 0 | 16 | 180 | 7 | 171 | 2.58e-86 | 251 |
| Msa0712970 | MtrunA17_Chr5g0409571 | 68.387 | 155 | 49 | 0 | 21 | 175 | 110 | 264 | 5.85e-76 | 228 |
| Msa0712970 | MtrunA17_Chr4g0033971 | 35.333 | 150 | 86 | 3 | 16 | 155 | 99 | 247 | 6.38e-23 | 92.4 |
| Msa0712970 | MtrunA17_Chr1g0210731 | 33.571 | 140 | 88 | 2 | 39 | 173 | 127 | 266 | 4.03e-19 | 82.4 |
| Msa0712970 | MtrunA17_Chr2g0287431 | 33.083 | 133 | 79 | 4 | 38 | 165 | 124 | 251 | 1.63e-14 | 70.1 |
| Msa0712970 | MtrunA17_Chr1g0210721 | 27.857 | 140 | 96 | 2 | 39 | 173 | 122 | 261 | 3.12e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712970 | AT1G32127.2 | 68.421 | 152 | 48 | 0 | 21 | 172 | 110 | 261 | 3.24e-68 | 209 |
| Msa0712970 | AT1G32127.1 | 68.421 | 152 | 48 | 0 | 21 | 172 | 110 | 261 | 3.24e-68 | 209 |
| Msa0712970 | AT1G55240.1 | 38.017 | 121 | 70 | 2 | 33 | 148 | 121 | 241 | 1.83e-21 | 89.4 |
| Msa0712970 | AT1G55230.1 | 29.139 | 151 | 102 | 2 | 31 | 176 | 119 | 269 | 2.36e-19 | 83.6 |
| Msa0712970 | AT5G19870.1 | 26.829 | 164 | 112 | 4 | 16 | 173 | 104 | 265 | 1.11e-17 | 78.6 |
| Msa0712970 | AT1G49470.1 | 33.333 | 159 | 88 | 4 | 16 | 156 | 96 | 254 | 9.35e-15 | 70.9 |
Find 47 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCATCTTATTATTAAT+TGG | 0.103762 | 5_1:+4880987 | None:intergenic |
| GGATTTGCAGCTTCAAGATA+TGG | 0.293962 | 5_1:-4881030 | Msa0712970:CDS |
| TGCCAGAAGGTGCTCTTTGT+TGG | 0.316256 | 5_1:-4881431 | Msa0712970:CDS |
| CCAGATTCCTTGCAGTGTTA+TGG | 0.333794 | 5_1:+4881227 | None:intergenic |
| GGACATGATAATAGCCTTCT+AGG | 0.345352 | 5_1:+4881343 | None:intergenic |
| GTCCTCCTCGCCTTCCTGAT+TGG | 0.367650 | 5_1:-4881324 | Msa0712970:CDS |
| TCTTCATCTTATTATTAATT+GGG | 0.367825 | 5_1:+4880988 | None:intergenic |
| GTAGGAACTATAGCTTCCTT+TGG | 0.382282 | 5_1:-4881051 | Msa0712970:CDS |
| CCATAACACTGCAAGGAATC+TGG | 0.398310 | 5_1:-4881227 | Msa0712970:CDS |
| TTTCCCAGTCGATTTATGTA+AGG | 0.418927 | 5_1:-4881256 | Msa0712970:CDS |
| ACTACTCACAGAGGCCTAGA+AGG | 0.420676 | 5_1:-4881357 | Msa0712970:CDS |
| ATCCAACAAAGAGCACCTTC+TGG | 0.440213 | 5_1:+4881429 | None:intergenic |
| TGGGAAACATGTCGGTAAAA+CGG | 0.451333 | 5_1:+4881272 | None:intergenic |
| GCTGTCCTTGCTGTTCATGT+AGG | 0.470553 | 5_1:-4881069 | Msa0712970:CDS |
| ATAAAATACAAAGACCAATC+AGG | 0.477833 | 5_1:+4881310 | None:intergenic |
| GATTTGCAGCTTCAAGATAT+GGG | 0.478619 | 5_1:-4881029 | Msa0712970:CDS |
| ATTGTCCTTCATGCTACAAC+CGG | 0.496771 | 5_1:+4881161 | None:intergenic |
| ATGCCCTTACATAAATCGAC+TGG | 0.514730 | 5_1:+4881252 | None:intergenic |
| TTCCCAGTCGATTTATGTAA+GGG | 0.527584 | 5_1:-4881255 | Msa0712970:CDS |
| GTGTTGGTGTGGCCAAGTGA+TGG | 0.533334 | 5_1:+4882727 | None:intergenic |
| ACAAAGAGCACCTTCTGGCA+AGG | 0.545375 | 5_1:+4881434 | None:intergenic |
| ATTGTCGGTTGTCAGAATAT+AGG | 0.551980 | 5_1:+4882684 | None:intergenic |
| TTTGGCCCTATGCTACCGTC+CGG | 0.562144 | 5_1:-4881180 | Msa0712970:CDS |
| ACATGTCGGTAAAACGGCTC+CGG | 0.564188 | 5_1:+4881278 | None:intergenic |
| CAAAGAGCACCTTCTGGCAA+GGG | 0.567003 | 5_1:+4881435 | None:intergenic |
| CTACAACCGGACGGTAGCAT+AGG | 0.567441 | 5_1:+4881174 | None:intergenic |
| AGTGTGTTACTGGCTATTGT+CGG | 0.568814 | 5_1:+4882669 | None:intergenic |
| CAAATGACATATCCATCACT+TGG | 0.577361 | 5_1:-4882739 | Msa0712970:CDS |
| TTTGTGCTTTGGTGTTGGTG+TGG | 0.582012 | 5_1:+4882716 | None:intergenic |
| TCGAAGGAGAGTGAGGTTCG+TGG | 0.586812 | 5_1:-4881123 | Msa0712970:CDS |
| ACCGTCCGGTTGTAGCATGA+AGG | 0.596841 | 5_1:-4881166 | Msa0712970:CDS |
| GGCATTGCCATAACACTGCA+AGG | 0.598058 | 5_1:-4881234 | Msa0712970:CDS |
| TGTTGTTACATGTCATTCGA+AGG | 0.601468 | 5_1:-4881139 | Msa0712970:CDS |
| TACAACCGGACGGTAGCATA+GGG | 0.608425 | 5_1:+4881175 | None:intergenic |
| AGATATATTCCCTTGCCAGA+AGG | 0.617393 | 5_1:-4881444 | Msa0712970:CDS |
| TCTTGAAGCTGCAAATCCAA+AGG | 0.618524 | 5_1:+4881035 | None:intergenic |
| AAATCGACTGGGAAACATGT+CGG | 0.624423 | 5_1:+4881264 | None:intergenic |
| ATGTCATTCGAAGGAGAGTG+AGG | 0.625750 | 5_1:-4881130 | Msa0712970:CDS |
| TGCCCTTACATAAATCGACT+GGG | 0.628576 | 5_1:+4881253 | None:intergenic |
| GACCAATCAGGAAGGCGAGG+AGG | 0.633883 | 5_1:+4881322 | None:intergenic |
| AAAGACCAATCAGGAAGGCG+AGG | 0.635504 | 5_1:+4881319 | None:intergenic |
| TCCTTCATGCTACAACCGGA+CGG | 0.644939 | 5_1:+4881165 | None:intergenic |
| AATACAAAGACCAATCAGGA+AGG | 0.661377 | 5_1:+4881314 | None:intergenic |
| ATACTCTGCAGTGAATGCTG+TGG | 0.693297 | 5_1:+4881401 | None:intergenic |
| AGGGCCAAAGAGAACAAAAG+CGG | 0.695971 | 5_1:+4881194 | None:intergenic |
| TAGTTCCTACATGAACAGCA+AGG | 0.707671 | 5_1:+4881064 | None:intergenic |
| TTTCATTCAACTACTCACAG+AGG | 0.714436 | 5_1:-4881366 | Msa0712970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTCCATTTTTTAT+TGG | + | chr5_1:4881744-4881763 | None:intergenic | 10.0% |
| !!! | AATATTTTTCCATTTTTTAT+TGG | + | chr5_1:4881744-4881763 | None:intergenic | 10.0% |
| !! | AAAATATATAACCAAGTTTA+AGG | + | chr5_1:4882025-4882044 | None:intergenic | 15.0% |
| !! | AAAATATATAACCAAGTTTA+AGG | + | chr5_1:4882025-4882044 | None:intergenic | 15.0% |
| !!! | TTAGTTTTGAGTAATTTGTA+CGG | + | chr5_1:4881175-4881194 | None:intergenic | 20.0% |
| !! | ATGTTATTCTACATGTTATT+TGG | - | chr5_1:4881396-4881415 | Msa0712970:CDS | 20.0% |
| !!! | TGTTATTCTACATGTTATTT+GGG | - | chr5_1:4881397-4881416 | Msa0712970:CDS | 20.0% |
| !! | AATAAACTAAGACTTAGTAA+AGG | + | chr5_1:4881672-4881691 | None:intergenic | 20.0% |
| !! | TTTACTAAGTCTTAGTTTAT+TGG | - | chr5_1:4881671-4881690 | Msa0712970:intron | 20.0% |
| !! | TTGTAATTGCCAATAAAAAA+TGG | - | chr5_1:4881732-4881751 | Msa0712970:intron | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4881880-4881899 | None:intergenic | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4881880-4881899 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCCATCTCTA+AGG | - | chr5_1:4882034-4882053 | Msa0712970:intron | 20.0% |
| !!! | TATATATTTTCCATCTCTAA+GGG | - | chr5_1:4882035-4882054 | Msa0712970:intron | 20.0% |
| !! | CTTATTTCCATTAACATTTA+AGG | - | chr5_1:4882166-4882185 | Msa0712970:intron | 20.0% |
| !!! | TTTATTTTATCCTTAAGCTA+TGG | - | chr5_1:4882234-4882253 | Msa0712970:intron | 20.0% |
| !! | AAATAAATAACCATAGCTTA+AGG | + | chr5_1:4882247-4882266 | None:intergenic | 20.0% |
| !!! | TTAGTTTTGAGTAATTTGTA+CGG | + | chr5_1:4881175-4881194 | None:intergenic | 20.0% |
| !! | ATGTTATTCTACATGTTATT+TGG | - | chr5_1:4881396-4881415 | Msa0712970:CDS | 20.0% |
| !!! | TGTTATTCTACATGTTATTT+GGG | - | chr5_1:4881397-4881416 | Msa0712970:CDS | 20.0% |
| !! | AATAAACTAAGACTTAGTAA+AGG | + | chr5_1:4881672-4881691 | None:intergenic | 20.0% |
