Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713000 | XP_013446281.1 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713000 | sp|Q3T130|TM45B_BOVIN | 30.097 | 206 | 137 | 3 | 1 | 206 | 1 | 199 | 9.47e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713000 | A0A072TTZ7 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063890 | Msa0713000 | 0.812723 | 3.673629e-51 | -8.615850e-47 |
| Msa0093400 | Msa0713000 | 0.800028 | 1.746050e-48 | -8.615850e-47 |
| Msa0101440 | Msa0713000 | 0.812280 | 4.589027e-51 | -8.615850e-47 |
| Msa0703050 | Msa0713000 | 0.801236 | 9.902305e-49 | -8.615850e-47 |
| Msa0712970 | Msa0713000 | 0.802645 | 5.084434e-49 | -8.615850e-47 |
| Msa0713000 | Msa0728630 | 0.853314 | 2.594313e-61 | -8.615850e-47 |
| Msa0713000 | Msa0807470 | 0.839876 | 1.218597e-57 | -8.615850e-47 |
| Msa0713000 | Msa0938480 | 0.824341 | 8.506784e-54 | -8.615850e-47 |
| Msa0713000 | Msa0975640 | 0.809449 | 1.881720e-50 | -8.615850e-47 |
| Msa0713000 | Msa0981950 | 0.816726 | 4.765667e-52 | -8.615850e-47 |
| Msa0713000 | Msa1069310 | 0.802751 | 4.834294e-49 | -8.615850e-47 |
| Msa0713000 | Msa1229500 | 0.800204 | 1.607977e-48 | -8.615850e-47 |
| Msa0713000 | Msa1283860 | 0.803568 | 3.276030e-49 | -8.615850e-47 |
| Msa0713000 | Msa1302830 | 0.806152 | 9.450435e-50 | -8.615850e-47 |
| Msa0713000 | Msa1361650 | 0.860156 | 2.513307e-63 | -8.615850e-47 |
| Msa0713000 | Msa1373650 | 0.814877 | 1.231357e-51 | -8.615850e-47 |
| Msa0713000 | Msa1387870 | 0.810112 | 1.355449e-50 | -8.615850e-47 |
| Msa0713000 | Msa1419370 | 0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0225320 | Msa0713000 | 0.806890 | 6.603000e-50 | -8.615850e-47 |
| Msa0428590 | Msa0713000 | 0.801034 | 1.088999e-48 | -8.615850e-47 |
| Msa0548170 | Msa0713000 | 0.805423 | 1.344763e-49 | -8.615850e-47 |
| Msa0576880 | Msa0713000 | 0.814813 | 1.272399e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713000 | MtrunA17_Chr8g0369411 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 531 |
| Msa0713000 | MtrunA17_Chr5g0409571 | 73.485 | 264 | 70 | 0 | 1 | 264 | 1 | 264 | 3.22e-148 | 416 |
| Msa0713000 | MtrunA17_Chr8g0369401 | 72.515 | 171 | 47 | 0 | 99 | 269 | 1 | 171 | 8.56e-90 | 263 |
| Msa0713000 | MtrunA17_Chr4g0033971 | 32.157 | 255 | 154 | 5 | 1 | 244 | 1 | 247 | 5.93e-36 | 129 |
| Msa0713000 | MtrunA17_Chr2g0287431 | 30.682 | 264 | 160 | 8 | 1 | 254 | 1 | 251 | 6.83e-34 | 125 |
| Msa0713000 | MtrunA17_Chr1g0210731 | 29.104 | 268 | 175 | 6 | 6 | 262 | 3 | 266 | 6.85e-30 | 114 |
| Msa0713000 | MtrunA17_Chr1g0210721 | 28.163 | 245 | 149 | 7 | 6 | 237 | 6 | 236 | 4.25e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713000 | AT1G32127.2 | 70.881 | 261 | 76 | 0 | 1 | 261 | 1 | 261 | 2.98e-135 | 382 |
| Msa0713000 | AT1G32127.1 | 70.881 | 261 | 76 | 0 | 1 | 261 | 1 | 261 | 2.98e-135 | 382 |
| Msa0713000 | AT1G55240.1 | 35.510 | 245 | 146 | 5 | 1 | 237 | 1 | 241 | 3.50e-48 | 162 |
| Msa0713000 | AT1G55230.1 | 31.429 | 245 | 156 | 5 | 1 | 237 | 1 | 241 | 1.68e-42 | 147 |
| Msa0713000 | AT1G49470.1 | 33.333 | 264 | 147 | 7 | 1 | 245 | 1 | 254 | 1.69e-34 | 126 |
| Msa0713000 | AT5G19870.1 | 30.081 | 246 | 157 | 6 | 1 | 237 | 1 | 240 | 6.59e-34 | 124 |
Find 82 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCATCTTATTATTAAT+TGG | 0.103762 | 5_1:+4897104 | None:intergenic |
| TATTTCTTCTTGTTGGAGTA+TGG | 0.270558 | 5_1:-4898825 | Msa0713000:CDS |
