AlfalfaGEDB | Msa0714770

M. sativa cultivar zhongmu-4 / Msa0714770

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714770	XP_003611714.1	94.627	335	17	1	14	347	10	344	0.0	604

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714770	sp\|Q9FUA4\|SPT_ARATH	49.099	222	86	5	78	296	160	357	2.97e-46	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714770	G7K6L5	94.627	335	17	1	14	347	10	344	0.0	604

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TFs/TRs:

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Gene ID	Type	Classification
Msa0714770	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0342990	Msa0714770	0.906586	1.266271e-80	-8.615850e-47
Msa0714770	Msa0756840	0.913517	5.614260e-84	-8.615850e-47
Msa0714770	Msa0836170	0.940703	1.482692e-100	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714770	MtrunA17_Chr5g0402031	94.627	335	17	1	14	347	10	344	0.0	604
Msa0714770	MtrunA17_Chr1g0153241	81.319	91	16	1	97	186	73	163	3.48e-42	147
Msa0714770	MtrunA17_Chr1g0193321	57.983	119	49	1	79	197	434	551	1.42e-33	131
Msa0714770	MtrunA17_Chr7g0262691	57.500	120	42	3	72	183	213	331	5.94e-30	119
Msa0714770	MtrunA17_Chr1g0182791	59.813	107	38	3	77	183	289	390	1.78e-29	118
Msa0714770	MtrunA17_Chr3g0095391	48.551	138	60	5	109	243	310	439	1.35e-26	109
Msa0714770	MtrunA17_Chr7g0271251	55.140	107	42	1	104	204	428	534	4.20e-24	103
Msa0714770	MtrunA17_Chr7g0231461	68.182	66	21	0	109	174	298	363	9.81e-23	99.0
Msa0714770	MtrunA17_Chr7g0270871	50.549	91	42	1	88	178	185	272	4.21e-22	95.9
Msa0714770	MtrunA17_Chr4g0074161	36.029	136	67	2	40	172	152	270	6.17e-19	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714770	AT4G36930.1	49.099	222	86	5	78	296	160	357	3.01e-47	164
Msa0714770	AT5G67110.1	52.976	168	56	5	16	181	14	160	2.23e-37	134
Msa0714770	AT1G09530.3	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT1G09530.2	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT1G09530.5	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT1G09530.1	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT1G09530.4	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT1G09530.6	60.177	113	40	3	82	191	311	421	1.82e-31	124
Msa0714770	AT2G20180.7	64.516	93	23	1	80	172	189	271	6.96e-30	118
Msa0714770	AT2G20180.1	64.516	93	23	1	80	172	189	271	6.96e-30	118

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Find 88 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAAACCTGTACT+TGG	0.469577	5_1:-7575251	None:intergenic
AACAACACAGAAACTTCTTT+CGG	0.333925	5_1:+7576100	Msa0714770:CDS
AACAAGTCTTCGCCGTGTAT+TGG	0.455886	5_1:-7576269	None:intergenic
AACATAACAACAACATGGCT+CGG	0.564736	5_1:+7574137	Msa0714770:CDS
AAGAAGATGAAGCTGAACGA+AGG	0.671619	5_1:-7574219	None:intergenic
AAGCCTTCATGAAAGTACAT+AGG	0.613283	5_1:-7575896	None:intergenic
AAGGAGTTGTCTAGGGGATG+AGG	0.512056	5_1:-7576001	None:intergenic
AAGGGATTTCTATGTTTACG+AGG	0.664139	5_1:-7576679	None:intergenic
AATCTATTAGGCGGTTCTCA+AGG	0.591562	5_1:+7576329	Msa0714770:CDS
AATGGAACATAACAACAACA+TGG	0.706557	5_1:+7574132	Msa0714770:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAACATAACAACAACA+TGG	+	chr5_1:7574132-7574151	Msa0714770:exon	30.0%
TTTACTCAATGTCTTGGAAA+AGG	+	chr5_1:7574561-7574580	Msa0714770:intron	30.0%
TTATGCACCTTGTTAGAATT+TGG	-	chr5_1:7575087-7575106	None:intergenic	30.0%
AAAAGATACAAACCTGTACT+TGG	-	chr5_1:7575254-7575273	None:intergenic	30.0%
ATTCTAAATACTTCTCTCGA+CGG	+	chr5_1:7575515-7575534	Msa0714770:intron	30.0%
ACGTCTTAAATTTGAATCGT+CGG	+	chr5_1:7575567-7575586	Msa0714770:intron	30.0%
AGAGAATTACCAACATTTGA+AGG	+	chr5_1:7575635-7575654	Msa0714770:intron	30.0%
ATAAAGTAAGGAGTTGTCTA+GGG	-	chr5_1:7576011-7576030	None:intergenic	30.0%
TAGATTGGATGCATAAAGTA+AGG	-	chr5_1:7576023-7576042	None:intergenic	30.0%
AACAACACAGAAACTTCTTT+CGG	+	chr5_1:7576100-7576119	Msa0714770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	7574044	7576768	7574044	ID=Msa0714770;Name=Msa0714770
chr5_1	mRNA	7574044	7576768	7574044	ID=Msa0714770-mRNA-1;Parent=Msa0714770;Name=Msa0714770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89\|0.83\|0.85\|1\|1\|1\|7\|186\|347
chr5_1	exon	7574044	7574396	7574044	ID=Msa0714770-mRNA-1:exon:3121;Parent=Msa0714770-mRNA-1
chr5_1	exon	7574830	7574937	7574830	ID=Msa0714770-mRNA-1:exon:3122;Parent=Msa0714770-mRNA-1
chr5_1	exon	7575033	7575098	7575033	ID=Msa0714770-mRNA-1:exon:3123;Parent=Msa0714770-mRNA-1
chr5_1	exon	7575195	7575260	7575195	ID=Msa0714770-mRNA-1:exon:3124;Parent=Msa0714770-mRNA-1
chr5_1	exon	7575863	7576174	7575863	ID=Msa0714770-mRNA-1:exon:3125;Parent=Msa0714770-mRNA-1
chr5_1	exon	7576269	7576350	7576269	ID=Msa0714770-mRNA-1:exon:3126;Parent=Msa0714770-mRNA-1
chr5_1	exon	7576437	7576768	7576437	ID=Msa0714770-mRNA-1:exon:3127;Parent=Msa0714770-mRNA-1
chr5_1	five_prime_UTR	7574044	7574132	7574044	ID=Msa0714770-mRNA-1:five_prime_utr;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7574133	7574396	7574133	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7574830	7574937	7574830	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7575033	7575098	7575033	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7575195	7575260	7575195	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7575863	7576174	7575863	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7576269	7576350	7576269	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	CDS	7576437	7576582	7576437	ID=Msa0714770-mRNA-1:cds;Parent=Msa0714770-mRNA-1
chr5_1	three_prime_UTR	7576583	7576768	7576583	ID=Msa0714770-mRNA-1:three_prime_utr;Parent=Msa0714770-mRNA-1

Gene Sequence

>Msa0714770

ATGGAACATAACAACAACATGGCTCGGTTTGACAAAAACATGTCCTCTTCACAAGACGAAATCTCTCTTTTTCTTCATCAAATTCTCCTTCGTTCAGCTTCATCTTCTTCCATGCCAGGATCCATTAACCAGCTTCAAGATGGAAAGATCTCAGCCTTTGATTCAACTTCTAGACCAAACCATGCTTTAAATGTATCTTCCTCTTCTGTTGGAGCAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTGGAAGCATTGATTGAAGAAGTTCCAACAAAGTCAGCTGGTGCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAATTTGTCAGAAAAGAGAAGAAGGAGTAGGATTAATGAGAAAATGAAAGCTTTACAAAATCTAATTCCAAATTCTAACAAGACTGATAAAGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGCTTACATTCTCTGCCTTTGTCTCGGATGAGTACGGAGTTGAGTGAAGGAAACGGTTCTAACCCTTTAAATATGACATCTACTCTGCCTCATCCCCTAGACAACTCCTTACTTTATGCATCCAATCTACCTAACAAAAACACATTGTCGAGTCAGCCATCAATGTCTTCCTATCCTTCATATATTAACAACACAGAAACTTCTTTCGGGGTGGAATCTGGAATCCCAGCACAGAAAAAACGTCTCCAACAATCTTCAGAGCCAATACACGGCGAAGACTTGTTGCAGCACCAGCAATTGAATGCAATAAATTCTTTTACCAATCTATTAGGCGGTTCTCAAGCTGTCAAAGAATTTCAGTCGGGCGCAATGGCTACACCTACTACTAACAATACTTTGCAAACTTGTGTTGCCGGAAGAGATCAGTCAGGAGCGGTCATGAGAAATAGTGAGCCCAACATTATATTTACATCGCAGTTAAGTAGGTAA

Protein sequence

>Msa0714770

MEHNNNMARFDKNMSSSQDEISLFLHQILLRSASSSSMPGSINQLQDGKISAFDSTSRPNHALNVSSSSVGAGGLSGNDTDEYDCESEEGVEALIEEVPTKSAGASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNGSNPLNMTSTLPHPLDNSLLYASNLPNKNTLSSQPSMSSYPSYINNTETSFGVESGIPAQKKRLQQSSEPIHGEDLLQHQQLNAINSFTNLLGGSQAVKEFQSGAMATPTTNNTLQTCVAGRDQSGAVMRNSEPNIIFTSQLSR*