| !! | TTTACTAAGTCTTAGTTTAT+TGG | - | chr5_1:4881671-4881690 | Msa0712970:intron | 20.0% |
| !! | TTGTAATTGCCAATAAAAAA+TGG | - | chr5_1:4881732-4881751 | Msa0712970:intron | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4881880-4881899 | None:intergenic | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4881880-4881899 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCCATCTCTA+AGG | - | chr5_1:4882034-4882053 | Msa0712970:intron | 20.0% |
| !!! | TATATATTTTCCATCTCTAA+GGG | - | chr5_1:4882035-4882054 | Msa0712970:intron | 20.0% |
| !! | CTTATTTCCATTAACATTTA+AGG | - | chr5_1:4882166-4882185 | Msa0712970:intron | 20.0% |
| !!! | TTTATTTTATCCTTAAGCTA+TGG | - | chr5_1:4882234-4882253 | Msa0712970:intron | 20.0% |
| !! | AAATAAATAACCATAGCTTA+AGG | + | chr5_1:4882247-4882266 | None:intergenic | 20.0% |
| ! | AGAATAACATCATTAGTAGT+AGG | + | chr5_1:4881386-4881405 | None:intergenic | 25.0% |
| !! | GTTATTCTACATGTTATTTG+GGG | - | chr5_1:4881398-4881417 | Msa0712970:CDS | 25.0% |
| ! | ACAGTAAACAATATAAACTC+AGG | + | chr5_1:4881476-4881495 | None:intergenic | 25.0% |
| ! | TATATTGTTTACTGTCTTCA+AGG | - | chr5_1:4881481-4881500 | Msa0712970:intron | 25.0% |
| !!! | TTTAGTTTTGAGTAAACACA+AGG | - | chr5_1:4881701-4881720 | Msa0712970:intron | 25.0% |
| ! | TGTTATTCAGATAATGATCA+AGG | + | chr5_1:4881816-4881835 | None:intergenic | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4881884-4881903 | Msa0712970:intron | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4881884-4881903 | Msa0712970:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAT+TGG | - | chr5_1:4882071-4882090 | Msa0712970:intron | 25.0% |
| ! | AAGCTATCCTTAAATGTTAA+TGG | + | chr5_1:4882176-4882195 | None:intergenic | 25.0% |
| ! | ACAGAATAAGATCAAATTAG+AGG | + | chr5_1:4882274-4882293 | None:intergenic | 25.0% |
| ! | ATAAAATACAAAGACCAATC+AGG | + | chr5_1:4882431-4882450 | None:intergenic | 25.0% |
| !! | TGTATTTTATCTTCAATTGC+CGG | - | chr5_1:4882441-4882460 | Msa0712970:intron | 25.0% |
| ! | AGAATAACATCATTAGTAGT+AGG | + | chr5_1:4881386-4881405 | None:intergenic | 25.0% |
| !! | GTTATTCTACATGTTATTTG+GGG | - | chr5_1:4881398-4881417 | Msa0712970:CDS | 25.0% |
| ! | ACAGTAAACAATATAAACTC+AGG | + | chr5_1:4881476-4881495 | None:intergenic | 25.0% |
| ! | TATATTGTTTACTGTCTTCA+AGG | - | chr5_1:4881481-4881500 | Msa0712970:intron | 25.0% |
| !!! | TTTAGTTTTGAGTAAACACA+AGG | - | chr5_1:4881701-4881720 | Msa0712970:intron | 25.0% |
| ! | TGTTATTCAGATAATGATCA+AGG | + | chr5_1:4881816-4881835 | None:intergenic | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4881884-4881903 | Msa0712970:intron | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4881884-4881903 | Msa0712970:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAT+TGG | - | chr5_1:4882071-4882090 | Msa0712970:intron | 25.0% |
| ! | AAGCTATCCTTAAATGTTAA+TGG | + | chr5_1:4882176-4882195 | None:intergenic | 25.0% |
| ! | ACAGAATAAGATCAAATTAG+AGG | + | chr5_1:4882274-4882293 | None:intergenic | 25.0% |
| ! | ATAAAATACAAAGACCAATC+AGG | + | chr5_1:4882431-4882450 | None:intergenic | 25.0% |
| !! | TGTATTTTATCTTCAATTGC+CGG | - | chr5_1:4882441-4882460 | Msa0712970:intron | 25.0% |
| !! | AAATTTTTGTGCTTTGGTGT+TGG | + | chr5_1:4881030-4881049 | None:intergenic | 30.0% |
