AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713800 MtrunA17_Chr5g0401061 98.980 294 3 0 1 294 1 294 0.0 587
Msa0713800 MtrunA17_Chr4g0054131 65.806 310 89 6 1 294 1 309 1.15e-105 310
Msa0713800 MtrunA17_Chr2g0293381 48.133 241 118 5 1 236 1 239 1.75e-65 207
Msa0713800 MtrunA17_Chr8g0384671 48.117 239 119 5 1 236 1 237 1.98e-63 202
Msa0713800 MtrunA17_Chr1g0166681 66.292 89 28 1 1 89 1 87 4.69e-33 120
Msa0713800 MtrunA17_Chr8g0342871 32.740 281 162 5 1 270 1 265 6.74e-32 119
Msa0713800 MtrunA17_Chr8g0383821 43.519 108 60 1 1 107 1 108 6.89e-24 94.4
Msa0713800 MtrunA17_Chr2g0329921 72.414 58 16 0 1 58 1 58 5.77e-22 93.6
Msa0713800 MtrunA17_Chr1g0195261 66.000 50 17 0 1 50 1 50 4.05e-16 71.2
Msa0713800 MtrunA17_Chr1g0195251 38.017 121 71 2 121 241 295 411 4.72e-14 72.0
Msa0713800 MtrunA17_Chr3g0107471 60.377 53 17 2 5 56 569 618 6.10e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713800 AT5G67580.2 53.925 293 131 1 1 289 1 293 2.22e-76 235
Msa0713800 AT5G67580.1 53.925 293 131 1 1 289 1 293 2.22e-76 235
Msa0713800 AT1G49950.3 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0713800 AT1G49950.1 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0713800 AT1G49950.2 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0713800 AT3G49850.1 51.186 295 132 5 1 289 1 289 7.48e-67 211
Msa0713800 AT3G49850.2 51.186 295 132 5 1 289 1 289 7.48e-67 211
Msa0713800 AT1G72740.2 33.798 287 167 5 1 284 1 267 6.84e-32 120
Msa0713800 AT1G72740.1 33.798 287 173 6 1 284 1 273 2.77e-30 115
Msa0713800 AT1G17520.4 35.500 200 112 3 1 187 1 196 7.55e-29 112
Msa0713800 AT1G17520.1 32.302 291 163 7 1 275 1 273 1.85e-28 111
Msa0713800 AT1G17520.3 35.821 201 111 4 1 187 1 197 3.68e-28 110
Msa0713800 AT1G17520.2 32.534 292 162 8 1 275 1 274 8.97e-28 109

Find 125 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGCCTCTTTCAGTTTC+TGG 0.037607 5_1:+6239285 Msa0713800:CDS
TATATTCCTGGGAATGTATT+TGG 0.155401 5_1:-6242154 None:intergenic
ATGTGCAATTGAAGTTAATT+TGG 0.194499 5_1:+6238069 Msa0713800:five_prime_UTR
TAGAAACATTGCCAAATCTT+AGG 0.197424 5_1:-6242373 None:intergenic
GGCTTAGGAGCTGCAACTTC+TGG 0.214227 5_1:-6239270 None:intergenic
AATGCAGAAGACTTAATATT+TGG 0.225595 5_1:+6241820 Msa0713800:CDS
CTGTTCATGGATTGGTTTAT+AGG 0.229623 5_1:+6242438 Msa0713800:three_prime_UTR
CGCAAAATGGTGCTGAAATC+TGG 0.244024 5_1:-6238850 None:intergenic
TAACCTTGATATTTGTTCTT+TGG 0.249384 5_1:-6239322 None:intergenic
GAACCAGTTTGCTTTGATTC+AGG 0.268324 5_1:-6242520 None:intergenic
AGCATTCAAAATGGGCTAAA+AGG 0.270295 5_1:-6241904 None:intergenic
ATGCATTAAGTAATGTTTCT+TGG 0.282657 5_1:-6241855 None:intergenic
ACATAAATGTGACTGCAATA+TGG 0.284211 5_1:+6239145 Msa0713800:CDS
TTCTGGATTATATTGAACTA+TGG 0.296937 5_1:-6239253 None:intergenic
GTTTGAAAAGAGATCAATTC+AGG 0.318214 5_1:-6238031 None:intergenic
AATACATTCCCAGGAATATA+TGG 0.324845 5_1:+6242157 Msa0713800:three_prime_UTR
ATGAACAGCCCTACCTAGAT+AGG 0.334316 5_1:-6242423 None:intergenic
CTAGGAGAAAGCATTCAAAA+TGG 0.335895 5_1:-6241913 None:intergenic
CAGGTGAAGCCATTGAAGTT+TGG 0.341585 5_1:-6242501 None:intergenic
ATTTGAACGCATGCGCAAAA+TGG 0.355071 5_1:-6238863 None:intergenic
CATAAATGTGACTGCAATAT+GGG 0.356271 5_1:+6239146 Msa0713800:CDS
TGACAATCGAGTCGAATATA+AGG 0.364822 5_1:-6239863 None:intergenic
GAAAGGGTATAGGTGCGAAT+TGG 0.368255 5_1:-6237648 None:intergenic
TGAAGTTAATTTGGCTATTG+AGG 0.371174 5_1:+6238078 Msa0713800:five_prime_UTR
AAAGGGTATAGGTGCGAATT+GGG 0.374310 5_1:-6237647 None:intergenic
GTTCCCTTACCATATATTCC+TGG 0.375253 5_1:-6242166 None:intergenic
ATAATCTGAGCTGTGGTTGC+TGG 0.375315 5_1:+6238003 Msa0713800:five_prime_UTR
TCAAATACGGGGCTGGAAAA+TGG 0.375403 5_1:+6238809 Msa0713800:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 5_1:-6238757 None:intergenic
TTTCATAATGCGCCCTATCT+AGG 0.381804 5_1:+6242410 Msa0713800:three_prime_UTR
AGAAACATTGCCAAATCTTA+GGG 0.386270 5_1:-6242372 None:intergenic
AAGCCATTGAAGTTTGGTTC+GGG 0.398061 5_1:-6242495 None:intergenic
GAACTATGGCGGTCGAGGTT+GGG 0.406154 5_1:-6239239 None:intergenic
AGCAGCTGCAAAAGCAGTTG+CGG 0.409911 5_1:+6241686 Msa0713800:CDS
GACAGTAACTTTATGAGGTT+TGG 0.411444 5_1:-6241027 None:intergenic
CGCCATTGCTGCTTATATAG+AGG 0.411827 5_1:+6239917 Msa0713800:CDS
ATGCTCTTCCTTGTTACTCC+TGG 0.423977 5_1:+6241545 Msa0713800:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.425779 5_1:+6238749 Msa0713800:CDS
GAAGAGGCAGCTCTGAAAGC+TGG 0.428221 5_1:+6238781 Msa0713800:CDS
AGCTGCAAAAGCAGTTGCGG+AGG 0.430575 5_1:+6241689 Msa0713800:CDS
GAAGCCATTGAAGTTTGGTT+CGG 0.433007 5_1:-6242496 None:intergenic
TTGTTGACAGTAACTTTATG+AGG 0.436494 5_1:-6241032 None:intergenic
TATCTAGGTAGGGCTGTTCA+TGG 0.446835 5_1:+6242425 Msa0713800:three_prime_UTR
TTAAGTAATGTTTCTTGGTA+AGG 0.449768 5_1:-6241850 None:intergenic
TGGCTATTGAGGTCAATGTT+TGG 0.455593 5_1:+6238089 Msa0713800:five_prime_UTR
CCAGAAACTGAAAGAGGCTT+AGG 0.456807 5_1:-6239285 None:intergenic
AGGTAGGGCTGTTCATGGAT+TGG 0.462926 5_1:+6242430 Msa0713800:three_prime_UTR
CGACTCGATTGTCAAGTTGA+AGG 0.467379 5_1:+6239872 Msa0713800:CDS
TGAACTATGGCGGTCGAGGT+TGG 0.475508 5_1:-6239240 None:intergenic
AAAGCTGGAGTAGTCAAATA+CGG 0.485337 5_1:+6238796 Msa0713800:CDS
GTCAACAAAACTGAAGCATA+TGG 0.488294 5_1:+6241047 Msa0713800:CDS
TTCCCTTACCATATATTCCT+GGG 0.493638 5_1:-6242165 None:intergenic
TAAGCTATGAACAGGACAAA+TGG 0.495183 5_1:+6239118 Msa0713800:intron
TGACTGCAATATGGGGATCC+AGG 0.496295 5_1:+6239154 Msa0713800:CDS
TGAATGGATCGGAGAATGAA+AGG 0.497750 5_1:-6237665 None:intergenic
GGCCGTGGACTTCTTCCAAT+GGG 0.500319 5_1:+6238730 Msa0713800:exon
AAGCCTCTTTCAGTTTCTGG+TGG 0.504900 5_1:+6239288 Msa0713800:CDS
CTTCCTTGTTACTCCTGGAA+GGG 0.505904 5_1:+6241550 Msa0713800:CDS
GAAATCTGGGTCTGTAAGAA+TGG 0.507475 5_1:-6238836 None:intergenic
GCGGCAATGTCAGAACCCTT+TGG 0.508392 5_1:-6239897 None:intergenic
TCTTCCTTGTTACTCCTGGA+AGG 0.509910 5_1:+6241549 Msa0713800:CDS
TTATGAGGTTTGGTGGAGAC+CGG 0.510215 5_1:-6241017 None:intergenic
ATTCCCAGGAATATATGGTA+AGG 0.510987 5_1:+6242162 Msa0713800:three_prime_UTR
GACAGGTAAATCATAAGTAC+AGG 0.511866 5_1:+6241484 Msa0713800:intron
AGTAACTTTATGAGGTTTGG+TGG 0.512273 5_1:-6241024 None:intergenic
TAGGAGAAAGCATTCAAAAT+GGG 0.512658 5_1:-6241912 None:intergenic
AGTTAACCAAATACATTCCC+AGG 0.513886 5_1:+6242148 Msa0713800:three_prime_UTR
TGCTGTCTCAGCCTCAGCAA+TGG 0.514472 5_1:-6241721 None:intergenic
GGCTGAGACAGCAGCAAGGG+AGG 0.514772 5_1:+6241731 Msa0713800:CDS
ATAATGCGCCCTATCTAGGT+AGG 0.529910 5_1:+6242414 Msa0713800:three_prime_UTR
ATCGGAGAATGAAAGGGTAT+AGG 0.531059 5_1:-6237658 None:intergenic
AAATTAAAGAAGAAATTGAA+TGG 0.532572 5_1:-6237681 None:intergenic
TGGCGGTCGAGGTTGGGTGG+TGG 0.532625 5_1:-6239233 None:intergenic
GGAGTAGTCAAATACGGGGC+TGG 0.532847 5_1:+6238802 Msa0713800:CDS
CTTCCAAAGAACAAATATCA+AGG 0.532967 5_1:+6239319 Msa0713800:CDS
AAACCCGAACCAAACTTCAA+TGG 0.535228 5_1:+6242492 Msa0713800:three_prime_UTR
AAGCTGGAGTAGTCAAATAC+GGG 0.536563 5_1:+6238797 Msa0713800:CDS
AAAGAAGAAATTGAATGGAT+CGG 0.537721 5_1:-6237676 None:intergenic
GCAAAATGGTGCTGAAATCT+GGG 0.539501 5_1:-6238849 None:intergenic
ATATTGAACTATGGCGGTCG+AGG 0.543535 5_1:-6239244 None:intergenic
GAACAAAACTACAAAACAGT+TGG 0.546905 5_1:+6242467 Msa0713800:three_prime_UTR
CCTTGTTACTCCTGGAAGGG+AGG 0.547136 5_1:+6241553 Msa0713800:CDS
GGCAGAAGCTGCCATTGCTG+AGG 0.547830 5_1:+6241710 Msa0713800:CDS
AAAACAATACTGTCATAAGA+AGG 0.548234 5_1:+6238709 Msa0713800:five_prime_UTR
GAATGGATCGGAGAATGAAA+GGG 0.551647 5_1:-6237664 None:intergenic
AAATATCTTTCGTATTCCCA+CGG 0.558769 5_1:+6242253 Msa0713800:three_prime_UTR
TACCTCTATATAAGCAGCAA+TGG 0.560953 5_1:-6239919 None:intergenic
TGAGGCTGAGACAGCAGCAA+GGG 0.562956 5_1:+6241728 Msa0713800:CDS
CTATGGCGGTCGAGGTTGGG+TGG 0.567809 5_1:-6239236 None:intergenic
TAGGGCGCATTATGAAAAGA+TGG 0.567874 5_1:-6242404 None:intergenic
TTCTGCTTAGGAGCACCCAT+TGG 0.569658 5_1:-6238745 None:intergenic
TACCTCAATAGGATCAATAC+CGG 0.570066 5_1:+6240998 Msa0713800:intron
GAAATGGACTGCAGAAGAAG+AGG 0.574527 5_1:+6238765 Msa0713800:CDS
TGTCAAGTTGAAGGAGCCAA+AGG 0.577322 5_1:+6239881 Msa0713800:CDS
AATTGGGAGAATTTACGTGC+GGG 0.578991 5_1:-6237631 None:intergenic
AGGCCGTGGACTTCTTCCAA+TGG 0.581127 5_1:+6238729 Msa0713800:exon
GCGTTCAAATGTAGATCTCA+AGG 0.582023 5_1:+6238876 Msa0713800:CDS
CTCTATATAAGCAGCAATGG+CGG 0.582614 5_1:-6239916 None:intergenic
GTCAAGTTGAAGGAGCCAAA+GGG 0.586146 5_1:+6239882 Msa0713800:CDS
CTAGTACTAGAGAAAACCTC+GGG 0.586423 5_1:-6238676 None:intergenic
GAGGGGTGTGACAGCTCAAG+AGG 0.591616 5_1:+6241656 Msa0713800:CDS
CCTCCCTTCCAGGAGTAACA+AGG 0.596501 5_1:-6241553 None:intergenic
GTTCCACCAGAAACTGAAAG+AGG 0.604200 5_1:-6239291 None:intergenic
TTCCCAGGAATATATGGTAA+GGG 0.608185 5_1:+6242163 Msa0713800:three_prime_UTR
TAATGCGCCCTATCTAGGTA+GGG 0.611369 5_1:+6242415 Msa0713800:three_prime_UTR
CTGAGGCTGAGACAGCAGCA+AGG 0.616768 5_1:+6241727 Msa0713800:CDS
AACAGCTGAAGCTGAAGCAG+AGG 0.618779 5_1:+6241758 Msa0713800:CDS
GTTTGCAAAAGCAGCAACGA+AGG 0.621698 5_1:+6241791 Msa0713800:CDS
TGAACAGCCCTACCTAGATA+GGG 0.624485 5_1:-6242422 None:intergenic
GAAACATTGCCAAATCTTAG+GGG 0.627354 5_1:-6242371 None:intergenic
CTGAAGCATATGGTGGCAAG+CGG 0.627992 5_1:+6241057 Msa0713800:CDS
GAAATAATACTGCAATGCAA+AGG 0.631678 5_1:+6242301 Msa0713800:three_prime_UTR
AATATGGGGATCCAGGCAGA+AGG 0.633799 5_1:+6239161 Msa0713800:CDS
TGGATTATATTGAACTATGG+CGG 0.635820 5_1:-6239250 None:intergenic
GGCAAGCGGCAAATTAGTGA+AGG 0.638026 5_1:+6241071 Msa0713800:CDS
GCTATGAACAGGACAAATGG+AGG 0.639785 5_1:+6239121 Msa0713800:intron
ATAAATGTGACTGCAATATG+GGG 0.648699 5_1:+6239147 Msa0713800:CDS
CACCCATTGGAAGAAGTCCA+CGG 0.659202 5_1:-6238732 None:intergenic
TCTAGTACTAGAGAAAACCT+CGG 0.664893 5_1:-6238677 None:intergenic
CAGAAGAAGACTGCATCCCG+AGG 0.670596 5_1:+6238660 Msa0713800:five_prime_UTR
AACAAAACTGAAGCATATGG+TGG 0.677408 5_1:+6241050 Msa0713800:CDS
ATACTGTCATAAGAAGGCCG+TGG 0.682217 5_1:+6238715 Msa0713800:five_prime_UTR
AGCTGGAGTAGTCAAATACG+GGG 0.718064 5_1:+6238798 Msa0713800:CDS
GAATTGGGAGAATTTACGTG+CGG 0.721503 5_1:-6237632 None:intergenic
CAGACAAATAATCTGAGCTG+TGG 0.721649 5_1:+6237996 Msa0713800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTTTTTGAAA+TGG + chr5_1:6237850-6237869 Msa0713800:intron 10.0%
!! GTTAACTTTATAAAAAATTA+GGG - chr5_1:6241949-6241968 None:intergenic 10.0%
!! AGTTAACTTTATAAAAAATT+AGG - chr5_1:6241950-6241969 None:intergenic 10.0%
!! ATTAGCATTATAAAAAATTA+GGG - chr5_1:6242098-6242117 None:intergenic 10.0%
!! AATTAGCATTATAAAAAATT+AGG - chr5_1:6242099-6242118 None:intergenic 10.0%
!! AAATTAAAGAAGAAATTGAA+TGG - chr5_1:6237684-6237703 None:intergenic 15.0%
!!! AAAACAAAATTTGTTAATGT+TGG + chr5_1:6237803-6237822 Msa0713800:intron 15.0%
!!! TTAAGTCTTATAATTATTGA+AGG + chr5_1:6238590-6238609 Msa0713800:intron 15.0%
!! AGTAAAATTATTGTTATGTT+AGG + chr5_1:6238945-6238964 Msa0713800:intron 15.0%
!!! CATTAATTCATTTAAAACTT+TGG - chr5_1:6239520-6239539 None:intergenic 15.0%
!!! TAAAAGTATTTTAAACTCTT+TGG + chr5_1:6240179-6240198 Msa0713800:intron 15.0%
!! ATAAACAACATATAAATCAA+TGG - chr5_1:6240669-6240688 None:intergenic 15.0%
!! AGTAATATAGGTTTATTAAA+AGG - chr5_1:6241393-6241412 None:intergenic 15.0%
!! TATTTATCTTACAGTAATAT+AGG - chr5_1:6241405-6241424 None:intergenic 15.0%
!! TATTACTGTAAGATAAATAT+TGG + chr5_1:6241406-6241425 Msa0713800:intron 15.0%
!! AAGTAATTTAATATGATACT+TGG + chr5_1:6241431-6241450 Msa0713800:intron 15.0%
!! TATGAATTGTATTGTTTCAA+TGG - chr5_1:6237925-6237944 None:intergenic 20.0%
!! TTGTGAAAAATCATCAAATT+AGG - chr5_1:6237958-6237977 None:intergenic 20.0%
!!! ATAACAATTTTTGGTGTATT+GGG - chr5_1:6238223-6238242 None:intergenic 20.0%
!!! AATAACAATTTTTGGTGTAT+TGG - chr5_1:6238224-6238243 None:intergenic 20.0%
!!! GTAAAAAGTTATAACTTTTG+GGG - chr5_1:6238274-6238293 None:intergenic 20.0%
!!! CGTAAAAAGTTATAACTTTT+GGG - chr5_1:6238275-6238294 None:intergenic 20.0%
!! TCCAATTATGAATCTAAATA+GGG - chr5_1:6238298-6238317 None:intergenic 20.0%
!! ATCCAATTATGAATCTAAAT+AGG - chr5_1:6238299-6238318 None:intergenic 20.0%
!! TGGTATATGATAGAATATTA+TGG + chr5_1:6238407-6238426 Msa0713800:intron 20.0%
!! GTTGTTTAGATTCAAAATTA+TGG + chr5_1:6238484-6238503 Msa0713800:intron 20.0%
!! TCATATTAAACTATATACGT+AGG + chr5_1:6239068-6239087 Msa0713800:intron 20.0%
!! TTACACTTTATAGAACTAAA+TGG + chr5_1:6239368-6239387 Msa0713800:intron 20.0%
!!! AAACATTTTGTAGTTGTAAT+TGG - chr5_1:6239705-6239724 None:intergenic 20.0%
!!! TCTTTTTAATAATGACAGAT+TGG + chr5_1:6239836-6239855 Msa0713800:intron 20.0%
!! GATTATATATACCATTAATG+AGG - chr5_1:6239960-6239979 None:intergenic 20.0%
!! GAAAAACTTAGATATTAATG+AGG + chr5_1:6240531-6240550 Msa0713800:intron 20.0%
!!! AAAAAACTGCTCTAATATTT+TGG - chr5_1:6240753-6240772 None:intergenic 20.0%
!! ATATCCAATAAATTATTCAG+TGG - chr5_1:6241195-6241214 None:intergenic 20.0%
!! TTATTGGATATTGAATGTTA+TGG + chr5_1:6241204-6241223 Msa0713800:intron 20.0%
!! ATTGGTAAAGAGAAATTAAT+TGG + chr5_1:6241261-6241280 Msa0713800:intron 20.0%
!! TGAATACAAAAAATCTGTTA+TGG + chr5_1:6241299-6241318 Msa0713800:intron 20.0%
!!! TTTTAACACAATTACAAACA+TGG - chr5_1:6242199-6242218 None:intergenic 20.0%
! AAAGAAGAAATTGAATGGAT+CGG - chr5_1:6237679-6237698 None:intergenic 25.0%
!!! ATTTCTTCTTTAATTTTCCC+AGG + chr5_1:6237688-6237707 Msa0713800:five_prime_UTR 25.0%
!!! ACAAAATTTGTTAATGTTGG+TGG + chr5_1:6237806-6237825 Msa0713800:intron 25.0%
!!! GAATCATTTTTTTTGTAGCA+AGG + chr5_1:6237881-6237900 Msa0713800:intron 25.0%
!! ATTGATCTCTTTTCAAACAT+TGG + chr5_1:6238036-6238055 Msa0713800:five_prime_UTR 25.0%
! ATGTGCAATTGAAGTTAATT+TGG + chr5_1:6238069-6238088 Msa0713800:five_prime_UTR 25.0%
!! GGGACAAAAATAACAATTTT+TGG - chr5_1:6238232-6238251 None:intergenic 25.0%
!!! GTTATTTTTGTCCCAAAAAA+TGG + chr5_1:6238238-6238257 Msa0713800:intron 25.0%
!! GCGTAAAAAGTTATAACTTT+TGG - chr5_1:6238276-6238295 None:intergenic 25.0%
!! AGATTTAGAGTTTAATGAGT+TGG + chr5_1:6238373-6238392 Msa0713800:intron 25.0%
!! ATGAGTTGGATAGAAATATA+TGG + chr5_1:6238387-6238406 Msa0713800:intron 25.0%
! AAAACAATACTGTCATAAGA+AGG + chr5_1:6238709-6238728 Msa0713800:five_prime_UTR 25.0%
!!! TTTGTTTTAAATGTTCTAGC+AGG + chr5_1:6238904-6238923 Msa0713800:intron 25.0%
! TAACTGTTTACTTTATCACA+AGG + chr5_1:6239004-6239023 Msa0713800:intron 25.0%
!!! TGGTGGTTATTTTCATTTTT+CGG - chr5_1:6239219-6239238 None:intergenic 25.0%
! TTCTGGATTATATTGAACTA+TGG - chr5_1:6239256-6239275 None:intergenic 25.0%
! TAACCTTGATATTTGTTCTT+TGG - chr5_1:6239325-6239344 None:intergenic 25.0%
! TATAATAGTTATCAGCTCTA+AGG + chr5_1:6239469-6239488 Msa0713800:intron 25.0%
!! AAACAAGTTGCAAACAATTT+TGG + chr5_1:6239544-6239563 Msa0713800:intron 25.0%
! TATGAAGGAATTGGAATAAA+TGG - chr5_1:6240082-6240101 None:intergenic 25.0%
!! GTTTCTCATATAGTTTTTCT+AGG - chr5_1:6240505-6240524 None:intergenic 25.0%
! TATTAATGAGGATCCAAATA+AGG + chr5_1:6240543-6240562 Msa0713800:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG - chr5_1:6240559-6240578 None:intergenic 25.0%
! AGTTATTAGCAGAAAATGAT+TGG + chr5_1:6241243-6241262 Msa0713800:intron 25.0%
!!! CATCAATTTGAGATTTTGAA+AGG - chr5_1:6241620-6241639 None:intergenic 25.0%
!!! ATGTTGAGCTTTTAAAAATG+AGG + chr5_1:6241637-6241656 Msa0713800:CDS 25.0%
!!! TGTTGAGCTTTTAAAAATGA+GGG + chr5_1:6241638-6241657 Msa0713800:CDS 25.0%
! AATGCAGAAGACTTAATATT+TGG + chr5_1:6241820-6241839 Msa0713800:CDS 25.0%
! TTAAGTAATGTTTCTTGGTA+AGG - chr5_1:6241853-6241872 None:intergenic 25.0%
! ATGCATTAAGTAATGTTTCT+TGG - chr5_1:6241858-6241877 None:intergenic 25.0%
AAAATGATGAATACTGACCT+GGG - chr5_1:6237708-6237727 None:intergenic 30.0%
AAAAATGATGAATACTGACC+TGG - chr5_1:6237709-6237728 None:intergenic 30.0%
GTTTGAAAAGAGATCAATTC+AGG - chr5_1:6238034-6238053 None:intergenic 30.0%
! TGAAGTTAATTTGGCTATTG+AGG + chr5_1:6238078-6238097 Msa0713800:five_prime_UTR 30.0%
! TCCCAAAAAATGGTGATTTT+TGG + chr5_1:6238248-6238267 Msa0713800:intron 30.0%
!!! GCCAAAAATCACCATTTTTT+GGG - chr5_1:6238252-6238271 None:intergenic 30.0%
GCCCTATTTAGATTCATAAT+TGG + chr5_1:6238294-6238313 Msa0713800:intron 30.0%
! GTTTCTCTTACAGTTTTTCT+AGG - chr5_1:6238344-6238363 None:intergenic 30.0%
! TTCCTATACTGTTGCAATTT+TGG - chr5_1:6238552-6238571 None:intergenic 30.0%
AAATTGCAACAGTATAGGAA+CGG + chr5_1:6238552-6238571 Msa0713800:intron 30.0%
! CAATAAAGTCAGACATTTTG+TGG + chr5_1:6238628-6238647 Msa0713800:five_prime_UTR 30.0%
TAAATGTTCTAGCAGGTTAT+AGG + chr5_1:6238911-6238930 Msa0713800:intron 30.0%
ACATAAATGTGACTGCAATA+TGG + chr5_1:6239145-6239164 Msa0713800:CDS 30.0%
CATAAATGTGACTGCAATAT+GGG + chr5_1:6239146-6239165 Msa0713800:CDS 30.0%
ATAAATGTGACTGCAATATG+GGG + chr5_1:6239147-6239166 Msa0713800:CDS 30.0%
!! TGGTTATTTTCATTTTTCGG+GGG - chr5_1:6239216-6239235 None:intergenic 30.0%
!! GTGGTTATTTTCATTTTTCG+GGG - chr5_1:6239217-6239236 None:intergenic 30.0%
!! GGTGGTTATTTTCATTTTTC+GGG - chr5_1:6239218-6239237 None:intergenic 30.0%
TGGATTATATTGAACTATGG+CGG - chr5_1:6239253-6239272 None:intergenic 30.0%
CTTCCAAAGAACAAATATCA+AGG + chr5_1:6239319-6239338 Msa0713800:CDS 30.0%
! CATTTAAAACTTTGGTATGC+TGG - chr5_1:6239512-6239531 None:intergenic 30.0%
TCAGAAAACAATATACCTTG+TGG - chr5_1:6239584-6239603 None:intergenic 30.0%
! TGATGATTCTTTTCTAAGCA+TGG + chr5_1:6239628-6239647 Msa0713800:intron 30.0%
AAATTCACCACAATCTTAAG+GGG - chr5_1:6239769-6239788 None:intergenic 30.0%
CAAATTCACCACAATCTTAA+GGG - chr5_1:6239770-6239789 None:intergenic 30.0%
!!! TGGCAATGTTTTTTCAATGA+TGG + chr5_1:6239804-6239823 Msa0713800:intron 30.0%
TCAAACTGTTATGAAGGAAT+TGG - chr5_1:6240091-6240110 None:intergenic 30.0%
TATAGGTCAAACTGTTATGA+AGG - chr5_1:6240097-6240116 None:intergenic 30.0%
TAAAACAAGCATAGCAAAGA+TGG + chr5_1:6240272-6240291 Msa0713800:intron 30.0%
AAAACAAGCATAGCAAAGAT+GGG + chr5_1:6240273-6240292 Msa0713800:intron 30.0%
ACATATAAATCAATGGACCT+AGG - chr5_1:6240662-6240681 None:intergenic 30.0%
GTTAGAACTAGTTGAAATTG+TGG - chr5_1:6240699-6240718 None:intergenic 30.0%
!! ACTAGTTCTAACATGTAACT+CGG + chr5_1:6240707-6240726 Msa0713800:intron 30.0%
!!! ATATTTTGGTACCAGAAGAA+TGG - chr5_1:6240739-6240758 None:intergenic 30.0%
!!! AGAGCAGTTTTTTCATTTGA+TGG + chr5_1:6240760-6240779 Msa0713800:intron 30.0%
CTGAAATTGTTTACCTCAAT+AGG + chr5_1:6240987-6241006 Msa0713800:intron 30.0%
TTGTTGACAGTAACTTTATG+AGG - chr5_1:6241035-6241054 None:intergenic 30.0%
CTGTCCACTGAATAATTTAT+TGG + chr5_1:6241188-6241207 Msa0713800:intron 30.0%
CTTATGATTTACCTGTCATT+AGG - chr5_1:6241481-6241500 None:intergenic 30.0%
!! TTGAGATTTTGAAAGGATGT+TGG - chr5_1:6241613-6241632 None:intergenic 30.0%
!! GTTGAGCTTTTAAAAATGAG+GGG + chr5_1:6241639-6241658 Msa0713800:CDS 30.0%
!! TAGGAGAAAGCATTCAAAAT+GGG - chr5_1:6241915-6241934 None:intergenic 30.0%
TATATTCCTGGGAATGTATT+TGG - chr5_1:6242157-6242176 None:intergenic 30.0%
AATACATTCCCAGGAATATA+TGG + chr5_1:6242157-6242176 Msa0713800:three_prime_UTR 30.0%
AAATATCTTTCGTATTCCCA+CGG + chr5_1:6242253-6242272 Msa0713800:three_prime_UTR 30.0%
GAAATAATACTGCAATGCAA+AGG + chr5_1:6242301-6242320 Msa0713800:three_prime_UTR 30.0%
AACAAAAATCCCCTAAGATT+TGG + chr5_1:6242362-6242381 Msa0713800:three_prime_UTR 30.0%
AGAAACATTGCCAAATCTTA+GGG - chr5_1:6242375-6242394 None:intergenic 30.0%
TAGAAACATTGCCAAATCTT+AGG - chr5_1:6242376-6242395 None:intergenic 30.0%
GAACAAAACTACAAAACAGT+TGG + chr5_1:6242467-6242486 Msa0713800:three_prime_UTR 30.0%
GATTATTTGTCTGCAGGAAA+AGG - chr5_1:6237989-6238008 None:intergenic 35.0%
!!! GGCCAAAAATCACCATTTTT+TGG - chr5_1:6238253-6238272 None:intergenic 35.0%
GAATCTAAACAACAACAACC+AGG - chr5_1:6238477-6238496 None:intergenic 35.0%
GACCAAAATTGCAACAGTAT+AGG + chr5_1:6238547-6238566 Msa0713800:intron 35.0%
AATTGCAACAGTATAGGAAC+GGG + chr5_1:6238553-6238572 Msa0713800:intron 35.0%
TATTGAAGGATGACGTTTGT+AGG + chr5_1:6238604-6238623 Msa0713800:intron 35.0%
TCTAGTACTAGAGAAAACCT+CGG - chr5_1:6238680-6238699 None:intergenic 35.0%
AAAGCTGGAGTAGTCAAATA+CGG + chr5_1:6238796-6238815 Msa0713800:CDS 35.0%
! ATGTGCTTTAAGCTATGAAC+AGG + chr5_1:6239110-6239129 Msa0713800:intron 35.0%
TAAGCTATGAACAGGACAAA+TGG + chr5_1:6239118-6239137 Msa0713800:intron 35.0%
!!! TTATTTTCATTTTTCGGGGG+TGG - chr5_1:6239213-6239232 None:intergenic 35.0%
ACTAAATGGTCTGTGATTCT+TGG + chr5_1:6239382-6239401 Msa0713800:intron 35.0%
! GCTATAATTTGTGTACCACA+AGG + chr5_1:6239566-6239585 Msa0713800:intron 35.0%
ACAATATCCCCTTAAGATTG+TGG + chr5_1:6239759-6239778 Msa0713800:intron 35.0%
GCAAATTCACCACAATCTTA+AGG - chr5_1:6239771-6239790 None:intergenic 35.0%
AATTTGCAACGTCAATCATG+TGG + chr5_1:6239784-6239803 Msa0713800:intron 35.0%
TGACAATCGAGTCGAATATA+AGG - chr5_1:6239866-6239885 None:intergenic 35.0%
TACCTCTATATAAGCAGCAA+TGG - chr5_1:6239922-6239941 None:intergenic 35.0%
TACCTTGATTGCCTCATTAA+TGG + chr5_1:6239946-6239965 Msa0713800:intron 35.0%
TACCATTAATGAGGCAATCA+AGG - chr5_1:6239951-6239970 None:intergenic 35.0%
CACTGAGTGAGGAAAAAAAT+TGG - chr5_1:6240006-6240025 None:intergenic 35.0%
! TCATTTGAGATAGGATAGTG+TGG - chr5_1:6240055-6240074 None:intergenic 35.0%
! AATGGTCTGTCATTTGAGAT+AGG - chr5_1:6240064-6240083 None:intergenic 35.0%
GGGAGACTGAATAAAACTAT+AGG - chr5_1:6240114-6240133 None:intergenic 35.0%
! AGTCTCCCTCTAGAAAATAT+CGG + chr5_1:6240126-6240145 Msa0713800:intron 35.0%
AAGAACCAACACGAGAATAA+CGG + chr5_1:6240218-6240237 Msa0713800:intron 35.0%
AAACAAGCATAGCAAAGATG+GGG + chr5_1:6240274-6240293 Msa0713800:intron 35.0%
AACATTAGAGAGAGAGAGTT+GGG + chr5_1:6240348-6240367 Msa0713800:intron 35.0%
ACCTACAGTAGAAATGATAG+TGG + chr5_1:6240376-6240395 Msa0713800:intron 35.0%
TCCACTATCATTTCTACTGT+AGG - chr5_1:6240380-6240399 None:intergenic 35.0%
!! GTAGAAATGATAGTGGAAAC+AGG + chr5_1:6240383-6240402 Msa0713800:intron 35.0%
TCTCCTTATACAGAATCTAC+GGG - chr5_1:6240437-6240456 None:intergenic 35.0%
CTCTCCTTATACAGAATCTA+CGG - chr5_1:6240438-6240457 None:intergenic 35.0%
TATAAGGAGAGTAGATCAGA+TGG + chr5_1:6240447-6240466 Msa0713800:intron 35.0%
!! CTAGTTCTAACATGTAACTC+GGG + chr5_1:6240708-6240727 Msa0713800:intron 35.0%
!! TAGTTCTAACATGTAACTCG+GGG + chr5_1:6240709-6240728 Msa0713800:intron 35.0%
TACCTCAATAGGATCAATAC+CGG + chr5_1:6240998-6241017 Msa0713800:intron 35.0%
AGTAACTTTATGAGGTTTGG+TGG - chr5_1:6241027-6241046 None:intergenic 35.0%
GACAGTAACTTTATGAGGTT+TGG - chr5_1:6241030-6241049 None:intergenic 35.0%
GTCAACAAAACTGAAGCATA+TGG + chr5_1:6241047-6241066 Msa0713800:CDS 35.0%
AACAAAACTGAAGCATATGG+TGG + chr5_1:6241050-6241069 Msa0713800:CDS 35.0%
TACTCTTCGTTACTGAAACT+TGG + chr5_1:6241100-6241119 Msa0713800:intron 35.0%
GTTACTGAAACTTGGTTTCT+TGG + chr5_1:6241108-6241127 Msa0713800:intron 35.0%
AAACTTGGTTTCTTGGAACT+TGG + chr5_1:6241115-6241134 Msa0713800:intron 35.0%
!! CAGGAAAAGATACTGCTTTT+TGG - chr5_1:6241144-6241163 None:intergenic 35.0%
! TCTTTTCCTGCAAACTTTTC+TGG + chr5_1:6241154-6241173 Msa0713800:intron 35.0%
TGTTATGGTTACACTGTTAC+TGG + chr5_1:6241219-6241238 Msa0713800:intron 35.0%
TAGTGGGAGTGAAATTCTAT+TGG + chr5_1:6241354-6241373 Msa0713800:intron 35.0%
GACAGGTAAATCATAAGTAC+AGG + chr5_1:6241484-6241503 Msa0713800:intron 35.0%
!! TCTGCTTTTGGAGAATCTTT+TGG - chr5_1:6241579-6241598 None:intergenic 35.0%
!! AGCATTCAAAATGGGCTAAA+AGG - chr5_1:6241907-6241926 None:intergenic 35.0%
!! CTAGGAGAAAGCATTCAAAA+TGG - chr5_1:6241916-6241935 None:intergenic 35.0%
! TTTTGAATGCTTTCTCCTAG+TGG + chr5_1:6241916-6241935 Msa0713800:three_prime_UTR 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_1:6241934-6241953 None:intergenic 35.0%
!! TAGGAGAAAGCATTCAAGAT+GGG - chr5_1:6242064-6242083 None:intergenic 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_1:6241934-6241953 None:intergenic 35.0%
AGTTAACCAAATACATTCCC+AGG + chr5_1:6242148-6242167 Msa0713800:three_prime_UTR 35.0%
ATTCCCAGGAATATATGGTA+AGG + chr5_1:6242162-6242181 Msa0713800:three_prime_UTR 35.0%
TTCCCAGGAATATATGGTAA+GGG + chr5_1:6242163-6242182 Msa0713800:three_prime_UTR 35.0%
TTCCCTTACCATATATTCCT+GGG - chr5_1:6242168-6242187 None:intergenic 35.0%
CCATAGAGAATAAAAACCGT+GGG - chr5_1:6242272-6242291 None:intergenic 35.0%
TCCATAGAGAATAAAAACCG+TGG - chr5_1:6242273-6242292 None:intergenic 35.0%
! ACGGTTTTTATTCTCTATGG+AGG + chr5_1:6242272-6242291 Msa0713800:three_prime_UTR 35.0%
! CGGTTTTTATTCTCTATGGA+GGG + chr5_1:6242273-6242292 Msa0713800:three_prime_UTR 35.0%
! GGTTTTTATTCTCTATGGAG+GGG + chr5_1:6242274-6242293 Msa0713800:three_prime_UTR 35.0%
! GTTTTTATTCTCTATGGAGG+GGG + chr5_1:6242275-6242294 Msa0713800:three_prime_UTR 35.0%
GAAACATTGCCAAATCTTAG+GGG - chr5_1:6242374-6242393 None:intergenic 35.0%
!! CTGTTCATGGATTGGTTTAT+AGG + chr5_1:6242438-6242457 Msa0713800:three_prime_UTR 35.0%
!! CTTTCGTCTTTTGCTTTTCG+TGG - chr5_1:6237542-6237561 None:intergenic 40.0%
AATTGGGAGAATTTACGTGC+GGG - chr5_1:6237634-6237653 None:intergenic 40.0%
GAATTGGGAGAATTTACGTG+CGG - chr5_1:6237635-6237654 None:intergenic 40.0%
! AAAGGGTATAGGTGCGAATT+GGG - chr5_1:6237650-6237669 None:intergenic 40.0%
! ATCGGAGAATGAAAGGGTAT+AGG - chr5_1:6237661-6237680 None:intergenic 40.0%
GAATGGATCGGAGAATGAAA+GGG - chr5_1:6237667-6237686 None:intergenic 40.0%
TGAATGGATCGGAGAATGAA+AGG - chr5_1:6237668-6237687 None:intergenic 40.0%
AGCTCAGATTATTTGTCTGC+AGG - chr5_1:6237995-6238014 None:intergenic 40.0%
CAGACAAATAATCTGAGCTG+TGG + chr5_1:6237996-6238015 Msa0713800:intron 40.0%
TGGCTATTGAGGTCAATGTT+TGG + chr5_1:6238089-6238108 Msa0713800:five_prime_UTR 40.0%
TGCAACAATGTGCGAAATTG+AGG - chr5_1:6238191-6238210 None:intergenic 40.0%
ATTGCAACAGTATAGGAACG+GGG + chr5_1:6238554-6238573 Msa0713800:intron 40.0%
CTAGTACTAGAGAAAACCTC+GGG - chr5_1:6238679-6238698 None:intergenic 40.0%
AAGCTGGAGTAGTCAAATAC+GGG + chr5_1:6238797-6238816 Msa0713800:CDS 40.0%
GAAATCTGGGTCTGTAAGAA+TGG - chr5_1:6238839-6238858 None:intergenic 40.0%
! GCAAAATGGTGCTGAAATCT+GGG - chr5_1:6238852-6238871 None:intergenic 40.0%
ATTTGAACGCATGCGCAAAA+TGG - chr5_1:6238866-6238885 None:intergenic 40.0%
GCGTTCAAATGTAGATCTCA+AGG + chr5_1:6238876-6238895 Msa0713800:CDS 40.0%
AATGGTCTGTGATTCTTGGT+TGG + chr5_1:6239386-6239405 Msa0713800:intron 40.0%
ACACGCACAAACTCACATAT+AGG + chr5_1:6239677-6239696 Msa0713800:intron 40.0%
CTCTATATAAGCAGCAATGG+CGG - chr5_1:6239919-6239938 None:intergenic 40.0%
! GCTGACCGATATTTTCTAGA+GGG - chr5_1:6240134-6240153 None:intergenic 40.0%
TTGTAAACTTGATCGCAAGC+AGG - chr5_1:6240156-6240175 None:intergenic 40.0%
!! TCGTGTTGGTTCTTATACAG+AGG - chr5_1:6240212-6240231 None:intergenic 40.0%
ACATTCCGTTATTCTCGTGT+TGG - chr5_1:6240226-6240245 None:intergenic 40.0%
! GAGAATAACGGAATGTTGAG+CGG + chr5_1:6240230-6240249 Msa0713800:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr5_1:6240313-6240332 Msa0713800:intron 40.0%
CAACATTAGAGAGAGAGAGT+TGG + chr5_1:6240347-6240366 Msa0713800:intron 40.0%
ACATTAGAGAGAGAGAGTTG+GGG + chr5_1:6240349-6240368 Msa0713800:intron 40.0%
! TAAGGCTTGATGGTTGTTGT+TGG + chr5_1:6240624-6240643 Msa0713800:intron 40.0%
GTTGGAAATGTTTCTCTCCT+AGG + chr5_1:6240642-6240661 Msa0713800:intron 40.0%
TGCCTTCCTGTGTTTAAGAA+AGG + chr5_1:6240848-6240867 Msa0713800:intron 40.0%
AGCCTTTCTTAAACACAGGA+AGG - chr5_1:6240853-6240872 None:intergenic 40.0%
GCTAAGCCTTTCTTAAACAC+AGG - chr5_1:6240857-6240876 None:intergenic 40.0%
TAGTCGAACTACGCACATAT+GGG + chr5_1:6241322-6241341 Msa0713800:intron 40.0%
ATATGGGCATTCTCTGTAGT+GGG + chr5_1:6241338-6241357 Msa0713800:intron 40.0%
GTCATTAGGTATGTCAGACT+AGG - chr5_1:6241467-6241486 None:intergenic 40.0%
AGTCTGACATACCTAATGAC+AGG + chr5_1:6241467-6241486 Msa0713800:intron 40.0%
!!! GGAAGAGCATCTTCTTTTCT+CGG - chr5_1:6241535-6241554 None:intergenic 40.0%
! GCATCAGTTTTCTCTGCTTT+TGG - chr5_1:6241591-6241610 None:intergenic 40.0%
!! AGCATTCAAGATGGGCTAAA+AGG - chr5_1:6242056-6242075 None:intergenic 40.0%
!! CTAGGAGAAAGCATTCAAGA+TGG - chr5_1:6242065-6242084 None:intergenic 40.0%
TCTTGAATGCTTTCTCCTAG+TGG + chr5_1:6242065-6242084 Msa0713800:intron 40.0%
GTTCCCTTACCATATATTCC+TGG - chr5_1:6242169-6242188 None:intergenic 40.0%
! CCCACGGTTTTTATTCTCTA+TGG + chr5_1:6242269-6242288 Msa0713800:three_prime_UTR 40.0%
TAGGGCGCATTATGAAAAGA+TGG - chr5_1:6242407-6242426 None:intergenic 40.0%
TTTCATAATGCGCCCTATCT+AGG + chr5_1:6242410-6242429 Msa0713800:three_prime_UTR 40.0%
AAACCCGAACCAAACTTCAA+TGG + chr5_1:6242492-6242511 Msa0713800:three_prime_UTR 40.0%
! AAGCCATTGAAGTTTGGTTC+GGG - chr5_1:6242498-6242517 None:intergenic 40.0%
GAAGCCATTGAAGTTTGGTT+CGG - chr5_1:6242499-6242518 None:intergenic 40.0%
!! CGTCTTTTGCTTTTCGTGGA+AGG - chr5_1:6237538-6237557 None:intergenic 45.0%
! GAAAGGGTATAGGTGCGAAT+TGG - chr5_1:6237651-6237670 None:intergenic 45.0%
ATAATCTGAGCTGTGGTTGC+TGG + chr5_1:6238003-6238022 Msa0713800:five_prime_UTR 45.0%
!! ACTAAGTGGGATTGGCTTCA+TGG - chr5_1:6238445-6238464 None:intergenic 45.0%
ATGAAGCCAATCCCACTTAG+TGG + chr5_1:6238444-6238463 Msa0713800:intron 45.0%
TGAAGCCAATCCCACTTAGT+GGG + chr5_1:6238445-6238464 Msa0713800:intron 45.0%
CTTATCCCACTAAGTGGGAT+TGG - chr5_1:6238453-6238472 None:intergenic 45.0%
CAGGACTTATCCCACTAAGT+GGG - chr5_1:6238458-6238477 None:intergenic 45.0%
TTGCAACAGTATAGGAACGG+GGG + chr5_1:6238555-6238574 Msa0713800:intron 45.0%
ATACTGTCATAAGAAGGCCG+TGG + chr5_1:6238715-6238734 Msa0713800:five_prime_UTR 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr5_1:6238760-6238779 None:intergenic 45.0%
!! GAAATGGACTGCAGAAGAAG+AGG + chr5_1:6238765-6238784 Msa0713800:CDS 45.0%
AGCTGGAGTAGTCAAATACG+GGG + chr5_1:6238798-6238817 Msa0713800:CDS 45.0%
TCAAATACGGGGCTGGAAAA+TGG + chr5_1:6238809-6238828 Msa0713800:CDS 45.0%
! CGCAAAATGGTGCTGAAATC+TGG - chr5_1:6238853-6238872 None:intergenic 45.0%
! GGTTTGAGATGCTACTGCTA+CGG + chr5_1:6238966-6238985 Msa0713800:intron 45.0%
GCTATGAACAGGACAAATGG+AGG + chr5_1:6239121-6239140 Msa0713800:intron 45.0%
!!! TTTCATTTTTCGGGGGTGGT+AGG - chr5_1:6239209-6239228 None:intergenic 45.0%
ATATTGAACTATGGCGGTCG+AGG - chr5_1:6239247-6239266 None:intergenic 45.0%
CCAGAAACTGAAAGAGGCTT+AGG - chr5_1:6239288-6239307 None:intergenic 45.0%
CCTAAGCCTCTTTCAGTTTC+TGG + chr5_1:6239285-6239304 Msa0713800:CDS 45.0%
! AAGCCTCTTTCAGTTTCTGG+TGG + chr5_1:6239288-6239307 Msa0713800:CDS 45.0%
GTTCCACCAGAAACTGAAAG+AGG - chr5_1:6239294-6239313 None:intergenic 45.0%
!! CGACTCGATTGTCAAGTTGA+AGG + chr5_1:6239872-6239891 Msa0713800:CDS 45.0%
!! TGTCAAGTTGAAGGAGCCAA+AGG + chr5_1:6239881-6239900 Msa0713800:CDS 45.0%
!! GTCAAGTTGAAGGAGCCAAA+GGG + chr5_1:6239882-6239901 Msa0713800:CDS 45.0%
! CGCCATTGCTGCTTATATAG+AGG + chr5_1:6239917-6239936 Msa0713800:CDS 45.0%
GTAACTGATCTCACTGAGTG+AGG - chr5_1:6240017-6240036 None:intergenic 45.0%
! GGCTGACCGATATTTTCTAG+AGG - chr5_1:6240135-6240154 None:intergenic 45.0%
GGACCCGTAGATTCTGTATA+AGG + chr5_1:6240431-6240450 Msa0713800:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_1:6240450-6240469 Msa0713800:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr5_1:6240469-6240488 Msa0713800:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5_1:6240612-6240631 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5_1:6240613-6240632 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr5_1:6240614-6240633 None:intergenic 45.0%
CTTAGTGGGATAAGGCTTGA+TGG + chr5_1:6240614-6240633 Msa0713800:intron 45.0%
! GAGCTTAGGGGAACTTGTTT+AGG - chr5_1:6240798-6240817 None:intergenic 45.0%
! GTTAAGAGCTTGTTCTTGCC+AGG - chr5_1:6240824-6240843 None:intergenic 45.0%
!! GACCGGTATTGATCCTATTG+AGG - chr5_1:6241003-6241022 None:intergenic 45.0%
!! TTATGAGGTTTGGTGGAGAC+CGG - chr5_1:6241020-6241039 None:intergenic 45.0%
!! CTGCAAACTTTTCTGGCGAA+GGG + chr5_1:6241161-6241180 Msa0713800:intron 45.0%
GTAGTCGAACTACGCACATA+TGG + chr5_1:6241321-6241340 Msa0713800:intron 45.0%
CATATGGGCATTCTCTGTAG+TGG + chr5_1:6241337-6241356 Msa0713800:intron 45.0%
ATGCTCTTCCTTGTTACTCC+TGG + chr5_1:6241545-6241564 Msa0713800:CDS 45.0%
TCTTCCTTGTTACTCCTGGA+AGG + chr5_1:6241549-6241568 Msa0713800:CDS 45.0%
CTTCCTTGTTACTCCTGGAA+GGG + chr5_1:6241550-6241569 Msa0713800:CDS 45.0%
GTTTGCAAAAGCAGCAACGA+AGG + chr5_1:6241791-6241810 Msa0713800:CDS 45.0%
TTTATTCTCTATGGAGGGGG+TGG + chr5_1:6242278-6242297 Msa0713800:three_prime_UTR 45.0%
TTATTCTCTATGGAGGGGGT+GGG + chr5_1:6242279-6242298 Msa0713800:three_prime_UTR 45.0%
ATAATGCGCCCTATCTAGGT+AGG + chr5_1:6242414-6242433 Msa0713800:three_prime_UTR 45.0%
TAATGCGCCCTATCTAGGTA+GGG + chr5_1:6242415-6242434 Msa0713800:three_prime_UTR 45.0%
TGAACAGCCCTACCTAGATA+GGG - chr5_1:6242425-6242444 None:intergenic 45.0%
ATGAACAGCCCTACCTAGAT+AGG - chr5_1:6242426-6242445 None:intergenic 45.0%
TATCTAGGTAGGGCTGTTCA+TGG + chr5_1:6242425-6242444 Msa0713800:three_prime_UTR 45.0%
CAGGTGAAGCCATTGAAGTT+TGG - chr5_1:6242504-6242523 None:intergenic 45.0%
CCAGGACTTATCCCACTAAG+TGG - chr5_1:6238459-6238478 None:intergenic 50.0%
CCACTTAGTGGGATAAGTCC+TGG + chr5_1:6238456-6238475 Msa0713800:intron 50.0%
CACCCATTGGAAGAAGTCCA+CGG - chr5_1:6238735-6238754 None:intergenic 50.0%
!! TTCTGCTTAGGAGCACCCAT+TGG - chr5_1:6238748-6238767 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr5_1:6238749-6238768 Msa0713800:CDS 50.0%
TGACTGCAATATGGGGATCC+AGG + chr5_1:6239154-6239173 Msa0713800:CDS 50.0%
AATATGGGGATCCAGGCAGA+AGG + chr5_1:6239161-6239180 Msa0713800:CDS 50.0%
! TGCAAGTTTTGCCTTCTGCC+TGG - chr5_1:6239175-6239194 None:intergenic 50.0%
CAAAGATGGGGATGTTGCGT+TGG + chr5_1:6240286-6240305 Msa0713800:intron 50.0%
!! ATGATAGTGGAAACAGGCGC+AGG + chr5_1:6240389-6240408 Msa0713800:intron 50.0%
GGTGGTTTGAGCATGTAGAG+AGG + chr5_1:6240410-6240429 Msa0713800:intron 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr5_1:6240475-6240494 Msa0713800:intron 50.0%
ACTAAGTGGGGTCTGCTACA+TGG - chr5_1:6240600-6240619 None:intergenic 50.0%
ATGTAGCAGACCCCACTTAG+TGG + chr5_1:6240599-6240618 Msa0713800:intron 50.0%
TGTAGCAGACCCCACTTAGT+GGG + chr5_1:6240600-6240619 Msa0713800:intron 50.0%
AGACCCCACTTAGTGGGATA+AGG + chr5_1:6240606-6240625 Msa0713800:intron 50.0%
TCTTGCCAGGTGAGAGCTTA+GGG - chr5_1:6240811-6240830 None:intergenic 50.0%
TTCTTGCCAGGTGAGAGCTT+AGG - chr5_1:6240812-6240831 None:intergenic 50.0%
CTGAAGCATATGGTGGCAAG+CGG + chr5_1:6241057-6241076 Msa0713800:CDS 50.0%
GGCAAGCGGCAAATTAGTGA+AGG + chr5_1:6241071-6241090 Msa0713800:CDS 50.0%
CCTTCGCCAGAAAAGTTTGC+AGG - chr5_1:6241163-6241182 None:intergenic 50.0%
!! CCTGCAAACTTTTCTGGCGA+AGG + chr5_1:6241160-6241179 Msa0713800:intron 50.0%
! AATCTTTTGGCCTCCCTTCC+AGG - chr5_1:6241566-6241585 None:intergenic 50.0%
AGCAGCTGCAAAAGCAGTTG+CGG + chr5_1:6241686-6241705 Msa0713800:CDS 50.0%
AACAGCTGAAGCTGAAGCAG+AGG + chr5_1:6241758-6241777 Msa0713800:CDS 50.0%
AGGTAGGGCTGTTCATGGAT+TGG + chr5_1:6242430-6242449 Msa0713800:three_prime_UTR 50.0%
CAGAAGAAGACTGCATCCCG+AGG + chr5_1:6238660-6238679 Msa0713800:five_prime_UTR 55.0%
AGGCCGTGGACTTCTTCCAA+TGG + chr5_1:6238729-6238748 Msa0713800:exon 55.0%
GGCCGTGGACTTCTTCCAAT+GGG + chr5_1:6238730-6238749 Msa0713800:exon 55.0%
!! GAAGAGGCAGCTCTGAAAGC+TGG + chr5_1:6238781-6238800 Msa0713800:CDS 55.0%
GGAGTAGTCAAATACGGGGC+TGG + chr5_1:6238802-6238821 Msa0713800:CDS 55.0%
GAACTATGGCGGTCGAGGTT+GGG - chr5_1:6239242-6239261 None:intergenic 55.0%
TGAACTATGGCGGTCGAGGT+TGG - chr5_1:6239243-6239262 None:intergenic 55.0%
GGCTTAGGAGCTGCAACTTC+TGG - chr5_1:6239273-6239292 None:intergenic 55.0%
GCGGCAATGTCAGAACCCTT+TGG - chr5_1:6239900-6239919 None:intergenic 55.0%
GGGATGTTGCGTTGGATGTG+TGG + chr5_1:6240294-6240313 Msa0713800:intron 55.0%
! ATAGTGGAAACAGGCGCAGG+TGG + chr5_1:6240392-6240411 Msa0713800:intron 55.0%
CTCGGGGACTTCCATTCTTC+TGG + chr5_1:6240725-6240744 Msa0713800:intron 55.0%
AGTTCCCCTAAGCTCTCACC+TGG + chr5_1:6240803-6240822 Msa0713800:intron 55.0%
CTTGCCAGGTGAGAGCTTAG+GGG - chr5_1:6240810-6240829 None:intergenic 55.0%
CCTCCCTTCCAGGAGTAACA+AGG - chr5_1:6241556-6241575 None:intergenic 55.0%
CCTTGTTACTCCTGGAAGGG+AGG + chr5_1:6241553-6241572 Msa0713800:CDS 55.0%
AGCTGCAAAAGCAGTTGCGG+AGG + chr5_1:6241689-6241708 Msa0713800:CDS 55.0%
TGCTGTCTCAGCCTCAGCAA+TGG - chr5_1:6241724-6241743 None:intergenic 55.0%
TGAGGCTGAGACAGCAGCAA+GGG + chr5_1:6241728-6241747 Msa0713800:CDS 55.0%
! GAGGGGTGTGACAGCTCAAG+AGG + chr5_1:6241656-6241675 Msa0713800:CDS 60.0%
GGCAGAAGCTGCCATTGCTG+AGG + chr5_1:6241710-6241729 Msa0713800:CDS 60.0%
CTGAGGCTGAGACAGCAGCA+AGG + chr5_1:6241727-6241746 Msa0713800:CDS 60.0%
CTATGGCGGTCGAGGTTGGG+TGG - chr5_1:6239239-6239258 None:intergenic 65.0%
GGCTGAGACAGCAGCAAGGG+AGG + chr5_1:6241731-6241750 Msa0713800:CDS 65.0%
TGGCGGTCGAGGTTGGGTGG+TGG - chr5_1:6239236-6239255 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6237506 6242530 6237506 ID=Msa0713800;Name=Msa0713800
chr5_1 mRNA 6237506 6242530 6237506 ID=Msa0713800-mRNA-1;Parent=Msa0713800;Name=Msa0713800-mRNA-1;_AED=0.23;_eAED=0.23;_QI=438|1|1|1|0.57|0.37|8|536|294
chr5_1 exon 6237506 6237709 6237506 ID=Msa0713800-mRNA-1:exon:2639;Parent=Msa0713800-mRNA-1
chr5_1 exon 6237999 6238110 6237999 ID=Msa0713800-mRNA-1:exon:2640;Parent=Msa0713800-mRNA-1
chr5_1 exon 6238626 6238897 6238626 ID=Msa0713800-mRNA-1:exon:2641;Parent=Msa0713800-mRNA-1
chr5_1 exon 6239132 6239340 6239132 ID=Msa0713800-mRNA-1:exon:2642;Parent=Msa0713800-mRNA-1
chr5_1 exon 6239854 6239938 6239854 ID=Msa0713800-mRNA-1:exon:2643;Parent=Msa0713800-mRNA-1
chr5_1 exon 6241009 6241092 6241009 ID=Msa0713800-mRNA-1:exon:2644;Parent=Msa0713800-mRNA-1
chr5_1 exon 6241489 6241937 6241489 ID=Msa0713800-mRNA-1:exon:2645;Parent=Msa0713800-mRNA-1
chr5_1 exon 6242087 6242530 6242087 ID=Msa0713800-mRNA-1:exon:2646;Parent=Msa0713800-mRNA-1
chr5_1 five_prime_UTR 6237506 6237709 6237506 ID=Msa0713800-mRNA-1:five_prime_utr;Parent=Msa0713800-mRNA-1
chr5_1 five_prime_UTR 6237999 6238110 6237999 ID=Msa0713800-mRNA-1:five_prime_utr;Parent=Msa0713800-mRNA-1
chr5_1 five_prime_UTR 6238626 6238747 6238626 ID=Msa0713800-mRNA-1:five_prime_utr;Parent=Msa0713800-mRNA-1
chr5_1 CDS 6238748 6238897 6238748 ID=Msa0713800-mRNA-1:cds;Parent=Msa0713800-mRNA-1
chr5_1 CDS 6239132 6239340 6239132 ID=Msa0713800-mRNA-1:cds;Parent=Msa0713800-mRNA-1
chr5_1 CDS 6239854 6239938 6239854 ID=Msa0713800-mRNA-1:cds;Parent=Msa0713800-mRNA-1
chr5_1 CDS 6241009 6241092 6241009 ID=Msa0713800-mRNA-1:cds;Parent=Msa0713800-mRNA-1
chr5_1 CDS 6241489 6241845 6241489 ID=Msa0713800-mRNA-1:cds;Parent=Msa0713800-mRNA-1
chr5_1 three_prime_UTR 6241846 6241937 6241846 ID=Msa0713800-mRNA-1:three_prime_utr;Parent=Msa0713800-mRNA-1
chr5_1 three_prime_UTR 6242087 6242530 6242087 ID=Msa0713800-mRNA-1:three_prime_utr;Parent=Msa0713800-mRNA-1
Gene Sequence

>Msa0713800

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACCATTCTTACAGACCCAGATTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCACCCCCGAAAAATGAAAATAACCACCACCCAACCTCGACCGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTTTCAGTTTCTGGTGGAACATCTACTTCCAAAGAACAAATATCAAGATTGGACAGCCTTATATTCGACTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTGCCGCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCATAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCCGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGCCAACATCCTTTCAAAATCTCAAATTGATGTTGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTAGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCAAGGGAGGCTGAAACAGCTGAAGCTGAAGCAGAGGCTGCACGTGTGTTTGCAAAAGCAGCAACGAAGGCACTAAAATGCAGAAGACTTAATATTTGGTAA
Protein sequence

>Msa0713800

MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGGTSTSKEQISRLDSLIFDSIVKLKEPKGSDIAAIAAYIEDQYRSPPNLIKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDANILSKSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAATKALKCRRLNIW*