AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756040 MtrunA17_Chr5g0401061 98.980 294 3 0 1 294 1 294 0.0 587
Msa0756040 MtrunA17_Chr4g0054131 65.806 310 89 6 1 294 1 309 1.15e-105 310
Msa0756040 MtrunA17_Chr2g0293381 48.133 241 118 5 1 236 1 239 1.75e-65 207
Msa0756040 MtrunA17_Chr8g0384671 48.117 239 119 5 1 236 1 237 1.98e-63 202
Msa0756040 MtrunA17_Chr1g0166681 66.292 89 28 1 1 89 1 87 4.69e-33 120
Msa0756040 MtrunA17_Chr8g0342871 32.740 281 162 5 1 270 1 265 6.74e-32 119
Msa0756040 MtrunA17_Chr8g0383821 43.519 108 60 1 1 107 1 108 6.89e-24 94.4
Msa0756040 MtrunA17_Chr2g0329921 72.414 58 16 0 1 58 1 58 5.77e-22 93.6
Msa0756040 MtrunA17_Chr1g0195261 66.000 50 17 0 1 50 1 50 4.05e-16 71.2
Msa0756040 MtrunA17_Chr1g0195251 38.017 121 71 2 121 241 295 411 4.72e-14 72.0
Msa0756040 MtrunA17_Chr3g0107471 60.377 53 17 2 5 56 569 618 6.10e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756040 AT5G67580.2 53.925 293 131 1 1 289 1 293 2.22e-76 235
Msa0756040 AT5G67580.1 53.925 293 131 1 1 289 1 293 2.22e-76 235
Msa0756040 AT1G49950.3 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0756040 AT1G49950.1 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0756040 AT1G49950.2 48.971 243 116 5 1 238 1 240 7.54e-71 221
Msa0756040 AT3G49850.1 51.186 295 132 5 1 289 1 289 7.48e-67 211
Msa0756040 AT3G49850.2 51.186 295 132 5 1 289 1 289 7.48e-67 211
Msa0756040 AT1G72740.2 33.798 287 167 5 1 284 1 267 6.84e-32 120
Msa0756040 AT1G72740.1 33.798 287 173 6 1 284 1 273 2.77e-30 115
Msa0756040 AT1G17520.4 35.500 200 112 3 1 187 1 196 7.55e-29 112
Msa0756040 AT1G17520.1 32.302 291 163 7 1 275 1 273 1.85e-28 111
Msa0756040 AT1G17520.3 35.821 201 111 4 1 187 1 197 3.68e-28 110
Msa0756040 AT1G17520.2 32.534 292 162 8 1 275 1 274 8.97e-28 109

Find 123 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGCCTCTTTCAGTTTC+TGG 0.037607 5_2:+10046989 Msa0756040:CDS
TATATTCCTGGGAATGTATT+TGG 0.155401 5_2:-10049862 None:intergenic
ATGTGCAATTGAAGTTAATT+TGG 0.194499 5_2:+10045773 Msa0756040:five_prime_UTR
TAGAAACATTGCCAAATCTT+AGG 0.197424 5_2:-10050077 None:intergenic
GGCTTAGGAGCTGCAACTTC+TGG 0.214227 5_2:-10046974 None:intergenic
AATGCAGAAGACTTAATATT+TGG 0.225595 5_2:+10049528 Msa0756040:CDS
CTGTTCATGGATTGGTTTAT+AGG 0.229623 5_2:+10050142 Msa0756040:three_prime_UTR
CGCAAAATGGTGCTGAAATC+TGG 0.244024 5_2:-10046554 None:intergenic
TAACCTTGATATTTGTTCTT+TGG 0.249384 5_2:-10047026 None:intergenic
GAACCAGTTTGCTTTGATTC+AGG 0.268324 5_2:-10050224 None:intergenic
AGCATTCAAAATGGGCTAAA+AGG 0.270295 5_2:-10049612 None:intergenic
ATGCATTAAGTAATGTTTCT+TGG 0.282657 5_2:-10049563 None:intergenic
ACATAAATGTGACTGCAATA+TGG 0.284211 5_2:+10046849 Msa0756040:CDS
TTCTGGATTATATTGAACTA+TGG 0.296937 5_2:-10046957 None:intergenic
GTTTGAAAAGAGATCAATTC+AGG 0.318214 5_2:-10045735 None:intergenic
AATACATTCCCAGGAATATA+TGG 0.333903 5_2:+10049865 Msa0756040:three_prime_UTR
ATGAACAGCCCTACCTAGAT+AGG 0.334316 5_2:-10050127 None:intergenic
CTAGGAGAAAGCATTCAAAA+TGG 0.335895 5_2:-10049621 None:intergenic
CAGGTGAAGCCATTGAAGTT+TGG 0.341585 5_2:-10050205 None:intergenic
ATTTGAACGCATGCGCAAAA+TGG 0.355071 5_2:-10046567 None:intergenic
CATAAATGTGACTGCAATAT+GGG 0.356271 5_2:+10046850 Msa0756040:CDS
TGACAATCGAGTCGAATATA+AGG 0.364822 5_2:-10047567 None:intergenic
GAAAGGGTATAGGTGCGAAT+TGG 0.368255 5_2:-10045344 None:intergenic
TGAAGTTAATTTGGCTATTG+AGG 0.371174 5_2:+10045782 Msa0756040:five_prime_UTR
AAAGGGTATAGGTGCGAATT+GGG 0.374310 5_2:-10045343 None:intergenic
ATAATCTGAGCTGTGGTTGC+TGG 0.375315 5_2:+10045707 Msa0756040:five_prime_UTR
TCAAATACGGGGCTGGAAAA+TGG 0.375403 5_2:+10046513 Msa0756040:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 5_2:-10046461 None:intergenic
TTTCATAATGCGCCCTATCT+AGG 0.381804 5_2:+10050114 Msa0756040:three_prime_UTR
AGAAACATTGCCAAATCTTA+GGG 0.386270 5_2:-10050076 None:intergenic
AAGCCATTGAAGTTTGGTTC+GGG 0.398061 5_2:-10050199 None:intergenic
ACATGTTCACCATATATTCC+TGG 0.402159 5_2:-10049874 None:intergenic
GAACTATGGCGGTCGAGGTT+GGG 0.406154 5_2:-10046943 None:intergenic
AGCAGCTGCAAAAGCAGTTG+CGG 0.409911 5_2:+10049394 Msa0756040:CDS
GACAGTAACTTTATGAGGTT+TGG 0.411444 5_2:-10048735 None:intergenic
CGCCATTGCTGCTTATATAG+AGG 0.411827 5_2:+10047621 Msa0756040:CDS
ATGCTCTTCCTTGTTACTCC+TGG 0.423977 5_2:+10049253 Msa0756040:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.425779 5_2:+10046453 Msa0756040:CDS
GAAGAGGCAGCTCTGAAAGC+TGG 0.428221 5_2:+10046485 Msa0756040:CDS
AGCTGCAAAAGCAGTTGCGG+AGG 0.430575 5_2:+10049397 Msa0756040:CDS
GAAGCCATTGAAGTTTGGTT+CGG 0.433007 5_2:-10050200 None:intergenic
TTGTTGACAGTAACTTTATG+AGG 0.436494 5_2:-10048740 None:intergenic
TATCTAGGTAGGGCTGTTCA+TGG 0.446835 5_2:+10050129 Msa0756040:three_prime_UTR
TTAAGTAATGTTTCTTGGTA+AGG 0.449768 5_2:-10049558 None:intergenic
TGGCTATTGAGGTCAATGTT+TGG 0.455593 5_2:+10045793 Msa0756040:five_prime_UTR
CCAGAAACTGAAAGAGGCTT+AGG 0.456807 5_2:-10046989 None:intergenic
AGGTAGGGCTGTTCATGGAT+TGG 0.462926 5_2:+10050134 Msa0756040:three_prime_UTR
