Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714420 | XP_003611653.1 | 96.667 | 600 | 20 | 0 | 29 | 628 | 1 | 600 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714420 | sp|O82333|GH31_ARATH | 74.959 | 603 | 134 | 4 | 29 | 628 | 1 | 589 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714420 | G7K574 | 96.667 | 600 | 20 | 0 | 29 | 628 | 1 | 600 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714420 | Msa0835780 | 0.805460 | 1.320459e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714420 | MtrunA17_Chr5g0401641 | 96.667 | 600 | 20 | 0 | 29 | 628 | 1 | 600 | 0.0 | 1201 |
| Msa0714420 | MtrunA17_Chr5g0421331 | 77.741 | 602 | 118 | 4 | 29 | 628 | 1 | 588 | 0.0 | 959 |
| Msa0714420 | MtrunA17_Chr8g0361551 | 63.481 | 586 | 203 | 3 | 52 | 628 | 18 | 601 | 0.0 | 788 |
| Msa0714420 | MtrunA17_Chr2g0318991 | 60.199 | 603 | 225 | 4 | 40 | 628 | 2 | 603 | 0.0 | 759 |
| Msa0714420 | MtrunA17_Chr5g0401631 | 89.203 | 389 | 33 | 1 | 238 | 626 | 1 | 380 | 0.0 | 730 |
| Msa0714420 | MtrunA17_Chr4g0023301 | 59.172 | 507 | 200 | 4 | 125 | 628 | 1 | 503 | 0.0 | 641 |
| Msa0714420 | MtrunA17_Chr1g0195771 | 53.425 | 584 | 262 | 5 | 51 | 624 | 56 | 639 | 0.0 | 635 |
| Msa0714420 | MtrunA17_Chr7g0275471 | 39.587 | 581 | 340 | 6 | 43 | 619 | 5 | 578 | 1.05e-145 | 434 |
| Msa0714420 | MtrunA17_Chr8g0347381 | 37.629 | 582 | 344 | 8 | 43 | 618 | 5 | 573 | 4.21e-142 | 425 |
| Msa0714420 | MtrunA17_Chr8g0347391 | 37.457 | 582 | 345 | 8 | 43 | 618 | 12 | 580 | 4.98e-137 | 412 |
| Msa0714420 | MtrunA17_Chr8g0347421 | 37.610 | 569 | 338 | 6 | 48 | 611 | 10 | 566 | 6.77e-137 | 412 |
| Msa0714420 | MtrunA17_Chr8g0347431 | 41.500 | 400 | 218 | 5 | 224 | 618 | 11 | 399 | 3.26e-109 | 334 |
| Msa0714420 | MtrunA17_Chr5g0401621 | 90.341 | 176 | 17 | 0 | 29 | 204 | 1 | 176 | 6.64e-108 | 323 |
| Msa0714420 | MtrunA17_Chr7g0259291 | 30.783 | 575 | 366 | 13 | 52 | 607 | 8 | 569 | 9.73e-80 | 263 |
| Msa0714420 | MtrunA17_Chr4g0022401 | 31.592 | 402 | 263 | 3 | 50 | 439 | 20 | 421 | 2.84e-69 | 231 |
| Msa0714420 | MtrunA17_Chr8g0352391 | 32.000 | 325 | 163 | 7 | 299 | 619 | 1 | 271 | 1.15e-49 | 174 |
| Msa0714420 | MtrunA17_Chr1g0169871 | 42.857 | 168 | 96 | 0 | 355 | 522 | 138 | 305 | 2.21e-42 | 156 |
| Msa0714420 | MtrunA17_Chr4g0022391 | 38.506 | 174 | 100 | 4 | 439 | 611 | 11 | 178 | 7.14e-38 | 139 |
| Msa0714420 | MtrunA17_Chr7g0259401 | 30.824 | 279 | 155 | 7 | 173 | 446 | 4 | 249 | 2.46e-32 | 125 |
| Msa0714420 | MtrunA17_Chr4g0023291 | 64.368 | 87 | 31 | 0 | 51 | 137 | 32 | 118 | 9.59e-31 | 116 |
| Msa0714420 | MtrunA17_Chr8g0347441 | 46.535 | 101 | 54 | 0 | 48 | 148 | 10 | 110 | 7.16e-24 | 97.4 |
| Msa0714420 | MtrunA17_Chr8g0352401 | 39.604 | 101 | 61 | 0 | 48 | 148 | 1 | 101 | 1.34e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714420 | AT2G14960.1 | 74.959 | 603 | 134 | 4 | 29 | 628 | 1 | 589 | 0.0 | 943 |
| Msa0714420 | AT2G23170.1 | 75.372 | 605 | 134 | 6 | 29 | 628 | 1 | 595 | 0.0 | 931 |
| Msa0714420 | AT4G37390.1 | 74.257 | 606 | 147 | 4 | 29 | 628 | 1 | 603 | 0.0 | 926 |
| Msa0714420 | AT1G59500.1 | 70.050 | 601 | 173 | 4 | 29 | 627 | 1 | 596 | 0.0 | 853 |
| Msa0714420 | AT5G54510.1 | 64.094 | 596 | 202 | 5 | 42 | 628 | 16 | 608 | 0.0 | 800 |
| Msa0714420 | AT4G27260.1 | 64.034 | 595 | 204 | 4 | 42 | 628 | 16 | 608 | 0.0 | 800 |
| Msa0714420 | AT1G28130.1 | 53.488 | 602 | 260 | 7 | 42 | 624 | 4 | 604 | 0.0 | 661 |
| Msa0714420 | AT2G47750.1 | 50.000 | 584 | 277 | 8 | 49 | 624 | 9 | 585 | 0.0 | 589 |
| Msa0714420 | AT1G23160.1 | 47.945 | 584 | 285 | 6 | 41 | 616 | 5 | 577 | 0.0 | 561 |
| Msa0714420 | AT5G13320.3 | 46.573 | 569 | 288 | 4 | 55 | 616 | 15 | 574 | 0.0 | 545 |
| Msa0714420 | AT5G13320.2 | 46.573 | 569 | 288 | 4 | 55 | 616 | 30 | 589 | 0.0 | 545 |
| Msa0714420 | AT5G13320.1 | 46.573 | 569 | 288 | 4 | 55 | 616 | 15 | 574 | 0.0 | 545 |
| Msa0714420 | AT5G13370.1 | 46.620 | 577 | 300 | 6 | 51 | 622 | 13 | 586 | 0.0 | 537 |
