Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715490 | XP_003611826.1 | 74.427 | 262 | 17 | 2 | 1 | 212 | 1 | 262 | 7.00e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715490 | sp|D7SSD8|MJE1_VITVI | 45.914 | 257 | 87 | 3 | 6 | 211 | 5 | 260 | 5.74e-79 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715490 | A0A072UD42 | 74.427 | 262 | 17 | 2 | 1 | 212 | 1 | 262 | 3.35e-135 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715490 | Msa0798370 | 0.812530 | 4.047558e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715490 | MtrunA17_Chr5g0402841 | 74.427 | 262 | 17 | 2 | 1 | 212 | 1 | 262 | 6.44e-139 | 389 |
| Msa0715490 | MtrunA17_Chr5g0402851 | 72.624 | 263 | 21 | 2 | 1 | 212 | 1 | 263 | 9.36e-137 | 383 |
| Msa0715490 | MtrunA17_Chr5g0402871 | 68.359 | 256 | 30 | 2 | 8 | 212 | 5 | 260 | 1.98e-123 | 349 |
| Msa0715490 | MtrunA17_Chr8g0336391 | 46.275 | 255 | 86 | 3 | 8 | 211 | 27 | 281 | 2.75e-71 | 218 |
| Msa0715490 | MtrunA17_Chr8g0336441 | 45.455 | 253 | 90 | 4 | 7 | 211 | 26 | 278 | 3.17e-70 | 215 |
| Msa0715490 | MtrunA17_Chr8g0336411 | 45.098 | 255 | 90 | 3 | 7 | 211 | 27 | 281 | 1.38e-69 | 214 |
| Msa0715490 | MtrunA17_Chr3g0104871 | 43.478 | 253 | 95 | 3 | 7 | 211 | 18 | 270 | 3.29e-67 | 207 |
| Msa0715490 | MtrunA17_Chr8g0336401 | 44.402 | 259 | 90 | 4 | 7 | 211 | 26 | 284 | 3.67e-66 | 205 |
| Msa0715490 | MtrunA17_Chr8g0336381 | 40.310 | 258 | 102 | 4 | 6 | 211 | 5 | 262 | 2.08e-60 | 189 |
| Msa0715490 | MtrunA17_Chr8g0374141 | 38.550 | 262 | 108 | 6 | 1 | 211 | 43 | 302 | 1.93e-56 | 181 |
| Msa0715490 | MtrunA17_Chr5g0402901 | 35.433 | 254 | 114 | 5 | 6 | 211 | 10 | 261 | 8.06e-44 | 147 |
| Msa0715490 | MtrunA17_Chr5g0402881 | 34.127 | 252 | 116 | 4 | 8 | 211 | 29 | 278 | 1.22e-41 | 142 |
| Msa0715490 | MtrunA17_Chr7g0219561 | 34.940 | 249 | 115 | 3 | 7 | 208 | 123 | 371 | 1.06e-39 | 139 |
| Msa0715490 | MtrunA17_Chr3g0077351 | 31.200 | 250 | 124 | 3 | 7 | 208 | 93 | 342 | 4.67e-36 | 129 |
| Msa0715490 | MtrunA17_Chr5g0428471 | 31.801 | 261 | 121 | 6 | 3 | 211 | 25 | 280 | 7.82e-32 | 117 |
| Msa0715490 | MtrunA17_Chr3g0128581 | 31.496 | 254 | 118 | 6 | 6 | 208 | 34 | 282 | 6.60e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715490 | AT2G23610.2 | 47.442 | 215 | 104 | 3 | 4 | 211 | 5 | 217 | 4.54e-68 | 208 |
| Msa0715490 | AT2G23610.1 | 40.000 | 260 | 102 | 5 | 4 | 211 | 5 | 262 | 1.49e-61 | 193 |
| Msa0715490 | AT2G23620.1 | 39.147 | 258 | 103 | 5 | 6 | 211 | 7 | 262 | 1.56e-59 | 188 |
| Msa0715490 | AT2G23600.1 | 39.147 | 258 | 103 | 6 | 6 | 211 | 7 | 262 | 3.56e-56 | 179 |
| Msa0715490 | AT2G23600.2 | 39.147 | 258 | 103 | 6 | 6 | 211 | 22 | 277 | 4.55e-56 | 179 |
| Msa0715490 | AT3G50440.1 | 37.255 | 255 | 106 | 4 | 9 | 211 | 22 | 274 | 6.77e-54 | 174 |
| Msa0715490 | AT2G23560.1 | 38.224 | 259 | 112 | 4 | 1 | 211 | 1 | 259 | 8.57e-54 | 173 |
| Msa0715490 | AT4G37150.1 | 37.402 | 254 | 110 | 4 | 7 | 211 | 2 | 255 | 2.54e-53 | 172 |
| Msa0715490 | AT2G23590.1 | 36.400 | 250 | 114 | 4 | 5 | 211 | 24 | 271 | 1.43e-51 | 167 |