| TTAGTAGTAGGTTGTGTTTA+AGG | + | chr5_1:4881374-4881393 | None:intergenic | 30.0% | |
| ATGTGATAATACACACACTT+AGG | - | chr5_1:4881555-4881574 | Msa0712970:intron | 30.0% | |
| TGAAAATGGAAAAGAAGGAA+AGG | + | chr5_1:4881790-4881809 | None:intergenic | 30.0% | |
| AATGATCAAGGAAGTGAAAA+TGG | + | chr5_1:4881804-4881823 | None:intergenic | 30.0% | |
| ACCAAGTTTAAGGACAAAAA+TGG | + | chr5_1:4882015-4882034 | None:intergenic | 30.0% | |
| TCAAATAAGCTTATGCAAAC+GGG | + | chr5_1:4882061-4882080 | None:intergenic | 30.0% | |
| CTCAAATAAGCTTATGCAAA+CGG | + | chr5_1:4882062-4882081 | None:intergenic | 30.0% | |
| !! | AAATTTTTGTGCTTTGGTGT+TGG | + | chr5_1:4881030-4881049 | None:intergenic | 30.0% |
| TTAGTAGTAGGTTGTGTTTA+AGG | + | chr5_1:4881374-4881393 | None:intergenic | 30.0% | |
| ATGTGATAATACACACACTT+AGG | - | chr5_1:4881555-4881574 | Msa0712970:intron | 30.0% | |
| TGAAAATGGAAAAGAAGGAA+AGG | + | chr5_1:4881790-4881809 | None:intergenic | 30.0% | |
| AATGATCAAGGAAGTGAAAA+TGG | + | chr5_1:4881804-4881823 | None:intergenic | 30.0% | |
| ACCAAGTTTAAGGACAAAAA+TGG | + | chr5_1:4882015-4882034 | None:intergenic | 30.0% | |
| TCAAATAAGCTTATGCAAAC+GGG | + | chr5_1:4882061-4882080 | None:intergenic | 30.0% | |
| CTCAAATAAGCTTATGCAAA+CGG | + | chr5_1:4882062-4882081 | None:intergenic | 30.0% | |
| ! | ATTGTCGGTTGTCAGAATAT+AGG | + | chr5_1:4881057-4881076 | None:intergenic | 35.0% |
| CAGTGACTAAACATTCGTAT+GGG | + | chr5_1:4881116-4881135 | None:intergenic | 35.0% | |
| TTTGGGGAAAATAGATGCTA+TGG | - | chr5_1:4881414-4881433 | Msa0712970:CDS | 35.0% | |
| ! | GAGATGGTAATGCTTATAAG+TGG | - | chr5_1:4881503-4881522 | Msa0712970:intron | 35.0% |
| AAGTGGAGTGTACAAATTCT+TGG | - | chr5_1:4881520-4881539 | Msa0712970:intron | 35.0% | |
| AGTGGAGTGTACAAATTCTT+GGG | - | chr5_1:4881521-4881540 | Msa0712970:intron | 35.0% | |
| ATGCATACTTCATGCACATT+AGG | - | chr5_1:4881617-4881636 | Msa0712970:intron | 35.0% | |
| TGCATACTTCATGCACATTA+GGG | - | chr5_1:4881618-4881637 | Msa0712970:intron | 35.0% | |
| ATGGAAAAGAAGGAAAGGAT+CGG | + | chr5_1:4881785-4881804 | None:intergenic | 35.0% | |
| GGAAGTGAAAATGGAAAAGA+AGG | + | chr5_1:4881795-4881814 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGTCCTTAAACT+TGG | - | chr5_1:4882011-4882030 | Msa0712970:intron | 35.0% |
| ! | TAAGCACTTGTTAGACTGTT+TGG | - | chr5_1:4882096-4882115 | Msa0712970:intron | 35.0% |
| ! | AAGCACTTGTTAGACTGTTT+GGG | - | chr5_1:4882097-4882116 | Msa0712970:intron | 35.0% |
| TTTCATTCAACTACTCACAG+AGG | - | chr5_1:4882372-4882391 | Msa0712970:intron | 35.0% | |
| AATACAAAGACCAATCAGGA+AGG | + | chr5_1:4882427-4882446 | None:intergenic | 35.0% | |
| ! | TTTCCCAGTCGATTTATGTA+AGG | - | chr5_1:4882482-4882501 | Msa0712970:intron | 35.0% |
| ! | TTCCCAGTCGATTTATGTAA+GGG | - | chr5_1:4882483-4882502 | Msa0712970:intron | 35.0% |
| TGTTGTTACATGTCATTCGA+AGG | - | chr5_1:4882599-4882618 | Msa0712970:intron | 35.0% | |
| GATTTGCAGCTTCAAGATAT+GGG | - | chr5_1:4882709-4882728 | Msa0712970:CDS | 35.0% | |
| ! | ATTGTCGGTTGTCAGAATAT+AGG | + | chr5_1:4881057-4881076 | None:intergenic | 35.0% |
| CAGTGACTAAACATTCGTAT+GGG | + | chr5_1:4881116-4881135 | None:intergenic | 35.0% | |
| TTTGGGGAAAATAGATGCTA+TGG | - | chr5_1:4881414-4881433 | Msa0712970:CDS | 35.0% | |
| ! | GAGATGGTAATGCTTATAAG+TGG | - | chr5_1:4881503-4881522 | Msa0712970:intron | 35.0% |
| AAGTGGAGTGTACAAATTCT+TGG | - | chr5_1:4881520-4881539 | Msa0712970:intron | 35.0% | |
| AGTGGAGTGTACAAATTCTT+GGG | - | chr5_1:4881521-4881540 | Msa0712970:intron | 35.0% | |
| ATGCATACTTCATGCACATT+AGG | - | chr5_1:4881617-4881636 | Msa0712970:intron | 35.0% | |
| TGCATACTTCATGCACATTA+GGG | - | chr5_1:4881618-4881637 | Msa0712970:intron | 35.0% | |
| ATGGAAAAGAAGGAAAGGAT+CGG | + | chr5_1:4881785-4881804 | None:intergenic | 35.0% | |
| GGAAGTGAAAATGGAAAAGA+AGG | + | chr5_1:4881795-4881814 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGTCCTTAAACT+TGG | - | chr5_1:4882011-4882030 | Msa0712970:intron | 35.0% |
| ! | TAAGCACTTGTTAGACTGTT+TGG | - | chr5_1:4882096-4882115 | Msa0712970:intron | 35.0% |
| ! | AAGCACTTGTTAGACTGTTT+GGG | - | chr5_1:4882097-4882116 | Msa0712970:intron | 35.0% |
| TTTCATTCAACTACTCACAG+AGG | - | chr5_1:4882372-4882391 | Msa0712970:intron | 35.0% | |
| AATACAAAGACCAATCAGGA+AGG | + | chr5_1:4882427-4882446 | None:intergenic | 35.0% | |
| ! | TTTCCCAGTCGATTTATGTA+AGG | - | chr5_1:4882482-4882501 | Msa0712970:intron | 35.0% |
| ! | TTCCCAGTCGATTTATGTAA+GGG | - | chr5_1:4882483-4882502 | Msa0712970:intron | 35.0% |
| TGTTGTTACATGTCATTCGA+AGG | - | chr5_1:4882599-4882618 | Msa0712970:intron | 35.0% | |
| GATTTGCAGCTTCAAGATAT+GGG | - | chr5_1:4882709-4882728 | Msa0712970:CDS | 35.0% | |
| ! | GGCTGCAAATTTTTGTGCTT+TGG | + | chr5_1:4881036-4881055 | None:intergenic | 40.0% |
| ! | AGTGTGTTACTGGCTATTGT+CGG | + | chr5_1:4881072-4881091 | None:intergenic | 40.0% |
| GACTAAACATTCGTATGGGA+GGG | + | chr5_1:4881112-4881131 | None:intergenic | 40.0% | |
| TGACTAAACATTCGTATGGG+AGG | + | chr5_1:4881113-4881132 | None:intergenic | 40.0% | |
| CCAGTGACTAAACATTCGTA+TGG | + | chr5_1:4881117-4881136 | None:intergenic | 40.0% | |
| CCATACGAATGTTTAGTCAC+TGG | - | chr5_1:4881114-4881133 | Msa0712970:CDS | 40.0% | |
| CTCTCAGAAAAGACAAGGTT+AGG | - | chr5_1:4881327-4881346 | Msa0712970:CDS | 40.0% | |
| !! | AGGTGTTGTTGTTATGTTCC+TGG | - | chr5_1:4881347-4881366 | Msa0712970:CDS | 40.0% |
| GTTTACTGTCTTCAAGGAGA+TGG | - | chr5_1:4881487-4881506 | Msa0712970:intron | 40.0% | |
| AGATATATTCCCTTGCCAGA+AGG | - | chr5_1:4882294-4882313 | Msa0712970:intron | 40.0% | |
| GGACATGATAATAGCCTTCT+AGG | + | chr5_1:4882398-4882417 | None:intergenic | 40.0% | |
| TGGGAAACATGTCGGTAAAA+CGG | + | chr5_1:4882469-4882488 | None:intergenic | 40.0% | |
| AAATCGACTGGGAAACATGT+CGG | + | chr5_1:4882477-4882496 | None:intergenic | 40.0% | |
| TGCCCTTACATAAATCGACT+GGG | + | chr5_1:4882488-4882507 | None:intergenic | 40.0% | |
| ATGCCCTTACATAAATCGAC+TGG | + | chr5_1:4882489-4882508 | None:intergenic | 40.0% | |
| ATTGTCCTTCATGCTACAAC+CGG | + | chr5_1:4882580-4882599 | None:intergenic | 40.0% | |
| TAGTTCCTACATGAACAGCA+AGG | + | chr5_1:4882677-4882696 | None:intergenic | 40.0% | |
| GTAGGAACTATAGCTTCCTT+TGG | - | chr5_1:4882687-4882706 | Msa0712970:CDS | 40.0% | |
| TCTTGAAGCTGCAAATCCAA+AGG | + | chr5_1:4882706-4882725 | None:intergenic | 40.0% | |
| GGATTTGCAGCTTCAAGATA+TGG | - | chr5_1:4882708-4882727 | Msa0712970:CDS | 40.0% | |
| ! | GGCTGCAAATTTTTGTGCTT+TGG | + | chr5_1:4881036-4881055 | None:intergenic | 40.0% |
| ! | AGTGTGTTACTGGCTATTGT+CGG | + | chr5_1:4881072-4881091 | None:intergenic | 40.0% |
| GACTAAACATTCGTATGGGA+GGG | + | chr5_1:4881112-4881131 | None:intergenic | 40.0% | |
| TGACTAAACATTCGTATGGG+AGG | + | chr5_1:4881113-4881132 | None:intergenic | 40.0% | |
| CCAGTGACTAAACATTCGTA+TGG | + | chr5_1:4881117-4881136 | None:intergenic | 40.0% | |
| CCATACGAATGTTTAGTCAC+TGG | - | chr5_1:4881114-4881133 | Msa0712970:CDS | 40.0% | |
| CTCTCAGAAAAGACAAGGTT+AGG | - | chr5_1:4881327-4881346 | Msa0712970:CDS | 40.0% | |
| !! | AGGTGTTGTTGTTATGTTCC+TGG | - | chr5_1:4881347-4881366 | Msa0712970:CDS | 40.0% |
| GTTTACTGTCTTCAAGGAGA+TGG | - | chr5_1:4881487-4881506 | Msa0712970:intron | 40.0% | |
| AGATATATTCCCTTGCCAGA+AGG | - | chr5_1:4882294-4882313 | Msa0712970:intron | 40.0% | |
| GGACATGATAATAGCCTTCT+AGG | + | chr5_1:4882398-4882417 | None:intergenic | 40.0% | |
| TGGGAAACATGTCGGTAAAA+CGG | + | chr5_1:4882469-4882488 | None:intergenic | 40.0% | |
| AAATCGACTGGGAAACATGT+CGG | + | chr5_1:4882477-4882496 | None:intergenic | 40.0% | |
| TGCCCTTACATAAATCGACT+GGG | + | chr5_1:4882488-4882507 | None:intergenic | 40.0% | |
| ATGCCCTTACATAAATCGAC+TGG | + | chr5_1:4882489-4882508 | None:intergenic | 40.0% | |
| ATTGTCCTTCATGCTACAAC+CGG | + | chr5_1:4882580-4882599 | None:intergenic | 40.0% | |
| TAGTTCCTACATGAACAGCA+AGG | + | chr5_1:4882677-4882696 | None:intergenic | 40.0% | |
| GTAGGAACTATAGCTTCCTT+TGG | - | chr5_1:4882687-4882706 | Msa0712970:CDS | 40.0% | |
| TCTTGAAGCTGCAAATCCAA+AGG | + | chr5_1:4882706-4882725 | None:intergenic | 40.0% | |
| GGATTTGCAGCTTCAAGATA+TGG | - | chr5_1:4882708-4882727 | Msa0712970:CDS | 40.0% | |
| !! | TTTGTGCTTTGGTGTTGGTG+TGG | + | chr5_1:4881025-4881044 | None:intergenic | 45.0% |
| GTTTAGTCACTGGTCATAGC+CGG | - | chr5_1:4881124-4881143 | Msa0712970:CDS | 45.0% | |
| !! | AACAGAAGAGCACTGACTAC+CGG | + | chr5_1:4881146-4881165 | None:intergenic | 45.0% |
| !! | CCTTGTCTTTTCTGAGAGCA+GGG | + | chr5_1:4881325-4881344 | None:intergenic | 45.0% |
| !! | ACCTTGTCTTTTCTGAGAGC+AGG | + | chr5_1:4881326-4881345 | None:intergenic | 45.0% |
| GTAGGTTGTGTTTAAGGACC+AGG | + | chr5_1:4881368-4881387 | None:intergenic | 45.0% | |
| AATACCTCACCACTCTCATG+AGG | - | chr5_1:4881588-4881607 | Msa0712970:intron | 45.0% | |
| CATGACTTTCCTCATGAGAG+TGG | + | chr5_1:4881600-4881619 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr5_1:4882108-4882127 | Msa0712970:intron | 45.0% | |
| !! | ATCCAACAAAGAGCACCTTC+TGG | + | chr5_1:4882312-4882331 | None:intergenic | 45.0% |
| ATACTCTGCAGTGAATGCTG+TGG | + | chr5_1:4882340-4882359 | None:intergenic | 45.0% | |
| CCAGATTCCTTGCAGTGTTA+TGG | + | chr5_1:4882514-4882533 | None:intergenic | 45.0% | |
| CCATAACACTGCAAGGAATC+TGG | - | chr5_1:4882511-4882530 | Msa0712970:intron | 45.0% | |
| !! | CAGACCGCTTTTGTTCTCTT+TGG | - | chr5_1:4882540-4882559 | Msa0712970:intron | 45.0% |
| AGGGCCAAAGAGAACAAAAG+CGG | + | chr5_1:4882547-4882566 | None:intergenic | 45.0% | |
| ATGTCATTCGAAGGAGAGTG+AGG | - | chr5_1:4882608-4882627 | Msa0712970:intron | 45.0% | |
| !! | TTTGTGCTTTGGTGTTGGTG+TGG | + | chr5_1:4881025-4881044 | None:intergenic | 45.0% |
| GTTTAGTCACTGGTCATAGC+CGG | - | chr5_1:4881124-4881143 | Msa0712970:CDS | 45.0% | |
| !! | AACAGAAGAGCACTGACTAC+CGG | + | chr5_1:4881146-4881165 | None:intergenic | 45.0% |
| !! | CCTTGTCTTTTCTGAGAGCA+GGG | + | chr5_1:4881325-4881344 | None:intergenic | 45.0% |
| !! | ACCTTGTCTTTTCTGAGAGC+AGG | + | chr5_1:4881326-4881345 | None:intergenic | 45.0% |
| GTAGGTTGTGTTTAAGGACC+AGG | + | chr5_1:4881368-4881387 | None:intergenic | 45.0% | |
| AATACCTCACCACTCTCATG+AGG | - | chr5_1:4881588-4881607 | Msa0712970:intron | 45.0% | |
| CATGACTTTCCTCATGAGAG+TGG | + | chr5_1:4881600-4881619 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr5_1:4882108-4882127 | Msa0712970:intron | 45.0% | |
| !! | ATCCAACAAAGAGCACCTTC+TGG | + | chr5_1:4882312-4882331 | None:intergenic | 45.0% |
| ATACTCTGCAGTGAATGCTG+TGG | + | chr5_1:4882340-4882359 | None:intergenic | 45.0% | |
| CCAGATTCCTTGCAGTGTTA+TGG | + | chr5_1:4882514-4882533 | None:intergenic | 45.0% | |
| CCATAACACTGCAAGGAATC+TGG | - | chr5_1:4882511-4882530 | Msa0712970:intron | 45.0% | |
| !! | CAGACCGCTTTTGTTCTCTT+TGG | - | chr5_1:4882540-4882559 | Msa0712970:intron | 45.0% |
| AGGGCCAAAGAGAACAAAAG+CGG | + | chr5_1:4882547-4882566 | None:intergenic | 45.0% | |
| ATGTCATTCGAAGGAGAGTG+AGG | - | chr5_1:4882608-4882627 | Msa0712970:intron | 45.0% | |
| ACACACTCCCTTGCCCAAAA+AGG | - | chr5_1:4881085-4881104 | Msa0712970:CDS | 50.0% | |
| ! | CGTATGGGAGGGACCTTTTT+GGG | + | chr5_1:4881101-4881120 | None:intergenic | 50.0% |
| ! | TCGTATGGGAGGGACCTTTT+TGG | + | chr5_1:4881102-4881121 | None:intergenic | 50.0% |
| CCCTGCTCTCAGAAAAGACA+AGG | - | chr5_1:4881322-4881341 | Msa0712970:CDS | 50.0% | |
| CTTTCCTCATGAGAGTGGTG+AGG | + | chr5_1:4881595-4881614 | None:intergenic | 50.0% | |
| ! | GGAAAGGATCGGTGCTTGTT+TGG | + | chr5_1:4881774-4881793 | None:intergenic | 50.0% |
| !! | CAAAGAGCACCTTCTGGCAA+GGG | + | chr5_1:4882306-4882325 | None:intergenic | 50.0% |
| !! | ACAAAGAGCACCTTCTGGCA+AGG | + | chr5_1:4882307-4882326 | None:intergenic | 50.0% |
| !! | TGCCAGAAGGTGCTCTTTGT+TGG | - | chr5_1:4882307-4882326 | Msa0712970:intron | 50.0% |
| ACTACTCACAGAGGCCTAGA+AGG | - | chr5_1:4882381-4882400 | Msa0712970:intron | 50.0% | |
| AAAGACCAATCAGGAAGGCG+AGG | + | chr5_1:4882422-4882441 | None:intergenic | 50.0% | |
| ACATGTCGGTAAAACGGCTC+CGG | + | chr5_1:4882463-4882482 | None:intergenic | 50.0% | |
| GGCATTGCCATAACACTGCA+AGG | - | chr5_1:4882504-4882523 | Msa0712970:intron | 50.0% | |
| TACAACCGGACGGTAGCATA+GGG | + | chr5_1:4882566-4882585 | None:intergenic | 50.0% | |
| TCCTTCATGCTACAACCGGA+CGG | + | chr5_1:4882576-4882595 | None:intergenic | 50.0% | |
| !! | GCTGTCCTTGCTGTTCATGT+AGG | - | chr5_1:4882669-4882688 | Msa0712970:intron | 50.0% |
| ACACACTCCCTTGCCCAAAA+AGG | - | chr5_1:4881085-4881104 | Msa0712970:CDS | 50.0% | |
| ! | CGTATGGGAGGGACCTTTTT+GGG | + | chr5_1:4881101-4881120 | None:intergenic | 50.0% |
| ! | TCGTATGGGAGGGACCTTTT+TGG | + | chr5_1:4881102-4881121 | None:intergenic | 50.0% |
| CCCTGCTCTCAGAAAAGACA+AGG | - | chr5_1:4881322-4881341 | Msa0712970:CDS | 50.0% | |
| CTTTCCTCATGAGAGTGGTG+AGG | + | chr5_1:4881595-4881614 | None:intergenic | 50.0% | |
| ! | GGAAAGGATCGGTGCTTGTT+TGG | + | chr5_1:4881774-4881793 | None:intergenic | 50.0% |
| !! | CAAAGAGCACCTTCTGGCAA+GGG | + | chr5_1:4882306-4882325 | None:intergenic | 50.0% |
| !! | ACAAAGAGCACCTTCTGGCA+AGG | + | chr5_1:4882307-4882326 | None:intergenic | 50.0% |
| !! | TGCCAGAAGGTGCTCTTTGT+TGG | - | chr5_1:4882307-4882326 | Msa0712970:intron | 50.0% |
| ACTACTCACAGAGGCCTAGA+AGG | - | chr5_1:4882381-4882400 | Msa0712970:intron | 50.0% | |
| AAAGACCAATCAGGAAGGCG+AGG | + | chr5_1:4882422-4882441 | None:intergenic | 50.0% | |
| ACATGTCGGTAAAACGGCTC+CGG | + | chr5_1:4882463-4882482 | None:intergenic | 50.0% | |
| GGCATTGCCATAACACTGCA+AGG | - | chr5_1:4882504-4882523 | Msa0712970:intron | 50.0% | |
| TACAACCGGACGGTAGCATA+GGG | + | chr5_1:4882566-4882585 | None:intergenic | 50.0% | |
| TCCTTCATGCTACAACCGGA+CGG | + | chr5_1:4882576-4882595 | None:intergenic | 50.0% | |
| !! | GCTGTCCTTGCTGTTCATGT+AGG | - | chr5_1:4882669-4882688 | Msa0712970:intron | 50.0% |
| ! | GTGTTGGTGTGGCCAAGTGA+TGG | + | chr5_1:4881014-4881033 | None:intergenic | 55.0% |
| ! | TGGGCAAGGGAGTGTGTTAC+TGG | + | chr5_1:4881082-4881101 | None:intergenic | 55.0% |
| !! | GGAGGGACCTTTTTGGGCAA+GGG | + | chr5_1:4881095-4881114 | None:intergenic | 55.0% |
| TGCAAACGGGCCCTTAGAGA+TGG | + | chr5_1:4882048-4882067 | None:intergenic | 55.0% | |
| TTTGGCCCTATGCTACCGTC+CGG | - | chr5_1:4882558-4882577 | Msa0712970:intron | 55.0% | |
| CTACAACCGGACGGTAGCAT+AGG | + | chr5_1:4882567-4882586 | None:intergenic | 55.0% | |
| ACCGTCCGGTTGTAGCATGA+AGG | - | chr5_1:4882572-4882591 | Msa0712970:intron | 55.0% | |
| TCGAAGGAGAGTGAGGTTCG+TGG | - | chr5_1:4882615-4882634 | Msa0712970:intron | 55.0% | |
| ! | GTGTTGGTGTGGCCAAGTGA+TGG | + | chr5_1:4881014-4881033 | None:intergenic | 55.0% |
| ! | TGGGCAAGGGAGTGTGTTAC+TGG | + | chr5_1:4881082-4881101 | None:intergenic | 55.0% |
| !! | GGAGGGACCTTTTTGGGCAA+GGG | + | chr5_1:4881095-4881114 | None:intergenic | 55.0% |
| TGCAAACGGGCCCTTAGAGA+TGG | + | chr5_1:4882048-4882067 | None:intergenic | 55.0% | |
| TTTGGCCCTATGCTACCGTC+CGG | - | chr5_1:4882558-4882577 | Msa0712970:intron | 55.0% | |
| CTACAACCGGACGGTAGCAT+AGG | + | chr5_1:4882567-4882586 | None:intergenic | 55.0% | |
| ACCGTCCGGTTGTAGCATGA+AGG | - | chr5_1:4882572-4882591 | Msa0712970:intron | 55.0% | |
| TCGAAGGAGAGTGAGGTTCG+TGG | - | chr5_1:4882615-4882634 | Msa0712970:intron | 55.0% | |
| !! | GGGAGGGACCTTTTTGGGCA+AGG | + | chr5_1:4881096-4881115 | None:intergenic | 60.0% |
| GTCCTCCTCGCCTTCCTGAT+TGG | - | chr5_1:4882414-4882433 | Msa0712970:intron | 60.0% | |
| GACCAATCAGGAAGGCGAGG+AGG | + | chr5_1:4882419-4882438 | None:intergenic | 60.0% | |
| !! | GGGAGGGACCTTTTTGGGCA+AGG | + | chr5_1:4881096-4881115 | None:intergenic | 60.0% |
| GTCCTCCTCGCCTTCCTGAT+TGG | - | chr5_1:4882414-4882433 | Msa0712970:intron | 60.0% | |
| GACCAATCAGGAAGGCGAGG+AGG | + | chr5_1:4882419-4882438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4881002 | 4882758 | 4881002 | ID=Msa0712970;Name=Msa0712970 |
| chr5_1 | mRNA | 4881002 | 4882758 | 4881002 | ID=Msa0712970-mRNA-1;Parent=Msa0712970;Name=Msa0712970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|180 |
| chr5_1 | exon | 4882679 | 4882758 | 4882679 | ID=Msa0712970-mRNA-1:exon:2045;Parent=Msa0712970-mRNA-1 |
| chr5_1 | exon | 4881002 | 4881464 | 4881002 | ID=Msa0712970-mRNA-1:exon:2044;Parent=Msa0712970-mRNA-1 |
| chr5_1 | CDS | 4882679 | 4882758 | 4882679 | ID=Msa0712970-mRNA-1:cds;Parent=Msa0712970-mRNA-1 |
| chr5_1 | CDS | 4881002 | 4881464 | 4881002 | ID=Msa0712970-mRNA-1:cds;Parent=Msa0712970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