| CAGTGTTGTTGATGACAAAA+AGG | 0.278953 | 5_1:+4899921 | None:intergenic |
| GGAACCTTATTTCTTCTTGT+TGG | 0.290898 | 5_1:-4898832 | Msa0713000:CDS |
| GAACTCTATGTTATTTCATT+TGG | 0.293822 | 5_1:-4898700 | Msa0713000:CDS |
| GGATTTGCAGCTTCAAGATA+TGG | 0.293962 | 5_1:-4897147 | Msa0713000:CDS |
| TGCCAGAAGGTGCTCTTTGT+TGG | 0.316256 | 5_1:-4897548 | Msa0713000:CDS |
| CCAGATTCCTTGCAGTGTTA+TGG | 0.333794 | 5_1:+4897344 | None:intergenic |
| TACTCCAACAAGAAGAAATA+AGG | 0.343384 | 5_1:+4898828 | None:intergenic |
| GGACATGATAATAGCCTTCT+AGG | 0.345352 | 5_1:+4897460 | None:intergenic |
| GCTCGAACTTGGAATGTCTT+AGG | 0.362458 | 5_1:+4898766 | None:intergenic |
| TTGTTGGAGTATGGCATATA+TGG | 0.364293 | 5_1:-4898816 | Msa0713000:CDS |
| GTCCTCCTCGCCTTCCTGAT+TGG | 0.367650 | 5_1:-4897441 | Msa0713000:CDS |
| TCTTCATCTTATTATTAATT+GGG | 0.367825 | 5_1:+4897105 | None:intergenic |
| GTAGGAACTATAGCTTCCTT+TGG | 0.382282 | 5_1:-4897168 | Msa0713000:CDS |
| CCATAACACTGCAAGGAATC+TGG | 0.398310 | 5_1:-4897344 | Msa0713000:CDS |
| CAACACTGAAGCTGTCATAT+TGG | 0.404444 | 5_1:-4899906 | Msa0713000:five_prime_UTR |
| TGAAGGACGGCTCAAGTACT+TGG | 0.407163 | 5_1:-4898722 | Msa0713000:CDS |
| CTCAAAGTTATTCAAGTAAG+TGG | 0.407532 | 5_1:+4898603 | None:intergenic |
| ACAAGAAGAAATAAGGTTCC+AGG | 0.414770 | 5_1:+4898835 | None:intergenic |
| TTTCCCAGTCGATTTATGTA+AGG | 0.418927 | 5_1:-4897373 | Msa0713000:CDS |
| ACTACTCACAGAGGCCTAGA+AGG | 0.420676 | 5_1:-4897474 | Msa0713000:CDS |
| CAAACATGCACTTAATCAAC+TGG | 0.424916 | 5_1:+4899062 | None:intergenic |
| ATGTAAATTTAAATAATATG+AGG | 0.430619 | 5_1:-4896946 | Msa0713000:three_prime_UTR |
| ATCCAACAAAGAGCACCTTC+TGG | 0.440213 | 5_1:+4897546 | None:intergenic |
| CAGGGTTCCAAGCTCGAACT+TGG | 0.443497 | 5_1:+4898755 | None:intergenic |
| CGTCCTTCAAATCCCGGTAC+AGG | 0.449912 | 5_1:+4898736 | None:intergenic |
| TGGGAAACATGTCGGTAAAA+CGG | 0.451333 | 5_1:+4897389 | None:intergenic |
| AACCCTGTACCGGGATTTGA+AGG | 0.463413 | 5_1:-4898739 | Msa0713000:CDS |
| AATAATATGAGGGAGTATCA+TGG | 0.464233 | 5_1:-4896935 | Msa0713000:three_prime_UTR |
| GCTGTCCTTGCTGTTCATGT+AGG | 0.470553 | 5_1:-4897186 | Msa0713000:CDS |
| TTCATAAAACTGCGGTGTAA+AGG | 0.472035 | 5_1:-4898983 | Msa0713000:five_prime_UTR |
| AGACATTCCAAGTTCGAGCT+TGG | 0.474473 | 5_1:-4898762 | Msa0713000:CDS |
| ATAAAATACAAAGACCAATC+AGG | 0.477833 | 5_1:+4897427 | None:intergenic |
| GATTTGCAGCTTCAAGATAT+GGG | 0.478619 | 5_1:-4897146 | Msa0713000:CDS |
| TTTGAATTATTTATTGAGAG+TGG | 0.486868 | 5_1:-4898903 | Msa0713000:five_prime_UTR |
| ATCAGCTGATGAGTCATTCA+AGG | 0.488488 | 5_1:-4899087 | Msa0713000:five_prime_UTR |
| TAGTTGGTATGTTTGCAAGA+TGG | 0.492217 | 5_1:-4899129 | Msa0713000:five_prime_UTR |
| ATTGTCCTTCATGCTACAAC+CGG | 0.496771 | 5_1:+4897278 | None:intergenic |
| TCGAGCTTGGAACCCTGTAC+CGG | 0.503496 | 5_1:-4898749 | Msa0713000:CDS |
| ATGCCCTTACATAAATCGAC+TGG | 0.514730 | 5_1:+4897369 | None:intergenic |
| TTCCCAGTCGATTTATGTAA+GGG | 0.527584 | 5_1:-4897372 | Msa0713000:CDS |
| TGTAAATTTAAATAATATGA+GGG | 0.528123 | 5_1:-4896945 | Msa0713000:three_prime_UTR |
| TTGAATAACTTTGAGCACTC+AGG | 0.530890 | 5_1:-4898595 | Msa0713000:CDS |
| TAAGTGCATGTTTGTTCTTG+TGG | 0.532631 | 5_1:-4899053 | Msa0713000:five_prime_UTR |
| CGAGCTTGGAACCCTGTACC+GGG | 0.537732 | 5_1:-4898748 | Msa0713000:CDS |
| ACAAAGAGCACCTTCTGGCA+AGG | 0.545375 | 5_1:+4897551 | None:intergenic |