CGACTCGATTGTCAAGTTGA+AGG 0.467379 5_2:+10047576 Msa0756040:CDS
TGAACTATGGCGGTCGAGGT+TGG 0.475508 5_2:-10046944 None:intergenic
AAAGCTGGAGTAGTCAAATA+CGG 0.485337 5_2:+10046500 Msa0756040:CDS
GTCAACAAAACTGAAGCATA+TGG 0.488294 5_2:+10048755 Msa0756040:CDS
TAAGCTATGAACAGGACAAA+TGG 0.495183 5_2:+10046822 Msa0756040:intron
TGACTGCAATATGGGGATCC+AGG 0.496295 5_2:+10046858 Msa0756040:CDS
TGAATGGATCGGAGAATGAA+AGG 0.497750 5_2:-10045361 None:intergenic
GGCCGTGGACTTCTTCCAAT+GGG 0.500319 5_2:+10046434 Msa0756040:exon
AAGCCTCTTTCAGTTTCTGG+TGG 0.504900 5_2:+10046992 Msa0756040:CDS
CTTCCTTGTTACTCCTGGAA+GGG 0.505904 5_2:+10049258 Msa0756040:CDS
GAAATCTGGGTCTGTAAGAA+TGG 0.507475 5_2:-10046540 None:intergenic
GCGGCAATGTCAGAACCCTT+TGG 0.508392 5_2:-10047601 None:intergenic
CATGTTCACCATATATTCCT+GGG 0.508863 5_2:-10049873 None:intergenic
TCTTCCTTGTTACTCCTGGA+AGG 0.509910 5_2:+10049257 Msa0756040:CDS
TTATGAGGTTTGGTGGAGAC+CGG 0.510215 5_2:-10048725 None:intergenic
GACAGGTAAATCATAAGTAC+AGG 0.511866 5_2:+10049192 Msa0756040:intron
AGTAACTTTATGAGGTTTGG+TGG 0.512273 5_2:-10048732 None:intergenic
TAGGAGAAAGCATTCAAAAT+GGG 0.512658 5_2:-10049620 None:intergenic
AGTTAACCAAATACATTCCC+AGG 0.513886 5_2:+10049856 Msa0756040:three_prime_UTR
TGCTGTCTCAGCCTCAGCAA+TGG 0.514472 5_2:-10049429 None:intergenic
GGCTGAGACAGCAGCAAGGG+AGG 0.514772 5_2:+10049439 Msa0756040:CDS
ATAATGCGCCCTATCTAGGT+AGG 0.529910 5_2:+10050118 Msa0756040:three_prime_UTR
ATCGGAGAATGAAAGGGTAT+AGG 0.531059 5_2:-10045354 None:intergenic
AAATTAAAGAAGAAATTGAA+TGG 0.532572 5_2:-10045377 None:intergenic
TGGCGGTCGAGGTTGGGTGG+TGG 0.532625 5_2:-10046937 None:intergenic
GGAGTAGTCAAATACGGGGC+TGG 0.532847 5_2:+10046506 Msa0756040:CDS
CTTCCAAAGAACAAATATCA+AGG 0.532967 5_2:+10047023 Msa0756040:CDS
AAACCCGAACCAAACTTCAA+TGG 0.535228 5_2:+10050196 Msa0756040:three_prime_UTR
AAGCTGGAGTAGTCAAATAC+GGG 0.536563 5_2:+10046501 Msa0756040:CDS
AAAGAAGAAATTGAATGGAT+CGG 0.537721 5_2:-10045372 None:intergenic
GCAAAATGGTGCTGAAATCT+GGG 0.539501 5_2:-10046553 None:intergenic
ATATTGAACTATGGCGGTCG+AGG 0.543535 5_2:-10046948 None:intergenic
GAACAAAACTACAAAACAGT+TGG 0.546905 5_2:+10050171 Msa0756040:three_prime_UTR
CCTTGTTACTCCTGGAAGGG+AGG 0.547136 5_2:+10049261 Msa0756040:CDS
GGCAGAAGCTGCCATTGCTG+AGG 0.547830 5_2:+10049418 Msa0756040:CDS
AAAACAATACTGTCATAAGA+AGG 0.548234 5_2:+10046413 Msa0756040:five_prime_UTR
GAATGGATCGGAGAATGAAA+GGG 0.551647 5_2:-10045360 None:intergenic
AAATATCTTTCGTATTCCCA+CGG 0.558769 5_2:+10049957 Msa0756040:three_prime_UTR
TACCTCTATATAAGCAGCAA+TGG 0.560953 5_2:-10047623 None:intergenic
TGAGGCTGAGACAGCAGCAA+GGG 0.562956 5_2:+10049436 Msa0756040:CDS
CTATGGCGGTCGAGGTTGGG+TGG 0.567809 5_2:-10046940 None:intergenic
TAGGGCGCATTATGAAAAGA+TGG 0.567874 5_2:-10050108 None:intergenic
TTCTGCTTAGGAGCACCCAT+TGG 0.569658 5_2:-10046449 None:intergenic
TACCTCAATAGGATCAATAC+CGG 0.570066 5_2:+10048706 Msa0756040:intron
GAAATGGACTGCAGAAGAAG+AGG 0.574527 5_2:+10046469 Msa0756040:CDS
TGTCAAGTTGAAGGAGCCAA+AGG 0.577322 5_2:+10047585 Msa0756040:CDS
AATTGGGAGAATTTACGTGC+GGG 0.578991 5_2:-10045327 None:intergenic
AGGCCGTGGACTTCTTCCAA+TGG 0.581127 5_2:+10046433 Msa0756040:exon
GCGTTCAAATGTAGATCTCA+AGG 0.582023 5_2:+10046580 Msa0756040:CDS
CTCTATATAAGCAGCAATGG+CGG 0.582614 5_2:-10047620 None:intergenic
GTCAAGTTGAAGGAGCCAAA+GGG 0.586146 5_2:+10047586 Msa0756040:CDS
CTAGTACTAGAGAAAACCTC+GGG 0.586423 5_2:-10046380 None:intergenic
GAGGGGTGTGACAGCTCAAG+AGG 0.591616 5_2:+10049364 Msa0756040:CDS
CCTCCCTTCCAGGAGTAACA+AGG 0.596501 5_2:-10049261 None:intergenic
GTTCCACCAGAAACTGAAAG+AGG 0.604200 5_2:-10046995 None:intergenic
TAATGCGCCCTATCTAGGTA+GGG 0.611369 5_2:+10050119 Msa0756040:three_prime_UTR
CTGAGGCTGAGACAGCAGCA+AGG 0.616768 5_2:+10049435 Msa0756040:CDS
AACAGCTGAAGCTGAAGCAG+AGG 0.618779 5_2:+10049466 Msa0756040:CDS
GTTTGCAAAAGCAGCAACGA+AGG 0.621698 5_2:+10049499 Msa0756040:CDS
TGAACAGCCCTACCTAGATA+GGG 0.624485 5_2:-10050126 None:intergenic
GAAACATTGCCAAATCTTAG+GGG 0.627354 5_2:-10050075 None:intergenic
CTGAAGCATATGGTGGCAAG+CGG 0.627992 5_2:+10048765 Msa0756040:CDS
GAAATAATACTGCAATGCAA+AGG 0.631678 5_2:+10050005 Msa0756040:three_prime_UTR
AATATGGGGATCCAGGCAGA+AGG 0.633799 5_2:+10046865 Msa0756040:CDS
TGGATTATATTGAACTATGG+CGG 0.635820 5_2:-10046954 None:intergenic
GGCAAGCGGCAAATTAGTGA+AGG 0.638026 5_2:+10048779 Msa0756040:CDS
GCTATGAACAGGACAAATGG+AGG 0.639785 5_2:+10046825 Msa0756040:intron
ATAAATGTGACTGCAATATG+GGG 0.648699 5_2:+10046851 Msa0756040:CDS
CACCCATTGGAAGAAGTCCA+CGG 0.659202 5_2:-10046436 None:intergenic
TCTAGTACTAGAGAAAACCT+CGG 0.664893 5_2:-10046381 None:intergenic
CAGAAGAAGACTGCATCCCG+AGG 0.670596 5_2:+10046364 Msa0756040:five_prime_UTR
AACAAAACTGAAGCATATGG+TGG 0.677408 5_2:+10048758 Msa0756040:CDS
ATACTGTCATAAGAAGGCCG+TGG 0.682217 5_2:+10046419 Msa0756040:five_prime_UTR
AGCTGGAGTAGTCAAATACG+GGG 0.718064 5_2:+10046502 Msa0756040:CDS
GAATTGGGAGAATTTACGTG+CGG 0.721503 5_2:-10045328 None:intergenic
CAGACAAATAATCTGAGCTG+TGG 0.721649 5_2:+10045700 Msa0756040:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAACTTTATAAAAAATTA+GGG - chr5_2:10049657-10049676 None:intergenic 10.0%
!! AGTTAACTTTATAAAAAATT+AGG - chr5_2:10049658-10049677 None:intergenic 10.0%
!! ATTAGCATTATAAAAAATTA+GGG - chr5_2:10049806-10049825 None:intergenic 10.0%
!! AATTAGCATTATAAAAAATT+AGG - chr5_2:10049807-10049826 None:intergenic 10.0%
!! AAATTAAAGAAGAAATTGAA+TGG - chr5_2:10045380-10045399 None:intergenic 15.0%
!!! AAAACAAAATTTGTTAATGT+TGG + chr5_2:10045502-10045521 Msa0756040:intron 15.0%
!!! TTAAGTCTTATAATTATTGA+AGG + chr5_2:10046294-10046313 Msa0756040:intron 15.0%
!! AGTAAAATTATTGTTATGTT+AGG + chr5_2:10046649-10046668 Msa0756040:intron 15.0%
!!! CATTAATTCATTTAAAACTT+TGG - chr5_2:10047224-10047243 None:intergenic 15.0%
!!! TAAAAGTATTTTAAACTCTT+TGG + chr5_2:10047884-10047903 Msa0756040:intron 15.0%
!! ATAAACAACATATAAATCAA+TGG - chr5_2:10048377-10048396 None:intergenic 15.0%
!! AGTAATATAGGTTTATTAAA+AGG - chr5_2:10049101-10049120 None:intergenic 15.0%
!! TATTTATCTTACAGTAATAT+AGG - chr5_2:10049113-10049132 None:intergenic 15.0%
!! TATTACTGTAAGATAAATAT+TGG + chr5_2:10049114-10049133 Msa0756040:intron 15.0%
!! AAGTAATTTAATATGATACT+TGG + chr5_2:10049139-10049158 Msa0756040:intron 15.0%
!!! AATCATTTTTTTTTGTAGCA+AGG + chr5_2:10045585-10045604 Msa0756040:intron 20.0%
!! TATGAATTGTATTGTTTCAA+TGG - chr5_2:10045629-10045648 None:intergenic 20.0%
!! TTGTGAAAAATCATCAAATT+AGG - chr5_2:10045662-10045681 None:intergenic 20.0%
!!! ATAACAATTTTTGGTGTATT+GGG - chr5_2:10045927-10045946 None:intergenic 20.0%
!!! AATAACAATTTTTGGTGTAT+TGG - chr5_2:10045928-10045947 None:intergenic 20.0%
!!! GTAAAAAGTTATAACTTTTG+GGG - chr5_2:10045978-10045997 None:intergenic 20.0%
!!! CGTAAAAAGTTATAACTTTT+GGG - chr5_2:10045979-10045998 None:intergenic 20.0%
!! TCCAATTATGAATCTAAATA+GGG - chr5_2:10046002-10046021 None:intergenic 20.0%
!! ATCCAATTATGAATCTAAAT+AGG - chr5_2:10046003-10046022 None:intergenic 20.0%
!! ATTCATAATTGGATAGAAAT+TGG + chr5_2:10046009-10046028 Msa0756040:intron 20.0%
!! TGGTATATGATAGAATATTA+TGG + chr5_2:10046111-10046130 Msa0756040:intron 20.0%
!! GTTGTTTAGATTCAAAATTA+TGG + chr5_2:10046188-10046207 Msa0756040:intron 20.0%
!! TCATATTAAACTATATACGT+AGG + chr5_2:10046772-10046791 Msa0756040:intron 20.0%
!! TTACACTTTATAGAACTAAA+TGG + chr5_2:10047072-10047091 Msa0756040:intron 20.0%
!!! AAACATTTTGTAGTTGTAAT+TGG - chr5_2:10047409-10047428 None:intergenic 20.0%
!!! TCTTTTTAATAATGACAGAT+TGG + chr5_2:10047540-10047559 Msa0756040:intron 20.0%
!! GATTATATATACCATTAATG+AGG - chr5_2:10047664-10047683 None:intergenic 20.0%
!!! TTTCTCATATAGTTTTTTCT+AGG - chr5_2:10048212-10048231 None:intergenic 20.0%
!! GAAAAACTTAGATATTAATG+AGG + chr5_2:10048239-10048258 Msa0756040:intron 20.0%
!!! AAAAAACTGCTCTAATATTT+TGG - chr5_2:10048461-10048480 None:intergenic 20.0%
!! ATATCCAATAAATTATTCAG+TGG - chr5_2:10048903-10048922 None:intergenic 20.0%
!! TTATTGGATATTGAATGTTA+TGG + chr5_2:10048912-10048931 Msa0756040:intron 20.0%
!! ATTGGTAAAGAGAAATTAAT+TGG + chr5_2:10048969-10048988 Msa0756040:intron 20.0%
!! TGAATACAAAAAATCTGTTA+TGG + chr5_2:10049007-10049026 Msa0756040:intron 20.0%
!!! TTTTAACACAATTACAAACA+TGG - chr5_2:10049903-10049922 None:intergenic 20.0%
! AAAGAAGAAATTGAATGGAT+CGG - chr5_2:10045375-10045394 None:intergenic 25.0%
!!! ATTTCTTCTTTAATTTTCCC+AGG + chr5_2:10045384-10045403 Msa0756040:five_prime_UTR 25.0%
!!! ACAAAATTTGTTAATGTTGG+TGG + chr5_2:10045505-10045524 Msa0756040:intron 25.0%
!! ATTGATCTCTTTTCAAACAT+TGG + chr5_2:10045740-10045759 Msa0756040:five_prime_UTR 25.0%
! ATGTGCAATTGAAGTTAATT+TGG + chr5_2:10045773-10045792 Msa0756040:five_prime_UTR 25.0%
!! GGGACAAAAATAACAATTTT+TGG - chr5_2:10045936-10045955 None:intergenic 25.0%
!!! GTTATTTTTGTCCCAAAAAA+TGG + chr5_2:10045942-10045961 Msa0756040:intron 25.0%
!! GCGTAAAAAGTTATAACTTT+TGG - chr5_2:10045980-10045999 None:intergenic 25.0%
!! AGATTTAGAGTTTAATGAGT+TGG + chr5_2:10046077-10046096 Msa0756040:intron 25.0%
!! ATGAGTTGGATAGAAATATA+TGG + chr5_2:10046091-10046110 Msa0756040:intron 25.0%
! AAAACAATACTGTCATAAGA+AGG + chr5_2:10046413-10046432 Msa0756040:five_prime_UTR 25.0%
!!! TTTGTTTTAAATGTTCTAGC+AGG + chr5_2:10046608-10046627 Msa0756040:intron 25.0%
! TAACTGTTTACTTTATCACA+AGG + chr5_2:10046708-10046727 Msa0756040:intron 25.0%
!!! TGGTGGTTATTTTCATTTTT+CGG - chr5_2:10046923-10046942 None:intergenic 25.0%
! TTCTGGATTATATTGAACTA+TGG - chr5_2:10046960-10046979 None:intergenic 25.0%
! TAACCTTGATATTTGTTCTT+TGG - chr5_2:10047029-10047048 None:intergenic 25.0%
! TATAATAGTTATCAGCTCTA+AGG + chr5_2:10047173-10047192 Msa0756040:intron 25.0%
!! AAACAAGTTGCAAACAATTT+TGG + chr5_2:10047248-10047267 Msa0756040:intron 25.0%
! TATGAAGGAATTGGAATAAA+TGG - chr5_2:10047787-10047806 None:intergenic 25.0%
! TATTAATGAGGATCCAAATA+AGG + chr5_2:10048251-10048270 Msa0756040:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG - chr5_2:10048267-10048286 None:intergenic 25.0%
! AGTTATTAGCAGAAAATGAT+TGG + chr5_2:10048951-10048970 Msa0756040:intron 25.0%
!!! CATCAATTTGAGATTTTGAA+AGG - chr5_2:10049328-10049347 None:intergenic 25.0%
!!! ATGTTGAGCTTTTAAAAATG+AGG + chr5_2:10049345-10049364 Msa0756040:CDS 25.0%
!!! TGTTGAGCTTTTAAAAATGA+GGG + chr5_2:10049346-10049365 Msa0756040:CDS 25.0%
! AATGCAGAAGACTTAATATT+TGG + chr5_2:10049528-10049547 Msa0756040:CDS 25.0%
! TTAAGTAATGTTTCTTGGTA+AGG - chr5_2:10049561-10049580 None:intergenic 25.0%
! ATGCATTAAGTAATGTTTCT+TGG - chr5_2:10049566-10049585 None:intergenic 25.0%
AAAATGATGAATACTGACCT+GGG - chr5_2:10045404-10045423 None:intergenic 30.0%
AAAAATGATGAATACTGACC+TGG - chr5_2:10045405-10045424 None:intergenic 30.0%
GTTTGAAAAGAGATCAATTC+AGG - chr5_2:10045738-10045757 None:intergenic 30.0%
! TGAAGTTAATTTGGCTATTG+AGG + chr5_2:10045782-10045801 Msa0756040:five_prime_UTR 30.0%
! TCCCAAAAAATGGTGATTTT+TGG + chr5_2:10045952-10045971 Msa0756040:intron 30.0%
!!! GCCAAAAATCACCATTTTTT+GGG - chr5_2:10045956-10045975 None:intergenic 30.0%
GCCCTATTTAGATTCATAAT+TGG + chr5_2:10045998-10046017 Msa0756040:intron 30.0%
CATAATTGGATAGAAATTGG+AGG + chr5_2:10046012-10046031 Msa0756040:intron 30.0%
! GTTTCTCTTACAGTTTTTCT+AGG - chr5_2:10046048-10046067 None:intergenic 30.0%
! TTCCTATACTGTTGCAATTT+TGG - chr5_2:10046256-10046275 None:intergenic 30.0%
AAATTGCAACAGTATAGGAA+CGG + chr5_2:10046256-10046275 Msa0756040:intron 30.0%
! CAATAAAGTCAGACATTTTG+TGG + chr5_2:10046332-10046351 Msa0756040:five_prime_UTR 30.0%
TAAATGTTCTAGCAGGTTAT+AGG + chr5_2:10046615-10046634 Msa0756040:intron 30.0%
ACATAAATGTGACTGCAATA+TGG + chr5_2:10046849-10046868 Msa0756040:CDS 30.0%
CATAAATGTGACTGCAATAT+GGG + chr5_2:10046850-10046869 Msa0756040:CDS 30.0%
ATAAATGTGACTGCAATATG+GGG + chr5_2:10046851-10046870 Msa0756040:CDS 30.0%
!! TGGTTATTTTCATTTTTCGG+GGG - chr5_2:10046920-10046939 None:intergenic 30.0%
!! GTGGTTATTTTCATTTTTCG+GGG - chr5_2:10046921-10046940 None:intergenic 30.0%
!! GGTGGTTATTTTCATTTTTC+GGG - chr5_2:10046922-10046941 None:intergenic 30.0%
TGGATTATATTGAACTATGG+CGG - chr5_2:10046957-10046976 None:intergenic 30.0%
CTTCCAAAGAACAAATATCA+AGG + chr5_2:10047023-10047042 Msa0756040:CDS 30.0%
! CATTTAAAACTTTGGTATGC+TGG - chr5_2:10047216-10047235 None:intergenic 30.0%
TCAGAAAACAATATACCTTG+TGG - chr5_2:10047288-10047307 None:intergenic 30.0%
! TGATGATTCTTTTCTAAGCA+TGG + chr5_2:10047332-10047351 Msa0756040:intron 30.0%
AAATTCACCACAATCTTAAG+GGG - chr5_2:10047473-10047492 None:intergenic 30.0%
CAAATTCACCACAATCTTAA+GGG - chr5_2:10047474-10047493 None:intergenic 30.0%
!!! TGGCAATGTTTTTTCAATGA+TGG + chr5_2:10047508-10047527 Msa0756040:intron 30.0%
ACTGAGTGAGGAAAAAAATT+TGG - chr5_2:10047710-10047729 None:intergenic 30.0%
TCAAACTGTTATGAAGGAAT+TGG - chr5_2:10047796-10047815 None:intergenic 30.0%
TATAGGTCAAACTGTTATGA+AGG - chr5_2:10047802-10047821 None:intergenic 30.0%
TAAAACAAGCATAGCAAAGA+TGG + chr5_2:10047977-10047996 Msa0756040:intron 30.0%
AAAACAAGCATAGCAAAGAT+GGG + chr5_2:10047978-10047997 Msa0756040:intron 30.0%
ACATATAAATCAATGGACCT+AGG - chr5_2:10048370-10048389 None:intergenic 30.0%
GTTAGAACTAGTTGAAATTG+TGG - chr5_2:10048407-10048426 None:intergenic 30.0%
!! ACTAGTTCTAACATGTAACT+CGG + chr5_2:10048415-10048434 Msa0756040:intron 30.0%
!!! ATATTTTGGTACCAGAAGAA+TGG - chr5_2:10048447-10048466 None:intergenic 30.0%
!!! AGAGCAGTTTTTTCATTTGA+TGG + chr5_2:10048468-10048487 Msa0756040:intron 30.0%
CTGAAATTGTTTACCTCAAT+AGG + chr5_2:10048695-10048714 Msa0756040:intron 30.0%
TTGTTGACAGTAACTTTATG+AGG - chr5_2:10048743-10048762 None:intergenic 30.0%
CTGTCCACTGAATAATTTAT+TGG + chr5_2:10048896-10048915 Msa0756040:intron 30.0%
CTTATGATTTACCTGTCATT+AGG - chr5_2:10049189-10049208 None:intergenic 30.0%
!! TTGAGATTTTGAAAGGATGT+TGG - chr5_2:10049321-10049340 None:intergenic 30.0%
!! GTTGAGCTTTTAAAAATGAG+GGG + chr5_2:10049347-10049366 Msa0756040:CDS 30.0%
!! TAGGAGAAAGCATTCAAAAT+GGG - chr5_2:10049623-10049642 None:intergenic 30.0%
TATATTCCTGGGAATGTATT+TGG - chr5_2:10049865-10049884 None:intergenic 30.0%
AATACATTCCCAGGAATATA+TGG + chr5_2:10049865-10049884 Msa0756040:three_prime_UTR 30.0%
AAATATCTTTCGTATTCCCA+CGG + chr5_2:10049957-10049976 Msa0756040:three_prime_UTR 30.0%
GAAATAATACTGCAATGCAA+AGG + chr5_2:10050005-10050024 Msa0756040:three_prime_UTR 30.0%
AACAAAAATCCCCTAAGATT+TGG + chr5_2:10050066-10050085 Msa0756040:three_prime_UTR 30.0%
AGAAACATTGCCAAATCTTA+GGG - chr5_2:10050079-10050098 None:intergenic 30.0%
TAGAAACATTGCCAAATCTT+AGG - chr5_2:10050080-10050099 None:intergenic 30.0%
GAACAAAACTACAAAACAGT+TGG + chr5_2:10050171-10050190 Msa0756040:three_prime_UTR 30.0%
!!! CTTTCGTCTTTTGTTTTTCG+TGG - chr5_2:10045238-10045257 None:intergenic 35.0%
GATTATTTGTCTGCAGGAAA+AGG - chr5_2:10045693-10045712 None:intergenic 35.0%
!!! GGCCAAAAATCACCATTTTT+TGG - chr5_2:10045957-10045976 None:intergenic 35.0%
GAATCTAAACAACAACAACC+AGG - chr5_2:10046181-10046200 None:intergenic 35.0%
GACCAAAATTGCAACAGTAT+AGG + chr5_2:10046251-10046270 Msa0756040:intron 35.0%
AATTGCAACAGTATAGGAAC+GGG + chr5_2:10046257-10046276 Msa0756040:intron 35.0%
