Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714770 | XP_003611714.1 | 94.627 | 335 | 17 | 1 | 14 | 347 | 10 | 344 | 0.0 | 604 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714770 | sp|Q9FUA4|SPT_ARATH | 49.099 | 222 | 86 | 5 | 78 | 296 | 160 | 357 | 2.97e-46 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714770 | G7K6L5 | 94.627 | 335 | 17 | 1 | 14 | 347 | 10 | 344 | 0.0 | 604 |
Gene ID | Type | Classification |
---|---|---|
Msa0714770 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0714770 | Msa0756840 | 0.913517 | 5.614260e-84 | -8.615850e-47 |
Msa0714770 | Msa0836170 | 0.940703 | 1.482692e-100 | -8.615850e-47 |
Msa0342990 | Msa0714770 | 0.906586 | 1.266271e-80 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714770 | MtrunA17_Chr5g0402031 | 94.627 | 335 | 17 | 1 | 14 | 347 | 10 | 344 | 0.0 | 604 |
Msa0714770 | MtrunA17_Chr1g0153241 | 81.319 | 91 | 16 | 1 | 97 | 186 | 73 | 163 | 3.48e-42 | 147 |
Msa0714770 | MtrunA17_Chr1g0193321 | 57.983 | 119 | 49 | 1 | 79 | 197 | 434 | 551 | 1.42e-33 | 131 |
Msa0714770 | MtrunA17_Chr7g0262691 | 57.500 | 120 | 42 | 3 | 72 | 183 | 213 | 331 | 5.94e-30 | 119 |
Msa0714770 | MtrunA17_Chr1g0182791 | 59.813 | 107 | 38 | 3 | 77 | 183 | 289 | 390 | 1.78e-29 | 118 |
Msa0714770 | MtrunA17_Chr3g0095391 | 48.551 | 138 | 60 | 5 | 109 | 243 | 310 | 439 | 1.35e-26 | 109 |
Msa0714770 | MtrunA17_Chr7g0271251 | 55.140 | 107 | 42 | 1 | 104 | 204 | 428 | 534 | 4.20e-24 | 103 |
Msa0714770 | MtrunA17_Chr7g0231461 | 68.182 | 66 | 21 | 0 | 109 | 174 | 298 | 363 | 9.81e-23 | 99.0 |
Msa0714770 | MtrunA17_Chr7g0270871 | 50.549 | 91 | 42 | 1 | 88 | 178 | 185 | 272 | 4.21e-22 | 95.9 |
Msa0714770 | MtrunA17_Chr4g0074161 | 36.029 | 136 | 67 | 2 | 40 | 172 | 152 | 270 | 6.17e-19 | 87.4 |
Msa0714770 | MtrunA17_Chr1g0190731 | 46.250 | 80 | 43 | 0 | 93 | 172 | 178 | 257 | 2.37e-17 | 82.0 |
Msa0714770 | MtrunA17_Chr5g0393721 | 44.048 | 84 | 45 | 1 | 101 | 184 | 219 | 300 | 9.12e-16 | 77.4 |
Msa0714770 | MtrunA17_Chr8g0385911 | 32.353 | 170 | 86 | 8 | 95 | 243 | 135 | 296 | 8.92e-15 | 74.3 |
Msa0714770 | MtrunA17_Chr6g0484271 | 35.938 | 128 | 67 | 3 | 49 | 173 | 106 | 221 | 6.73e-14 | 70.9 |
Msa0714770 | MtrunA17_Chr3g0131771 | 41.758 | 91 | 48 | 3 | 94 | 183 | 136 | 222 | 1.28e-13 | 70.9 |
Msa0714770 | MtrunA17_Chr3g0134741 | 39.535 | 86 | 50 | 1 | 98 | 183 | 221 | 304 | 2.59e-13 | 69.7 |
Msa0714770 | MtrunA17_Chr1g0207311 | 37.179 | 78 | 49 | 0 | 107 | 184 | 195 | 272 | 4.59e-13 | 68.9 |
Msa0714770 | MtrunA17_Chr3g0144641 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 5.47e-13 | 69.3 |
Msa0714770 | MtrunA17_Chr1g0152651 | 40.244 | 82 | 47 | 1 | 102 | 183 | 270 | 349 | 7.25e-13 | 68.9 |
Msa0714770 | MtrunA17_Chr7g0234761 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 8.74e-13 | 69.3 |
Msa0714770 | MtrunA17_Chr1g0207301 | 38.824 | 85 | 52 | 0 | 115 | 199 | 295 | 379 | 8.85e-13 | 68.6 |
Msa0714770 | MtrunA17_Chr8g0365941 | 49.231 | 65 | 32 | 1 | 110 | 173 | 307 | 371 | 9.46e-13 | 68.9 |
Msa0714770 | MtrunA17_Chr8g0339091 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 1.34e-12 | 68.6 |
Msa0714770 | MtrunA17_Chr8g0363921 | 46.154 | 65 | 34 | 1 | 110 | 173 | 153 | 217 | 1.49e-12 | 67.0 |
Msa0714770 | MtrunA17_Chr1g0152131 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 2.56e-12 | 67.4 |
Msa0714770 | MtrunA17_Chr4g0035101 | 47.692 | 65 | 33 | 1 | 110 | 173 | 145 | 209 | 2.65e-12 | 67.0 |
Msa0714770 | MtrunA17_Chr5g0415291 | 38.384 | 99 | 58 | 2 | 76 | 173 | 82 | 178 | 3.43e-12 | 65.5 |
Msa0714770 | MtrunA17_Chr5g0421111 | 47.692 | 65 | 33 | 1 | 110 | 173 | 367 | 431 | 6.90e-12 | 66.6 |
Msa0714770 | MtrunA17_Chr1g0184841 | 43.590 | 78 | 44 | 0 | 95 | 172 | 107 | 184 | 3.65e-11 | 63.2 |
Msa0714770 | MtrunA17_Chr1g0185621 | 41.975 | 81 | 41 | 1 | 100 | 174 | 451 | 531 | 4.41e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0714770 | AT4G36930.1 | 49.099 | 222 | 86 | 5 | 78 | 296 | 160 | 357 | 3.01e-47 | 164 |
Msa0714770 | AT5G67110.1 | 52.976 | 168 | 56 | 5 | 16 | 181 | 14 | 160 | 2.23e-37 | 134 |
Msa0714770 | AT1G09530.3 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT1G09530.2 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT1G09530.5 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT1G09530.1 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT1G09530.4 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT1G09530.6 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.82e-31 | 124 |
Msa0714770 | AT2G20180.7 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.96e-30 | 118 |
Msa0714770 | AT2G20180.1 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.96e-30 | 118 |
Msa0714770 | AT2G20180.5 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.96e-30 | 118 |
Msa0714770 | AT2G20180.4 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 2.04e-29 | 118 |
Msa0714770 | AT2G20180.6 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 2.04e-29 | 118 |
Msa0714770 | AT2G20180.2 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 2.04e-29 | 118 |
Msa0714770 | AT2G20180.3 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 2.04e-29 | 118 |
Msa0714770 | AT2G20180.8 | 64.444 | 90 | 22 | 1 | 80 | 169 | 260 | 339 | 3.26e-28 | 112 |
Msa0714770 | AT4G00050.2 | 50.862 | 116 | 49 | 3 | 61 | 174 | 62 | 171 | 6.65e-27 | 108 |
Msa0714770 | AT4G00050.3 | 50.862 | 116 | 49 | 3 | 61 | 174 | 164 | 273 | 1.98e-26 | 108 |
Msa0714770 | AT4G00050.1 | 55.340 | 103 | 41 | 2 | 74 | 174 | 174 | 273 | 2.14e-26 | 108 |
Msa0714770 | AT4G28800.1 | 43.382 | 136 | 72 | 4 | 48 | 181 | 189 | 321 | 7.26e-23 | 99.4 |
Msa0714770 | AT2G46970.2 | 44.248 | 113 | 59 | 1 | 103 | 215 | 187 | 295 | 2.82e-22 | 97.1 |
Msa0714770 | AT2G46970.3 | 44.248 | 113 | 59 | 1 | 103 | 215 | 196 | 304 | 3.23e-22 | 97.1 |
Msa0714770 | AT2G46970.1 | 44.248 | 113 | 59 | 1 | 103 | 215 | 218 | 326 | 4.03e-22 | 97.1 |
Msa0714770 | AT4G28815.2 | 37.162 | 148 | 75 | 5 | 108 | 249 | 68 | 203 | 8.82e-21 | 90.1 |
Msa0714770 | AT4G28790.1 | 50.962 | 104 | 47 | 3 | 80 | 183 | 246 | 345 | 1.10e-20 | 92.8 |
Msa0714770 | AT3G59060.3 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.23e-20 | 92.8 |
Msa0714770 | AT3G59060.2 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.23e-20 | 92.8 |
Msa0714770 | AT3G59060.4 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.23e-20 | 92.8 |
Msa0714770 | AT3G59060.1 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.25e-20 | 92.8 |
Msa0714770 | AT4G28800.2 | 34.259 | 216 | 121 | 9 | 48 | 248 | 201 | 410 | 1.72e-20 | 92.4 |
Msa0714770 | AT4G28815.1 | 37.162 | 148 | 75 | 5 | 108 | 249 | 144 | 279 | 2.27e-20 | 90.5 |
Msa0714770 | AT2G24260.2 | 60.317 | 63 | 25 | 0 | 110 | 172 | 37 | 99 | 7.18e-20 | 87.8 |
Msa0714770 | AT2G43010.2 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.03e-19 | 90.1 |
Msa0714770 | AT2G43010.1 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.06e-19 | 90.1 |
Msa0714770 | AT2G43010.4 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.09e-19 | 89.7 |
Msa0714770 | AT2G43010.3 | 75.806 | 62 | 15 | 0 | 109 | 170 | 259 | 320 | 1.24e-19 | 89.7 |
Msa0714770 | AT4G30980.1 | 37.778 | 135 | 71 | 2 | 38 | 172 | 73 | 194 | 1.67e-19 | 88.2 |
Msa0714770 | AT2G43010.5 | 75.806 | 62 | 15 | 0 | 109 | 170 | 294 | 355 | 1.70e-19 | 89.7 |
Msa0714770 | AT5G58010.1 | 57.576 | 66 | 28 | 0 | 107 | 172 | 98 | 163 | 1.88e-19 | 87.8 |
Msa0714770 | AT2G24260.1 | 60.317 | 63 | 25 | 0 | 110 | 172 | 140 | 202 | 1.95e-19 | 88.6 |
Msa0714770 | AT4G28790.2 | 54.255 | 94 | 40 | 2 | 80 | 173 | 246 | 336 | 1.97e-19 | 88.2 |
Msa0714770 | AT4G30980.2 | 37.778 | 135 | 71 | 2 | 38 | 172 | 121 | 242 | 2.37e-19 | 88.2 |
Msa0714770 | AT5G67110.3 | 41.667 | 168 | 53 | 6 | 16 | 181 | 14 | 138 | 3.72e-18 | 81.6 |
Msa0714770 | AT5G61270.2 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.51e-17 | 80.9 |
Msa0714770 | AT5G61270.3 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.51e-17 | 80.9 |
Msa0714770 | AT5G61270.1 | 58.333 | 72 | 30 | 0 | 105 | 176 | 157 | 228 | 6.60e-17 | 81.3 |
Msa0714770 | AT3G62090.1 | 36.571 | 175 | 82 | 6 | 99 | 249 | 156 | 325 | 1.20e-16 | 80.5 |
Msa0714770 | AT3G62090.2 | 36.571 | 175 | 82 | 6 | 99 | 249 | 173 | 342 | 1.23e-16 | 80.5 |
Msa0714770 | AT5G67110.2 | 42.361 | 144 | 60 | 5 | 16 | 157 | 14 | 136 | 3.46e-16 | 75.1 |
Msa0714770 | AT1G25330.1 | 35.897 | 117 | 64 | 2 | 110 | 215 | 106 | 222 | 7.50e-15 | 73.2 |
Msa0714770 | AT4G28811.1 | 57.500 | 80 | 34 | 0 | 92 | 171 | 335 | 414 | 1.12e-14 | 75.5 |
Msa0714770 | AT1G26260.3 | 37.736 | 106 | 50 | 2 | 84 | 173 | 133 | 238 | 2.61e-14 | 73.6 |
Msa0714770 | AT1G26260.4 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.65e-14 | 73.9 |
Msa0714770 | AT1G26260.1 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.65e-14 | 73.9 |
Msa0714770 | AT1G26260.6 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.65e-14 | 73.9 |
Msa0714770 | AT1G26260.2 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.65e-14 | 73.9 |
Msa0714770 | AT1G26260.5 | 37.736 | 106 | 50 | 2 | 84 | 173 | 162 | 267 | 2.77e-14 | 73.6 |
Msa0714770 | AT1G02340.1 | 35.616 | 146 | 66 | 5 | 84 | 229 | 123 | 240 | 3.52e-14 | 72.4 |
Msa0714770 | AT4G33880.1 | 40.217 | 92 | 50 | 2 | 96 | 184 | 253 | 342 | 3.53e-14 | 73.2 |
Msa0714770 | AT1G02340.2 | 35.616 | 146 | 66 | 5 | 84 | 229 | 116 | 233 | 3.73e-14 | 72.4 |
Msa0714770 | AT1G27740.1 | 37.374 | 99 | 57 | 2 | 100 | 195 | 161 | 257 | 7.19e-14 | 71.2 |
Msa0714770 | AT1G68920.3 | 39.316 | 117 | 58 | 4 | 110 | 224 | 304 | 409 | 7.24e-14 | 72.8 |
Msa0714770 | AT1G68920.1 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.94e-14 | 72.8 |
Msa0714770 | AT1G68920.4 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.94e-14 | 72.8 |
Msa0714770 | AT1G68920.2 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.94e-14 | 72.8 |
Msa0714770 | AT5G50915.3 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.18e-13 | 70.5 |
Msa0714770 | AT5G50915.4 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.18e-13 | 70.5 |
Msa0714770 | AT5G50915.1 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.20e-13 | 70.9 |
Msa0714770 | AT5G50915.2 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.20e-13 | 70.9 |
Msa0714770 | AT5G43175.1 | 31.967 | 122 | 78 | 2 | 77 | 195 | 103 | 222 | 2.74e-13 | 68.9 |
Msa0714770 | AT3G07340.2 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 3.99e-13 | 70.5 |
Msa0714770 | AT2G14760.1 | 39.506 | 81 | 47 | 1 | 104 | 184 | 235 | 313 | 4.36e-13 | 69.7 |
Msa0714770 | AT3G07340.1 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 5.05e-13 | 70.1 |
Msa0714770 | AT5G48560.2 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.33e-12 | 68.9 |
Msa0714770 | AT4G36540.2 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.42e-12 | 67.8 |
Msa0714770 | AT4G36540.1 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.43e-12 | 67.8 |
Msa0714770 | AT5G48560.1 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.54e-12 | 68.9 |
Msa0714770 | AT2G14760.3 | 41.791 | 67 | 39 | 0 | 117 | 183 | 259 | 325 | 1.55e-12 | 68.2 |
Msa0714770 | AT2G18300.2 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.50e-12 | 67.4 |
Msa0714770 | AT2G18300.1 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.52e-12 | 67.4 |
Msa0714770 | AT2G18300.3 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 3.15e-12 | 67.4 |
Msa0714770 | AT4G34530.1 | 44.615 | 65 | 35 | 1 | 110 | 173 | 174 | 238 | 3.32e-12 | 67.0 |
Msa0714770 | AT5G62610.2 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.41e-12 | 66.6 |
Msa0714770 | AT5G62610.1 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.41e-12 | 66.6 |
Msa0714770 | AT3G23690.1 | 35.922 | 103 | 62 | 2 | 72 | 173 | 158 | 257 | 3.98e-12 | 67.0 |
Msa0714770 | AT1G59640.1 | 46.154 | 65 | 34 | 1 | 110 | 173 | 138 | 202 | 4.03e-12 | 66.2 |
Msa0714770 | AT1G59640.2 | 44.737 | 76 | 39 | 2 | 99 | 173 | 129 | 202 | 4.42e-12 | 66.6 |
Msa0714770 | AT1G10120.2 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.13e-12 | 66.6 |
Msa0714770 | AT1G10120.1 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.13e-12 | 66.6 |
Msa0714770 | AT1G73830.2 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.32e-11 | 64.7 |
Msa0714770 | AT1G73830.1 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.43e-11 | 64.3 |
Msa0714770 | AT1G18400.2 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 6.69e-11 | 62.4 |
Msa0714770 | AT1G18400.1 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 8.14e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATGCACCTTGTTAGAATT+TGG | 0.170114 | 5_1:-7575084 | None:intergenic |
CTTGGAGCTGAAGCTGTTTA+AGG | 0.179292 | 5_1:-7575233 | None:intergenic |
TCCATCTTGAAGCTGGTTAA+TGG | 0.190515 | 5_1:-7574254 | None:intergenic |
AGAGTAGATGTCATATTTAA+AGG | 0.257417 | 5_1:-7575977 | None:intergenic |
ACAACACAGAAACTTCTTTC+GGG | 0.279808 | 5_1:+7576101 | Msa0714770:CDS |
CAAAGTCAGCTGGTGCTTCT+AGG | 0.289683 | 5_1:+7574864 | Msa0714770:CDS |
ACTTCTTTCGGGGTGGAATC+TGG | 0.303794 | 5_1:+7576112 | Msa0714770:CDS |
AATTTATTGCATTCAATTGC+TGG | 0.330715 | 5_1:-7576298 | None:intergenic |
AACAACACAGAAACTTCTTT+CGG | 0.333925 | 5_1:+7576100 | Msa0714770:CDS |
ATCGCAGTTAAGTAGGTAAA+TGG | 0.341590 | 5_1:+7576564 | Msa0714770:exon |
TGGTGTGAAAATATTGAATA+TGG | 0.359124 | 5_1:-7574092 | None:intergenic |
GAAGCACCAGCTGACTTTGT+TGG | 0.365170 | 5_1:-7574860 | None:intergenic |
GGCTTACCTCTGAAGATTGT+TGG | 0.371609 | 5_1:-7576159 | None:intergenic |
CCAACACCACAAAATGCTTA+AGG | 0.385497 | 5_1:-7576698 | None:intergenic |
AATGTATCTTCCTCTTCTGT+TGG | 0.387184 | 5_1:+7574322 | Msa0714770:CDS |
ACTTTGCAAACTTGTGTTGC+CGG | 0.389000 | 5_1:+7576487 | Msa0714770:CDS |
CAGATGCTGTCATTGAGAAA+TGG | 0.389953 | 5_1:+7575860 | Msa0714770:intron |
CAACACCACAAAATGCTTAA+GGG | 0.399934 | 5_1:-7576697 | None:intergenic |
CGCTCCTGACTGATCTCTTC+CGG | 0.402152 | 5_1:-7576506 | None:intergenic |
GAGTAGATGTCATATTTAAA+GGG | 0.403422 | 5_1:-7575976 | None:intergenic |
TACGAGAAAGTTGGTTTGGT+TGG | 0.405686 | 5_1:-7574051 | None:intergenic |
GATACATTTAAAGCATGGTT+TGG | 0.405835 | 5_1:-7574307 | None:intergenic |
ACGAGAAAGTTGGTTTGGTT+GGG | 0.408918 | 5_1:-7574050 | None:intergenic |
GCCTCTGGCCTATTTGACTT+GGG | 0.415621 | 5_1:+7576734 | Msa0714770:three_prime_UTR |
GCTTCATCTTCTTCCATGCC+AGG | 0.419239 | 5_1:+7574229 | Msa0714770:CDS |
TACATTCTCTGCCTTTGTCT+CGG | 0.426810 | 5_1:+7575918 | Msa0714770:CDS |
TCCTCTTCTGTTGGAGCAGG+AGG | 0.430203 | 5_1:+7574331 | Msa0714770:CDS |
CTCTGGCCTATTTGACTTGG+GGG | 0.432947 | 5_1:+7576736 | Msa0714770:three_prime_UTR |
TGCAAAGTATTGTTAGTAGT+AGG | 0.434216 | 5_1:-7576472 | None:intergenic |
TCTGTGTTGTTAATATATGA+AGG | 0.439351 | 5_1:-7576088 | None:intergenic |
AGTTCATAATTTGTCAGAAA+AGG | 0.440757 | 5_1:+7574916 | Msa0714770:CDS |
CTGCGATGTAAATATAATGT+TGG | 0.441190 | 5_1:-7576548 | None:intergenic |
TGCGATGTAAATATAATGTT+GGG | 0.441986 | 5_1:-7576547 | None:intergenic |
TATTTACATCGCAGTTAAGT+AGG | 0.447661 | 5_1:+7576557 | Msa0714770:CDS |
TTTGAGAGTTACGAGAAAGT+TGG | 0.450621 | 5_1:-7574060 | None:intergenic |
TTTAAATTTGCAGGAGGGTG+TGG | 0.452272 | 5_1:+7574817 | Msa0714770:intron |
AACAAGTCTTCGCCGTGTAT+TGG | 0.455886 | 5_1:-7576269 | None:intergenic |
TAGATTGGATGCATAAAGTA+AGG | 0.456385 | 5_1:-7576020 | None:intergenic |
TTGAGAACCGCCTAATAGAT+TGG | 0.459843 | 5_1:-7576327 | None:intergenic |
TCTTCCTCTTCTGTTGGAGC+AGG | 0.460002 | 5_1:+7574328 | Msa0714770:CDS |
AAAAGATACAAACCTGTACT+TGG | 0.469577 | 5_1:-7575251 | None:intergenic |
CATCCTATGTACTTTCATGA+AGG | 0.470473 | 5_1:+7575893 | Msa0714770:CDS |
CATAAAGTAAGGAGTTGTCT+AGG | 0.474565 | 5_1:-7576009 | None:intergenic |
AGCCTCTGGCCTATTTGACT+TGG | 0.475386 | 5_1:+7576733 | Msa0714770:three_prime_UTR |
AGATCTTTCCATCTTGAAGC+TGG | 0.476129 | 5_1:-7574261 | None:intergenic |
GAGTTACGAGAAAGTTGGTT+TGG | 0.479678 | 5_1:-7574055 | None:intergenic |
GACTTGTTGAGCAGAGAAGA+AGG | 0.487830 | 5_1:+7575019 | Msa0714770:intron |
TGAAGCTGGTTAATGGATCC+TGG | 0.492297 | 5_1:-7574247 | None:intergenic |
GAAAATATTGAATATGGTTG+TGG | 0.497202 | 5_1:-7574086 | None:intergenic |
ACAGCTTCAGCTCCAAGTAC+AGG | 0.499989 | 5_1:+7575239 | Msa0714770:CDS |
GCCTTTGTCTCGGATGAGTA+CGG | 0.506740 | 5_1:+7575928 | Msa0714770:CDS |
CCTCTGGCCTATTTGACTTG+GGG | 0.506876 | 5_1:+7576735 | Msa0714770:three_prime_UTR |
AAGGAGTTGTCTAGGGGATG+AGG | 0.512056 | 5_1:-7576001 | None:intergenic |
TTGAGCAGAGAAGAAGGAGT+AGG | 0.520380 | 5_1:+7575025 | Msa0714770:intron |
TCCATTAACCAGCTTCAAGA+TGG | 0.520381 | 5_1:+7574253 | Msa0714770:CDS |
GAAGGATAGGAAGACATTGA+TGG | 0.522616 | 5_1:-7576070 | None:intergenic |
GGTAAGTGGTAACAAGCCTC+TGG | 0.523351 | 5_1:+7576719 | Msa0714770:three_prime_UTR |
AGGAAGATACATTTAAAGCA+TGG | 0.529279 | 5_1:-7574312 | None:intergenic |
TGGTCTAGAAGTTGAATCAA+AGG | 0.533794 | 5_1:-7574287 | None:intergenic |
GTTGTTAATATATGAAGGAT+AGG | 0.536631 | 5_1:-7576083 | None:intergenic |
ATAAAGTAAGGAGTTGTCTA+GGG | 0.541699 | 5_1:-7576008 | None:intergenic |
GAAGTTCCAACAAAGTCAGC+TGG | 0.551060 | 5_1:+7574854 | Msa0714770:CDS |
TCCTCCTGCTCCAACAGAAG+AGG | 0.551374 | 5_1:-7574332 | None:intergenic |
AGAGATTTCGTCTTGTGAAG+AGG | 0.551908 | 5_1:-7574176 | None:intergenic |
AGAATTTCAGTCGGGCGCAA+TGG | 0.555643 | 5_1:+7576444 | Msa0714770:CDS |
AGCTGTCAAAGAATTTCAGT+CGG | 0.555801 | 5_1:+7576435 | Msa0714770:intron |
AACATAACAACAACATGGCT+CGG | 0.564736 | 5_1:+7574137 | Msa0714770:CDS |
GCTGTCAAAGAATTTCAGTC+GGG | 0.565127 | 5_1:+7576436 | Msa0714770:intron |
CAACACAGAAACTTCTTTCG+GGG | 0.582522 | 5_1:+7576102 | Msa0714770:CDS |
CACAGAAACTTCTTTCGGGG+TGG | 0.588598 | 5_1:+7576105 | Msa0714770:CDS |
CTGGTTAATGGATCCTGGCA+TGG | 0.589932 | 5_1:-7574242 | None:intergenic |
AATCTATTAGGCGGTTCTCA+AGG | 0.591562 | 5_1:+7576329 | Msa0714770:CDS |
TGATTTGTGAAGCCAATACA+CGG | 0.610208 | 5_1:+7576257 | Msa0714770:intron |
AAGCCTTCATGAAAGTACAT+AGG | 0.613283 | 5_1:-7575896 | None:intergenic |
TCCGTACTCATCCGAGACAA+AGG | 0.621173 | 5_1:-7575929 | None:intergenic |
GTTGCCGGAAGAGATCAGTC+AGG | 0.629530 | 5_1:+7576502 | Msa0714770:CDS |
ATGAGTACGGAGTTGAGTGA+AGG | 0.632944 | 5_1:+7575941 | Msa0714770:CDS |
ACGGAGTTGAGTGAAGGAAA+CGG | 0.636148 | 5_1:+7575947 | Msa0714770:CDS |
ACGTCTCCAACAATCTTCAG+AGG | 0.636386 | 5_1:+7576153 | Msa0714770:CDS |
TCTAATTCCAAATTCTAACA+AGG | 0.656662 | 5_1:+7575077 | Msa0714770:CDS |
TAAAGTAAGGAGTTGTCTAG+GGG | 0.660787 | 5_1:-7576007 | None:intergenic |
AAGGGATTTCTATGTTTACG+AGG | 0.664139 | 5_1:-7576679 | None:intergenic |
GTTGGAGCAGGAGGACTCAG+TGG | 0.665702 | 5_1:+7574340 | Msa0714770:CDS |
AAGAAGATGAAGCTGAACGA+AGG | 0.671619 | 5_1:-7574219 | None:intergenic |
CCCCAAGTCAAATAGGCCAG+AGG | 0.675693 | 5_1:-7576735 | None:intergenic |
CGGAAGAGATCAGTCAGGAG+CGG | 0.684799 | 5_1:+7576507 | Msa0714770:CDS |
TGAATATGACTGTGAAAGTG+AGG | 0.701990 | 5_1:+7574375 | Msa0714770:CDS |
AATGGAACATAACAACAACA+TGG | 0.706557 | 5_1:+7574132 | Msa0714770:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAAGTATTATTCTTTTT+AGG | - | chr5_1:7574690-7574709 | None:intergenic | 15.0% |
!!! | ATTTTTAAACCATAGTTTAA+AGG | + | chr5_1:7575108-7575127 | Msa0714770:intron | 15.0% |
!!! | TTTTTAAACCATAGTTTAAA+GGG | + | chr5_1:7575109-7575128 | Msa0714770:intron | 15.0% |
!!! | AAATATTTAGTATTGATGAT+GGG | - | chr5_1:7575425-7575444 | None:intergenic | 15.0% |
!!! | TAAATATTTAGTATTGATGA+TGG | - | chr5_1:7575426-7575445 | None:intergenic | 15.0% |
!!! | AGATTAATATTGATTACAAT+TGG | + | chr5_1:7575598-7575617 | Msa0714770:intron | 15.0% |
!! | ACATGAATACATAAAAAGAA+AGG | - | chr5_1:7574438-7574457 | None:intergenic | 20.0% |
!!! | TTTCTTTTTATGTATTCATG+TGG | + | chr5_1:7574437-7574456 | Msa0714770:intron | 20.0% |
!!! | TTCTTTTTATGTATTCATGT+GGG | + | chr5_1:7574438-7574457 | Msa0714770:intron | 20.0% |
!!! | TAATTTTTTACTCAATGTCT+TGG | + | chr5_1:7574555-7574574 | Msa0714770:intron | 20.0% |
!!! | TATTGTTTGTATGTGTATTT+TGG | + | chr5_1:7574622-7574641 | Msa0714770:intron | 20.0% |
!! | AAGAATAATACTTTGATTCT+TGG | + | chr5_1:7574693-7574712 | Msa0714770:intron | 20.0% |
!!! | CTTGATTTCAATTTTATTTG+TGG | + | chr5_1:7574966-7574985 | Msa0714770:intron | 20.0% |
!! | TAGAATTATTCTTAATGTAG+TGG | + | chr5_1:7575150-7575169 | Msa0714770:intron | 20.0% |
!! | CTATGTAAAAAAATGAAAAG+TGG | - | chr5_1:7575348-7575367 | None:intergenic | 20.0% |
!!! | CACTTTTCATTTTTTTACAT+AGG | + | chr5_1:7575346-7575365 | Msa0714770:intron | 20.0% |
!! | AAAAGTAAAAATGAGTGTAA+GGG | - | chr5_1:7575377-7575396 | None:intergenic | 20.0% |
!! | AAAAAGTAAAAATGAGTGTA+AGG | - | chr5_1:7575378-7575397 | None:intergenic | 20.0% |
!!! | AATTCTTTTACCAATCTATT+AGG | + | chr5_1:7576317-7576336 | Msa0714770:CDS | 20.0% |
!!! | TTTTTTTTGTCATCTAATCT+TGG | - | chr5_1:7576603-7576622 | None:intergenic | 20.0% |
! | GAAAATATTGAATATGGTTG+TGG | - | chr5_1:7574089-7574108 | None:intergenic | 25.0% |
! | TGGTGTGAAAATATTGAATA+TGG | - | chr5_1:7574095-7574114 | None:intergenic | 25.0% |
!! | TCTTTTTATGTATTCATGTG+GGG | + | chr5_1:7574439-7574458 | Msa0714770:intron | 25.0% |
! | TTAATGCAAGCAATAAAACA+TGG | + | chr5_1:7574594-7574613 | Msa0714770:intron | 25.0% |
!!! | TTTTTGTTGGGATTTGATTT+TGG | + | chr5_1:7574777-7574796 | Msa0714770:intron | 25.0% |
!!! | TTTTGTTGGGATTTGATTTT+GGG | + | chr5_1:7574778-7574797 | Msa0714770:intron | 25.0% |
!! | ATTGCATCTTTTAAATTTGC+AGG | + | chr5_1:7574808-7574827 | Msa0714770:intron | 25.0% |
!! | AGTTCATAATTTGTCAGAAA+AGG | + | chr5_1:7574916-7574935 | Msa0714770:CDS | 25.0% |
! | TCTAATTCCAAATTCTAACA+AGG | + | chr5_1:7575077-7575096 | Msa0714770:CDS | 25.0% |
! | AAAAAACACCCTTTAAACTA+TGG | - | chr5_1:7575120-7575139 | None:intergenic | 25.0% |
!!! | ACATCTTCTCAAATTAGTTT+TGG | - | chr5_1:7575486-7575505 | None:intergenic | 25.0% |
! | ATTTGAGAAGATGTAAGTAA+TGG | + | chr5_1:7575492-7575511 | Msa0714770:intron | 25.0% |
! | ACTAATTATCCTTCAAATGT+TGG | - | chr5_1:7575647-7575666 | None:intergenic | 25.0% |
! | AACATTTGAAGGATAATTAG+TGG | + | chr5_1:7575646-7575665 | Msa0714770:intron | 25.0% |
!! | CACTTTTCAATTAAGCAAAT+TGG | + | chr5_1:7575691-7575710 | Msa0714770:intron | 25.0% |
! | ATAGCAAATTCAATCTAACA+AGG | - | chr5_1:7575791-7575810 | None:intergenic | 25.0% |
!!! | TAGATTGAATTTGCTATCAA+AGG | + | chr5_1:7575794-7575813 | Msa0714770:intron | 25.0% |
! | GAGTAGATGTCATATTTAAA+GGG | - | chr5_1:7575979-7575998 | None:intergenic | 25.0% |
! | AGAGTAGATGTCATATTTAA+AGG | - | chr5_1:7575980-7575999 | None:intergenic | 25.0% |
! | GTTGTTAATATATGAAGGAT+AGG | - | chr5_1:7576086-7576105 | None:intergenic | 25.0% |
!! | TCTGTGTTGTTAATATATGA+AGG | - | chr5_1:7576091-7576110 | None:intergenic | 25.0% |
! | AATTTATTGCATTCAATTGC+TGG | - | chr5_1:7576301-7576320 | None:intergenic | 25.0% |
! | TGCGATGTAAATATAATGTT+GGG | - | chr5_1:7576550-7576569 | None:intergenic | 25.0% |
AATGGAACATAACAACAACA+TGG | + | chr5_1:7574132-7574151 | Msa0714770:exon | 30.0% | |
! | GATACATTTAAAGCATGGTT+TGG | - | chr5_1:7574310-7574329 | None:intergenic | 30.0% |
! | AGGAAGATACATTTAAAGCA+TGG | - | chr5_1:7574315-7574334 | None:intergenic | 30.0% |
TTTACTCAATGTCTTGGAAA+AGG | + | chr5_1:7574561-7574580 | Msa0714770:intron | 30.0% | |
!!! | TGTCGTTTTGTTGTTTTTGT+TGG | + | chr5_1:7574764-7574783 | Msa0714770:intron | 30.0% |
!!! | GTCGTTTTGTTGTTTTTGTT+GGG | + | chr5_1:7574765-7574784 | Msa0714770:intron | 30.0% |
!! | TTTGTTGGGATTTGATTTTG+GGG | + | chr5_1:7574779-7574798 | Msa0714770:intron | 30.0% |
! | CATCTTTTAAATTTGCAGGA+GGG | + | chr5_1:7574812-7574831 | Msa0714770:intron | 30.0% |
! | TGGTTATGTAATTTTGCTTG+TGG | + | chr5_1:7574986-7575005 | Msa0714770:intron | 30.0% |
! | ATTTTGCTTGTGGATTTTTG+TGG | + | chr5_1:7574996-7575015 | Msa0714770:intron | 30.0% |
! | TTTTGCTTGTGGATTTTTGT+GGG | + | chr5_1:7574997-7575016 | Msa0714770:intron | 30.0% |
TTATGCACCTTGTTAGAATT+TGG | - | chr5_1:7575087-7575106 | None:intergenic | 30.0% | |
AAAAGATACAAACCTGTACT+TGG | - | chr5_1:7575254-7575273 | None:intergenic | 30.0% | |
ATTCTAAATACTTCTCTCGA+CGG | + | chr5_1:7575515-7575534 | Msa0714770:intron | 30.0% | |
! | ATTCAAATTTAAGACGTGTC+TGG | - | chr5_1:7575564-7575583 | None:intergenic | 30.0% |
ACGTCTTAAATTTGAATCGT+CGG | + | chr5_1:7575567-7575586 | Msa0714770:intron | 30.0% | |
AGAGAATTACCAACATTTGA+AGG | + | chr5_1:7575635-7575654 | Msa0714770:intron | 30.0% | |
! | GGAATATTGTTGTGTTACTA+CGG | + | chr5_1:7575712-7575731 | Msa0714770:intron | 30.0% |
ATAAAGTAAGGAGTTGTCTA+GGG | - | chr5_1:7576011-7576030 | None:intergenic | 30.0% | |
TAGATTGGATGCATAAAGTA+AGG | - | chr5_1:7576023-7576042 | None:intergenic | 30.0% | |
!! | TGTGTTTTTGTTAGGTAGAT+TGG | - | chr5_1:7576038-7576057 | None:intergenic | 30.0% |
AACAACACAGAAACTTCTTT+CGG | + | chr5_1:7576100-7576119 | Msa0714770:CDS | 30.0% | |
! | TCTTTTACCAATCTATTAGG+CGG | + | chr5_1:7576320-7576339 | Msa0714770:CDS | 30.0% |
!! | TGCAAAGTATTGTTAGTAGT+AGG | - | chr5_1:7576475-7576494 | None:intergenic | 30.0% |
CTGCGATGTAAATATAATGT+TGG | - | chr5_1:7576551-7576570 | None:intergenic | 30.0% | |
TATTTACATCGCAGTTAAGT+AGG | + | chr5_1:7576557-7576576 | Msa0714770:CDS | 30.0% | |
TTTGAGAGTTACGAGAAAGT+TGG | - | chr5_1:7574063-7574082 | None:intergenic | 35.0% | |
! | ATTTTTCTCTCTCTTGGTCT+TGG | - | chr5_1:7574115-7574134 | None:intergenic | 35.0% |
AAGACCAAGAGAGAGAAAAA+TGG | + | chr5_1:7574114-7574133 | Msa0714770:exon | 35.0% | |
!! | TGTTCCATTTTTCTCTCTCT+TGG | - | chr5_1:7574121-7574140 | None:intergenic | 35.0% |
AACATAACAACAACATGGCT+CGG | + | chr5_1:7574137-7574156 | Msa0714770:CDS | 35.0% | |
TGGTCTAGAAGTTGAATCAA+AGG | - | chr5_1:7574290-7574309 | None:intergenic | 35.0% | |
AATGTATCTTCCTCTTCTGT+TGG | + | chr5_1:7574322-7574341 | Msa0714770:CDS | 35.0% | |
TGAATATGACTGTGAAAGTG+AGG | + | chr5_1:7574375-7574394 | Msa0714770:CDS | 35.0% | |
AATGTCTTGGAAAAGGTTCT+TGG | + | chr5_1:7574568-7574587 | Msa0714770:intron | 35.0% | |
! | GCATCTTTTAAATTTGCAGG+AGG | + | chr5_1:7574811-7574830 | Msa0714770:intron | 35.0% |
! | ACTGCACTTTTGTCCTATTT+TGG | + | chr5_1:7575280-7575299 | Msa0714770:intron | 35.0% |
! | CTGCACTTTTGTCCTATTTT+GGG | + | chr5_1:7575281-7575300 | Msa0714770:intron | 35.0% |
AAATGAAAAGTGGAGATGCT+GGG | - | chr5_1:7575338-7575357 | None:intergenic | 35.0% | |
AAAATGAAAAGTGGAGATGC+TGG | - | chr5_1:7575339-7575358 | None:intergenic | 35.0% | |
GTAAAAATGAGTGTAAGGGT+GGG | - | chr5_1:7575373-7575392 | None:intergenic | 35.0% | |
AGTAAAAATGAGTGTAAGGG+TGG | - | chr5_1:7575374-7575393 | None:intergenic | 35.0% | |
ATAAGGATCACATACAGTTC+AGG | - | chr5_1:7575830-7575849 | None:intergenic | 35.0% | |
AACTGTATGTGATCCTTATG+AGG | + | chr5_1:7575831-7575850 | Msa0714770:intron | 35.0% | |
! | GCATCTGAAATATCCTCATA+AGG | - | chr5_1:7575847-7575866 | None:intergenic | 35.0% |
CATCCTATGTACTTTCATGA+AGG | + | chr5_1:7575893-7575912 | Msa0714770:CDS | 35.0% | |
! | AAGCCTTCATGAAAGTACAT+AGG | - | chr5_1:7575899-7575918 | None:intergenic | 35.0% |
TAAAGTAAGGAGTTGTCTAG+GGG | - | chr5_1:7576010-7576029 | None:intergenic | 35.0% | |
CATAAAGTAAGGAGTTGTCT+AGG | - | chr5_1:7576012-7576031 | None:intergenic | 35.0% | |
!! | CTCGACAATGTGTTTTTGTT+AGG | - | chr5_1:7576046-7576065 | None:intergenic | 35.0% |
ACAACACAGAAACTTCTTTC+GGG | + | chr5_1:7576101-7576120 | Msa0714770:CDS | 35.0% | |
! | AATACGACATTCAAGTTTGC+AGG | - | chr5_1:7576188-7576207 | None:intergenic | 35.0% |
! | TGATTTGTGAAGCCAATACA+CGG | + | chr5_1:7576257-7576276 | Msa0714770:intron | 35.0% |
GTGAGATTGTGGTATAAAAG+TGG | - | chr5_1:7576395-7576414 | None:intergenic | 35.0% | |
ACAGCTGAAGTTATGAAACA+AGG | - | chr5_1:7576421-7576440 | None:intergenic | 35.0% | |
AGCTGTCAAAGAATTTCAGT+CGG | + | chr5_1:7576435-7576454 | Msa0714770:intron | 35.0% | |
ATCGCAGTTAAGTAGGTAAA+TGG | + | chr5_1:7576564-7576583 | Msa0714770:exon | 35.0% | |
AAGGGATTTCTATGTTTACG+AGG | - | chr5_1:7576682-7576701 | None:intergenic | 35.0% | |
! | GAAATCCCTTAAGCATTTTG+TGG | + | chr5_1:7576692-7576711 | Msa0714770:three_prime_UTR | 35.0% |
CAACACCACAAAATGCTTAA+GGG | - | chr5_1:7576700-7576719 | None:intergenic | 35.0% | |
!! | ACGAGAAAGTTGGTTTGGTT+GGG | - | chr5_1:7574053-7574072 | None:intergenic | 40.0% |
!! | TACGAGAAAGTTGGTTTGGT+TGG | - | chr5_1:7574054-7574073 | None:intergenic | 40.0% |
! | GAGTTACGAGAAAGTTGGTT+TGG | - | chr5_1:7574058-7574077 | None:intergenic | 40.0% |
AGAGATTTCGTCTTGTGAAG+AGG | - | chr5_1:7574179-7574198 | None:intergenic | 40.0% | |
AAGAAGATGAAGCTGAACGA+AGG | - | chr5_1:7574222-7574241 | None:intergenic | 40.0% | |
TCCATTAACCAGCTTCAAGA+TGG | + | chr5_1:7574253-7574272 | Msa0714770:CDS | 40.0% | |
TCCATCTTGAAGCTGGTTAA+TGG | - | chr5_1:7574257-7574276 | None:intergenic | 40.0% | |
AGATCTTTCCATCTTGAAGC+TGG | - | chr5_1:7574264-7574283 | None:intergenic | 40.0% | |
!! | TTCTTGGTCTGTTTCTAGTG+TGG | + | chr5_1:7574709-7574728 | Msa0714770:intron | 40.0% |
TTTAAATTTGCAGGAGGGTG+TGG | + | chr5_1:7574817-7574836 | Msa0714770:intron | 40.0% | |
TTATCAGTCTGTGACACACA+TGG | - | chr5_1:7575183-7575202 | None:intergenic | 40.0% | |
AAGCTCTCAACTCCCAAAAT+AGG | - | chr5_1:7575296-7575315 | None:intergenic | 40.0% | |
!! | TTGATGATGGGCTGAGAATA+GGG | - | chr5_1:7575413-7575432 | None:intergenic | 40.0% |
!! | ATTGATGATGGGCTGAGAAT+AGG | - | chr5_1:7575414-7575433 | None:intergenic | 40.0% |
CAGATGCTGTCATTGAGAAA+TGG | + | chr5_1:7575860-7575879 | Msa0714770:intron | 40.0% | |
TACATTCTCTGCCTTTGTCT+CGG | + | chr5_1:7575918-7575937 | Msa0714770:CDS | 40.0% | |
GAAGGATAGGAAGACATTGA+TGG | - | chr5_1:7576073-7576092 | None:intergenic | 40.0% | |
CAACACAGAAACTTCTTTCG+GGG | + | chr5_1:7576102-7576121 | Msa0714770:CDS | 40.0% | |
! | GACATTCAAGTTTGCAGGAT+TGG | - | chr5_1:7576183-7576202 | None:intergenic | 40.0% |
TTGAGAACCGCCTAATAGAT+TGG | - | chr5_1:7576330-7576349 | None:intergenic | 40.0% | |
AATCTATTAGGCGGTTCTCA+AGG | + | chr5_1:7576329-7576348 | Msa0714770:CDS | 40.0% | |
GCTGTCAAAGAATTTCAGTC+GGG | + | chr5_1:7576436-7576455 | Msa0714770:intron | 40.0% | |
ACTTTGCAAACTTGTGTTGC+CGG | + | chr5_1:7576487-7576506 | Msa0714770:CDS | 40.0% | |
CCAACACCACAAAATGCTTA+AGG | - | chr5_1:7576701-7576720 | None:intergenic | 40.0% | |
! | CCTTAAGCATTTTGTGGTGT+TGG | + | chr5_1:7576698-7576717 | Msa0714770:three_prime_UTR | 40.0% |
!!! | CATTTTGTGGTGTTGGTAAG+TGG | + | chr5_1:7576705-7576724 | Msa0714770:three_prime_UTR | 40.0% |
! | TGAAGCTGGTTAATGGATCC+TGG | - | chr5_1:7574250-7574269 | None:intergenic | 45.0% |
GAAGTTCCAACAAAGTCAGC+TGG | + | chr5_1:7574854-7574873 | Msa0714770:CDS | 45.0% | |
!! | GACTTGTTGAGCAGAGAAGA+AGG | + | chr5_1:7575019-7575038 | Msa0714770:intron | 45.0% |
TTGAGCAGAGAAGAAGGAGT+AGG | + | chr5_1:7575025-7575044 | Msa0714770:intron | 45.0% | |
CTTGGAGCTGAAGCTGTTTA+AGG | - | chr5_1:7575236-7575255 | None:intergenic | 45.0% | |
!! | GAGATGCTGGGTTTAAGTTG+AGG | - | chr5_1:7575326-7575345 | None:intergenic | 45.0% |
ACATACGCCAGTGTCTTACA+AGG | + | chr5_1:7575458-7575477 | Msa0714770:intron | 45.0% | |
!! | TTTGGTGCCTTGTAAGACAC+TGG | - | chr5_1:7575468-7575487 | None:intergenic | 45.0% |
ATGAGTACGGAGTTGAGTGA+AGG | + | chr5_1:7575941-7575960 | Msa0714770:CDS | 45.0% | |
ACGGAGTTGAGTGAAGGAAA+CGG | + | chr5_1:7575947-7575966 | Msa0714770:CDS | 45.0% | |
!!! | GGAGACGTTTTTTCTGTGCT+GGG | - | chr5_1:7576141-7576160 | None:intergenic | 45.0% |
!!! | TGGAGACGTTTTTTCTGTGC+TGG | - | chr5_1:7576142-7576161 | None:intergenic | 45.0% |
ACGTCTCCAACAATCTTCAG+AGG | + | chr5_1:7576153-7576172 | Msa0714770:CDS | 45.0% | |
! | GGCTTACCTCTGAAGATTGT+TGG | - | chr5_1:7576162-7576181 | None:intergenic | 45.0% |
AACAAGTCTTCGCCGTGTAT+TGG | - | chr5_1:7576272-7576291 | None:intergenic | 45.0% | |
! | AAACAAGGAGCGTGAGATTG+TGG | - | chr5_1:7576406-7576425 | None:intergenic | 45.0% |
ACTCATCCCCCAAGTCAAAT+AGG | - | chr5_1:7576745-7576764 | None:intergenic | 45.0% | |
GCTTCATCTTCTTCCATGCC+AGG | + | chr5_1:7574229-7574248 | Msa0714770:CDS | 50.0% | |
! | CTGGTTAATGGATCCTGGCA+TGG | - | chr5_1:7574245-7574264 | None:intergenic | 50.0% |
TCTTCCTCTTCTGTTGGAGC+AGG | + | chr5_1:7574328-7574347 | Msa0714770:CDS | 50.0% | |
! | GAAGCACCAGCTGACTTTGT+TGG | - | chr5_1:7574863-7574882 | None:intergenic | 50.0% |
CAAAGTCAGCTGGTGCTTCT+AGG | + | chr5_1:7574864-7574883 | Msa0714770:CDS | 50.0% | |
ACAGCTTCAGCTCCAAGTAC+AGG | + | chr5_1:7575239-7575258 | Msa0714770:CDS | 50.0% | |
!! | ATGATGGGCTGAGAATAGGG+TGG | - | chr5_1:7575410-7575429 | None:intergenic | 50.0% |
GCCTTTGTCTCGGATGAGTA+CGG | + | chr5_1:7575928-7575947 | Msa0714770:CDS | 50.0% | |
TCCGTACTCATCCGAGACAA+AGG | - | chr5_1:7575932-7575951 | None:intergenic | 50.0% | |
AAGGAGTTGTCTAGGGGATG+AGG | - | chr5_1:7576004-7576023 | None:intergenic | 50.0% | |
CACAGAAACTTCTTTCGGGG+TGG | + | chr5_1:7576105-7576124 | Msa0714770:CDS | 50.0% | |
ACTTCTTTCGGGGTGGAATC+TGG | + | chr5_1:7576112-7576131 | Msa0714770:CDS | 50.0% | |
AGAATTTCAGTCGGGCGCAA+TGG | + | chr5_1:7576444-7576463 | Msa0714770:CDS | 50.0% | |
GGTAAGTGGTAACAAGCCTC+TGG | + | chr5_1:7576719-7576738 | Msa0714770:three_prime_UTR | 50.0% | |
AGCCTCTGGCCTATTTGACT+TGG | + | chr5_1:7576733-7576752 | Msa0714770:three_prime_UTR | 50.0% | |
! | GCCTCTGGCCTATTTGACTT+GGG | + | chr5_1:7576734-7576753 | Msa0714770:three_prime_UTR | 50.0% |
!! | CCTCTGGCCTATTTGACTTG+GGG | + | chr5_1:7576735-7576754 | Msa0714770:three_prime_UTR | 50.0% |
!! | CTCTGGCCTATTTGACTTGG+GGG | + | chr5_1:7576736-7576755 | Msa0714770:three_prime_UTR | 50.0% |
TCCTCTTCTGTTGGAGCAGG+AGG | + | chr5_1:7574331-7574350 | Msa0714770:CDS | 55.0% | |
TCCTCCTGCTCCAACAGAAG+AGG | - | chr5_1:7574335-7574354 | None:intergenic | 55.0% | |
GTTGCCGGAAGAGATCAGTC+AGG | + | chr5_1:7576502-7576521 | Msa0714770:CDS | 55.0% | |
CGCTCCTGACTGATCTCTTC+CGG | - | chr5_1:7576509-7576528 | None:intergenic | 55.0% | |
CGGAAGAGATCAGTCAGGAG+CGG | + | chr5_1:7576507-7576526 | Msa0714770:CDS | 55.0% | |
CCCCAAGTCAAATAGGCCAG+AGG | - | chr5_1:7576738-7576757 | None:intergenic | 55.0% | |
GTTGGAGCAGGAGGACTCAG+TGG | + | chr5_1:7574340-7574359 | Msa0714770:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 7574044 | 7576768 | 7574044 | ID=Msa0714770;Name=Msa0714770 |
chr5_1 | mRNA | 7574044 | 7576768 | 7574044 | ID=Msa0714770-mRNA-1;Parent=Msa0714770;Name=Msa0714770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89|0.83|0.85|1|1|1|7|186|347 |
chr5_1 | exon | 7574044 | 7574396 | 7574044 | ID=Msa0714770-mRNA-1:exon:3121;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7574830 | 7574937 | 7574830 | ID=Msa0714770-mRNA-1:exon:3122;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7575033 | 7575098 | 7575033 | ID=Msa0714770-mRNA-1:exon:3123;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7575195 | 7575260 | 7575195 | ID=Msa0714770-mRNA-1:exon:3124;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7575863 | 7576174 | 7575863 | ID=Msa0714770-mRNA-1:exon:3125;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7576269 | 7576350 | 7576269 | ID=Msa0714770-mRNA-1:exon:3126;Parent=Msa0714770-mRNA-1 |
chr5_1 | exon | 7576437 | 7576768 | 7576437 | ID=Msa0714770-mRNA-1:exon:3127;Parent=Msa0714770-mRNA-1 |
chr5_1 | five_prime_UTR | 7574044 | 7574132 | 7574044 | ID=Msa0714770-mRNA-1:five_prime_utr;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7574133 | 7574396 | 7574133 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7574830 | 7574937 | 7574830 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7575033 | 7575098 | 7575033 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7575195 | 7575260 | 7575195 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7575863 | 7576174 | 7575863 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7576269 | 7576350 | 7576269 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | CDS | 7576437 | 7576582 | 7576437 | ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1 |
chr5_1 | three_prime_UTR | 7576583 | 7576768 | 7576583 | ID=Msa0714770-mRNA-1:three_prime_utr;Parent=Msa0714770-mRNA-1 |
Gene Sequence |
Protein sequence |