| CCCTGCTCTCAGAAAAGACA+AGG | 0.556320 | 5_1:-4898537 | Msa0713000:intron |
| GAGACACAAGATTTACAAGC+TGG | 0.558481 | 5_1:-4898955 | Msa0713000:five_prime_UTR |
| TTTGGCCCTATGCTACCGTC+CGG | 0.562144 | 5_1:-4897297 | Msa0713000:CDS |
| ACATGTCGGTAAAACGGCTC+CGG | 0.564188 | 5_1:+4897395 | None:intergenic |
| CAAAGAGCACCTTCTGGCAA+GGG | 0.567003 | 5_1:+4897552 | None:intergenic |
| CTACAACCGGACGGTAGCAT+AGG | 0.567441 | 5_1:+4897291 | None:intergenic |
| TTGAGCCGTCCTTCAAATCC+CGG | 0.569317 | 5_1:+4898730 | None:intergenic |
| GTGCATGTTTGTTCTTGTGG+TGG | 0.571963 | 5_1:-4899050 | Msa0713000:five_prime_UTR |
| ATATGAAATGATGGAGGCTG+TGG | 0.583333 | 5_1:+4896866 | None:intergenic |
| TCGAAGGAGAGTGAGGTTCG+TGG | 0.586812 | 5_1:-4897240 | Msa0713000:CDS |
| TATGTGCTTATGTGATGAAG+TGG | 0.591289 | 5_1:-4897015 | Msa0713000:three_prime_UTR |
| ACCGTCCGGTTGTAGCATGA+AGG | 0.596841 | 5_1:-4897283 | Msa0713000:CDS |
| GGCATTGCCATAACACTGCA+AGG | 0.598058 | 5_1:-4897351 | Msa0713000:CDS |
| TGTTGTTACATGTCATTCGA+AGG | 0.601468 | 5_1:-4897256 | Msa0713000:CDS |
| GTCCTTCAAATCCCGGTACA+GGG | 0.603842 | 5_1:+4898737 | None:intergenic |
| TACAACCGGACGGTAGCATA+GGG | 0.608425 | 5_1:+4897292 | None:intergenic |
| AGATATATTCCCTTGCCAGA+AGG | 0.617393 | 5_1:-4897561 | Msa0713000:CDS |
| TCTTGAAGCTGCAAATCCAA+AGG | 0.618524 | 5_1:+4897152 | None:intergenic |
| AAATCGACTGGGAAACATGT+CGG | 0.624423 | 5_1:+4897381 | None:intergenic |
| ATGTCATTCGAAGGAGAGTG+AGG | 0.625750 | 5_1:-4897247 | Msa0713000:CDS |
| CTGTACCGGGATTTGAAGGA+CGG | 0.627212 | 5_1:-4898735 | Msa0713000:CDS |
| TGCCCTTACATAAATCGACT+GGG | 0.628576 | 5_1:+4897370 | None:intergenic |
| AAACTGCGGTGTAAAGGACA+TGG | 0.630078 | 5_1:-4898977 | Msa0713000:five_prime_UTR |
| GACCAATCAGGAAGGCGAGG+AGG | 0.633883 | 5_1:+4897439 | None:intergenic |
| AAAGACCAATCAGGAAGGCG+AGG | 0.635504 | 5_1:+4897436 | None:intergenic |
| TCCTTCATGCTACAACCGGA+CGG | 0.644939 | 5_1:+4897282 | None:intergenic |
| CTCTTTCTAGACAAATTGTG+CGG | 0.647493 | 5_1:-4899961 | None:intergenic |
| AATACAAAGACCAATCAGGA+AGG | 0.661377 | 5_1:+4897431 | None:intergenic |
| ATACTCTGCAGTGAATGCTG+TGG | 0.693297 | 5_1:+4897518 | None:intergenic |
| AGGGCCAAAGAGAACAAAAG+CGG | 0.695971 | 5_1:+4897311 | None:intergenic |
| TTTCTACCTTCATAAAACTG+CGG | 0.702010 | 5_1:-4898991 | Msa0713000:five_prime_UTR |
| TAGTTCCTACATGAACAGCA+AGG | 0.707671 | 5_1:+4897181 | None:intergenic |
| TTTCATTCAACTACTCACAG+AGG | 0.714436 | 5_1:-4897483 | Msa0713000:CDS |
| GTGGCATGAACGCAGCTATG+CGG | 0.727017 | 5_1:-4899031 | Msa0713000:five_prime_UTR |
| ATGGCATATATGGTGCTCTG+TGG | 0.727328 | 5_1:-4898806 | Msa0713000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATCTAAAAAAAAAAAC+AGG | - | chr5_1:4897670-4897689 | Msa0713000:intron | 10.0% |
| !!! | AATATTTTTCCATTTTTTAT+TGG | + | chr5_1:4898713-4898732 | None:intergenic | 10.0% |
| !! | ATGTAAATTTAAATAATATG+AGG | - | chr5_1:4899878-4899897 | Msa0713000:five_prime_UTR | 10.0% |
| !! | TGTAAATTTAAATAATATGA+GGG | - | chr5_1:4899879-4899898 | Msa0713000:five_prime_UTR | 10.0% |
| !! | AAATAATGTAGATTAGATAT+AGG | + | chr5_1:4897053-4897072 | None:intergenic | 15.0% |
| !! | TAAAAGTAAATCAGAAAAAT+GGG | - | chr5_1:4897944-4897963 | Msa0713000:intron | 15.0% |
| !! | TTGTAATTACCAATAAAAAA+TGG | - | chr5_1:4898701-4898720 | Msa0713000:CDS | 15.0% |
| !! | AAAATATATAACCAAGTTTA+AGG | + | chr5_1:4898994-4899013 | None:intergenic | 15.0% |
| !! | TCTTCATCTTATTATTAATT+GGG | + | chr5_1:4899722-4899741 | None:intergenic | 15.0% |
| !! | ATCTTCATCTTATTATTAAT+TGG | + | chr5_1:4899723-4899742 | None:intergenic | 15.0% |
| !! | AAAAAGAGTTGAATTTGAAA+GGG | - | chr5_1:4896969-4896988 | Msa0713000:three_prime_UTR | 20.0% |
| !!! | TTTTCCCTGAAAATTAATTA+GGG | - | chr5_1:4897164-4897183 | Msa0713000:CDS | 20.0% |
| !!! | TTTTGCTACAATTTATATCT+AGG | + | chr5_1:4897475-4897494 | None:intergenic | 20.0% |
| !!! | TTTCTACTTTGAAAGAAAAA+CGG | + | chr5_1:4897508-4897527 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAACAGGATTAGT+TGG | - | chr5_1:4897679-4897698 | Msa0713000:intron | 20.0% |
| !! | TTTGAATTATTTATTGAGAG+TGG | - | chr5_1:4897921-4897940 | Msa0713000:intron | 20.0% |
| !! | GTAAAAGTAAATCAGAAAAA+TGG | - | chr5_1:4897943-4897962 | Msa0713000:intron | 20.0% |
| !! | ATGTTATTCTACATGTTATT+TGG | - | chr5_1:4898361-4898380 | Msa0713000:intron | 20.0% |
| !!! | TGTTATTCTACATGTTATTT+GGG | - | chr5_1:4898362-4898381 | Msa0713000:intron | 20.0% |
| !! | AATAAACTAAGACTTAGTAA+AGG | + | chr5_1:4898641-4898660 | None:intergenic | 20.0% |
| !! | TTTACTAAGTCTTAGTTTAT+TGG | - | chr5_1:4898640-4898659 | Msa0713000:CDS | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4898849-4898868 | None:intergenic | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr5_1:4898849-4898868 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCCATCTCTA+AGG | - | chr5_1:4899003-4899022 | Msa0713000:five_prime_UTR | 20.0% |
| !!! | TATATATTTTCCATCTCTAA+GGG | - | chr5_1:4899004-4899023 | Msa0713000:five_prime_UTR | 20.0% |
| !! | CTTATTTCCATTAACATTTA+AGG | - | chr5_1:4899135-4899154 | Msa0713000:five_prime_UTR | 20.0% |
| !!! | TTTATTTTATCCTTAAGCTA+TGG | - | chr5_1:4899203-4899222 | Msa0713000:intron | 20.0% |
| !! | AAATAAATAACCATAGCTTA+AGG | + | chr5_1:4899216-4899235 | None:intergenic | 20.0% |
| !!! | TTATGTTTCCATTTTTTTGT+TGG | - | chr5_1:4899760-4899779 | Msa0713000:intron | 20.0% |
| ! | GAAAAAGAGTTGAATTTGAA+AGG | - | chr5_1:4896968-4896987 | Msa0713000:three_prime_UTR | 25.0% |
| !! | ATCAAATTTGTGATAATGAC+TGG | + | chr5_1:4897103-4897122 | None:intergenic | 25.0% |
| !! | GTTTTCCCTGAAAATTAATT+AGG | - | chr5_1:4897163-4897182 | Msa0713000:CDS | 25.0% |
| !! | CAATCCCTAATTAATTTTCA+GGG | + | chr5_1:4897171-4897190 | None:intergenic | 25.0% |
| !! | ACAATCCCTAATTAATTTTC+AGG | + | chr5_1:4897172-4897191 | None:intergenic | 25.0% |
| ! | TCTTTCAAAGTAGAAATAGT+TGG | - | chr5_1:4897512-4897531 | Msa0713000:CDS | 25.0% |
| !!! | AGTAGCTCAAAATTTTGATA+TGG | - | chr5_1:4897538-4897557 | Msa0713000:CDS | 25.0% |
| ! | AATAACATCTTATAACACGT+TGG | + | chr5_1:4897603-4897622 | None:intergenic | 25.0% |
| !! | GATGTTATTGAACTTTTATC+CGG | - | chr5_1:4897614-4897633 | Msa0713000:intron | 25.0% |
| !!! | GAACTCTATGTTATTTCATT+TGG | - | chr5_1:4898124-4898143 | Msa0713000:intron | 25.0% |
| ! | AGAATAACATCATTAGTAGT+AGG | + | chr5_1:4898351-4898370 | None:intergenic | 25.0% |
| !! | GTTATTCTACATGTTATTTG+GGG | - | chr5_1:4898363-4898382 | Msa0713000:intron | 25.0% |
| ! | ACAGTAAACAATATAAACTC+AGG | + | chr5_1:4898445-4898464 | None:intergenic | 25.0% |
| ! | TATATTGTTTACTGTCTTCA+AGG | - | chr5_1:4898450-4898469 | Msa0713000:intron | 25.0% |
| !!! | TTTAGTTTTGAGTAAACACA+AGG | - | chr5_1:4898670-4898689 | Msa0713000:CDS | 25.0% |
| ! | TGTTATTCAGATAATGATCA+AGG | + | chr5_1:4898785-4898804 | None:intergenic | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4898853-4898872 | Msa0713000:CDS | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr5_1:4898853-4898872 | Msa0713000:CDS | 25.0% |
| !! | GCTTATTTGAGTTTATCTAT+TGG | - | chr5_1:4899040-4899059 | Msa0713000:five_prime_UTR | 25.0% |
| ! | AAGCTATCCTTAAATGTTAA+TGG | + | chr5_1:4899145-4899164 | None:intergenic | 25.0% |
| ! | ACAGAATAAGATCAAATTAG+AGG | + | chr5_1:4899243-4899262 | None:intergenic | 25.0% |
| ! | ATAAAATACAAAGACCAATC+AGG | + | chr5_1:4899400-4899419 | None:intergenic | 25.0% |
| !! | TGTATTTTATCTTCAATTGC+CGG | - | chr5_1:4899410-4899429 | Msa0713000:intron | 25.0% |
| ! | TACATTCACCAACAAAAAAA+TGG | + | chr5_1:4899771-4899790 | None:intergenic | 25.0% |
| !! | AGTGTTGTTGATGACAAAAA+GGG | + | chr5_1:4896905-4896924 | None:intergenic | 30.0% |
| !! | GTTAATTTGCTCTAAGAAAC+TGG | - | chr5_1:4897134-4897153 | Msa0713000:CDS | 30.0% |
| ! | ATTGACTCTGATTGTAAGAA+AGG | - | chr5_1:4897251-4897270 | Msa0713000:CDS | 30.0% |
| ACACCTTCGAATCAAAATAT+GGG | + | chr5_1:4897309-4897328 | None:intergenic | 30.0% | |
| ! | TTTTATGAAGGTAGAAAGTC+AGG | + | chr5_1:4897830-4897849 | None:intergenic | 30.0% |
| TTTCTACCTTCATAAAACTG+CGG | - | chr5_1:4897833-4897852 | Msa0713000:intron | 30.0% | |
| AGAAAAATGGGATCTTTCAT+AGG | - | chr5_1:4897956-4897975 | Msa0713000:intron | 30.0% | |
| TACTCCAACAAGAAGAAATA+AGG | + | chr5_1:4897999-4898018 | None:intergenic | 30.0% | |
| TATTTCTTCTTGTTGGAGTA+TGG | - | chr5_1:4897999-4898018 | Msa0713000:intron | 30.0% | |
| !!! | ACACAACTGAAGTTTTTTGT+TGG | - | chr5_1:4898184-4898203 | Msa0713000:intron | 30.0% |
| CTCAAAGTTATTCAAGTAAG+TGG | + | chr5_1:4898224-4898243 | None:intergenic | 30.0% | |
| !! | CTTCTGATGTTTTTGATCTT+CGG | - | chr5_1:4898256-4898275 | Msa0713000:intron | 30.0% |
| TTAGTAGTAGGTTGTGTTTA+AGG | + | chr5_1:4898339-4898358 | None:intergenic | 30.0% | |
| ATGTGATAATACACACACTT+AGG | - | chr5_1:4898524-4898543 | Msa0713000:intron | 30.0% | |
| TGAAAATGGAAAAGAAGGAA+AGG | + | chr5_1:4898759-4898778 | None:intergenic | 30.0% | |
| AATGATCAAGGAAGTGAAAA+TGG | + | chr5_1:4898773-4898792 | None:intergenic | 30.0% | |
| ACCAAGTTTAAGGACAAAAA+TGG | + | chr5_1:4898984-4899003 | None:intergenic | 30.0% | |
| TCAAATAAGCTTATGCAAAC+GGG | + | chr5_1:4899030-4899049 | None:intergenic | 30.0% | |
| CTCAAATAAGCTTATGCAAA+CGG | + | chr5_1:4899031-4899050 | None:intergenic | 30.0% | |
| !! | AATAATATGAGGGAGTATCA+TGG | - | chr5_1:4899889-4899908 | Msa0713000:five_prime_UTR | 30.0% |
| !! | CAGTGTTGTTGATGACAAAA+AGG | + | chr5_1:4896906-4896925 | None:intergenic | 35.0% |
| ! | GTTTTCCTGAAAAAGTCAAG+TGG | - | chr5_1:4897199-4897218 | Msa0713000:CDS | 35.0% |
| !! | TCATACCACTTGACTTTTTC+AGG | + | chr5_1:4897207-4897226 | None:intergenic | 35.0% |
| GAAAAAGTCAAGTGGTATGA+AGG | - | chr5_1:4897207-4897226 | Msa0713000:CDS | 35.0% | |
| AGTGGTATGAAGGATATCTT+TGG | - | chr5_1:4897217-4897236 | Msa0713000:CDS | 35.0% | |
| GTATGAAGGATATCTTTGGA+AGG | - | chr5_1:4897221-4897240 | Msa0713000:CDS | 35.0% | |
| TCTTACAATCAGAGTCAATG+AGG | + | chr5_1:4897250-4897269 | None:intergenic | 35.0% | |
| CTCTGATTGTAAGAAAGGAA+AGG | - | chr5_1:4897256-4897275 | Msa0713000:CDS | 35.0% | |
| CACACCTTCGAATCAAAATA+TGG | + | chr5_1:4897310-4897329 | None:intergenic | 35.0% | |
| TGACATATGTAAGTAGGCAT+GGG | + | chr5_1:4897416-4897435 | None:intergenic | 35.0% | |
| ACTGACTGACATATGTAAGT+AGG | + | chr5_1:4897422-4897441 | None:intergenic | 35.0% | |
| AACTTTCAATGACGACTTTC+CGG | + | chr5_1:4897636-4897655 | None:intergenic | 35.0% | |
| ! | TAGTTGGTATGTTTGCAAGA+TGG | - | chr5_1:4897695-4897714 | Msa0713000:intron | 35.0% |
| CAAACATGCACTTAATCAAC+TGG | + | chr5_1:4897765-4897784 | None:intergenic | 35.0% | |
| TAAGTGCATGTTTGTTCTTG+TGG | - | chr5_1:4897771-4897790 | Msa0713000:intron | 35.0% | |
| !! | TTTACACCGCAGTTTTATGA+AGG | + | chr5_1:4897842-4897861 | None:intergenic | 35.0% |
| TTCATAAAACTGCGGTGTAA+AGG | - | chr5_1:4897841-4897860 | Msa0713000:intron | 35.0% | |
| ! | TTCATAGGTCATATTTTGCC+TGG | - | chr5_1:4897971-4897990 | Msa0713000:intron | 35.0% |
| ACAAGAAGAAATAAGGTTCC+AGG | + | chr5_1:4897992-4898011 | None:intergenic | 35.0% | |
| ! | GGAACCTTATTTCTTCTTGT+TGG | - | chr5_1:4897992-4898011 | Msa0713000:intron | 35.0% |
| TTGTTGGAGTATGGCATATA+TGG | - | chr5_1:4898008-4898027 | Msa0713000:intron | 35.0% | |
| !!! | CAACTGAAGTTTTTTGTTGG+TGG | - | chr5_1:4898187-4898206 | Msa0713000:intron | 35.0% |
| TTGAATAACTTTGAGCACTC+AGG | - | chr5_1:4898229-4898248 | Msa0713000:intron | 35.0% | |
| TTTGGGGAAAATAGATGCTA+TGG | - | chr5_1:4898379-4898398 | Msa0713000:intron | 35.0% | |
| ! | GAGATGGTAATGCTTATAAG+TGG | - | chr5_1:4898472-4898491 | Msa0713000:intron | 35.0% |
| AAGTGGAGTGTACAAATTCT+TGG | - | chr5_1:4898489-4898508 | Msa0713000:intron | 35.0% | |
| AGTGGAGTGTACAAATTCTT+GGG | - | chr5_1:4898490-4898509 | Msa0713000:intron | 35.0% | |
| ATGCATACTTCATGCACATT+AGG | - | chr5_1:4898586-4898605 | Msa0713000:CDS | 35.0% | |
| TGCATACTTCATGCACATTA+GGG | - | chr5_1:4898587-4898606 | Msa0713000:CDS | 35.0% | |
| ATGGAAAAGAAGGAAAGGAT+CGG | + | chr5_1:4898754-4898773 | None:intergenic | 35.0% | |
| GGAAGTGAAAATGGAAAAGA+AGG | + | chr5_1:4898764-4898783 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGTCCTTAAACT+TGG | - | chr5_1:4898980-4898999 | Msa0713000:five_prime_UTR | 35.0% |
| ! | TAAGCACTTGTTAGACTGTT+TGG | - | chr5_1:4899065-4899084 | Msa0713000:five_prime_UTR | 35.0% |
| ! | AAGCACTTGTTAGACTGTTT+GGG | - | chr5_1:4899066-4899085 | Msa0713000:five_prime_UTR | 35.0% |
| TTTCATTCAACTACTCACAG+AGG | - | chr5_1:4899341-4899360 | Msa0713000:intron | 35.0% | |
| AATACAAAGACCAATCAGGA+AGG | + | chr5_1:4899396-4899415 | None:intergenic | 35.0% | |
| ! | TTTCCCAGTCGATTTATGTA+AGG | - | chr5_1:4899451-4899470 | Msa0713000:intron | 35.0% |
| ! | TTCCCAGTCGATTTATGTAA+GGG | - | chr5_1:4899452-4899471 | Msa0713000:intron | 35.0% |
| TGTTGTTACATGTCATTCGA+AGG | - | chr5_1:4899568-4899587 | Msa0713000:intron | 35.0% | |
| GATTTGCAGCTTCAAGATAT+GGG | - | chr5_1:4899678-4899697 | Msa0713000:intron | 35.0% | |
| TATGTGCTTATGTGATGAAG+TGG | - | chr5_1:4899809-4899828 | Msa0713000:intron | 35.0% | |
| !! | GTGATGAAGTGGTTTTTAGA+AGG | - | chr5_1:4899820-4899839 | Msa0713000:five_prime_UTR | 35.0% |
| CAACACTGAAGCTGTCATAT+TGG | - | chr5_1:4896918-4896937 | Msa0713000:three_prime_UTR | 40.0% | |
| CCTTCGAATCAAAATATGGG+TGG | + | chr5_1:4897306-4897325 | None:intergenic | 40.0% | |
| !!! | CCACCCATATTTTGATTCGA+AGG | - | chr5_1:4897303-4897322 | Msa0713000:CDS | 40.0% |
| GTAATCACATGTGTCAGTGT+CGG | + | chr5_1:4897362-4897381 | None:intergenic | 40.0% | |
| CTGACATATGTAAGTAGGCA+TGG | + | chr5_1:4897417-4897436 | None:intergenic | 40.0% | |
| ATGTCAGTCAGTATGAGTGT+CGG | - | chr5_1:4897430-4897449 | Msa0713000:CDS | 40.0% | |
| ATCAGCTGATGAGTCATTCA+AGG | - | chr5_1:4897737-4897756 | Msa0713000:intron | 40.0% | |
| GAGACACAAGATTTACAAGC+TGG | - | chr5_1:4897869-4897888 | Msa0713000:intron | 40.0% | |
| CTCTCAGAAAAGACAAGGTT+AGG | - | chr5_1:4898292-4898311 | Msa0713000:intron | 40.0% | |
| !! | AGGTGTTGTTGTTATGTTCC+TGG | - | chr5_1:4898312-4898331 | Msa0713000:intron | 40.0% |
| GTTTACTGTCTTCAAGGAGA+TGG | - | chr5_1:4898456-4898475 | Msa0713000:intron | 40.0% | |
| AGATATATTCCCTTGCCAGA+AGG | - | chr5_1:4899263-4899282 | Msa0713000:intron | 40.0% | |
| GGACATGATAATAGCCTTCT+AGG | + | chr5_1:4899367-4899386 | None:intergenic | 40.0% | |
| TGGGAAACATGTCGGTAAAA+CGG | + | chr5_1:4899438-4899457 | None:intergenic | 40.0% | |
| AAATCGACTGGGAAACATGT+CGG | + | chr5_1:4899446-4899465 | None:intergenic | 40.0% | |
| TGCCCTTACATAAATCGACT+GGG | + | chr5_1:4899457-4899476 | None:intergenic | 40.0% | |
| ATGCCCTTACATAAATCGAC+TGG | + | chr5_1:4899458-4899477 | None:intergenic | 40.0% | |
| ATTGTCCTTCATGCTACAAC+CGG | + | chr5_1:4899549-4899568 | None:intergenic | 40.0% | |
| TAGTTCCTACATGAACAGCA+AGG | + | chr5_1:4899646-4899665 | None:intergenic | 40.0% | |
| GTAGGAACTATAGCTTCCTT+TGG | - | chr5_1:4899656-4899675 | Msa0713000:intron | 40.0% | |
| TCTTGAAGCTGCAAATCCAA+AGG | + | chr5_1:4899675-4899694 | None:intergenic | 40.0% | |
| GGATTTGCAGCTTCAAGATA+TGG | - | chr5_1:4899677-4899696 | Msa0713000:intron | 40.0% | |
| GTGCATGTTTGTTCTTGTGG+TGG | - | chr5_1:4897774-4897793 | Msa0713000:intron | 45.0% | |
| AAACTGCGGTGTAAAGGACA+TGG | - | chr5_1:4897847-4897866 | Msa0713000:intron | 45.0% | |
| ATGGCATATATGGTGCTCTG+TGG | - | chr5_1:4898018-4898037 | Msa0713000:intron | 45.0% | |
| GCTCGAACTTGGAATGTCTT+AGG | + | chr5_1:4898061-4898080 | None:intergenic | 45.0% | |
| AGACATTCCAAGTTCGAGCT+TGG | - | chr5_1:4898062-4898081 | Msa0713000:intron | 45.0% | |
| !! | CCTTGTCTTTTCTGAGAGCA+GGG | + | chr5_1:4898290-4898309 | None:intergenic | 45.0% |
| !! | ACCTTGTCTTTTCTGAGAGC+AGG | + | chr5_1:4898291-4898310 | None:intergenic | 45.0% |
| GTAGGTTGTGTTTAAGGACC+AGG | + | chr5_1:4898333-4898352 | None:intergenic | 45.0% | |
| AATACCTCACCACTCTCATG+AGG | - | chr5_1:4898557-4898576 | Msa0713000:CDS | 45.0% | |
| CATGACTTTCCTCATGAGAG+TGG | + | chr5_1:4898569-4898588 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr5_1:4899077-4899096 | Msa0713000:five_prime_UTR | 45.0% | |
| !! | ATCCAACAAAGAGCACCTTC+TGG | + | chr5_1:4899281-4899300 | None:intergenic | 45.0% |
| ATACTCTGCAGTGAATGCTG+TGG | + | chr5_1:4899309-4899328 | None:intergenic | 45.0% | |
| CCAGATTCCTTGCAGTGTTA+TGG | + | chr5_1:4899483-4899502 | None:intergenic | 45.0% | |
| CCATAACACTGCAAGGAATC+TGG | - | chr5_1:4899480-4899499 | Msa0713000:intron | 45.0% | |
| !! | CAGACCGCTTTTGTTCTCTT+TGG | - | chr5_1:4899509-4899528 | Msa0713000:intron | 45.0% |
| AGGGCCAAAGAGAACAAAAG+CGG | + | chr5_1:4899516-4899535 | None:intergenic | 45.0% | |
| ATGTCATTCGAAGGAGAGTG+AGG | - | chr5_1:4899577-4899596 | Msa0713000:intron | 45.0% | |
| AACCCTGTACCGGGATTTGA+AGG | - | chr5_1:4898085-4898104 | Msa0713000:intron | 50.0% | |
| GTCCTTCAAATCCCGGTACA+GGG | + | chr5_1:4898090-4898109 | None:intergenic | 50.0% | |
| CTGTACCGGGATTTGAAGGA+CGG | - | chr5_1:4898089-4898108 | Msa0713000:intron | 50.0% | |
| TTGAGCCGTCCTTCAAATCC+CGG | + | chr5_1:4898097-4898116 | None:intergenic | 50.0% | |
| TGAAGGACGGCTCAAGTACT+TGG | - | chr5_1:4898102-4898121 | Msa0713000:intron | 50.0% | |
| CCCTGCTCTCAGAAAAGACA+AGG | - | chr5_1:4898287-4898306 | Msa0713000:intron | 50.0% | |
| CTTTCCTCATGAGAGTGGTG+AGG | + | chr5_1:4898564-4898583 | None:intergenic | 50.0% | |
| ! | GGAAAGGATCGGTGCTTGTT+TGG | + | chr5_1:4898743-4898762 | None:intergenic | 50.0% |
| !! | CAAAGAGCACCTTCTGGCAA+GGG | + | chr5_1:4899275-4899294 | None:intergenic | 50.0% |
| !! | ACAAAGAGCACCTTCTGGCA+AGG | + | chr5_1:4899276-4899295 | None:intergenic | 50.0% |
| !! | TGCCAGAAGGTGCTCTTTGT+TGG | - | chr5_1:4899276-4899295 | Msa0713000:intron | 50.0% |
| ACTACTCACAGAGGCCTAGA+AGG | - | chr5_1:4899350-4899369 | Msa0713000:intron | 50.0% | |
| AAAGACCAATCAGGAAGGCG+AGG | + | chr5_1:4899391-4899410 | None:intergenic | 50.0% | |
| ACATGTCGGTAAAACGGCTC+CGG | + | chr5_1:4899432-4899451 | None:intergenic | 50.0% | |
| GGCATTGCCATAACACTGCA+AGG | - | chr5_1:4899473-4899492 | Msa0713000:intron | 50.0% | |
| TACAACCGGACGGTAGCATA+GGG | + | chr5_1:4899535-4899554 | None:intergenic | 50.0% | |
| TCCTTCATGCTACAACCGGA+CGG | + | chr5_1:4899545-4899564 | None:intergenic | 50.0% | |
| !! | GCTGTCCTTGCTGTTCATGT+AGG | - | chr5_1:4899638-4899657 | Msa0713000:intron | 50.0% |
| GTGGCATGAACGCAGCTATG+CGG | - | chr5_1:4897793-4897812 | Msa0713000:intron | 55.0% | |
| CAGGGTTCCAAGCTCGAACT+TGG | + | chr5_1:4898072-4898091 | None:intergenic | 55.0% | |
| TCGAGCTTGGAACCCTGTAC+CGG | - | chr5_1:4898075-4898094 | Msa0713000:intron | 55.0% | |
| CGTCCTTCAAATCCCGGTAC+AGG | + | chr5_1:4898091-4898110 | None:intergenic | 55.0% | |
| TGCAAACGGGCCCTTAGAGA+TGG | + | chr5_1:4899017-4899036 | None:intergenic | 55.0% | |
| TTTGGCCCTATGCTACCGTC+CGG | - | chr5_1:4899527-4899546 | Msa0713000:intron | 55.0% | |
| CTACAACCGGACGGTAGCAT+AGG | + | chr5_1:4899536-4899555 | None:intergenic | 55.0% | |
| ACCGTCCGGTTGTAGCATGA+AGG | - | chr5_1:4899541-4899560 | Msa0713000:intron | 55.0% | |
| TCGAAGGAGAGTGAGGTTCG+TGG | - | chr5_1:4899584-4899603 | Msa0713000:intron | 55.0% | |
| CGAGCTTGGAACCCTGTACC+GGG | - | chr5_1:4898076-4898095 | Msa0713000:intron | 60.0% | |
| GTCCTCCTCGCCTTCCTGAT+TGG | - | chr5_1:4899383-4899402 | Msa0713000:intron | 60.0% | |
| GACCAATCAGGAAGGCGAGG+AGG | + | chr5_1:4899388-4899407 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4896877 | 4899969 | 4896877 | ID=Msa0713000;Name=Msa0713000 |
| chr5_1 | mRNA | 4896877 | 4899969 | 4896877 | ID=Msa0713000-mRNA-1;Parent=Msa0713000;Name=Msa0713000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=428|1|1|1|0.5|0.33|3|242|269 |
| chr5_1 | exon | 4896877 | 4897581 | 4896877 | ID=Msa0713000-mRNA-1:exon:2107;Parent=Msa0713000-mRNA-1 |
| chr5_1 | exon | 4898538 | 4899154 | 4898538 | ID=Msa0713000-mRNA-1:exon:2106;Parent=Msa0713000-mRNA-1 |
| chr5_1 | exon | 4899812 | 4899969 | 4899812 | ID=Msa0713000-mRNA-1:exon:2105;Parent=Msa0713000-mRNA-1 |
| chr5_1 | five_prime_UTR | 4899812 | 4899969 | 4899812 | ID=Msa0713000-mRNA-1:five_prime_utr;Parent=Msa0713000-mRNA-1 |
| chr5_1 | five_prime_UTR | 4898885 | 4899154 | 4898885 | ID=Msa0713000-mRNA-1:five_prime_utr;Parent=Msa0713000-mRNA-1 |
| chr5_1 | CDS | 4898538 | 4898884 | 4898538 | ID=Msa0713000-mRNA-1:cds;Parent=Msa0713000-mRNA-1 |
| chr5_1 | CDS | 4897119 | 4897581 | 4897119 | ID=Msa0713000-mRNA-1:cds;Parent=Msa0713000-mRNA-1 |
| chr5_1 | three_prime_UTR | 4896877 | 4897118 | 4896877 | ID=Msa0713000-mRNA-1:three_prime_utr;Parent=Msa0713000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
