Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835780 | XP_003611653.1 | 96.667 | 600 | 20 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835780 | sp|O82333|GH31_ARATH | 75.124 | 603 | 133 | 4 | 1 | 600 | 1 | 589 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835780 | G7K574 | 96.667 | 600 | 20 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714420 | Msa0835780 | 0.805460 | 1.320459e-49 | -8.615850e-47 |
| Msa0756270 | Msa0835780 | 0.933510 | 1.681413e-95 | -8.615850e-47 |
| Msa0835780 | Msa1335520 | 0.923518 | 2.390545e-89 | -8.615850e-47 |
| Msa0506370 | Msa0835780 | 0.806641 | 7.453239e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835780 | MtrunA17_Chr5g0401641 | 96.667 | 600 | 20 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1204 |
| Msa0835780 | MtrunA17_Chr5g0421331 | 77.907 | 602 | 117 | 4 | 1 | 600 | 1 | 588 | 0.0 | 959 |
| Msa0835780 | MtrunA17_Chr8g0361551 | 63.311 | 586 | 204 | 3 | 24 | 600 | 18 | 601 | 0.0 | 786 |
| Msa0835780 | MtrunA17_Chr2g0318991 | 60.033 | 603 | 226 | 4 | 12 | 600 | 2 | 603 | 0.0 | 757 |
| Msa0835780 | MtrunA17_Chr5g0401631 | 88.946 | 389 | 34 | 1 | 210 | 598 | 1 | 380 | 0.0 | 730 |
| Msa0835780 | MtrunA17_Chr4g0023301 | 59.566 | 507 | 198 | 4 | 97 | 600 | 1 | 503 | 0.0 | 642 |
| Msa0835780 | MtrunA17_Chr1g0195771 | 53.253 | 584 | 263 | 5 | 23 | 596 | 56 | 639 | 0.0 | 631 |
| Msa0835780 | MtrunA17_Chr7g0275471 | 39.931 | 581 | 338 | 6 | 15 | 591 | 5 | 578 | 2.39e-146 | 435 |
| Msa0835780 | MtrunA17_Chr8g0347381 | 37.973 | 582 | 342 | 8 | 15 | 590 | 5 | 573 | 1.62e-142 | 425 |
| Msa0835780 | MtrunA17_Chr8g0347391 | 37.801 | 582 | 343 | 8 | 15 | 590 | 12 | 580 | 8.65e-138 | 413 |
| Msa0835780 | MtrunA17_Chr8g0347421 | 37.961 | 569 | 336 | 6 | 20 | 583 | 10 | 566 | 1.99e-137 | 412 |
| Msa0835780 | MtrunA17_Chr8g0347431 | 41.750 | 400 | 217 | 5 | 196 | 590 | 11 | 399 | 2.04e-109 | 334 |
| Msa0835780 | MtrunA17_Chr5g0401621 | 89.205 | 176 | 19 | 0 | 1 | 176 | 1 | 176 | 1.11e-107 | 321 |
| Msa0835780 | MtrunA17_Chr7g0259291 | 30.957 | 575 | 365 | 13 | 24 | 579 | 8 | 569 | 4.71e-80 | 263 |
| Msa0835780 | MtrunA17_Chr4g0022401 | 31.343 | 402 | 264 | 3 | 22 | 411 | 20 | 421 | 6.18e-69 | 229 |
| Msa0835780 | MtrunA17_Chr8g0352391 | 32.000 | 325 | 163 | 7 | 271 | 591 | 1 | 271 | 1.50e-49 | 173 |
| Msa0835780 | MtrunA17_Chr1g0169871 | 43.452 | 168 | 95 | 0 | 327 | 494 | 138 | 305 | 1.31e-42 | 156 |
| Msa0835780 | MtrunA17_Chr4g0022391 | 37.931 | 174 | 101 | 3 | 411 | 583 | 11 | 178 | 4.72e-38 | 139 |
| Msa0835780 | MtrunA17_Chr7g0259401 | 30.824 | 279 | 155 | 7 | 145 | 418 | 4 | 249 | 2.39e-32 | 125 |
| Msa0835780 | MtrunA17_Chr4g0023291 | 64.368 | 87 | 31 | 0 | 23 | 109 | 32 | 118 | 1.11e-29 | 113 |
| Msa0835780 | MtrunA17_Chr8g0347441 | 46.535 | 101 | 54 | 0 | 20 | 120 | 10 | 110 | 1.53e-23 | 96.7 |
| Msa0835780 | MtrunA17_Chr8g0352401 | 39.604 | 101 | 61 | 0 | 20 | 120 | 1 | 101 | 2.76e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835780 | AT2G14960.1 | 75.124 | 603 | 133 | 4 | 1 | 600 | 1 | 589 | 0.0 | 944 |
| Msa0835780 | AT2G23170.1 | 75.537 | 605 | 133 | 6 | 1 | 600 | 1 | 595 | 0.0 | 932 |
| Msa0835780 | AT4G37390.1 | 74.257 | 606 | 147 | 4 | 1 | 600 | 1 | 603 | 0.0 | 923 |
| Msa0835780 | AT1G59500.1 | 70.383 | 601 | 171 | 4 | 1 | 599 | 1 | 596 | 0.0 | 856 |
| Msa0835780 | AT5G54510.1 | 64.094 | 596 | 202 | 5 | 14 | 600 | 16 | 608 | 0.0 | 800 |
| Msa0835780 | AT4G27260.1 | 64.034 | 595 | 204 | 4 | 14 | 600 | 16 | 608 | 0.0 | 800 |
| Msa0835780 | AT1G28130.1 | 53.654 | 602 | 259 | 7 | 14 | 596 | 4 | 604 | 0.0 | 659 |
| Msa0835780 | AT2G47750.1 | 49.658 | 584 | 279 | 8 | 21 | 596 | 9 | 585 | 0.0 | 588 |
| Msa0835780 | AT1G23160.1 | 47.945 | 584 | 285 | 6 | 13 | 588 | 5 | 577 | 0.0 | 560 |
| Msa0835780 | AT5G13320.3 | 46.573 | 569 | 288 | 4 | 27 | 588 | 15 | 574 | 0.0 | 543 |
| Msa0835780 | AT5G13320.2 | 46.573 | 569 | 288 | 4 | 27 | 588 | 30 | 589 | 0.0 | 543 |
| Msa0835780 | AT5G13320.1 | 46.573 | 569 | 288 | 4 | 27 | 588 | 15 | 574 | 0.0 | 543 |
| Msa0835780 | AT5G13370.1 | 46.967 | 577 | 298 | 6 | 23 | 594 | 13 | 586 | 0.0 | 539 |
| Msa0835780 | AT5G13360.3 | 46.633 | 594 | 303 | 6 | 7 | 594 | 78 | 663 | 0.0 | 531 |
| Msa0835780 | AT5G13360.1 | 47.232 | 578 | 294 | 5 | 23 | 594 | 13 | 585 | 0.0 | 531 |
| Msa0835780 | AT5G13360.2 | 47.232 | 578 | 294 | 5 | 23 | 594 | 13 | 585 | 0.0 | 531 |
| Msa0835780 | AT1G28130.2 | 55.315 | 461 | 189 | 5 | 153 | 596 | 1 | 461 | 0.0 | 520 |
| Msa0835780 | AT5G13380.1 | 46.540 | 578 | 298 | 5 | 23 | 594 | 43 | 615 | 1.17e-178 | 520 |
| Msa0835780 | AT1G48660.2 | 44.041 | 579 | 311 | 5 | 19 | 592 | 2 | 572 | 2.59e-175 | 509 |
| Msa0835780 | AT5G13350.1 | 44.828 | 580 | 306 | 7 | 23 | 594 | 13 | 586 | 3.10e-175 | 509 |
| Msa0835780 | AT5G13350.2 | 44.828 | 580 | 306 | 7 | 23 | 594 | 13 | 586 | 3.10e-175 | 509 |
| Msa0835780 | AT1G48660.1 | 44.194 | 577 | 310 | 5 | 19 | 592 | 2 | 569 | 1.81e-174 | 507 |
| Msa0835780 | AT5G51470.1 | 44.092 | 567 | 305 | 4 | 25 | 588 | 14 | 571 | 3.85e-168 | 491 |
| Msa0835780 | AT1G48670.1 | 41.053 | 570 | 273 | 6 | 27 | 592 | 11 | 521 | 8.77e-148 | 437 |
| Msa0835780 | AT2G46370.4 | 39.108 | 583 | 337 | 8 | 15 | 591 | 16 | 586 | 1.04e-140 | 421 |
| Msa0835780 | AT2G46370.1 | 39.108 | 583 | 337 | 8 | 15 | 591 | 5 | 575 | 1.23e-140 | 421 |
| Msa0835780 | AT2G46370.2 | 39.108 | 583 | 337 | 8 | 15 | 591 | 5 | 575 | 1.23e-140 | 421 |
| Msa0835780 | AT5G51470.2 | 43.121 | 487 | 266 | 3 | 105 | 588 | 3 | 481 | 1.74e-138 | 412 |
| Msa0835780 | AT1G48670.2 | 46.394 | 416 | 213 | 3 | 180 | 592 | 2 | 410 | 7.97e-131 | 390 |
| Msa0835780 | AT2G46370.3 | 38.583 | 508 | 296 | 6 | 88 | 591 | 1 | 496 | 8.45e-123 | 372 |
| Msa0835780 | AT4G03400.2 | 32.933 | 583 | 370 | 6 | 17 | 583 | 5 | 582 | 7.32e-118 | 362 |
| Msa0835780 | AT4G03400.1 | 32.933 | 583 | 370 | 6 | 17 | 583 | 5 | 582 | 7.32e-118 | 362 |
| Msa0835780 | AT1G48690.1 | 39.896 | 193 | 112 | 2 | 19 | 211 | 2 | 190 | 1.64e-39 | 143 |
Find 130 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTAAGTATGTTTAATT+TGG | 0.137522 | 5_4:-9168367 | Msa0835780:three_prime_UTR |
| GGGATCCGGTTTAAGTATTT+TGG | 0.152591 | 5_4:+9169537 | None:intergenic |
| GCTTCATCTGAATGTTATTT+TGG | 0.191327 | 5_4:-9169340 | Msa0835780:CDS |
| TTGAAACGATTTGGACTTAA+TGG | 0.207365 | 5_4:-9170451 | Msa0835780:CDS |
| TGATTAAGTATGTTTAATTT+GGG | 0.235882 | 5_4:-9168366 | Msa0835780:three_prime_UTR |
| CTGGACATTATGTTATCTAT+TGG | 0.236480 | 5_4:-9168898 | Msa0835780:CDS |
| CTTATAATCACAACTTATTC+AGG | 0.253897 | 5_4:-9169145 | Msa0835780:CDS |
| ATCCTTCAACGACGTCGTTC+TGG | 0.275444 | 5_4:+9168566 | None:intergenic |
| TTAGGTTCCTTCAGCTCAAC+TGG | 0.281934 | 5_4:-9169636 | Msa0835780:CDS |
| GCATACATTGTACATGGTTT+TGG | 0.286159 | 5_4:+9169361 | None:intergenic |
| CAACAGATATGTTCCTGATT+TGG | 0.286352 | 5_4:-9169932 | Msa0835780:intron |
| GAGTCAAGAAGTTCCATTAT+AGG | 0.293990 | 5_4:+9168635 | None:intergenic |
| ACTTCATTTGGTTCTGTCAT+AGG | 0.297603 | 5_4:+9169304 | None:intergenic |
| TGTTGAATCTGAAATCCTTT+TGG | 0.297924 | 5_4:-9170608 | Msa0835780:CDS |
| TGGACATTATGTTATCTATT+GGG | 0.303558 | 5_4:-9168897 | Msa0835780:CDS |
| TTTGTGTTAGGCCAGATTCT+TGG | 0.325164 | 5_4:+9169457 | None:intergenic |
| TGTAACAAAATTAGCGAGTT+CGG | 0.326262 | 5_4:+9169516 | None:intergenic |
| ACTGAGTACTTGAAACGATT+TGG | 0.330070 | 5_4:-9170460 | Msa0835780:CDS |
| TCGCCGGACGAATTTGAATT+GGG | 0.330650 | 5_4:+9169063 | None:intergenic |
| TTAGCAATGCGTTGAATATC+AGG | 0.337815 | 5_4:+9170367 | None:intergenic |
| CCGGGCTTCTCCGAGCCATT+AGG | 0.338420 | 5_4:-9169654 | Msa0835780:CDS |
| GGACTTGTTAACACATTGTA+AGG | 0.342995 | 5_4:+9169784 | None:intergenic |
| TTCGCCGGACGAATTTGAAT+TGG | 0.344894 | 5_4:+9169062 | None:intergenic |
| GTAACCCATGTTTGGCATAA+TGG | 0.346043 | 5_4:+9169273 | None:intergenic |
| GACATGCACTGTTTGATAGA+AGG | 0.351174 | 5_4:+9169559 | None:intergenic |
| GTAACAAAATTAGCGAGTTC+GGG | 0.351298 | 5_4:+9169517 | None:intergenic |
| TTGTGTTAGGCCAGATTCTT+GGG | 0.352673 | 5_4:+9169458 | None:intergenic |
| CGTGAGTTTCACTCCTATAA+TGG | 0.353049 | 5_4:-9168648 | Msa0835780:CDS |
| GAGTCACGTGAGAGGGTTAT+AGG | 0.358227 | 5_4:+9169220 | None:intergenic |
| GAATCAATGTTGTTTGGTTA+TGG | 0.360826 | 5_4:-9168828 | Msa0835780:CDS |
| AAGAATGTTCAGGAGACAAT+TGG | 0.367565 | 5_4:-9169492 | Msa0835780:CDS |
| TTTGTTACAAAAGAATGTTC+AGG | 0.371323 | 5_4:-9169502 | Msa0835780:CDS |
| TTCACCACACGTATCTCTAA+TGG | 0.376428 | 5_4:+9168749 | None:intergenic |
| TGGCACGTTTGAGGAACTAA+TGG | 0.378498 | 5_4:-9168723 | Msa0835780:CDS |
| TTATCAAAGCCGAAACAAAA+AGG | 0.380489 | 5_4:+9168272 | None:intergenic |
| GCTGATACAAAATCCATTCC+TGG | 0.383064 | 5_4:-9168917 | Msa0835780:CDS |
| AATTCAAAGTAACCCATGTT+TGG | 0.385809 | 5_4:+9169265 | None:intergenic |
| GAACTTCATGGCGCATGATT+AGG | 0.390929 | 5_4:+9169701 | None:intergenic |
| TTAGTCCTTCTCTACCTCAT+TGG | 0.392898 | 5_4:-9168592 | Msa0835780:CDS |
| ATAGGTGATAACAGCAACTT+TGG | 0.394928 | 5_4:+9170402 | None:intergenic |
| GGGTTCCTGTTTCAATGTCA+TGG | 0.396046 | 5_4:+9169602 | None:intergenic |
| AAATGAAGCTATCCTTTGTC+TGG | 0.396144 | 5_4:-9169761 | Msa0835780:CDS |
| CTCCGACTCGAAGAACTTCA+TGG | 0.400753 | 5_4:+9169689 | None:intergenic |
| TTGTAGTAGGCTGTTAGAAC+TGG | 0.404647 | 5_4:+9169838 | None:intergenic |
| CGTCTTGTTGAGTATTGATT+CGG | 0.407443 | 5_4:-9169035 | Msa0835780:CDS |
| AGAGTAGCTGATAATTCAAT+TGG | 0.409619 | 5_4:-9168773 | Msa0835780:CDS |
| ATGGTGTAGGACACTTCATT+TGG | 0.414625 | 5_4:+9169292 | None:intergenic |
| ACCTCAAGGTACTTTGTGTT+AGG | 0.415322 | 5_4:+9169445 | None:intergenic |
| CATGTCCAAAATACTTAAAC+CGG | 0.418636 | 5_4:-9169542 | Msa0835780:CDS |
| TTGGTTCTGTCATAGGCTTA+AGG | 0.419185 | 5_4:+9169311 | None:intergenic |
| TCAGCAAGGTCTACTAGCTT+TGG | 0.421816 | 5_4:+9169193 | None:intergenic |
| AGACAAAGGATAGCTTCATT+TGG | 0.426976 | 5_4:+9169763 | None:intergenic |
| AACGTATAATCCCAAGAATC+TGG | 0.429037 | 5_4:-9169468 | Msa0835780:CDS |
| TACCTTGAGGTTATTGTCAC+TGG | 0.430760 | 5_4:-9169433 | Msa0835780:CDS |
| TCCATTTCTTGATGAATAGT+AGG | 0.439105 | 5_4:+9170137 | None:intergenic |
| GCCTACTATTCATCAAGAAA+TGG | 0.443491 | 5_4:-9170138 | Msa0835780:CDS |
| ATGTATACTCAGATGCTTTG+TGG | 0.445009 | 5_4:-9169724 | Msa0835780:CDS |
| AGTGTTGAATCAATGTTGTT+TGG | 0.445864 | 5_4:-9168834 | Msa0835780:CDS |
| TGATTCAACACTTCTTCTGT+TGG | 0.447138 | 5_4:+9168845 | None:intergenic |
| ATTGGATGAGAGGACAAGAT+TGG | 0.448540 | 5_4:+9170331 | None:intergenic |
| TTAGTCCATGACATTGAAAC+AGG | 0.449357 | 5_4:-9169607 | Msa0835780:CDS |
| CTGGTAAGAAACTCTGAGAT+TGG | 0.450542 | 5_4:+9170313 | None:intergenic |
| TTCAACACTTCTTCTGTTGG+AGG | 0.453608 | 5_4:+9168848 | None:intergenic |
| AAATTAGCGAGTTCGGGATC+CGG | 0.454702 | 5_4:+9169523 | None:intergenic |
| GACCTTGCTGATGTTGAAAT+CGG | 0.457109 | 5_4:-9169181 | Msa0835780:CDS |
| CGCCGGACGAATTTGAATTG+GGG | 0.464944 | 5_4:+9169064 | None:intergenic |
| CTCCAGAACGACGTCGTTGA+AGG | 0.467415 | 5_4:-9168568 | Msa0835780:exon |
| ATCAGGTAAAAGATCTTCAT+AGG | 0.467919 | 5_4:+9170384 | None:intergenic |
| AAAATGGGAAATTTGCTAGA+TGG | 0.469709 | 5_4:-9168465 | Msa0835780:three_prime_UTR |
| AGAATGTTCAGGAGACAATT+GGG | 0.479539 | 5_4:-9169491 | Msa0835780:CDS |
| AACACATTGTAAGGGTCAAA+TGG | 0.480939 | 5_4:+9169793 | None:intergenic |
| TTTGAGATTTCATTTCATCA+TGG | 0.486702 | 5_4:-9170632 | Msa0835780:exon |
| GGTGATATTCTTCAAGTGAC+CGG | 0.488267 | 5_4:-9169103 | Msa0835780:CDS |
| GGTTATTGTCACTGGTGCTA+TGG | 0.489560 | 5_4:-9169425 | Msa0835780:CDS |
| GGTTACCACTGTAATAATCA+AGG | 0.497324 | 5_4:+9169386 | None:intergenic |
| TAATGGAACTTCTTGACTCT+AGG | 0.502283 | 5_4:-9168631 | Msa0835780:CDS |
| CAATCTCAGAGTTTCTTACC+AGG | 0.504649 | 5_4:-9170312 | Msa0835780:intron |
| ACAATGAAACAGAAAGAAAG+AGG | 0.507518 | 5_4:+9170694 | None:intergenic |
| TACAGTTCAGGAACATCTGC+TGG | 0.508840 | 5_4:-9170176 | Msa0835780:intron |
| TTAATCAGTATAAAGTTCCT+AGG | 0.514790 | 5_4:-9168673 | Msa0835780:CDS |
| CAGAAGAAGGTGGTTCCAAA+AGG | 0.514827 | 5_4:+9170593 | None:intergenic |
| GGTCTTTGCCGTTACCGAGT+TGG | 0.514934 | 5_4:-9169124 | Msa0835780:CDS |
| GCAAGGTCTACTAGCTTTGG+AGG | 0.517582 | 5_4:+9169196 | None:intergenic |
| AATGGAACTTCTTGACTCTA+GGG | 0.522711 | 5_4:-9168630 | Msa0835780:CDS |
| TTCGGATAAAACAGACGAAT+CGG | 0.523805 | 5_4:-9169017 | Msa0835780:CDS |
| GCCGGACGAATTTGAATTGG+GGG | 0.531976 | 5_4:+9169065 | None:intergenic |
| GGGGTCGGAGTTATGAAATC+CGG | 0.536582 | 5_4:+9169084 | None:intergenic |
| CCTAATGGCTCGGAGAAGCC+CGG | 0.537712 | 5_4:+9169654 | None:intergenic |
| GTTGAGCTGAAGGAACCTAA+TGG | 0.538471 | 5_4:+9169639 | None:intergenic |
| ACAACTCACTGGTTCATCAC+TGG | 0.538925 | 5_4:+9170083 | None:intergenic |
| CTACACCATTATGCCAAACA+TGG | 0.539405 | 5_4:-9169278 | Msa0835780:CDS |
| GATGAAGCATACATTGTACA+TGG | 0.539933 | 5_4:+9169355 | None:intergenic |
| TATGTTCCTGATTTGGACAA+AGG | 0.547413 | 5_4:-9169925 | Msa0835780:CDS |
| TTTGAATGTTTCACGATCAG+TGG | 0.548023 | 5_4:+9170426 | None:intergenic |
| GATAACATAATGTCCAGGAA+TGG | 0.549039 | 5_4:+9168904 | None:intergenic |
| TCAACAAGACGTTCTTTCGC+CGG | 0.562497 | 5_4:+9169047 | None:intergenic |
| TAGGTTCCTTCAGCTCAACT+GGG | 0.562924 | 5_4:-9169635 | Msa0835780:CDS |
| GATTAAGTATGTTTAATTTG+GGG | 0.574022 | 5_4:-9168365 | Msa0835780:three_prime_UTR |
| ATTCAGCCCAGTTGAGCTGA+AGG | 0.574788 | 5_4:+9169629 | None:intergenic |
| AAACTCTGAGATTGGATGAG+AGG | 0.580999 | 5_4:+9170321 | None:intergenic |
| GGACGTGCCACTAACCCACT+TGG | 0.582325 | 5_4:+9169859 | None:intergenic |
| CAATAGATAACATAATGTCC+AGG | 0.583043 | 5_4:+9168899 | None:intergenic |
| TGGAGGTGAGTCACGTGAGA+GGG | 0.584345 | 5_4:+9169213 | None:intergenic |
| CGCCATGAAGTTCTTCGAGT+CGG | 0.584929 | 5_4:-9169691 | Msa0835780:CDS |
| GGAGTCCAATGAGGTAGAGA+AGG | 0.586779 | 5_4:+9168587 | None:intergenic |
| CCACTGTAATAATCAAGGGT+TGG | 0.588012 | 5_4:+9169391 | None:intergenic |
| CCAACCCTTGATTATTACAG+TGG | 0.591185 | 5_4:-9169391 | Msa0835780:CDS |
| GACTTGTTAACACATTGTAA+GGG | 0.591653 | 5_4:+9169785 | None:intergenic |
| CGTCGTTCTGGAGTCCAATG+AGG | 0.593147 | 5_4:+9168578 | None:intergenic |
| GGAACTTCTTGACTCTAGGG+TGG | 0.594581 | 5_4:-9168627 | Msa0835780:CDS |
| GAATATCACCAACTCGGTAA+CGG | 0.599476 | 5_4:+9169116 | None:intergenic |
| GGTTCATCACTGGCATGAGT+AGG | 0.600133 | 5_4:+9170093 | None:intergenic |
| GATATTCAACGCATTGCTAA+CGG | 0.601749 | 5_4:-9170364 | Msa0835780:CDS |
| GCTGAAGGAACCTAATGGCT+CGG | 0.602143 | 5_4:+9169644 | None:intergenic |
| CATGTTTGGCATAATGGTGT+AGG | 0.602304 | 5_4:+9169279 | None:intergenic |
| GTTACCACTGTAATAATCAA+GGG | 0.604520 | 5_4:+9169387 | None:intergenic |
| TACCGATTTCAACATCAGCA+AGG | 0.605061 | 5_4:+9169179 | None:intergenic |
| CTTGAAGAATATCACCAACT+CGG | 0.620317 | 5_4:+9169110 | None:intergenic |
| TTGAATTCAGTTTATAGACA+AGG | 0.625321 | 5_4:-9168797 | Msa0835780:CDS |
| TTGGAGGTGAGTCACGTGAG+AGG | 0.626134 | 5_4:+9169212 | None:intergenic |
| TTTGAAATGAATCCAGACAA+AGG | 0.634217 | 5_4:+9169749 | None:intergenic |
| GGAGTGAAACTCACGCACCT+AGG | 0.634419 | 5_4:+9168656 | None:intergenic |
| CACCAGTGACAATAACCTCA+AGG | 0.636499 | 5_4:+9169431 | None:intergenic |
| TACACCATTATGCCAAACAT+GGG | 0.650318 | 5_4:-9169277 | Msa0835780:CDS |
| GAGAGGACAAGATTGGAGAA+CGG | 0.654286 | 5_4:+9170338 | None:intergenic |
| ATGGATTATGCAATATCGCG+TGG | 0.656625 | 5_4:-9168704 | Msa0835780:CDS |
| TGAAGTTCTTCGAGTCGGAG+CGG | 0.662649 | 5_4:-9169686 | Msa0835780:CDS |
| GCCTAACACAAAGTACCTTG+AGG | 0.669941 | 5_4:-9169446 | Msa0835780:CDS |
| ATAGGTGATGAATCATCATG+TGG | 0.689225 | 5_4:+9169238 | None:intergenic |
| TGGACCATTAGAGATACGTG+TGG | 0.736597 | 5_4:-9168753 | Msa0835780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAAAGCAAAA+TGG | - | chr5_4:9170493-9170512 | Msa0835780:CDS | 10.0% |
| !! | ATAATAATAAAAAGCAAAAT+GGG | - | chr5_4:9170494-9170513 | Msa0835780:CDS | 10.0% |
| !!! | ATTAAATACTGTTTCTTAAT+TGG | - | chr5_4:9169016-9169035 | Msa0835780:CDS | 15.0% |
| !!! | TTAAATACTGTTTCTTAATT+GGG | - | chr5_4:9169017-9169036 | Msa0835780:CDS | 15.0% |
| !! | ATGATTAAGTATGTTTAATT+TGG | - | chr5_4:9170607-9170626 | Msa0835780:CDS | 15.0% |
| !!! | TGATTAAGTATGTTTAATTT+GGG | - | chr5_4:9170608-9170627 | Msa0835780:CDS | 15.0% |
| !!! | TTTATTTTTCCTTTTTGTTT+CGG | - | chr5_4:9170693-9170712 | Msa0835780:five_prime_UTR | 15.0% |
| !! | ACTACAATATAATAAACTCA+CGG | + | chr5_4:9168942-9168961 | None:intergenic | 20.0% |
| !!! | GATTAAGTATGTTTAATTTG+GGG | - | chr5_4:9170609-9170628 | Msa0835780:CDS | 20.0% |
| !! | AACATTCAAAAGCAAAAATA+GGG | + | chr5_4:9170673-9170692 | None:intergenic | 20.0% |
| !! | AAACATTCAAAAGCAAAAAT+AGG | + | chr5_4:9170674-9170693 | None:intergenic | 20.0% |
| !! | TTTGAGATTTCATTTCATCA+TGG | - | chr5_4:9168342-9168361 | Msa0835780:three_prime_UTR | 25.0% |
| ! | TTTGTTACAAAAGAATGTTC+AGG | - | chr5_4:9169472-9169491 | Msa0835780:CDS | 25.0% |
| ! | CTTATAATCACAACTTATTC+AGG | - | chr5_4:9169829-9169848 | Msa0835780:CDS | 25.0% |
| ! | TGGACATTATGTTATCTATT+GGG | - | chr5_4:9170077-9170096 | Msa0835780:intron | 25.0% |
| ! | TTGAATTCAGTTTATAGACA+AGG | - | chr5_4:9170177-9170196 | Msa0835780:intron | 25.0% |
| ! | TTAATCAGTATAAAGTTCCT+AGG | - | chr5_4:9170301-9170320 | Msa0835780:intron | 25.0% |
| ACAATGAAACAGAAAGAAAG+AGG | + | chr5_4:9168283-9168302 | None:intergenic | 30.0% | |
| !! | TGTTGAATCTGAAATCCTTT+TGG | - | chr5_4:9168366-9168385 | Msa0835780:three_prime_UTR | 30.0% |
| ! | TTGAAACGATTTGGACTTAA+TGG | - | chr5_4:9168523-9168542 | Msa0835780:three_prime_UTR | 30.0% |
| ATCAGGTAAAAGATCTTCAT+AGG | + | chr5_4:9168593-9168612 | None:intergenic | 30.0% | |
| AGTATCAATGAATATGAACC+TGG | + | chr5_4:9168683-9168702 | None:intergenic | 30.0% | |
| GTGAATGAAAATTACAGTTC+AGG | - | chr5_4:9168786-9168805 | Msa0835780:CDS | 30.0% | |
| TCCATTTCTTGATGAATAGT+AGG | + | chr5_4:9168840-9168859 | None:intergenic | 30.0% | |
| !! | GACTTGTTAACACATTGTAA+GGG | + | chr5_4:9169192-9169211 | None:intergenic | 30.0% |
| ! | TTTGAAATGAATCCAGACAA+AGG | + | chr5_4:9169228-9169247 | None:intergenic | 30.0% |
| !!! | ATCAGTGATTTTTGGGTTTA+GGG | + | chr5_4:9169395-9169414 | None:intergenic | 30.0% |
| ! | TAGAAGGATCAGTGATTTTT+GGG | + | chr5_4:9169402-9169421 | None:intergenic | 30.0% |
| ! | ATAGAAGGATCAGTGATTTT+TGG | + | chr5_4:9169403-9169422 | None:intergenic | 30.0% |
| CATGTCCAAAATACTTAAAC+CGG | - | chr5_4:9169432-9169451 | Msa0835780:CDS | 30.0% | |
| TGTAACAAAATTAGCGAGTT+CGG | + | chr5_4:9169461-9169480 | None:intergenic | 30.0% | |
| GTTACCACTGTAATAATCAA+GGG | + | chr5_4:9169590-9169609 | None:intergenic | 30.0% | |
| !! | GCTTCATCTGAATGTTATTT+TGG | - | chr5_4:9169634-9169653 | Msa0835780:CDS | 30.0% |
| AATTCAAAGTAACCCATGTT+TGG | + | chr5_4:9169712-9169731 | None:intergenic | 30.0% | |
| CAATAGATAACATAATGTCC+AGG | + | chr5_4:9170078-9170097 | None:intergenic | 30.0% | |
| CTGGACATTATGTTATCTAT+TGG | - | chr5_4:9170076-9170095 | Msa0835780:intron | 30.0% | |
| ! | AGTGTTGAATCAATGTTGTT+TGG | - | chr5_4:9170140-9170159 | Msa0835780:CDS | 30.0% |
| ! | GAATCAATGTTGTTTGGTTA+TGG | - | chr5_4:9170146-9170165 | Msa0835780:CDS | 30.0% |
| AGAGTAGCTGATAATTCAAT+TGG | - | chr5_4:9170201-9170220 | Msa0835780:intron | 30.0% | |
| !! | AAAATGGGAAATTTGCTAGA+TGG | - | chr5_4:9170509-9170528 | Msa0835780:CDS | 30.0% |
| TTATCAAAGCCGAAACAAAA+AGG | + | chr5_4:9170705-9170724 | None:intergenic | 30.0% | |
| ! | TTTTCATCAACAGAAGAAGG+TGG | + | chr5_4:9168394-9168413 | None:intergenic | 35.0% |
| ! | CTCTTTTCATCAACAGAAGA+AGG | + | chr5_4:9168397-9168416 | None:intergenic | 35.0% |
| ACTGAGTACTTGAAACGATT+TGG | - | chr5_4:9168514-9168533 | Msa0835780:three_prime_UTR | 35.0% | |
| TTTGAATGTTTCACGATCAG+TGG | + | chr5_4:9168551-9168570 | None:intergenic | 35.0% | |
| ATAGGTGATAACAGCAACTT+TGG | + | chr5_4:9168575-9168594 | None:intergenic | 35.0% | |
| TTAGCAATGCGTTGAATATC+AGG | + | chr5_4:9168610-9168629 | None:intergenic | 35.0% | |
| GATATTCAACGCATTGCTAA+CGG | - | chr5_4:9168610-9168629 | Msa0835780:CDS | 35.0% | |
| GCCTACTATTCATCAAGAAA+TGG | - | chr5_4:9168836-9168855 | Msa0835780:CDS | 35.0% | |
| CTATAACAGAAACAACTCAC+TGG | + | chr5_4:9168905-9168924 | None:intergenic | 35.0% | |
| CAACAGATATGTTCCTGATT+TGG | - | chr5_4:9169042-9169061 | Msa0835780:CDS | 35.0% | |
| !! | TATGTTCCTGATTTGGACAA+AGG | - | chr5_4:9169049-9169068 | Msa0835780:CDS | 35.0% |
| CAGAAACAAAAACTCCAAGT+GGG | - | chr5_4:9169101-9169120 | Msa0835780:CDS | 35.0% | |
| !! | GAACTGTTCACTTTTGTAGT+AGG | + | chr5_4:9169152-9169171 | None:intergenic | 35.0% |
| AACACATTGTAAGGGTCAAA+TGG | + | chr5_4:9169184-9169203 | None:intergenic | 35.0% | |
| !! | GGACTTGTTAACACATTGTA+AGG | + | chr5_4:9169193-9169212 | None:intergenic | 35.0% |
| AGACAAAGGATAGCTTCATT+TGG | + | chr5_4:9169214-9169233 | None:intergenic | 35.0% | |
| AAATGAAGCTATCCTTTGTC+TGG | - | chr5_4:9169213-9169232 | Msa0835780:CDS | 35.0% | |
| ATGTATACTCAGATGCTTTG+TGG | - | chr5_4:9169250-9169269 | Msa0835780:CDS | 35.0% | |
| TTAGTCCATGACATTGAAAC+AGG | - | chr5_4:9169367-9169386 | Msa0835780:CDS | 35.0% | |
| !!! | GATCAGTGATTTTTGGGTTT+AGG | + | chr5_4:9169396-9169415 | None:intergenic | 35.0% |
| GTAACAAAATTAGCGAGTTC+GGG | + | chr5_4:9169460-9169479 | None:intergenic | 35.0% | |
| AAGAATGTTCAGGAGACAAT+TGG | - | chr5_4:9169482-9169501 | Msa0835780:CDS | 35.0% | |
| AGAATGTTCAGGAGACAATT+GGG | - | chr5_4:9169483-9169502 | Msa0835780:CDS | 35.0% | |
| AACGTATAATCCCAAGAATC+TGG | - | chr5_4:9169506-9169525 | Msa0835780:CDS | 35.0% | |
| GGTTACCACTGTAATAATCA+AGG | + | chr5_4:9169591-9169610 | None:intergenic | 35.0% | |
| !!! | ACATTGTACATGGTTTTGGA+AGG | + | chr5_4:9169612-9169631 | None:intergenic | 35.0% |
| ! | GCATACATTGTACATGGTTT+TGG | + | chr5_4:9169616-9169635 | None:intergenic | 35.0% |
| GATGAAGCATACATTGTACA+TGG | + | chr5_4:9169622-9169641 | None:intergenic | 35.0% | |
| !! | ACTTCATTTGGTTCTGTCAT+AGG | + | chr5_4:9169673-9169692 | None:intergenic | 35.0% |
| TACACCATTATGCCAAACAT+GGG | - | chr5_4:9169697-9169716 | Msa0835780:CDS | 35.0% | |
| ATAGGTGATGAATCATCATG+TGG | + | chr5_4:9169739-9169758 | None:intergenic | 35.0% | |
| CTTGAAGAATATCACCAACT+CGG | + | chr5_4:9169867-9169886 | None:intergenic | 35.0% | |
| !! | CGTCTTGTTGAGTATTGATT+CGG | - | chr5_4:9169939-9169958 | Msa0835780:intron | 35.0% |
| TTCGGATAAAACAGACGAAT+CGG | - | chr5_4:9169957-9169976 | Msa0835780:intron | 35.0% | |
| GATAACATAATGTCCAGGAA+TGG | + | chr5_4:9170073-9170092 | None:intergenic | 35.0% | |
| TGATTCAACACTTCTTCTGT+TGG | + | chr5_4:9170132-9170151 | None:intergenic | 35.0% | |
| GAGTCAAGAAGTTCCATTAT+AGG | + | chr5_4:9170342-9170361 | None:intergenic | 35.0% | |
| TAATGGAACTTCTTGACTCT+AGG | - | chr5_4:9170343-9170362 | Msa0835780:CDS | 35.0% | |
| AATGGAACTTCTTGACTCTA+GGG | - | chr5_4:9170344-9170363 | Msa0835780:CDS | 35.0% | |
| ATTGGATGAGAGGACAAGAT+TGG | + | chr5_4:9168646-9168665 | None:intergenic | 40.0% | |
| !! | AAACTCTGAGATTGGATGAG+AGG | + | chr5_4:9168656-9168675 | None:intergenic | 40.0% |
| !! | CTGGTAAGAAACTCTGAGAT+TGG | + | chr5_4:9168664-9168683 | None:intergenic | 40.0% |
| CAATCTCAGAGTTTCTTACC+AGG | - | chr5_4:9168662-9168681 | Msa0835780:CDS | 40.0% | |
| ! | GCTTTTCCTTTGTCCAAATC+AGG | + | chr5_4:9169058-9169077 | None:intergenic | 40.0% |
| GCAGAAACAAAAACTCCAAG+TGG | - | chr5_4:9169100-9169119 | Msa0835780:CDS | 40.0% | |
| !! | AAAAACTCCAAGTGGGTTAG+TGG | - | chr5_4:9169108-9169127 | Msa0835780:CDS | 40.0% |
| TTGTAGTAGGCTGTTAGAAC+TGG | + | chr5_4:9169139-9169158 | None:intergenic | 40.0% | |
| GACATGCACTGTTTGATAGA+AGG | + | chr5_4:9169418-9169437 | None:intergenic | 40.0% | |
| ! | GGGATCCGGTTTAAGTATTT+TGG | + | chr5_4:9169440-9169459 | None:intergenic | 40.0% |
| TTGTGTTAGGCCAGATTCTT+GGG | + | chr5_4:9169519-9169538 | None:intergenic | 40.0% | |
| TTTGTGTTAGGCCAGATTCT+TGG | + | chr5_4:9169520-9169539 | None:intergenic | 40.0% | |
| ! | ACCTCAAGGTACTTTGTGTT+AGG | + | chr5_4:9169532-9169551 | None:intergenic | 40.0% |
| TACCTTGAGGTTATTGTCAC+TGG | - | chr5_4:9169541-9169560 | Msa0835780:CDS | 40.0% | |
| CCACTGTAATAATCAAGGGT+TGG | + | chr5_4:9169586-9169605 | None:intergenic | 40.0% | |
| CCAACCCTTGATTATTACAG+TGG | - | chr5_4:9169583-9169602 | Msa0835780:CDS | 40.0% | |
| !! | TTGGTTCTGTCATAGGCTTA+AGG | + | chr5_4:9169666-9169685 | None:intergenic | 40.0% |
| ATGGTGTAGGACACTTCATT+TGG | + | chr5_4:9169685-9169704 | None:intergenic | 40.0% | |
| CATGTTTGGCATAATGGTGT+AGG | + | chr5_4:9169698-9169717 | None:intergenic | 40.0% | |
| CTACACCATTATGCCAAACA+TGG | - | chr5_4:9169696-9169715 | Msa0835780:CDS | 40.0% | |
| GTAACCCATGTTTGGCATAA+TGG | + | chr5_4:9169704-9169723 | None:intergenic | 40.0% | |
| GACCTTGCTGATGTTGAAAT+CGG | - | chr5_4:9169793-9169812 | Msa0835780:CDS | 40.0% | |
| !! | TACCGATTTCAACATCAGCA+AGG | + | chr5_4:9169798-9169817 | None:intergenic | 40.0% |
| GAATATCACCAACTCGGTAA+CGG | + | chr5_4:9169861-9169880 | None:intergenic | 40.0% | |
| GGTGATATTCTTCAAGTGAC+CGG | - | chr5_4:9169871-9169890 | Msa0835780:CDS | 40.0% | |
| GCTGATACAAAATCCATTCC+TGG | - | chr5_4:9170057-9170076 | Msa0835780:intron | 40.0% | |
| ! | CTATTGGGAGCTTTTGATGA+AGG | - | chr5_4:9170092-9170111 | Msa0835780:CDS | 40.0% |
| TTCAACACTTCTTCTGTTGG+AGG | + | chr5_4:9170129-9170148 | None:intergenic | 40.0% | |
| TTCACCACACGTATCTCTAA+TGG | + | chr5_4:9170228-9170247 | None:intergenic | 40.0% | |
| GAGATACGTGTGGTGAAAAA+TGG | - | chr5_4:9170231-9170250 | Msa0835780:intron | 40.0% | |
| ! | ATGGATTATGCAATATCGCG+TGG | - | chr5_4:9170270-9170289 | Msa0835780:intron | 40.0% |
| CGTGAGTTTCACTCCTATAA+TGG | - | chr5_4:9170326-9170345 | Msa0835780:CDS | 40.0% | |
| TTAGTCCTTCTCTACCTCAT+TGG | - | chr5_4:9170382-9170401 | Msa0835780:CDS | 40.0% | |
| CAGAAGAAGGTGGTTCCAAA+AGG | + | chr5_4:9168384-9168403 | None:intergenic | 45.0% | |
| GAGAGGACAAGATTGGAGAA+CGG | + | chr5_4:9168639-9168658 | None:intergenic | 45.0% | |
| TACAGTTCAGGAACATCTGC+TGG | - | chr5_4:9168798-9168817 | Msa0835780:CDS | 45.0% | |
| !! | ACAACTCACTGGTTCATCAC+TGG | + | chr5_4:9168894-9168913 | None:intergenic | 45.0% |
| GAACTTCATGGCGCATGATT+AGG | + | chr5_4:9169276-9169295 | None:intergenic | 45.0% | |
| GTTGAGCTGAAGGAACCTAA+TGG | + | chr5_4:9169338-9169357 | None:intergenic | 45.0% | |
| TTAGGTTCCTTCAGCTCAAC+TGG | - | chr5_4:9169338-9169357 | Msa0835780:CDS | 45.0% | |
| TAGGTTCCTTCAGCTCAACT+GGG | - | chr5_4:9169339-9169358 | Msa0835780:CDS | 45.0% | |
| GGGTTCCTGTTTCAATGTCA+TGG | + | chr5_4:9169375-9169394 | None:intergenic | 45.0% | |
| AAATTAGCGAGTTCGGGATC+CGG | + | chr5_4:9169454-9169473 | None:intergenic | 45.0% | |
| ! | GCCTAACACAAAGTACCTTG+AGG | - | chr5_4:9169528-9169547 | Msa0835780:CDS | 45.0% |
| CACCAGTGACAATAACCTCA+AGG | + | chr5_4:9169546-9169565 | None:intergenic | 45.0% | |
| ! | GGTTATTGTCACTGGTGCTA+TGG | - | chr5_4:9169549-9169568 | Msa0835780:CDS | 45.0% |
| ! | TCAGCAAGGTCTACTAGCTT+TGG | + | chr5_4:9169784-9169803 | None:intergenic | 45.0% |
| GACGAATTTGAATTGGGGGT+CGG | + | chr5_4:9169908-9169927 | None:intergenic | 45.0% | |
| ACCCCCAATTCAAATTCGTC+CGG | - | chr5_4:9169908-9169927 | Msa0835780:CDS | 45.0% | |
| TCGCCGGACGAATTTGAATT+GGG | + | chr5_4:9169914-9169933 | None:intergenic | 45.0% | |
| TTCGCCGGACGAATTTGAAT+TGG | + | chr5_4:9169915-9169934 | None:intergenic | 45.0% | |
| TCAACAAGACGTTCTTTCGC+CGG | + | chr5_4:9169930-9169949 | None:intergenic | 45.0% | |
| TGGACCATTAGAGATACGTG+TGG | - | chr5_4:9170221-9170240 | Msa0835780:intron | 45.0% | |
| GGTGAAAAATGGCACGTTTG+AGG | - | chr5_4:9170242-9170261 | Msa0835780:intron | 45.0% | |
| TGGCACGTTTGAGGAACTAA+TGG | - | chr5_4:9170251-9170270 | Msa0835780:intron | 45.0% | |
| GGTTCATCACTGGCATGAGT+AGG | + | chr5_4:9168884-9168903 | None:intergenic | 50.0% | |
| CGCCATGAAGTTCTTCGAGT+CGG | - | chr5_4:9169283-9169302 | Msa0835780:CDS | 50.0% | |
| ! | CTCCGACTCGAAGAACTTCA+TGG | + | chr5_4:9169288-9169307 | None:intergenic | 50.0% |
| TGAAGTTCTTCGAGTCGGAG+CGG | - | chr5_4:9169288-9169307 | Msa0835780:CDS | 50.0% | |
| GCTGAAGGAACCTAATGGCT+CGG | + | chr5_4:9169333-9169352 | None:intergenic | 50.0% | |
| ATTCAGCCCAGTTGAGCTGA+AGG | + | chr5_4:9169348-9169367 | None:intergenic | 50.0% | |
| GAGTCACGTGAGAGGGTTAT+AGG | + | chr5_4:9169757-9169776 | None:intergenic | 50.0% | |
| !! | GCAAGGTCTACTAGCTTTGG+AGG | + | chr5_4:9169781-9169800 | None:intergenic | 50.0% |
| GGGGTCGGAGTTATGAAATC+CGG | + | chr5_4:9169893-9169912 | None:intergenic | 50.0% | |
| GCCGGACGAATTTGAATTGG+GGG | + | chr5_4:9169912-9169931 | None:intergenic | 50.0% | |
| CGCCGGACGAATTTGAATTG+GGG | + | chr5_4:9169913-9169932 | None:intergenic | 50.0% | |
| ! | GGAACTTCTTGACTCTAGGG+TGG | - | chr5_4:9170347-9170366 | Msa0835780:CDS | 50.0% |
| GGAGTCCAATGAGGTAGAGA+AGG | + | chr5_4:9170390-9170409 | None:intergenic | 50.0% | |
| ATCCTTCAACGACGTCGTTC+TGG | + | chr5_4:9170411-9170430 | None:intergenic | 50.0% | |
| TGGAGGTGAGTCACGTGAGA+GGG | + | chr5_4:9169764-9169783 | None:intergenic | 55.0% | |
| TTGGAGGTGAGTCACGTGAG+AGG | + | chr5_4:9169765-9169784 | None:intergenic | 55.0% | |
| GGTCTTTGCCGTTACCGAGT+TGG | - | chr5_4:9169850-9169869 | Msa0835780:CDS | 55.0% | |
| GGAGTGAAACTCACGCACCT+AGG | + | chr5_4:9170321-9170340 | None:intergenic | 55.0% | |
| !! | CGTCGTTCTGGAGTCCAATG+AGG | + | chr5_4:9170399-9170418 | None:intergenic | 55.0% |
| CTCCAGAACGACGTCGTTGA+AGG | - | chr5_4:9170406-9170425 | Msa0835780:CDS | 55.0% | |
| ! | GGACGTGCCACTAACCCACT+TGG | + | chr5_4:9169118-9169137 | None:intergenic | 60.0% |
| ! | GTCGGAGCGGTTTTCGCTTC+CGG | - | chr5_4:9169301-9169320 | Msa0835780:CDS | 60.0% |
| ! | TCGGAGCGGTTTTCGCTTCC+GGG | - | chr5_4:9169302-9169321 | Msa0835780:CDS | 60.0% |
| ! | CCTAATGGCTCGGAGAAGCC+CGG | + | chr5_4:9169323-9169342 | None:intergenic | 60.0% |
| CCGGGCTTCTCCGAGCCATT+AGG | - | chr5_4:9169320-9169339 | Msa0835780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9168258 | 9170738 | 9168258 | ID=Msa0835780;Name=Msa0835780 |
| chr5_4 | mRNA | 9168258 | 9170738 | 9168258 | ID=Msa0835780-mRNA-1;Parent=Msa0835780;Name=Msa0835780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=103|1|1|1|1|1|3|313|600 |
| chr5_4 | exon | 9168258 | 9169948 | 9168258 | ID=Msa0835780-mRNA-1:exon:4029;Parent=Msa0835780-mRNA-1 |
| chr5_4 | exon | 9170092 | 9170193 | 9170092 | ID=Msa0835780-mRNA-1:exon:4028;Parent=Msa0835780-mRNA-1 |
| chr5_4 | exon | 9170313 | 9170738 | 9170313 | ID=Msa0835780-mRNA-1:exon:4027;Parent=Msa0835780-mRNA-1 |
| chr5_4 | five_prime_UTR | 9170636 | 9170738 | 9170636 | ID=Msa0835780-mRNA-1:five_prime_utr;Parent=Msa0835780-mRNA-1 |
| chr5_4 | CDS | 9170313 | 9170635 | 9170313 | ID=Msa0835780-mRNA-1:cds;Parent=Msa0835780-mRNA-1 |
| chr5_4 | CDS | 9170092 | 9170193 | 9170092 | ID=Msa0835780-mRNA-1:cds;Parent=Msa0835780-mRNA-1 |
| chr5_4 | CDS | 9168571 | 9169948 | 9168571 | ID=Msa0835780-mRNA-1:cds;Parent=Msa0835780-mRNA-1 |
| chr5_4 | three_prime_UTR | 9168258 | 9168570 | 9168258 | ID=Msa0835780-mRNA-1:three_prime_utr;Parent=Msa0835780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