| Msa0714420 | AT5G13360.3 | 46.296 | 594 | 305 | 6 | 35 | 622 | 78 | 663 | 0.0 | 530 |
| Msa0714420 | AT5G13360.1 | 46.886 | 578 | 296 | 5 | 51 | 622 | 13 | 585 | 0.0 | 528 |
| Msa0714420 | AT5G13360.2 | 46.886 | 578 | 296 | 5 | 51 | 622 | 13 | 585 | 0.0 | 528 |
| Msa0714420 | AT1G28130.2 | 55.315 | 461 | 189 | 5 | 181 | 624 | 1 | 461 | 0.0 | 521 |
| Msa0714420 | AT5G13380.1 | 46.194 | 578 | 300 | 5 | 51 | 622 | 43 | 615 | 1.80e-177 | 518 |
| Msa0714420 | AT1G48660.2 | 44.041 | 579 | 311 | 5 | 47 | 620 | 2 | 572 | 9.57e-176 | 511 |
| Msa0714420 | AT1G48660.1 | 44.194 | 577 | 310 | 5 | 47 | 620 | 2 | 569 | 5.86e-175 | 509 |
| Msa0714420 | AT5G13350.1 | 44.483 | 580 | 308 | 7 | 51 | 622 | 13 | 586 | 2.47e-174 | 508 |
| Msa0714420 | AT5G13350.2 | 44.483 | 580 | 308 | 7 | 51 | 622 | 13 | 586 | 2.47e-174 | 508 |
| Msa0714420 | AT5G51470.1 | 43.915 | 567 | 306 | 4 | 53 | 616 | 14 | 571 | 4.64e-168 | 492 |
| Msa0714420 | AT1G48670.1 | 41.053 | 570 | 273 | 6 | 55 | 620 | 11 | 521 | 4.68e-148 | 439 |
| Msa0714420 | AT2G46370.1 | 38.937 | 583 | 338 | 8 | 43 | 619 | 5 | 575 | 1.68e-140 | 421 |
| Msa0714420 | AT2G46370.2 | 38.937 | 583 | 338 | 8 | 43 | 619 | 5 | 575 | 1.68e-140 | 421 |
| Msa0714420 | AT2G46370.4 | 38.937 | 583 | 338 | 8 | 43 | 619 | 16 | 586 | 3.35e-140 | 421 |
| Msa0714420 | AT5G51470.2 | 42.916 | 487 | 267 | 3 | 133 | 616 | 3 | 481 | 2.07e-138 | 413 |
| Msa0714420 | AT1G48670.2 | 46.635 | 416 | 212 | 3 | 208 | 620 | 2 | 410 | 1.24e-131 | 393 |
| Msa0714420 | AT2G46370.3 | 38.386 | 508 | 297 | 6 | 116 | 619 | 1 | 496 | 1.52e-122 | 372 |
| Msa0714420 | AT4G03400.2 | 33.105 | 583 | 369 | 7 | 45 | 611 | 5 | 582 | 3.18e-118 | 364 |
| Msa0714420 | AT4G03400.1 | 33.105 | 583 | 369 | 7 | 45 | 611 | 5 | 582 | 3.18e-118 | 364 |
| Msa0714420 | AT1G48690.1 | 39.378 | 193 | 113 | 2 | 47 | 239 | 2 | 190 | 9.73e-39 | 141 |
Find 138 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTAAGTATGTGTAATT+TGG | 0.150925 | 5_1:-7056999 | Msa0714420:three_prime_UTR |
| GGGATCCGGTTTAAGTATTT+TGG | 0.152591 | 5_1:+7058175 | None:intergenic |
| TTGAACTGAGTCAGTGTTTA+TGG | 0.165358 | 5_1:+7059155 | None:intergenic |
| GCTTCATCTGAATGTTATTT+TGG | 0.191327 | 5_1:-7057978 | Msa0714420:CDS |
| CTGGACATTATGTTATCTAT+TGG | 0.236480 | 5_1:-7057536 | Msa0714420:CDS |
| CTTATAATCACAACTTATTC+AGG | 0.253897 | 5_1:-7057783 | Msa0714420:CDS |
| ATCCTTCAACGACGTCGTTC+TGG | 0.258570 | 5_1:+7057204 | None:intergenic |
| TTAGGTTCCTTCAGCTCAAC+TGG | 0.281934 | 5_1:-7058274 | Msa0714420:CDS |
| CAACAGATATGTTCCTGATT+TGG | 0.286352 | 5_1:-7058570 | Msa0714420:intron |
| GAGTCAAGAAGTTCCATTAT+AGG | 0.293990 | 5_1:+7057273 | None:intergenic |
| TGTTGAATCTGAAATCCTTT+TGG | 0.297924 | 5_1:-7059241 | Msa0714420:CDS |
| TGATTAAGTATGTGTAATTT+GGG | 0.299108 | 5_1:-7056998 | Msa0714420:three_prime_UTR |
| TGGACATTATGTTATCTATT+GGG | 0.303558 | 5_1:-7057535 | Msa0714420:CDS |
| TGTAACAAAATTAGCGAGTT+CGG | 0.326262 | 5_1:+7058154 | None:intergenic |
| CCGGGCTTCTCCGAGCCATT+AGG | 0.338420 | 5_1:-7058292 | Msa0714420:CDS |
| TTTGTGTTAGGCCAGATTCT+TGG | 0.342221 | 5_1:+7058095 | None:intergenic |
| GGACTTGTTAACACATTGTA+AGG | 0.342995 | 5_1:+7058422 | None:intergenic |
| GTAACCCATGTTTGGCATAA+TGG | 0.346043 | 5_1:+7057911 | None:intergenic |
| GACATGCACTGTTTGATAGA+AGG | 0.351174 | 5_1:+7058197 | None:intergenic |
| GTAACAAAATTAGCGAGTTC+GGG | 0.351298 | 5_1:+7058155 | None:intergenic |
| TTGTGTTAGGCCAGATTCTT+GGG | 0.352673 | 5_1:+7058096 | None:intergenic |
| CGTGAGTTTCACTCCTATAA+TGG | 0.353049 | 5_1:-7057286 | Msa0714420:CDS |
| GAGTCACGTGAGAGGGTTAT+AGG | 0.358227 | 5_1:+7057858 | None:intergenic |
| GAATCAATGTTGTTTGGTTA+TGG | 0.360826 | 5_1:-7057466 | Msa0714420:CDS |
| AAGAATGTTCAGGAGACAAT+TGG | 0.367565 | 5_1:-7058130 | Msa0714420:CDS |
| TTTGTTACAAAAGAATGTTC+AGG | 0.371323 | 5_1:-7058140 | Msa0714420:CDS |
| TTGAAACGGTTTGGACTTAA+CGG | 0.372336 | 5_1:-7059084 | Msa0714420:CDS |
| TTCACCACACGTATCTCTAA+TGG | 0.376428 | 5_1:+7057387 | None:intergenic |
| CGAGATCTTTATAATAATAA+TGG | 0.378188 | 5_1:-7057143 | Msa0714420:three_prime_UTR |
| TGGCACGTTTGAGGAACTAA+TGG | 0.378498 | 5_1:-7057361 | Msa0714420:CDS |
| TTATCAAAGCCGAAACAAAA+AGG | 0.380489 | 5_1:+7056904 | None:intergenic |
| GCTGATACAAAATCCATTCC+TGG | 0.383064 | 5_1:-7057555 | Msa0714420:CDS |
| AATTCAAAGTAACCCATGTT+TGG | 0.385809 | 5_1:+7057903 | None:intergenic |
| GAACTTCATGGCGCATGATT+AGG | 0.390929 | 5_1:+7058339 | None:intergenic |
| TTAGTCCTTCTCTACCTCAT+TGG | 0.392898 | 5_1:-7057230 | Msa0714420:CDS |
| GGGTTCCTGTTTCAATGTCA+TGG | 0.396046 | 5_1:+7058240 | None:intergenic |
| AAATGAAGCTATCCTTTGTC+TGG | 0.396144 | 5_1:-7058399 | Msa0714420:CDS |
| ACTTCATTAGGTTCTGTCAT+TGG | 0.400294 | 5_1:+7057942 | None:intergenic |
| CTCCGACTCGAAGAACTTCA+TGG | 0.400753 | 5_1:+7058327 | None:intergenic |
| ACTGAGTACTTGAAACGGTT+TGG | 0.400987 | 5_1:-7059093 | Msa0714420:CDS |
| CGCCTCACAAATTTGAATTG+AGG | 0.403765 | 5_1:+7057702 | None:intergenic |
| ATAGGTGATAACGGCGACTT+TGG | 0.405359 | 5_1:+7059035 | None:intergenic |
| GCATACATTGTACATGGCTT+TGG | 0.406768 | 5_1:+7057999 | None:intergenic |
| AGAGTAGCTGATAATTCAAT+TGG | 0.409619 | 5_1:-7057411 | Msa0714420:CDS |
| TGAATTGAGGATCGGAGTTA+TGG | 0.415966 | 5_1:+7057715 | None:intergenic |
| ACCTCAAGATACTTTGTGTT+AGG | 0.417991 | 5_1:+7058083 | None:intergenic |
| CATGTCCAAAATACTTAAAC+CGG | 0.418636 | 5_1:-7058180 | Msa0714420:CDS |
| TAGGTTCTGTCATTGGCTTA+AGG | 0.419185 | 5_1:+7057949 | None:intergenic |
| TCAGCAAGGTCTACTAGCTT+TGG | 0.421816 | 5_1:+7057831 | None:intergenic |
| TTGTAGTAAGCTGTTAGAAC+TGG | 0.422702 | 5_1:+7058476 | None:intergenic |
| AGACAAAGGATAGCTTCATT+TGG | 0.426976 | 5_1:+7058401 | None:intergenic |
| ATGGTGTAAGACACTTCATT+AGG | 0.427282 | 5_1:+7057930 | None:intergenic |
| GCCTACTATTCATCAAGAAA+TGG | 0.427538 | 5_1:-7058764 | Msa0714420:CDS |
| AACGTATAATCCCAAGAATC+TGG | 0.429037 | 5_1:-7058106 | Msa0714420:CDS |
| CTTTCTTCATTCTTCTCCAA+TGG | 0.432249 | 5_1:-7059265 | Msa0714420:CDS |
| TCCATTTCTTGATGAATAGT+AGG | 0.437851 | 5_1:+7058763 | None:intergenic |
| TATCTTGAGGTTATTGTCAC+TGG | 0.443122 | 5_1:-7058071 | Msa0714420:CDS |
| ATGTATACTCAGATGCTTTG+TGG | 0.445009 | 5_1:-7058362 | Msa0714420:CDS |
| AGTGTTGAATCAATGTTGTT+TGG | 0.445864 | 5_1:-7057472 | Msa0714420:CDS |
| TGATTCAACACTTCTTCTGT+TGG | 0.447138 | 5_1:+7057483 | None:intergenic |
| TTAGTCCATGACATTGAAAC+AGG | 0.449357 | 5_1:-7058245 | Msa0714420:CDS |
| TTAGCAATGCGTTGAATGTC+AGG | 0.450086 | 5_1:+7059000 | None:intergenic |
| GACCTTGCTGATGTTGAAAT+CGG | 0.450405 | 5_1:-7057819 | Msa0714420:CDS |
| CTGGTCAGAAACTCTGAGAT+TGG | 0.451558 | 5_1:+7058946 | None:intergenic |
| TTCAACACTTCTTCTGTTGG+AGG | 0.453608 | 5_1:+7057486 | None:intergenic |
| AAATTAGCGAGTTCGGGATC+CGG | 0.454702 | 5_1:+7058161 | None:intergenic |
| ATTTCAGATTCAACAGCCAT+TGG | 0.466156 | 5_1:+7059249 | None:intergenic |
| CTCCAGAACGACGTCGTTGA+AGG | 0.467415 | 5_1:-7057206 | Msa0714420:exon |
| AAAATGGGAAATTTGCTAGA+TGG | 0.469709 | 5_1:-7057097 | Msa0714420:three_prime_UTR |
| CTTTGGATTTGAAAGTTTCA+CGG | 0.476580 | 5_1:+7059052 | None:intergenic |
| AGAATGTTCAGGAGACAATT+GGG | 0.479539 | 5_1:-7058129 | Msa0714420:CDS |
| AACACATTGTAAGGGTCAAA+TGG | 0.480939 | 5_1:+7058431 | None:intergenic |
| GGTGATATTCTTCAAGTCAC+AGG | 0.486432 | 5_1:-7057741 | Msa0714420:CDS |
| GGTTATTGTCACTGGTGCTA+TGG | 0.489560 | 5_1:-7058063 | Msa0714420:CDS |
| TAATGGAACTTCTTGACTCT+AGG | 0.502283 | 5_1:-7057269 | Msa0714420:CDS |
| GTCAGGTGAAAGATCTTCAT+AGG | 0.502586 | 5_1:+7059017 | None:intergenic |
| TGCAGTTCAGGAACATCAGC+TGG | 0.503724 | 5_1:-7058802 | Msa0714420:intron |
| GGTTACCACTGTAATAATCA+AGG | 0.506382 | 5_1:+7058024 | None:intergenic |
| ACAATGAAACAGAAAGAAAG+AGG | 0.507518 | 5_1:+7059297 | None:intergenic |
| CGTGTTGTTGAGTATCGATT+CGG | 0.508782 | 5_1:-7057673 | Msa0714420:CDS |
| GGTCTTTGCCGTTACAGAGT+TGG | 0.511203 | 5_1:-7057762 | Msa0714420:CDS |
| TTAATCAGTATAAAGTTCCT+AGG | 0.514790 | 5_1:-7057311 | Msa0714420:CDS |
| CAGAAGAAGGTGGTTCCAAA+AGG | 0.514827 | 5_1:+7059226 | None:intergenic |
| GCAAGGTCTACTAGCTTTGG+AGG | 0.517582 | 5_1:+7057834 | None:intergenic |
| CACAAATTTGAATTGAGGAT+CGG | 0.520573 | 5_1:+7057707 | None:intergenic |
| TTCGGATAAAACAGACGAAT+CGG | 0.522401 | 5_1:-7057655 | Msa0714420:CDS |
| AATGGAACTTCTTGACTCTA+GGG | 0.522711 | 5_1:-7057268 | Msa0714420:CDS |
| TTTGAAAGTTTCACGGTCAG+TGG | 0.533276 | 5_1:+7059059 | None:intergenic |
| CCTAATGGCTCGGAGAAGCC+CGG | 0.537712 | 5_1:+7058292 | None:intergenic |
| GTTGAGCTGAAGGAACCTAA+TGG | 0.538471 | 5_1:+7058277 | None:intergenic |
| AAGAATGCATGAAGGGTGAA+GGG | 0.541014 | 5_1:+7059343 | None:intergenic |
| TATGTTCCTGATTTGGACAA+AGG | 0.547413 | 5_1:-7058563 | Msa0714420:CDS |
| GATAACATAATGTCCAGGAA+TGG | 0.549039 | 5_1:+7057542 | None:intergenic |
| ACAACTTACTGGTTCATCAC+TGG | 0.553006 | 5_1:+7058709 | None:intergenic |
| CAGAAACTGAGTACTTGAAA+CGG | 0.555445 | 5_1:-7059098 | Msa0714420:CDS |
| TTCTTCTGTTGGAGGATCAG+AGG | 0.557607 | 5_1:+7057494 | None:intergenic |
| GATGAAGCATACATTGTACA+TGG | 0.560482 | 5_1:+7057993 | None:intergenic |
| GAAGAATGCATGAAGGGTGA+AGG | 0.562101 | 5_1:+7059342 | None:intergenic |
| TAGGTTCCTTCAGCTCAACT+GGG | 0.562924 | 5_1:-7058273 | Msa0714420:CDS |
| AAGATCTTCATAGGTGATAA+CGG | 0.566927 | 5_1:+7059026 | None:intergenic |
| CAATCTCAGAGTTTCTGACC+AGG | 0.571947 | 5_1:-7058945 | Msa0714420:intron |
| ATTCAGCCCAGTTGAGCTGA+AGG | 0.574788 | 5_1:+7058267 | None:intergenic |
| GACATTCAACGCATTGCTAA+CGG | 0.575369 | 5_1:-7058997 | Msa0714420:CDS |
| GGACGTGCCACTAACCCACT+TGG | 0.582325 | 5_1:+7058497 | None:intergenic |
| CAATAGATAACATAATGTCC+AGG | 0.583043 | 5_1:+7057537 | None:intergenic |
| AATGAATGAAGAATGCATGA+AGG | 0.583694 | 5_1:+7059335 | None:intergenic |
| TGGAGGTGAGTCACGTGAGA+GGG | 0.584345 | 5_1:+7057851 | None:intergenic |
| AAACTCTGAGATTGGATGAG+AGG | 0.584597 | 5_1:+7058954 | None:intergenic |
| CGCCATGAAGTTCTTCGAGT+CGG | 0.584929 | 5_1:-7058329 | Msa0714420:CDS |
| ACATTGTACATGGCTTTGGT+AGG | 0.586212 | 5_1:+7058003 | None:intergenic |
| GGAGTCCAATGAGGTAGAGA+AGG | 0.586779 | 5_1:+7057225 | None:intergenic |
| CCTACCCTTGATTATTACAG+TGG | 0.588702 | 5_1:-7058029 | Msa0714420:CDS |
| TTACACCATTATGCCAAACA+TGG | 0.590839 | 5_1:-7057916 | Msa0714420:CDS |
| GACTTGTTAACACATTGTAA+GGG | 0.591653 | 5_1:+7058423 | None:intergenic |
| TTGAATTCTGTTTATAGACA+AGG | 0.592330 | 5_1:-7057435 | Msa0714420:CDS |
| CGTCGTTCTGGAGTCCAATG+AGG | 0.593147 | 5_1:+7057216 | None:intergenic |
| GGAACTTCTTGACTCTAGGG+TGG | 0.594581 | 5_1:-7057265 | Msa0714420:CDS |
| GGTTCATCACTGGCATGAGT+AGG | 0.600133 | 5_1:+7058719 | None:intergenic |
| GCTGAAGGAACCTAATGGCT+CGG | 0.602143 | 5_1:+7058282 | None:intergenic |
| ATCCTCAATTCAAATTTGTG+AGG | 0.604210 | 5_1:-7057704 | Msa0714420:CDS |
| TTCCGATTTCAACATCAGCA+AGG | 0.605113 | 5_1:+7057817 | None:intergenic |
| TACACCATTATGCCAAACAT+GGG | 0.605854 | 5_1:-7057915 | Msa0714420:CDS |
| ATTGGATGAGAGGACAAGAT+CGG | 0.606719 | 5_1:+7058964 | None:intergenic |
| GAATATCACCAACTCTGTAA+CGG | 0.607477 | 5_1:+7057754 | None:intergenic |
| GCCTAACACAAAGTATCTTG+AGG | 0.610993 | 5_1:-7058084 | Msa0714420:CDS |
| GTTACCACTGTAATAATCAA+GGG | 0.613578 | 5_1:+7058025 | None:intergenic |
| TTGGAGGTGAGTCACGTGAG+AGG | 0.626134 | 5_1:+7057850 | None:intergenic |
| CCACTGTAATAATCAAGGGT+AGG | 0.627514 | 5_1:+7058029 | None:intergenic |
| AGAATGCATGAAGGGTGAAG+GGG | 0.628713 | 5_1:+7059344 | None:intergenic |
| TTTGAAATGAATCCAGACAA+AGG | 0.634217 | 5_1:+7058387 | None:intergenic |
| GGAGTGAAACTCACGCACCT+AGG | 0.634419 | 5_1:+7057294 | None:intergenic |
| ATGAATGAAGAATGCATGAA+GGG | 0.639433 | 5_1:+7059336 | None:intergenic |
| ATGGATTATGCAATATCGCG+TGG | 0.656625 | 5_1:-7057342 | Msa0714420:CDS |
| TGAAGTTCTTCGAGTCGGAG+CGG | 0.662649 | 5_1:-7058324 | Msa0714420:CDS |
| GATTAAGTATGTGTAATTTG+GGG | 0.683020 | 5_1:-7056997 | Msa0714420:three_prime_UTR |
| ATAGGTGATGAATCATCATG+TGG | 0.689225 | 5_1:+7057876 | None:intergenic |
| GGCTGTACAATAACTGACGA+CGG | 0.700187 | 5_1:+7058740 | None:intergenic |
| TGGACCATTAGAGATACGTG+TGG | 0.736597 | 5_1:-7057391 | Msa0714420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGTTTGTTAATTAATTA+CGG | - | chr5_1:7057637-7057656 | Msa0714420:CDS | 10.0% |
| !! | AATAATAATAAAAAGCAAAA+TGG | - | chr5_1:7059132-7059151 | Msa0714420:CDS | 10.0% |
| !! | ATAATAATAAAAAGCAAAAT+GGG | - | chr5_1:7059133-7059152 | Msa0714420:CDS | 10.0% |
| !!! | TTTATTTTTCCTTTTTGTTT+CGG | - | chr5_1:7059332-7059351 | Msa0714420:CDS | 15.0% |
| !! | TATTCATTACAATAAACTCA+CGG | + | chr5_1:7057586-7057605 | None:intergenic | 20.0% |
| !! | TTAATTACGGTTTCTTAATT+TGG | - | chr5_1:7057650-7057669 | Msa0714420:CDS | 20.0% |
| !! | CGAGATCTTTATAATAATAA+TGG | - | chr5_1:7059102-7059121 | Msa0714420:CDS | 20.0% |
| !! | ATGATTAAGTATGTGTAATT+TGG | - | chr5_1:7059246-7059265 | Msa0714420:CDS | 20.0% |
| !! | TGATTAAGTATGTGTAATTT+GGG | - | chr5_1:7059247-7059266 | Msa0714420:CDS | 20.0% |
| !! | AACATTCAAAAGCAAAAATA+GGG | + | chr5_1:7059312-7059331 | None:intergenic | 20.0% |
| !! | AAACATTCAAAAGCAAAAAT+AGG | + | chr5_1:7059313-7059332 | None:intergenic | 20.0% |
| ! | TATATTGATGAATATGAACC+TGG | + | chr5_1:7057321-7057340 | None:intergenic | 25.0% |
| ! | ATTCATTACAATAAACTCAC+GGG | + | chr5_1:7057585-7057604 | None:intergenic | 25.0% |
| ! | TTTGTTACAAAAGAATGTTC+AGG | - | chr5_1:7058105-7058124 | Msa0714420:CDS | 25.0% |
| ! | CTTATAATCACAACTTATTC+AGG | - | chr5_1:7058462-7058481 | Msa0714420:CDS | 25.0% |
| ! | TGGACATTATGTTATCTATT+GGG | - | chr5_1:7058710-7058729 | Msa0714420:intron | 25.0% |
| ! | TTGAATTCTGTTTATAGACA+AGG | - | chr5_1:7058810-7058829 | Msa0714420:intron | 25.0% |
| ! | TTAATCAGTATAAAGTTCCT+AGG | - | chr5_1:7058934-7058953 | Msa0714420:intron | 25.0% |
| ! | GATTAAGTATGTGTAATTTG+GGG | - | chr5_1:7059248-7059267 | Msa0714420:CDS | 25.0% |
| ATGAATGAAGAATGCATGAA+GGG | + | chr5_1:7056912-7056931 | None:intergenic | 30.0% | |
| AATGAATGAAGAATGCATGA+AGG | + | chr5_1:7056913-7056932 | None:intergenic | 30.0% | |
| ACAATGAAACAGAAAGAAAG+AGG | + | chr5_1:7056951-7056970 | None:intergenic | 30.0% | |
| !! | TGTTGAATCTGAAATCCTTT+TGG | - | chr5_1:7057004-7057023 | Msa0714420:three_prime_UTR | 30.0% |
| CTTTGGATTTGAAAGTTTCA+CGG | + | chr5_1:7057196-7057215 | None:intergenic | 30.0% | |
| AAGATCTTCATAGGTGATAA+CGG | + | chr5_1:7057222-7057241 | None:intergenic | 30.0% | |
| TCCATTTCTTGATGAATAGT+AGG | + | chr5_1:7057485-7057504 | None:intergenic | 30.0% | |
| TTACAACAGAAACAACTTAC+TGG | + | chr5_1:7057550-7057569 | None:intergenic | 30.0% | |
| !! | GACTTGTTAACACATTGTAA+GGG | + | chr5_1:7057825-7057844 | None:intergenic | 30.0% |
| ! | TTTGAAATGAATCCAGACAA+AGG | + | chr5_1:7057861-7057880 | None:intergenic | 30.0% |
| !!! | ATCAGTGATTTTTGGGTTTA+GGG | + | chr5_1:7058028-7058047 | None:intergenic | 30.0% |
| ! | TAGAAGGATCAGTGATTTTT+GGG | + | chr5_1:7058035-7058054 | None:intergenic | 30.0% |
| ! | ATAGAAGGATCAGTGATTTT+TGG | + | chr5_1:7058036-7058055 | None:intergenic | 30.0% |
| CATGTCCAAAATACTTAAAC+CGG | - | chr5_1:7058065-7058084 | Msa0714420:CDS | 30.0% | |
| TGTAACAAAATTAGCGAGTT+CGG | + | chr5_1:7058094-7058113 | None:intergenic | 30.0% | |
| GTTACCACTGTAATAATCAA+GGG | + | chr5_1:7058223-7058242 | None:intergenic | 30.0% | |
| !! | GCTTCATCTGAATGTTATTT+TGG | - | chr5_1:7058267-7058286 | Msa0714420:CDS | 30.0% |
| AATTCAAAGTAACCCATGTT+TGG | + | chr5_1:7058345-7058364 | None:intergenic | 30.0% | |
| CACAAATTTGAATTGAGGAT+CGG | + | chr5_1:7058541-7058560 | None:intergenic | 30.0% | |
| ATCCTCAATTCAAATTTGTG+AGG | - | chr5_1:7058541-7058560 | Msa0714420:CDS | 30.0% | |
| CAATAGATAACATAATGTCC+AGG | + | chr5_1:7058711-7058730 | None:intergenic | 30.0% | |
| CTGGACATTATGTTATCTAT+TGG | - | chr5_1:7058709-7058728 | Msa0714420:intron | 30.0% | |
| ! | AGTGTTGAATCAATGTTGTT+TGG | - | chr5_1:7058773-7058792 | Msa0714420:CDS | 30.0% |
| ! | GAATCAATGTTGTTTGGTTA+TGG | - | chr5_1:7058779-7058798 | Msa0714420:CDS | 30.0% |
| AGAGTAGCTGATAATTCAAT+TGG | - | chr5_1:7058834-7058853 | Msa0714420:intron | 30.0% | |
| !! | AAAATGGGAAATTTGCTAGA+TGG | - | chr5_1:7059148-7059167 | Msa0714420:CDS | 30.0% |
| TTATCAAAGCCGAAACAAAA+AGG | + | chr5_1:7059344-7059363 | None:intergenic | 30.0% | |
| CTTTCTTCATTCTTCTCCAA+TGG | - | chr5_1:7056980-7056999 | Msa0714420:three_prime_UTR | 35.0% | |
| ATTTCAGATTCAACAGCCAT+TGG | + | chr5_1:7056999-7057018 | None:intergenic | 35.0% | |
| ! | TTTTCATCAACAGAAGAAGG+TGG | + | chr5_1:7057032-7057051 | None:intergenic | 35.0% |
| ! | CTCTTTTCATCAACAGAAGA+AGG | + | chr5_1:7057035-7057054 | None:intergenic | 35.0% |
| TTGAACTGAGTCAGTGTTTA+TGG | + | chr5_1:7057093-7057112 | None:intergenic | 35.0% | |
| CAGAAACTGAGTACTTGAAA+CGG | - | chr5_1:7057147-7057166 | Msa0714420:three_prime_UTR | 35.0% | |
| ! | TTGAAACGGTTTGGACTTAA+CGG | - | chr5_1:7057161-7057180 | Msa0714420:three_prime_UTR | 35.0% |
| GTGAATGAAAATTGCAGTTC+AGG | - | chr5_1:7057431-7057450 | Msa0714420:CDS | 35.0% | |
| GCCTACTATTCATCAAGAAA+TGG | - | chr5_1:7057481-7057500 | Msa0714420:CDS | 35.0% | |
| CAACAGATATGTTCCTGATT+TGG | - | chr5_1:7057675-7057694 | Msa0714420:CDS | 35.0% | |
| !! | TATGTTCCTGATTTGGACAA+AGG | - | chr5_1:7057682-7057701 | Msa0714420:CDS | 35.0% |
| CAGAAACAAAAACTCCAAGT+GGG | - | chr5_1:7057734-7057753 | Msa0714420:CDS | 35.0% | |
| TTGTAGTAAGCTGTTAGAAC+TGG | + | chr5_1:7057772-7057791 | None:intergenic | 35.0% | |
| AACACATTGTAAGGGTCAAA+TGG | + | chr5_1:7057817-7057836 | None:intergenic | 35.0% | |
| !! | GGACTTGTTAACACATTGTA+AGG | + | chr5_1:7057826-7057845 | None:intergenic | 35.0% |
| AGACAAAGGATAGCTTCATT+TGG | + | chr5_1:7057847-7057866 | None:intergenic | 35.0% | |
| AAATGAAGCTATCCTTTGTC+TGG | - | chr5_1:7057846-7057865 | Msa0714420:CDS | 35.0% | |
| ATGTATACTCAGATGCTTTG+TGG | - | chr5_1:7057883-7057902 | Msa0714420:CDS | 35.0% | |
| TTAGTCCATGACATTGAAAC+AGG | - | chr5_1:7058000-7058019 | Msa0714420:CDS | 35.0% | |
| !!! | GATCAGTGATTTTTGGGTTT+AGG | + | chr5_1:7058029-7058048 | None:intergenic | 35.0% |
| GTAACAAAATTAGCGAGTTC+GGG | + | chr5_1:7058093-7058112 | None:intergenic | 35.0% | |
| AAGAATGTTCAGGAGACAAT+TGG | - | chr5_1:7058115-7058134 | Msa0714420:CDS | 35.0% | |
| AGAATGTTCAGGAGACAATT+GGG | - | chr5_1:7058116-7058135 | Msa0714420:CDS | 35.0% | |
| AACGTATAATCCCAAGAATC+TGG | - | chr5_1:7058139-7058158 | Msa0714420:CDS | 35.0% | |
| ACCTCAAGATACTTTGTGTT+AGG | + | chr5_1:7058165-7058184 | None:intergenic | 35.0% | |
| TATCTTGAGGTTATTGTCAC+TGG | - | chr5_1:7058174-7058193 | Msa0714420:CDS | 35.0% | |
| GGTTACCACTGTAATAATCA+AGG | + | chr5_1:7058224-7058243 | None:intergenic | 35.0% | |
| GATGAAGCATACATTGTACA+TGG | + | chr5_1:7058255-7058274 | None:intergenic | 35.0% | |
| ACTTCATTAGGTTCTGTCAT+TGG | + | chr5_1:7058306-7058325 | None:intergenic | 35.0% | |
| ATGGTGTAAGACACTTCATT+AGG | + | chr5_1:7058318-7058337 | None:intergenic | 35.0% | |
| TTACACCATTATGCCAAACA+TGG | - | chr5_1:7058329-7058348 | Msa0714420:CDS | 35.0% | |
| TACACCATTATGCCAAACAT+GGG | - | chr5_1:7058330-7058349 | Msa0714420:CDS | 35.0% | |
| ATAGGTGATGAATCATCATG+TGG | + | chr5_1:7058372-7058391 | None:intergenic | 35.0% | |
| GAATATCACCAACTCTGTAA+CGG | + | chr5_1:7058494-7058513 | None:intergenic | 35.0% | |
| TTCGGATAAAACAGACGAAT+CGG | - | chr5_1:7058590-7058609 | Msa0714420:intron | 35.0% | |
| GATAACATAATGTCCAGGAA+TGG | + | chr5_1:7058706-7058725 | None:intergenic | 35.0% | |
| TGATTCAACACTTCTTCTGT+TGG | + | chr5_1:7058765-7058784 | None:intergenic | 35.0% | |
| GAGTCAAGAAGTTCCATTAT+AGG | + | chr5_1:7058975-7058994 | None:intergenic | 35.0% | |
| TAATGGAACTTCTTGACTCT+AGG | - | chr5_1:7058976-7058995 | Msa0714420:CDS | 35.0% | |
| AATGGAACTTCTTGACTCTA+GGG | - | chr5_1:7058977-7058996 | Msa0714420:CDS | 35.0% | |
| AAGAATGCATGAAGGGTGAA+GGG | + | chr5_1:7056905-7056924 | None:intergenic | 40.0% | |
| ACTGAGTACTTGAAACGGTT+TGG | - | chr5_1:7057152-7057171 | Msa0714420:three_prime_UTR | 40.0% | |
| TTTGAAAGTTTCACGGTCAG+TGG | + | chr5_1:7057189-7057208 | None:intergenic | 40.0% | |
| GTCAGGTGAAAGATCTTCAT+AGG | + | chr5_1:7057231-7057250 | None:intergenic | 40.0% | |
| TTAGCAATGCGTTGAATGTC+AGG | + | chr5_1:7057248-7057267 | None:intergenic | 40.0% | |
| GACATTCAACGCATTGCTAA+CGG | - | chr5_1:7057248-7057267 | Msa0714420:CDS | 40.0% | |
| ATTGGATGAGAGGACAAGAT+CGG | + | chr5_1:7057284-7057303 | None:intergenic | 40.0% | |
| !! | AAACTCTGAGATTGGATGAG+AGG | + | chr5_1:7057294-7057313 | None:intergenic | 40.0% |
| !! | ACAACTTACTGGTTCATCAC+TGG | + | chr5_1:7057539-7057558 | None:intergenic | 40.0% |
| ! | GCTTTTCCTTTGTCCAAATC+AGG | + | chr5_1:7057691-7057710 | None:intergenic | 40.0% |
| GCAGAAACAAAAACTCCAAG+TGG | - | chr5_1:7057733-7057752 | Msa0714420:CDS | 40.0% | |
| !! | AAAAACTCCAAGTGGGTTAG+TGG | - | chr5_1:7057741-7057760 | Msa0714420:CDS | 40.0% |
| GACATGCACTGTTTGATAGA+AGG | + | chr5_1:7058051-7058070 | None:intergenic | 40.0% | |
| ! | GGGATCCGGTTTAAGTATTT+TGG | + | chr5_1:7058073-7058092 | None:intergenic | 40.0% |
| TTGTGTTAGGCCAGATTCTT+GGG | + | chr5_1:7058152-7058171 | None:intergenic | 40.0% | |
| TTTGTGTTAGGCCAGATTCT+TGG | + | chr5_1:7058153-7058172 | None:intergenic | 40.0% | |
| ! | GCCTAACACAAAGTATCTTG+AGG | - | chr5_1:7058161-7058180 | Msa0714420:CDS | 40.0% |
| CCACTGTAATAATCAAGGGT+AGG | + | chr5_1:7058219-7058238 | None:intergenic | 40.0% | |
| CCTACCCTTGATTATTACAG+TGG | - | chr5_1:7058216-7058235 | Msa0714420:CDS | 40.0% | |
| !! | ACATTGTACATGGCTTTGGT+AGG | + | chr5_1:7058245-7058264 | None:intergenic | 40.0% |
| GCATACATTGTACATGGCTT+TGG | + | chr5_1:7058249-7058268 | None:intergenic | 40.0% | |
| !! | TAGGTTCTGTCATTGGCTTA+AGG | + | chr5_1:7058299-7058318 | None:intergenic | 40.0% |
| GTAACCCATGTTTGGCATAA+TGG | + | chr5_1:7058337-7058356 | None:intergenic | 40.0% | |
| GACCTTGCTGATGTTGAAAT+CGG | - | chr5_1:7058426-7058445 | Msa0714420:CDS | 40.0% | |
| TTCCGATTTCAACATCAGCA+AGG | + | chr5_1:7058431-7058450 | None:intergenic | 40.0% | |
| GGTGATATTCTTCAAGTCAC+AGG | - | chr5_1:7058504-7058523 | Msa0714420:CDS | 40.0% | |
| TGAATTGAGGATCGGAGTTA+TGG | + | chr5_1:7058533-7058552 | None:intergenic | 40.0% | |
| CGCCTCACAAATTTGAATTG+AGG | + | chr5_1:7058546-7058565 | None:intergenic | 40.0% | |
| !! | CGTGTTGTTGAGTATCGATT+CGG | - | chr5_1:7058572-7058591 | Msa0714420:intron | 40.0% |
| GCTGATACAAAATCCATTCC+TGG | - | chr5_1:7058690-7058709 | Msa0714420:intron | 40.0% | |
| TTCAACACTTCTTCTGTTGG+AGG | + | chr5_1:7058762-7058781 | None:intergenic | 40.0% | |
| TTCACCACACGTATCTCTAA+TGG | + | chr5_1:7058861-7058880 | None:intergenic | 40.0% | |
| GAGATACGTGTGGTGAAAAA+TGG | - | chr5_1:7058864-7058883 | Msa0714420:intron | 40.0% | |
| ! | ATGGATTATGCAATATCGCG+TGG | - | chr5_1:7058903-7058922 | Msa0714420:intron | 40.0% |
| CGTGAGTTTCACTCCTATAA+TGG | - | chr5_1:7058959-7058978 | Msa0714420:CDS | 40.0% | |
| TTAGTCCTTCTCTACCTCAT+TGG | - | chr5_1:7059015-7059034 | Msa0714420:CDS | 40.0% | |
| AGAATGCATGAAGGGTGAAG+GGG | + | chr5_1:7056904-7056923 | None:intergenic | 45.0% | |
| GAAGAATGCATGAAGGGTGA+AGG | + | chr5_1:7056906-7056925 | None:intergenic | 45.0% | |
| CAGAAGAAGGTGGTTCCAAA+AGG | + | chr5_1:7057022-7057041 | None:intergenic | 45.0% | |
| !! | ATAGGTGATAACGGCGACTT+TGG | + | chr5_1:7057213-7057232 | None:intergenic | 45.0% |
| !! | CTGGTCAGAAACTCTGAGAT+TGG | + | chr5_1:7057302-7057321 | None:intergenic | 45.0% |
| CAATCTCAGAGTTTCTGACC+AGG | - | chr5_1:7057300-7057319 | Msa0714420:CDS | 45.0% | |
| GGCTGTACAATAACTGACGA+CGG | + | chr5_1:7057508-7057527 | None:intergenic | 45.0% | |
| GAACTTCATGGCGCATGATT+AGG | + | chr5_1:7057909-7057928 | None:intergenic | 45.0% | |
| GTTGAGCTGAAGGAACCTAA+TGG | + | chr5_1:7057971-7057990 | None:intergenic | 45.0% | |
| TTAGGTTCCTTCAGCTCAAC+TGG | - | chr5_1:7057971-7057990 | Msa0714420:CDS | 45.0% | |
| TAGGTTCCTTCAGCTCAACT+GGG | - | chr5_1:7057972-7057991 | Msa0714420:CDS | 45.0% | |
| GGGTTCCTGTTTCAATGTCA+TGG | + | chr5_1:7058008-7058027 | None:intergenic | 45.0% | |
| AAATTAGCGAGTTCGGGATC+CGG | + | chr5_1:7058087-7058106 | None:intergenic | 45.0% | |
| ! | GGTTATTGTCACTGGTGCTA+TGG | - | chr5_1:7058182-7058201 | Msa0714420:CDS | 45.0% |
| ! | TCAGCAAGGTCTACTAGCTT+TGG | + | chr5_1:7058417-7058436 | None:intergenic | 45.0% |
| TTCTTCTGTTGGAGGATCAG+AGG | + | chr5_1:7058754-7058773 | None:intergenic | 45.0% | |
| TGGACCATTAGAGATACGTG+TGG | - | chr5_1:7058854-7058873 | Msa0714420:intron | 45.0% | |
| GGTGAAAAATGGCACGTTTG+AGG | - | chr5_1:7058875-7058894 | Msa0714420:intron | 45.0% | |
| TGGCACGTTTGAGGAACTAA+TGG | - | chr5_1:7058884-7058903 | Msa0714420:intron | 45.0% | |
| TGCAGTTCAGGAACATCAGC+TGG | - | chr5_1:7057443-7057462 | Msa0714420:CDS | 50.0% | |
| GGTTCATCACTGGCATGAGT+AGG | + | chr5_1:7057529-7057548 | None:intergenic | 50.0% | |
| CGCCATGAAGTTCTTCGAGT+CGG | - | chr5_1:7057916-7057935 | Msa0714420:CDS | 50.0% | |
| ! | CTCCGACTCGAAGAACTTCA+TGG | + | chr5_1:7057921-7057940 | None:intergenic | 50.0% |
| TGAAGTTCTTCGAGTCGGAG+CGG | - | chr5_1:7057921-7057940 | Msa0714420:CDS | 50.0% | |
| GCTGAAGGAACCTAATGGCT+CGG | + | chr5_1:7057966-7057985 | None:intergenic | 50.0% | |
| ATTCAGCCCAGTTGAGCTGA+AGG | + | chr5_1:7057981-7058000 | None:intergenic | 50.0% | |
| GAGTCACGTGAGAGGGTTAT+AGG | + | chr5_1:7058390-7058409 | None:intergenic | 50.0% | |
| !! | GCAAGGTCTACTAGCTTTGG+AGG | + | chr5_1:7058414-7058433 | None:intergenic | 50.0% |
| GGTCTTTGCCGTTACAGAGT+TGG | - | chr5_1:7058483-7058502 | Msa0714420:CDS | 50.0% | |
| ! | GGAACTTCTTGACTCTAGGG+TGG | - | chr5_1:7058980-7058999 | Msa0714420:CDS | 50.0% |
| GGAGTCCAATGAGGTAGAGA+AGG | + | chr5_1:7059023-7059042 | None:intergenic | 50.0% | |
| ATCCTTCAACGACGTCGTTC+TGG | + | chr5_1:7059044-7059063 | None:intergenic | 50.0% | |
| TGGAGGTGAGTCACGTGAGA+GGG | + | chr5_1:7058397-7058416 | None:intergenic | 55.0% | |
| TTGGAGGTGAGTCACGTGAG+AGG | + | chr5_1:7058398-7058417 | None:intergenic | 55.0% | |
| GGAGTGAAACTCACGCACCT+AGG | + | chr5_1:7058954-7058973 | None:intergenic | 55.0% | |
| !! | CGTCGTTCTGGAGTCCAATG+AGG | + | chr5_1:7059032-7059051 | None:intergenic | 55.0% |
| CTCCAGAACGACGTCGTTGA+AGG | - | chr5_1:7059039-7059058 | Msa0714420:CDS | 55.0% | |
| ! | GGACGTGCCACTAACCCACT+TGG | + | chr5_1:7057751-7057770 | None:intergenic | 60.0% |
| ! | GTCGGAGCGGTTTTCGCTTC+CGG | - | chr5_1:7057934-7057953 | Msa0714420:CDS | 60.0% |
| ! | TCGGAGCGGTTTTCGCTTCC+GGG | - | chr5_1:7057935-7057954 | Msa0714420:CDS | 60.0% |
| ! | CCTAATGGCTCGGAGAAGCC+CGG | + | chr5_1:7057956-7057975 | None:intergenic | 60.0% |
| CCGGGCTTCTCCGAGCCATT+AGG | - | chr5_1:7057953-7057972 | Msa0714420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7056890 | 7059377 | 7056890 | ID=Msa0714420;Name=Msa0714420 |
| chr5_1 | mRNA | 7056890 | 7059377 | 7056890 | ID=Msa0714420-mRNA-1;Parent=Msa0714420;Name=Msa0714420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=25|1|1|1|1|1|3|319|628 |
| chr5_1 | exon | 7056890 | 7058586 | 7056890 | ID=Msa0714420-mRNA-1:exon:2955;Parent=Msa0714420-mRNA-1 |
| chr5_1 | exon | 7058718 | 7058819 | 7058718 | ID=Msa0714420-mRNA-1:exon:2954;Parent=Msa0714420-mRNA-1 |
| chr5_1 | exon | 7058946 | 7059377 | 7058946 | ID=Msa0714420-mRNA-1:exon:2953;Parent=Msa0714420-mRNA-1 |
| chr5_1 | five_prime_UTR | 7059353 | 7059377 | 7059353 | ID=Msa0714420-mRNA-1:five_prime_utr;Parent=Msa0714420-mRNA-1 |
| chr5_1 | CDS | 7058946 | 7059352 | 7058946 | ID=Msa0714420-mRNA-1:cds;Parent=Msa0714420-mRNA-1 |
| chr5_1 | CDS | 7058718 | 7058819 | 7058718 | ID=Msa0714420-mRNA-1:cds;Parent=Msa0714420-mRNA-1 |
| chr5_1 | CDS | 7057209 | 7058586 | 7057209 | ID=Msa0714420-mRNA-1:cds;Parent=Msa0714420-mRNA-1 |
| chr5_1 | three_prime_UTR | 7056890 | 7057208 | 7056890 | ID=Msa0714420-mRNA-1:three_prime_utr;Parent=Msa0714420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