TATTGAAGGATGACGTTTGT+AGG + chr5_2:10046308-10046327 Msa0756040:intron 35.0%
TCTAGTACTAGAGAAAACCT+CGG - chr5_2:10046384-10046403 None:intergenic 35.0%
AAAGCTGGAGTAGTCAAATA+CGG + chr5_2:10046500-10046519 Msa0756040:CDS 35.0%
! ATGTGCTTTAAGCTATGAAC+AGG + chr5_2:10046814-10046833 Msa0756040:intron 35.0%
TAAGCTATGAACAGGACAAA+TGG + chr5_2:10046822-10046841 Msa0756040:intron 35.0%
!!! TTATTTTCATTTTTCGGGGG+TGG - chr5_2:10046917-10046936 None:intergenic 35.0%
ACTAAATGGTCTGTGATTCT+TGG + chr5_2:10047086-10047105 Msa0756040:intron 35.0%
! GCTATAATTTGTGTACCACA+AGG + chr5_2:10047270-10047289 Msa0756040:intron 35.0%
ACAATATCCCCTTAAGATTG+TGG + chr5_2:10047463-10047482 Msa0756040:intron 35.0%
GCAAATTCACCACAATCTTA+AGG - chr5_2:10047475-10047494 None:intergenic 35.0%
AATTTGCAACGTCAATCATG+TGG + chr5_2:10047488-10047507 Msa0756040:intron 35.0%
TGACAATCGAGTCGAATATA+AGG - chr5_2:10047570-10047589 None:intergenic 35.0%
TACCTCTATATAAGCAGCAA+TGG - chr5_2:10047626-10047645 None:intergenic 35.0%
TACCTTGATTGCCTCATTAA+TGG + chr5_2:10047650-10047669 Msa0756040:intron 35.0%
TACCATTAATGAGGCAATCA+AGG - chr5_2:10047655-10047674 None:intergenic 35.0%
! TCATTTGAGATAGGATAGTG+TGG - chr5_2:10047760-10047779 None:intergenic 35.0%
! AATGGTCTGTCATTTGAGAT+AGG - chr5_2:10047769-10047788 None:intergenic 35.0%
GGGAGACTGAATAAAACTAT+AGG - chr5_2:10047819-10047838 None:intergenic 35.0%
! AGTCTCCCTCTAGAAAATAT+CGG + chr5_2:10047831-10047850 Msa0756040:intron 35.0%
AAGAACCAACACGAGAATAA+CGG + chr5_2:10047923-10047942 Msa0756040:intron 35.0%
AAACAAGCATAGCAAAGATG+GGG + chr5_2:10047979-10047998 Msa0756040:intron 35.0%
AACATTAGAGAGAGAGAGTT+GGG + chr5_2:10048053-10048072 Msa0756040:intron 35.0%
ACCTACAGTAGAAATGATAG+TGG + chr5_2:10048081-10048100 Msa0756040:intron 35.0%
TCCACTATCATTTCTACTGT+AGG - chr5_2:10048085-10048104 None:intergenic 35.0%
!! GTAGAAATGATAGTGGAAAC+AGG + chr5_2:10048088-10048107 Msa0756040:intron 35.0%
TCTCCTTATACAGAATCTAC+GGG - chr5_2:10048144-10048163 None:intergenic 35.0%
CTCTCCTTATACAGAATCTA+CGG - chr5_2:10048145-10048164 None:intergenic 35.0%
TATAAGGAGAGTAGATCAGA+TGG + chr5_2:10048154-10048173 Msa0756040:intron 35.0%
!! CTAGTTCTAACATGTAACTC+GGG + chr5_2:10048416-10048435 Msa0756040:intron 35.0%
!! TAGTTCTAACATGTAACTCG+GGG + chr5_2:10048417-10048436 Msa0756040:intron 35.0%
TACCTCAATAGGATCAATAC+CGG + chr5_2:10048706-10048725 Msa0756040:intron 35.0%
AGTAACTTTATGAGGTTTGG+TGG - chr5_2:10048735-10048754 None:intergenic 35.0%
GACAGTAACTTTATGAGGTT+TGG - chr5_2:10048738-10048757 None:intergenic 35.0%
GTCAACAAAACTGAAGCATA+TGG + chr5_2:10048755-10048774 Msa0756040:CDS 35.0%
AACAAAACTGAAGCATATGG+TGG + chr5_2:10048758-10048777 Msa0756040:CDS 35.0%
TACTCTTCGTTACTGAAACT+TGG + chr5_2:10048808-10048827 Msa0756040:intron 35.0%
GTTACTGAAACTTGGTTTCT+TGG + chr5_2:10048816-10048835 Msa0756040:intron 35.0%
AAACTTGGTTTCTTGGAACT+TGG + chr5_2:10048823-10048842 Msa0756040:intron 35.0%
!! CAGGAAAAGATACTGCTTTT+TGG - chr5_2:10048852-10048871 None:intergenic 35.0%
! TCTTTTCCTGCAAACTTTTC+TGG + chr5_2:10048862-10048881 Msa0756040:intron 35.0%
TGTTATGGTTACACTGTTAC+TGG + chr5_2:10048927-10048946 Msa0756040:intron 35.0%
TAGTGGGAGTGAAATTCTAT+TGG + chr5_2:10049062-10049081 Msa0756040:intron 35.0%
GACAGGTAAATCATAAGTAC+AGG + chr5_2:10049192-10049211 Msa0756040:intron 35.0%
!! TCTGCTTTTGGAGAATCTTT+TGG - chr5_2:10049287-10049306 None:intergenic 35.0%
!! AGCATTCAAAATGGGCTAAA+AGG - chr5_2:10049615-10049634 None:intergenic 35.0%
!! CTAGGAGAAAGCATTCAAAA+TGG - chr5_2:10049624-10049643 None:intergenic 35.0%
! TTTTGAATGCTTTCTCCTAG+TGG + chr5_2:10049624-10049643 Msa0756040:three_prime_UTR 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_2:10049642-10049661 None:intergenic 35.0%
ATGCATTGAGAAACGTTTCT+AGG - chr5_2:10049715-10049734 None:intergenic 35.0%
!! TAGGAGAAAGCATTCAAGAT+GGG - chr5_2:10049772-10049791 None:intergenic 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_2:10049642-10049661 None:intergenic 35.0%
AGTTAACCAAATACATTCCC+AGG + chr5_2:10049856-10049875 Msa0756040:three_prime_UTR 35.0%
CATGTTCACCATATATTCCT+GGG - chr5_2:10049876-10049895 None:intergenic 35.0%
ACATGTTCACCATATATTCC+TGG - chr5_2:10049877-10049896 None:intergenic 35.0%
CCATAGAGAATAAAAACCGT+GGG - chr5_2:10049976-10049995 None:intergenic 35.0%
TCCATAGAGAATAAAAACCG+TGG - chr5_2:10049977-10049996 None:intergenic 35.0%
! ACGGTTTTTATTCTCTATGG+AGG + chr5_2:10049976-10049995 Msa0756040:three_prime_UTR 35.0%
! CGGTTTTTATTCTCTATGGA+GGG + chr5_2:10049977-10049996 Msa0756040:three_prime_UTR 35.0%
! GGTTTTTATTCTCTATGGAG+GGG + chr5_2:10049978-10049997 Msa0756040:three_prime_UTR 35.0%
! GTTTTTATTCTCTATGGAGG+GGG + chr5_2:10049979-10049998 Msa0756040:three_prime_UTR 35.0%
GAAACATTGCCAAATCTTAG+GGG - chr5_2:10050078-10050097 None:intergenic 35.0%
!! CTGTTCATGGATTGGTTTAT+AGG + chr5_2:10050142-10050161 Msa0756040:three_prime_UTR 35.0%
!!! CGTCTTTTGTTTTTCGTGGA+AGG - chr5_2:10045234-10045253 None:intergenic 40.0%
AATTGGGAGAATTTACGTGC+GGG - chr5_2:10045330-10045349 None:intergenic 40.0%
GAATTGGGAGAATTTACGTG+CGG - chr5_2:10045331-10045350 None:intergenic 40.0%
! AAAGGGTATAGGTGCGAATT+GGG - chr5_2:10045346-10045365 None:intergenic 40.0%
! ATCGGAGAATGAAAGGGTAT+AGG - chr5_2:10045357-10045376 None:intergenic 40.0%
GAATGGATCGGAGAATGAAA+GGG - chr5_2:10045363-10045382 None:intergenic 40.0%
TGAATGGATCGGAGAATGAA+AGG - chr5_2:10045364-10045383 None:intergenic 40.0%
AGCTCAGATTATTTGTCTGC+AGG - chr5_2:10045699-10045718 None:intergenic 40.0%
CAGACAAATAATCTGAGCTG+TGG + chr5_2:10045700-10045719 Msa0756040:intron 40.0%
TGGCTATTGAGGTCAATGTT+TGG + chr5_2:10045793-10045812 Msa0756040:five_prime_UTR 40.0%
TGCAACAATGTGCGAAATTG+AGG - chr5_2:10045895-10045914 None:intergenic 40.0%
ATTGCAACAGTATAGGAACG+GGG + chr5_2:10046258-10046277 Msa0756040:intron 40.0%
CTAGTACTAGAGAAAACCTC+GGG - chr5_2:10046383-10046402 None:intergenic 40.0%
AAGCTGGAGTAGTCAAATAC+GGG + chr5_2:10046501-10046520 Msa0756040:CDS 40.0%
GAAATCTGGGTCTGTAAGAA+TGG - chr5_2:10046543-10046562 None:intergenic 40.0%
! GCAAAATGGTGCTGAAATCT+GGG - chr5_2:10046556-10046575 None:intergenic 40.0%
ATTTGAACGCATGCGCAAAA+TGG - chr5_2:10046570-10046589 None:intergenic 40.0%
GCGTTCAAATGTAGATCTCA+AGG + chr5_2:10046580-10046599 Msa0756040:CDS 40.0%
AATGGTCTGTGATTCTTGGT+TGG + chr5_2:10047090-10047109 Msa0756040:intron 40.0%
ACACGCACAAACTCACATAT+AGG + chr5_2:10047381-10047400 Msa0756040:intron 40.0%
CTCTATATAAGCAGCAATGG+CGG - chr5_2:10047623-10047642 None:intergenic 40.0%
! GCTGACCGATATTTTCTAGA+GGG - chr5_2:10047839-10047858 None:intergenic 40.0%
TTGTAAACTTGATCGCAAGC+AGG - chr5_2:10047861-10047880 None:intergenic 40.0%
!! TCGTGTTGGTTCTTATACAG+AGG - chr5_2:10047917-10047936 None:intergenic 40.0%
ACATTCCGTTATTCTCGTGT+TGG - chr5_2:10047931-10047950 None:intergenic 40.0%
! ACACGAGAATAACGGAATGT+TGG + chr5_2:10047931-10047950 Msa0756040:intron 40.0%
! CACGAGAATAACGGAATGTT+GGG + chr5_2:10047932-10047951 Msa0756040:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr5_2:10048018-10048037 Msa0756040:intron 40.0%
CAACATTAGAGAGAGAGAGT+TGG + chr5_2:10048052-10048071 Msa0756040:intron 40.0%
ACATTAGAGAGAGAGAGTTG+GGG + chr5_2:10048054-10048073 Msa0756040:intron 40.0%
AGACCCGTAGATTCTGTATA+AGG + chr5_2:10048138-10048157 Msa0756040:intron 40.0%
! TAAGGCTTGATGGTTGTTGT+TGG + chr5_2:10048332-10048351 Msa0756040:intron 40.0%
GTTGGAAATGTTTCTCTCCT+AGG + chr5_2:10048350-10048369 Msa0756040:intron 40.0%
TGCCTTCCTGTGTTTAAGAA+AGG + chr5_2:10048556-10048575 Msa0756040:intron 40.0%
AGCCTTTCTTAAACACAGGA+AGG - chr5_2:10048561-10048580 None:intergenic 40.0%
GCTAAGCCTTTCTTAAACAC+AGG - chr5_2:10048565-10048584 None:intergenic 40.0%
TAGTCGAACTACGCACATAT+GGG + chr5_2:10049030-10049049 Msa0756040:intron 40.0%
ATATGGGCATTCTCTGTAGT+GGG + chr5_2:10049046-10049065 Msa0756040:intron 40.0%
GTCATTAGGTATGTCAGACT+AGG - chr5_2:10049175-10049194 None:intergenic 40.0%
AGTCTGACATACCTAATGAC+AGG + chr5_2:10049175-10049194 Msa0756040:intron 40.0%
!!! GGAAGAGCATCTTCTTTTCT+CGG - chr5_2:10049243-10049262 None:intergenic 40.0%
! GCATCAGTTTTCTCTGCTTT+TGG - chr5_2:10049299-10049318 None:intergenic 40.0%
!! AGCATTCAAGATGGGCTAAA+AGG - chr5_2:10049764-10049783 None:intergenic 40.0%
!! CTAGGAGAAAGCATTCAAGA+TGG - chr5_2:10049773-10049792 None:intergenic 40.0%
TCTTGAATGCTTTCTCCTAG+TGG + chr5_2:10049773-10049792 Msa0756040:intron 40.0%
! CCCACGGTTTTTATTCTCTA+TGG + chr5_2:10049973-10049992 Msa0756040:three_prime_UTR 40.0%
TAGGGCGCATTATGAAAAGA+TGG - chr5_2:10050111-10050130 None:intergenic 40.0%
TTTCATAATGCGCCCTATCT+AGG + chr5_2:10050114-10050133 Msa0756040:three_prime_UTR 40.0%
AAACCCGAACCAAACTTCAA+TGG + chr5_2:10050196-10050215 Msa0756040:three_prime_UTR 40.0%
! AAGCCATTGAAGTTTGGTTC+GGG - chr5_2:10050202-10050221 None:intergenic 40.0%
GAAGCCATTGAAGTTTGGTT+CGG - chr5_2:10050203-10050222 None:intergenic 40.0%
! GAAAGGGTATAGGTGCGAAT+TGG - chr5_2:10045347-10045366 None:intergenic 45.0%
ATAATCTGAGCTGTGGTTGC+TGG + chr5_2:10045707-10045726 Msa0756040:five_prime_UTR 45.0%
!! ACTAAGTGGGATTGGCTACA+TGG - chr5_2:10046149-10046168 None:intergenic 45.0%
ATGTAGCCAATCCCACTTAG+TGG + chr5_2:10046148-10046167 Msa0756040:intron 45.0%
TGTAGCCAATCCCACTTAGT+GGG + chr5_2:10046149-10046168 Msa0756040:intron 45.0%
CTTATCCCACTAAGTGGGAT+TGG - chr5_2:10046157-10046176 None:intergenic 45.0%
CAGGACTTATCCCACTAAGT+GGG - chr5_2:10046162-10046181 None:intergenic 45.0%
TTGCAACAGTATAGGAACGG+GGG + chr5_2:10046259-10046278 Msa0756040:intron 45.0%
ATACTGTCATAAGAAGGCCG+TGG + chr5_2:10046419-10046438 Msa0756040:five_prime_UTR 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr5_2:10046464-10046483 None:intergenic 45.0%
!! GAAATGGACTGCAGAAGAAG+AGG + chr5_2:10046469-10046488 Msa0756040:CDS 45.0%
AGCTGGAGTAGTCAAATACG+GGG + chr5_2:10046502-10046521 Msa0756040:CDS 45.0%
TCAAATACGGGGCTGGAAAA+TGG + chr5_2:10046513-10046532 Msa0756040:CDS 45.0%
! CGCAAAATGGTGCTGAAATC+TGG - chr5_2:10046557-10046576 None:intergenic 45.0%
! GGTTTGAGATGCTACTGCTA+CGG + chr5_2:10046670-10046689 Msa0756040:intron 45.0%
GCTATGAACAGGACAAATGG+AGG + chr5_2:10046825-10046844 Msa0756040:intron 45.0%
!!! TTTCATTTTTCGGGGGTGGT+AGG - chr5_2:10046913-10046932 None:intergenic 45.0%
ATATTGAACTATGGCGGTCG+AGG - chr5_2:10046951-10046970 None:intergenic 45.0%
CCAGAAACTGAAAGAGGCTT+AGG - chr5_2:10046992-10047011 None:intergenic 45.0%
CCTAAGCCTCTTTCAGTTTC+TGG + chr5_2:10046989-10047008 Msa0756040:CDS 45.0%
! AAGCCTCTTTCAGTTTCTGG+TGG + chr5_2:10046992-10047011 Msa0756040:CDS 45.0%
GTTCCACCAGAAACTGAAAG+AGG - chr5_2:10046998-10047017 None:intergenic 45.0%
!! CGACTCGATTGTCAAGTTGA+AGG + chr5_2:10047576-10047595 Msa0756040:CDS 45.0%
!! TGTCAAGTTGAAGGAGCCAA+AGG + chr5_2:10047585-10047604 Msa0756040:CDS 45.0%
!! GTCAAGTTGAAGGAGCCAAA+GGG + chr5_2:10047586-10047605 Msa0756040:CDS 45.0%
! CGCCATTGCTGCTTATATAG+AGG + chr5_2:10047621-10047640 Msa0756040:CDS 45.0%
GTAACTGATCTCACTGAGTG+AGG - chr5_2:10047722-10047741 None:intergenic 45.0%
! GGCTGACCGATATTTTCTAG+AGG - chr5_2:10047840-10047859 None:intergenic 45.0%
! GAGAATAACGGAATGTTGGG+CGG + chr5_2:10047935-10047954 Msa0756040:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_2:10048157-10048176 Msa0756040:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr5_2:10048176-10048195 Msa0756040:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5_2:10048320-10048339 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5_2:10048321-10048340 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr5_2:10048322-10048341 None:intergenic 45.0%
CTTAGTGGGATAAGGCTTGA+TGG + chr5_2:10048322-10048341 Msa0756040:intron 45.0%
! GAGCTTAGGGGAACTTGTTT+AGG - chr5_2:10048506-10048525 None:intergenic 45.0%
! GTTAAGAGCTTGTTCTTGCC+AGG - chr5_2:10048532-10048551 None:intergenic 45.0%
!! GACCGGTATTGATCCTATTG+AGG - chr5_2:10048711-10048730 None:intergenic 45.0%
!! TTATGAGGTTTGGTGGAGAC+CGG - chr5_2:10048728-10048747 None:intergenic 45.0%
!! CTGCAAACTTTTCTGGCGAA+GGG + chr5_2:10048869-10048888 Msa0756040:intron 45.0%
GTAGTCGAACTACGCACATA+TGG + chr5_2:10049029-10049048 Msa0756040:intron 45.0%
CATATGGGCATTCTCTGTAG+TGG + chr5_2:10049045-10049064 Msa0756040:intron 45.0%
ATGCTCTTCCTTGTTACTCC+TGG + chr5_2:10049253-10049272 Msa0756040:CDS 45.0%
TCTTCCTTGTTACTCCTGGA+AGG + chr5_2:10049257-10049276 Msa0756040:CDS 45.0%
CTTCCTTGTTACTCCTGGAA+GGG + chr5_2:10049258-10049277 Msa0756040:CDS 45.0%
GTTTGCAAAAGCAGCAACGA+AGG + chr5_2:10049499-10049518 Msa0756040:CDS 45.0%
TTTATTCTCTATGGAGGGGG+TGG + chr5_2:10049982-10050001 Msa0756040:three_prime_UTR 45.0%
TTATTCTCTATGGAGGGGGT+GGG + chr5_2:10049983-10050002 Msa0756040:three_prime_UTR 45.0%
ATAATGCGCCCTATCTAGGT+AGG + chr5_2:10050118-10050137 Msa0756040:three_prime_UTR 45.0%
TAATGCGCCCTATCTAGGTA+GGG + chr5_2:10050119-10050138 Msa0756040:three_prime_UTR 45.0%
TGAACAGCCCTACCTAGATA+GGG - chr5_2:10050129-10050148 None:intergenic 45.0%
ATGAACAGCCCTACCTAGAT+AGG - chr5_2:10050130-10050149 None:intergenic 45.0%
TATCTAGGTAGGGCTGTTCA+TGG + chr5_2:10050129-10050148 Msa0756040:three_prime_UTR 45.0%
CAGGTGAAGCCATTGAAGTT+TGG - chr5_2:10050208-10050227 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTGAAA+TGG + chr5_2:10045553-10045572 Msa0756040:intron 5.0%
CCAGGACTTATCCCACTAAG+TGG - chr5_2:10046163-10046182 None:intergenic 50.0%
CCACTTAGTGGGATAAGTCC+TGG + chr5_2:10046160-10046179 Msa0756040:intron 50.0%
CACCCATTGGAAGAAGTCCA+CGG - chr5_2:10046439-10046458 None:intergenic 50.0%
!! TTCTGCTTAGGAGCACCCAT+TGG - chr5_2:10046452-10046471 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr5_2:10046453-10046472 Msa0756040:CDS 50.0%
TGACTGCAATATGGGGATCC+AGG + chr5_2:10046858-10046877 Msa0756040:CDS 50.0%
AATATGGGGATCCAGGCAGA+AGG + chr5_2:10046865-10046884 Msa0756040:CDS 50.0%
! TGCAAGTTTTGCCTTCTGCC+TGG - chr5_2:10046879-10046898 None:intergenic 50.0%
CAAAGATGGGGATGTTGCGT+TGG + chr5_2:10047991-10048010 Msa0756040:intron 50.0%
!! ATGATAGTGGAAACAGGCGC+AGG + chr5_2:10048094-10048113 Msa0756040:intron 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr5_2:10048182-10048201 Msa0756040:intron 50.0%
ACTAAGTGGGGTCTGCTACA+TGG - chr5_2:10048308-10048327 None:intergenic 50.0%
ATGTAGCAGACCCCACTTAG+TGG + chr5_2:10048307-10048326 Msa0756040:intron 50.0%
TGTAGCAGACCCCACTTAGT+GGG + chr5_2:10048308-10048327 Msa0756040:intron 50.0%
AGACCCCACTTAGTGGGATA+AGG + chr5_2:10048314-10048333 Msa0756040:intron 50.0%
TCTTGCCAGGTGAGAGCTTA+GGG - chr5_2:10048519-10048538 None:intergenic 50.0%
TTCTTGCCAGGTGAGAGCTT+AGG - chr5_2:10048520-10048539 None:intergenic 50.0%
CTGAAGCATATGGTGGCAAG+CGG + chr5_2:10048765-10048784 Msa0756040:CDS 50.0%
GGCAAGCGGCAAATTAGTGA+AGG + chr5_2:10048779-10048798 Msa0756040:CDS 50.0%
CCTTCGCCAGAAAAGTTTGC+AGG - chr5_2:10048871-10048890 None:intergenic 50.0%
!! CCTGCAAACTTTTCTGGCGA+AGG + chr5_2:10048868-10048887 Msa0756040:intron 50.0%
! AATCTTTTGGCCTCCCTTCC+AGG - chr5_2:10049274-10049293 None:intergenic 50.0%
AGCAGCTGCAAAAGCAGTTG+CGG + chr5_2:10049394-10049413 Msa0756040:CDS 50.0%
AACAGCTGAAGCTGAAGCAG+AGG + chr5_2:10049466-10049485 Msa0756040:CDS 50.0%
AGGTAGGGCTGTTCATGGAT+TGG + chr5_2:10050134-10050153 Msa0756040:three_prime_UTR 50.0%
CAGAAGAAGACTGCATCCCG+AGG + chr5_2:10046364-10046383 Msa0756040:five_prime_UTR 55.0%
AGGCCGTGGACTTCTTCCAA+TGG + chr5_2:10046433-10046452 Msa0756040:exon 55.0%
GGCCGTGGACTTCTTCCAAT+GGG + chr5_2:10046434-10046453 Msa0756040:exon 55.0%
!! GAAGAGGCAGCTCTGAAAGC+TGG + chr5_2:10046485-10046504 Msa0756040:CDS 55.0%
GGAGTAGTCAAATACGGGGC+TGG + chr5_2:10046506-10046525 Msa0756040:CDS 55.0%
GAACTATGGCGGTCGAGGTT+GGG - chr5_2:10046946-10046965 None:intergenic 55.0%
TGAACTATGGCGGTCGAGGT+TGG - chr5_2:10046947-10046966 None:intergenic 55.0%
GGCTTAGGAGCTGCAACTTC+TGG - chr5_2:10046977-10046996 None:intergenic 55.0%
GCGGCAATGTCAGAACCCTT+TGG - chr5_2:10047604-10047623 None:intergenic 55.0%
GGGATGTTGCGTTGGATGTG+TGG + chr5_2:10047999-10048018 Msa0756040:intron 55.0%
! ATAGTGGAAACAGGCGCAGG+TGG + chr5_2:10048097-10048116 Msa0756040:intron 55.0%
CTCGGGGACTTCCATTCTTC+TGG + chr5_2:10048433-10048452 Msa0756040:intron 55.0%
AGTTCCCCTAAGCTCTCACC+TGG + chr5_2:10048511-10048530 Msa0756040:intron 55.0%
CTTGCCAGGTGAGAGCTTAG+GGG - chr5_2:10048518-10048537 None:intergenic 55.0%
CCTCCCTTCCAGGAGTAACA+AGG - chr5_2:10049264-10049283 None:intergenic 55.0%
CCTTGTTACTCCTGGAAGGG+AGG + chr5_2:10049261-10049280 Msa0756040:CDS 55.0%
AGCTGCAAAAGCAGTTGCGG+AGG + chr5_2:10049397-10049416 Msa0756040:CDS 55.0%
TGCTGTCTCAGCCTCAGCAA+TGG - chr5_2:10049432-10049451 None:intergenic 55.0%
TGAGGCTGAGACAGCAGCAA+GGG + chr5_2:10049436-10049455 Msa0756040:CDS 55.0%
! GAGGGGTGTGACAGCTCAAG+AGG + chr5_2:10049364-10049383 Msa0756040:CDS 60.0%
GGCAGAAGCTGCCATTGCTG+AGG + chr5_2:10049418-10049437 Msa0756040:CDS 60.0%
CTGAGGCTGAGACAGCAGCA+AGG + chr5_2:10049435-10049454 Msa0756040:CDS 60.0%
CTATGGCGGTCGAGGTTGGG+TGG - chr5_2:10046943-10046962 None:intergenic 65.0%
GGCTGAGACAGCAGCAAGGG+AGG + chr5_2:10049439-10049458 Msa0756040:CDS 65.0%
TGGCGGTCGAGGTTGGGTGG+TGG - chr5_2:10046940-10046959 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10045202 10050234 10045202 ID=Msa0756040;Name=Msa0756040
chr5_2 mRNA 10045202 10050234 10045202 ID=Msa0756040-mRNA-1;Parent=Msa0756040;Name=Msa0756040-mRNA-1;_AED=0.23;_eAED=0.23;_QI=438|1|1|1|0.57|0.37|8|532|294
chr5_2 exon 10045202 10045405 10045202 ID=Msa0756040-mRNA-1:exon:4625;Parent=Msa0756040-mRNA-1
chr5_2 exon 10045703 10045814 10045703 ID=Msa0756040-mRNA-1:exon:4626;Parent=Msa0756040-mRNA-1
chr5_2 exon 10046330 10046601 10046330 ID=Msa0756040-mRNA-1:exon:4627;Parent=Msa0756040-mRNA-1
chr5_2 exon 10046836 10047044 10046836 ID=Msa0756040-mRNA-1:exon:4628;Parent=Msa0756040-mRNA-1
chr5_2 exon 10047558 10047642 10047558 ID=Msa0756040-mRNA-1:exon:4629;Parent=Msa0756040-mRNA-1
chr5_2 exon 10048717 10048800 10048717 ID=Msa0756040-mRNA-1:exon:4630;Parent=Msa0756040-mRNA-1
chr5_2 exon 10049197 10049645 10049197 ID=Msa0756040-mRNA-1:exon:4631;Parent=Msa0756040-mRNA-1
chr5_2 exon 10049795 10050234 10049795 ID=Msa0756040-mRNA-1:exon:4632;Parent=Msa0756040-mRNA-1
chr5_2 five_prime_UTR 10045202 10045405 10045202 ID=Msa0756040-mRNA-1:five_prime_utr;Parent=Msa0756040-mRNA-1
chr5_2 five_prime_UTR 10045703 10045814 10045703 ID=Msa0756040-mRNA-1:five_prime_utr;Parent=Msa0756040-mRNA-1
chr5_2 five_prime_UTR 10046330 10046451 10046330 ID=Msa0756040-mRNA-1:five_prime_utr;Parent=Msa0756040-mRNA-1
chr5_2 CDS 10046452 10046601 10046452 ID=Msa0756040-mRNA-1:cds;Parent=Msa0756040-mRNA-1
chr5_2 CDS 10046836 10047044 10046836 ID=Msa0756040-mRNA-1:cds;Parent=Msa0756040-mRNA-1
chr5_2 CDS 10047558 10047642 10047558 ID=Msa0756040-mRNA-1:cds;Parent=Msa0756040-mRNA-1
chr5_2 CDS 10048717 10048800 10048717 ID=Msa0756040-mRNA-1:cds;Parent=Msa0756040-mRNA-1
chr5_2 CDS 10049197 10049553 10049197 ID=Msa0756040-mRNA-1:cds;Parent=Msa0756040-mRNA-1
chr5_2 three_prime_UTR 10049554 10049645 10049554 ID=Msa0756040-mRNA-1:three_prime_utr;Parent=Msa0756040-mRNA-1
chr5_2 three_prime_UTR 10049795 10050234 10049795 ID=Msa0756040-mRNA-1:three_prime_utr;Parent=Msa0756040-mRNA-1
Gene Sequence

>Msa0756040

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACCATTCTTACAGACCCAGATTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCACCCCCGAAAAATGAAAATAACCACCACCCAACCTCGACCGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTTTCAGTTTCTGGTGGAACATCTACTTCCAAAGAACAAATATCAAGATTGGACAGCCTTATATTCGACTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTGCCGCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCATAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCCGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGCCAACATCCTTTCAAAATCTCAAATTGATGTTGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTAGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCAAGGGAGGCTGAAACAGCTGAAGCTGAAGCAGAGGCTGCACGTGTGTTTGCAAAAGCAGCAACGAAGGCACTAAAATGCAGAAGACTTAATATTTGGTAA
Protein sequence

>Msa0756040

MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGGTSTSKEQISRLDSLIFDSIVKLKEPKGSDIAAIAAYIEDQYRSPPNLIKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDANILSKSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAATKALKCRRLNIW*