AlfalfaGEDB | Msa0713740

M. sativa cultivar zhongmu-4 / Msa0713740

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713740	QSD99654.1	93.082	318	17	1	1	313	1	318	0.0	594

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713740	sp\|Q9M2Y9\|RAX3_ARATH	48.232	311	126	6	1	284	1	303	3.92e-85	261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713740	A0A896W228	93.082	318	17	1	1	313	1	318	0.0	594

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TFs/TRs:

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Gene ID	Type	Classification
Msa0713740	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0685020	Msa0713740	0.804327	2.277813e-49	-8.615850e-47
Msa0713740	Msa0797580	0.816915	4.323445e-52	-8.615850e-47
Msa0713740	Msa0931680	0.827267	1.719005e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713740	MtrunA17_Chr5g0400821	92.767	318	9	3	1	313	1	309	0.0	580
Msa0713740	MtrunA17_Chr4g0054391	54.232	319	107	12	1	310	1	289	7.27e-93	277
Msa0713740	MtrunA17_Chr1g0152011	78.107	169	32	2	1	166	1	167	6.79e-91	274
Msa0713740	MtrunA17_Chr3g0135311	69.942	173	50	1	1	173	1	171	2.46e-85	260
Msa0713740	MtrunA17_Chr4g0072751	95.495	111	5	0	1	111	1	111	6.41e-76	236
Msa0713740	MtrunA17_Chr4g0028311	85.124	121	18	0	1	121	1	121	4.28e-75	233
Msa0713740	MtrunA17_Chr7g0264641	69.718	142	43	0	1	142	1	142	1.39e-72	225
Msa0713740	MtrunA17_Chr2g0327351	88.288	111	13	0	1	111	1	111	1.47e-71	224
Msa0713740	MtrunA17_Chr1g0151941	77.966	118	26	0	1	118	1	118	1.11e-67	212
Msa0713740	MtrunA17_Chr6g0487491	70.079	127	30	1	1	119	1	127	2.63e-62	198

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713740	AT3G49690.1	48.232	311	126	6	1	284	1	303	3.99e-86	261
Msa0713740	AT5G65790.1	87.943	141	10	2	1	141	1	134	2.90e-85	261
Msa0713740	AT5G57620.1	90.244	123	12	0	1	123	1	123	8.99e-81	248
Msa0713740	AT4G37780.1	79.545	132	27	0	1	132	1	132	2.19e-76	236
Msa0713740	AT2G36890.1	83.193	119	20	0	1	119	1	119	3.52e-72	225
Msa0713740	AT2G36890.2	83.193	119	20	0	1	119	42	160	5.03e-72	226
Msa0713740	AT5G23000.1	64.286	154	55	0	1	154	1	154	1.81e-69	219
Msa0713740	AT5G56110.1	68.067	119	37	1	1	119	1	118	3.94e-55	182
Msa0713740	AT3G01140.2	64.407	118	41	1	1	118	1	117	1.79e-52	176
Msa0713740	AT5G15310.4	63.559	118	42	1	1	118	1	117	2.96e-52	172

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Find 73 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATACCAACAAACA+TGG	0.575376	5_1:+6080916	Msa0713740:exon
AAAATGGTACTGGTGGAAAT+TGG	0.309864	5_1:+6081026	Msa0713740:CDS
AAACTCATACCAACAAACAT+GGG	0.665666	5_1:+6080917	Msa0713740:exon
AAAGGATTTGTGTATATGGG+GGG	0.578676	5_1:+6082290	Msa0713740:exon
AAATCAGAATTTGATGGTGG+CGG	0.512314	5_1:+6081784	Msa0713740:CDS
AACCATCAAATATATTTCAA+GGG	0.521432	5_1:+6081999	Msa0713740:CDS
AACCCTTGAAATATATTTGA+TGG	0.289827	5_1:-6082001	None:intergenic
AAGCCACCATGTTTAATATT+TGG	0.164222	5_1:-6081306	None:intergenic
AAGGATTTGTGTATATGGGG+GGG	0.656070	5_1:+6082291	Msa0713740:exon
AAGTCTTACATAGAACAAAA+TGG	0.418654	5_1:+6081010	Msa0713740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCATACCAACAAACA+TGG	+	chr5_1:6080916-6080935	Msa0713740:exon	30.0%
AAACTCATACCAACAAACAT+GGG	+	chr5_1:6080917-6080936	Msa0713740:exon	30.0%
TACATAGAACAAAATGGTAC+TGG	+	chr5_1:6081016-6081035	Msa0713740:CDS	30.0%
AGACCAAATATTAAACATGG+TGG	+	chr5_1:6081303-6081322	Msa0713740:CDS	30.0%
AAGCCACCATGTTTAATATT+TGG	-	chr5_1:6081309-6081328	None:intergenic	30.0%
AATAATGTCGTCTTCTTCTT+CGG	-	chr5_1:6081334-6081353	None:intergenic	30.0%
TTATTTCCAAGTAGATAGCT+CGG	-	chr5_1:6081515-6081534	None:intergenic	30.0%
GTATTACTCACAATGGAAAA+AGG	-	chr5_1:6081953-6081972	None:intergenic	30.0%
TGTGAACCAACAACAAATAA+TGG	+	chr5_1:6082060-6082079	Msa0713740:CDS	30.0%
TTGGAATGCAAATGCAATAA+AGG	+	chr5_1:6082272-6082291	Msa0713740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6080896	6082359	6080896	ID=Msa0713740;Name=Msa0713740
chr5_1	mRNA	6080896	6082359	6080896	ID=Msa0713740-mRNA-1;Parent=Msa0713740;Name=Msa0713740-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39\|1\|1\|1\|1\|1\|3\|68\|313
chr5_1	exon	6080896	6081070	6080896	ID=Msa0713740-mRNA-1:exon:2596;Parent=Msa0713740-mRNA-1
chr5_1	exon	6081253	6081382	6081253	ID=Msa0713740-mRNA-1:exon:2597;Parent=Msa0713740-mRNA-1
chr5_1	exon	6081616	6082359	6081616	ID=Msa0713740-mRNA-1:exon:2598;Parent=Msa0713740-mRNA-1
chr5_1	five_prime_UTR	6080896	6080934	6080896	ID=Msa0713740-mRNA-1:five_prime_utr;Parent=Msa0713740-mRNA-1
chr5_1	CDS	6080935	6081070	6080935	ID=Msa0713740-mRNA-1:cds;Parent=Msa0713740-mRNA-1
chr5_1	CDS	6081253	6081382	6081253	ID=Msa0713740-mRNA-1:cds;Parent=Msa0713740-mRNA-1
chr5_1	CDS	6081616	6082291	6081616	ID=Msa0713740-mRNA-1:cds;Parent=Msa0713740-mRNA-1
chr5_1	three_prime_UTR	6082292	6082359	6082292	ID=Msa0713740-mRNA-1:three_prime_utr;Parent=Msa0713740-mRNA-1

Gene Sequence

>Msa0713740

ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCAAAACTCAAGTCTTACATAGAACAAAATGGTACTGGTGGAAATTGGATTGCTCTACCTCAAAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGTTAAATTATCTTAGACCAAATATTAAACATGGTGGCTTCTCCGAAGAAGAAGACGACATTATTTGCAGCCTCTATGTTAGCATCGGAAGCAGGTGGTCTATCATAGCAGCACAATTACCAGGACGAACGGATAATGATATAAAGAACTACTGGAACACTAGGTTGAAGAAGAAGCTCCTTGGGAAACAAAGGAAGGAGCAACAAGCTCAAGCACAAGCTCGCCGAGTTAGCAACATGAAACAAGAGATGAAAAGAGAAATAAATCAGAATTTGATGGTGGCGGCTTCGGGTGTCAATAATATGAGTTCAGCTCCTTATTGGCCTGCAGAGTATTCTGTTCATCCTATGCCAGTTTCAAATTCATCCATAATTGATTATGATATGAACAATCAAACATCTTTCACAAGCTTAATGAACATTCCAAACCCTTTTTCCATTGTGAGTAATACAATTACAAACAATGGTGGAAATTGCCAACCATCAAATATATTTCAAGGGTTTGAAAATTTTCCAAGGGATTTAAGTGAGCTTGTATGTGTGAACCAACAACAAATAATGGATAGAACAATTGATGGTTTTTATGGAATGGAATCTATTGACATGAGCAATGGTGGTAGCACAATCACAACAACTTCAACAGAAAGCACTAGTTGGGGAGATATGAACTCTTTGGTTTATGACTATGAAGGTTGTTGCCAACAAGGATCAGTTCCACAAGATGCTATTGCTTTTGAGGAGTCTAGGTATTTTGGAATGCAAATGCAATAA

Protein sequence

>Msa0713740

MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQARRVSNMKQEMKREINQNLMVAASGVNNMSSAPYWPAEYSVHPMPVSNSSIIDYDMNNQTSFTSLMNIPNPFSIVSNTITNNGGNCQPSNIFQGFENFPRDLSELVCVNQQQIMDRTIDGFYGMESIDMSNGGSTITTTSTESTSWGDMNSLVYDYEGCCQQGSVPQDAIAFEESRYFGMQMQ*