| Msa0715490 | AT2G23550.1 | 37.023 | 262 | 114 | 5 | 1 | 211 | 1 | 262 | 1.06e-48 | 160 |
| Msa0715490 | AT2G23550.4 | 37.023 | 262 | 114 | 5 | 1 | 211 | 8 | 269 | 1.41e-48 | 160 |
| Msa0715490 | AT2G23580.1 | 36.364 | 264 | 113 | 4 | 1 | 211 | 1 | 262 | 3.11e-48 | 159 |
| Msa0715490 | AT2G23550.2 | 35.294 | 255 | 99 | 5 | 1 | 211 | 1 | 233 | 3.76e-42 | 142 |
| Msa0715490 | AT5G10300.1 | 32.558 | 258 | 122 | 4 | 4 | 211 | 2 | 257 | 8.72e-41 | 139 |
| Msa0715490 | AT2G23600.3 | 55.140 | 107 | 41 | 2 | 6 | 105 | 22 | 128 | 2.03e-38 | 131 |
| Msa0715490 | AT3G29770.1 | 33.600 | 250 | 117 | 4 | 7 | 208 | 137 | 385 | 3.66e-38 | 136 |
| Msa0715490 | AT1G26360.1 | 32.411 | 253 | 123 | 5 | 3 | 208 | 185 | 436 | 3.39e-37 | 134 |
| Msa0715490 | AT4G37140.1 | 44.094 | 127 | 65 | 1 | 7 | 127 | 2 | 128 | 4.51e-35 | 121 |
| Msa0715490 | AT1G69240.1 | 31.102 | 254 | 125 | 5 | 4 | 208 | 184 | 436 | 1.53e-34 | 127 |
| Msa0715490 | AT1G33990.1 | 29.762 | 252 | 129 | 3 | 5 | 208 | 94 | 345 | 2.20e-33 | 122 |
| Msa0715490 | AT4G09900.1 | 28.800 | 250 | 130 | 3 | 7 | 208 | 97 | 346 | 1.71e-32 | 120 |
| Msa0715490 | AT5G58310.1 | 29.502 | 261 | 125 | 4 | 6 | 210 | 3 | 260 | 1.81e-32 | 118 |
| Msa0715490 | AT2G23580.2 | 49.107 | 112 | 50 | 1 | 1 | 105 | 1 | 112 | 5.84e-31 | 112 |
| Msa0715490 | AT5G10300.2 | 47.222 | 108 | 51 | 1 | 4 | 105 | 2 | 109 | 1.24e-30 | 112 |
| Msa0715490 | AT4G16690.1 | 30.769 | 247 | 116 | 5 | 8 | 204 | 12 | 253 | 1.44e-30 | 113 |
| Msa0715490 | AT2G23550.3 | 47.321 | 112 | 52 | 1 | 1 | 105 | 8 | 119 | 1.13e-27 | 104 |
| Msa0715490 | AT3G10870.1 | 31.746 | 252 | 120 | 4 | 8 | 208 | 20 | 270 | 2.55e-27 | 105 |
| Msa0715490 | AT4G37140.2 | 46.154 | 91 | 43 | 1 | 7 | 91 | 2 | 92 | 3.59e-26 | 97.4 |
| Msa0715490 | AT2G23570.1 | 33.708 | 178 | 74 | 4 | 78 | 211 | 1 | 178 | 1.38e-20 | 85.5 |
| Msa0715490 | AT3G29770.2 | 44.643 | 56 | 31 | 0 | 8 | 63 | 138 | 193 | 2.00e-12 | 65.1 |
Find 45 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTTTGTTAAAATCTTC+TGG | 0.251172 | 5_1:-8533964 | Msa0715490:CDS |
| ACACTAGACATGGCTGCTTC+TGG | 0.272663 | 5_1:-8533928 | Msa0715490:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5_1:-8534021 | Msa0715490:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5_1:+8533898 | Msa0715480:three_prime_UTR |
| CACTAGACATGGCTGCTTCT+GGG | 0.371034 | 5_1:-8533927 | Msa0715490:CDS |
| AGATATGCACAAAGCTCTTT+CGG | 0.381008 | 5_1:+8528684 | Msa0715480:three_prime_UTR |
| GCGTTGACACTTTGTCTTGT+TGG | 0.421929 | 5_1:+8528796 | Msa0715480:three_prime_UTR |
| GCTCATGCACTTGCTTTGGA+TGG | 0.429708 | 5_1:+8533902 | Msa0715480:three_prime_UTR |
| AGAGTCACAAAAGATAACTA+TGG | 0.439838 | 5_1:-8528846 | Msa0715490:CDS |
| CCCTTGCAATGTCATTACTA+AGG | 0.454789 | 5_1:-8528914 | Msa0715490:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5_1:-8533996 | Msa0715490:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5_1:+8528741 | Msa0715480:three_prime_UTR |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5_1:-8528897 | Msa0715490:CDS |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5_1:-8533989 | Msa0715490:CDS |
| TTGGCACACAATGAACACTT+TGG | 0.501510 | 5_1:+8528815 | Msa0715480:three_prime_UTR |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5_1:-8534009 | Msa0715490:CDS |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5_1:-8528905 | Msa0715490:CDS |
| GCCTTAGTAATGACATTGCA+AGG | 0.521219 | 5_1:+8528913 | Msa0715480:three_prime_UTR |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5_1:-8534002 | Msa0715490:CDS |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5_1:-8534008 | Msa0715490:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5_1:-8533808 | Msa0715490:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5_1:-8533899 | Msa0715490:CDS |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5_1:+8528891 | Msa0715480:three_prime_UTR |
| ATATTCAAGAAGGATAGATC+AGG | 0.541955 | 5_1:+8533703 | Msa0715480:three_prime_UTR |
| AGGATAACTCTCTGGTCTTG+TGG | 0.547320 | 5_1:+8533826 | Msa0715480:three_prime_UTR |
| CAACGGTTCATAATAATATG+TGG | 0.551210 | 5_1:+8533870 | Msa0715480:three_prime_UTR |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5_1:+8533765 | Msa0715480:three_prime_UTR |
| CTCTTGGAATATATTCAAGA+AGG | 0.571286 | 5_1:+8533693 | Msa0715480:three_prime_UTR |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5_1:-8533805 | Msa0715490:CDS |
| GACCCACTAGGATAACTCTC+TGG | 0.572600 | 5_1:+8533818 | Msa0715480:three_prime_UTR |
| CGAAGTCACAACACTAGACA+TGG | 0.578644 | 5_1:-8533938 | Msa0715490:CDS |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5_1:-8533782 | Msa0715490:CDS |
| GACCAGAGAGTTATCCTAGT+GGG | 0.595402 | 5_1:-8533820 | Msa0715490:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5_1:+8528742 | Msa0715480:three_prime_UTR |
| CTTCTTGAATATATTCCAAG+AGG | 0.610223 | 5_1:-8533692 | Msa0715490:intron |
| AAGAAGGATAGATCAGGAGA+AGG | 0.614120 | 5_1:+8533709 | Msa0715480:three_prime_UTR |
| TCTTTCGGTTTAGAGAACAT+AGG | 0.623701 | 5_1:+8528699 | Msa0715480:three_prime_UTR |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5_1:-8533788 | Msa0715490:CDS |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5_1:+8533806 | Msa0715480:three_prime_UTR |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5_1:-8533804 | Msa0715490:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5_1:+8533992 | Msa0715480:three_prime_UTR |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5_1:+8528706 | Msa0715480:three_prime_UTR |
| CCTTAGTAATGACATTGCAA+GGG | 0.667410 | 5_1:+8528914 | Msa0715480:three_prime_UTR |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5_1:-8534007 | Msa0715490:CDS |
| AGACCAGAGAGTTATCCTAG+TGG | 0.747538 | 5_1:-8533821 | Msa0715490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATAATTTAAAAAG+TGG | + | chr5_1:8529266-8529285 | Msa0715480:intron | 10.0% |
| !! | AAAAAAGTTTGTATAATAAA+TGG | - | chr5_1:8529673-8529692 | Msa0715490:intron | 10.0% |
| !! | AAAAAGTTTGTATAATAAAT+GGG | - | chr5_1:8529674-8529693 | Msa0715490:intron | 10.0% |
| !! | TTAATAAAATTAATGATTGT+TGG | - | chr5_1:8529728-8529747 | Msa0715490:intron | 10.0% |
| !! | AGTATTAATTAACATATTAA+AGG | + | chr5_1:8529804-8529823 | Msa0715480:intron | 10.0% |
| !!! | CAATATTTTATTTAATCAAA+TGG | - | chr5_1:8530448-8530467 | Msa0715490:intron | 10.0% |
| !!! | AAAAATTGATTTTGAATAAA+AGG | - | chr5_1:8530752-8530771 | Msa0715490:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr5_1:8531177-8531196 | Msa0715490:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr5_1:8531178-8531197 | Msa0715490:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr5_1:8531577-8531596 | Msa0715480:intron | 10.0% |
| !!! | ATATTTTTTAACTAATGTAT+AGG | + | chr5_1:8531683-8531702 | Msa0715480:intron | 10.0% |
| !! | TATACATTAGTTAAAAAATA+TGG | - | chr5_1:8531682-8531701 | Msa0715490:intron | 10.0% |
| !!! | ATTTGATTTTTAGAATTTTT+AGG | - | chr5_1:8533235-8533254 | Msa0715490:intron | 10.0% |
| !!! | TTTTTTTTTTTTCTTTTGAG+AGG | - | chr5_1:8529082-8529101 | Msa0715490:intron | 15.0% |
| !! | AAATGCAAAAATAATATAGT+TGG | - | chr5_1:8529551-8529570 | Msa0715490:intron | 15.0% |
| !! | AATGCAAAAATAATATAGTT+GGG | - | chr5_1:8529552-8529571 | Msa0715490:intron | 15.0% |
| !! | ATATTAAAGGTAAATATTGT+AGG | + | chr5_1:8529791-8529810 | Msa0715480:intron | 15.0% |
| !! | AATTAACAAAAAAACACAAA+AGG | - | chr5_1:8530069-8530088 | Msa0715490:intron | 15.0% |
| !!! | TTTTTTTCAATATTCTATAG+TGG | + | chr5_1:8530310-8530329 | Msa0715480:intron | 15.0% |
| !! | ATTAATTACATCCATAATTT+GGG | + | chr5_1:8530418-8530437 | Msa0715480:intron | 15.0% |
| !! | AATTAATTACATCCATAATT+TGG | + | chr5_1:8530419-8530438 | Msa0715480:intron | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr5_1:8531142-8531161 | Msa0715480:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr5_1:8531179-8531198 | Msa0715490:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr5_1:8531242-8531261 | Msa0715490:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr5_1:8531243-8531262 | Msa0715490:intron | 15.0% |
| !!! | GACATTTTTTTTTAGAAAAT+GGG | - | chr5_1:8531312-8531331 | Msa0715490:intron | 15.0% |
| !!! | TATCATTTAACCTAATATTT+TGG | + | chr5_1:8532164-8532183 | Msa0715480:intron | 15.0% |
| !!! | AAAATGCTATTTTAAAAGTT+TGG | + | chr5_1:8532225-8532244 | Msa0715480:intron | 15.0% |
| !!! | AAAACTAATGCAAATTTTTT+CGG | + | chr5_1:8533215-8533234 | Msa0715480:intron | 15.0% |
| !!! | TTTTTATGATTTTATTTGAC+AGG | - | chr5_1:8533263-8533282 | Msa0715490:intron | 15.0% |
| !!! | AAAATTCAAAACTTTTGAAA+TGG | - | chr5_1:8533331-8533350 | Msa0715490:intron | 15.0% |
| !!! | AAATTCAAAACTTTTGAAAT+GGG | - | chr5_1:8533332-8533351 | Msa0715490:intron | 15.0% |
| !!! | AGCATTTTTAAAAATTTAAC+AGG | - | chr5_1:8533452-8533471 | Msa0715490:intron | 15.0% |
| !!! | GCATTTTTAAAAATTTAACA+GGG | - | chr5_1:8533453-8533472 | Msa0715490:intron | 15.0% |
| !! | ATATGAGAAAGATCAAAATA+AGG | + | chr5_1:8529040-8529059 | Msa0715480:intron | 20.0% |
| !! | ATGCAAAAATAATATAGTTG+GGG | - | chr5_1:8529553-8529572 | Msa0715490:intron | 20.0% |
| !! | TTACACTTTATATACTTTAG+AGG | + | chr5_1:8529707-8529726 | Msa0715480:intron | 20.0% |
| !! | TTGATAAAGTGAATTAACTA+TGG | + | chr5_1:8529829-8529848 | Msa0715480:intron | 20.0% |
| !! | TTAAGTAGAATCAATTCTAA+AGG | - | chr5_1:8530864-8530883 | Msa0715490:intron | 20.0% |
| !!! | TATTTTATCTAAGTCATTAG+AGG | - | chr5_1:8531016-8531035 | Msa0715490:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr5_1:8531143-8531162 | Msa0715480:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr5_1:8531202-8531221 | Msa0715490:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr5_1:8531275-8531294 | Msa0715490:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr5_1:8531276-8531295 | Msa0715490:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr5_1:8531311-8531330 | Msa0715490:intron | 20.0% |
| !! | TTAAAAATGAAGATAAAGAG+TGG | - | chr5_1:8532010-8532029 | Msa0715490:intron | 20.0% |
| !!! | AACTTTTAAAGTATCACTTT+TGG | + | chr5_1:8532455-8532474 | Msa0715480:intron | 20.0% |
| !!! | AAAGTGATACTTTAAAAGTT+TGG | - | chr5_1:8532455-8532474 | Msa0715490:intron | 20.0% |
| !! | TTCACAAATTGAAACTATAA+CGG | + | chr5_1:8532636-8532655 | Msa0715480:intron | 20.0% |
| !!! | TTTTGGGAAGAAAAAAAATA+GGG | + | chr5_1:8532696-8532715 | Msa0715480:intron | 20.0% |
| !!! | ATTTTGGGAAGAAAAAAAAT+AGG | + | chr5_1:8532697-8532716 | Msa0715480:intron | 20.0% |
| !!! | TTTTTTTCTTCTGATTTTCT+AGG | + | chr5_1:8533074-8533093 | Msa0715480:intron | 20.0% |
| !!! | GGATTTTATAATCTCAAATA+TGG | + | chr5_1:8533386-8533405 | Msa0715480:intron | 20.0% |
| !! | TATAAAATCCAAATTCACTT+TGG | - | chr5_1:8533396-8533415 | Msa0715490:intron | 20.0% |
| !! | GTTACTTTGTTAAAATCTTC+TGG | - | chr5_1:8528731-8528750 | Msa0715490:CDS | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5_1:8528933-8528952 | Msa0715480:intron | 25.0% |
| ! | TTAATTGTTATCATCAACTC+TGG | - | chr5_1:8529114-8529133 | Msa0715490:intron | 25.0% |
| ! | ATAGGTGATATATTCTTTCA+TGG | - | chr5_1:8529454-8529473 | Msa0715490:intron | 25.0% |
| ! | TAGGTGATATATTCTTTCAT+GGG | - | chr5_1:8529455-8529474 | Msa0715490:intron | 25.0% |
| ! | TTTGTATAATAAATGGGCAA+GGG | - | chr5_1:8529680-8529699 | Msa0715490:intron | 25.0% |
| ! | TCTAGTTGTTTGATTAAGAT+TGG | + | chr5_1:8529865-8529884 | Msa0715480:intron | 25.0% |
| !! | AACAACTAGAAATCTTTTGA+CGG | - | chr5_1:8529875-8529894 | Msa0715490:intron | 25.0% |
| ! | CATCTTATCTTATAGTAACA+AGG | - | chr5_1:8529979-8529998 | Msa0715490:intron | 25.0% |
| !! | ATGTGTAAAACATGTCTTTT+TGG | + | chr5_1:8530248-8530267 | Msa0715480:intron | 25.0% |
| !! | ATTTAATTTCATCCACAGTT+GGG | - | chr5_1:8530333-8530352 | Msa0715490:intron | 25.0% |
| ! | CTAAAATTAGAATAATGACG+TGG | - | chr5_1:8530359-8530378 | Msa0715490:intron | 25.0% |
| ! | GGTAGTAACAAACATAATAA+AGG | + | chr5_1:8531114-8531133 | Msa0715480:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr5_1:8531201-8531220 | Msa0715490:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr5_1:8531741-8531760 | Msa0715490:intron | 25.0% |
| ! | CCTCACAATAGTTAAAAAAA+AGG | + | chr5_1:8532041-8532060 | Msa0715480:intron | 25.0% |
| !!! | CCTTTTTTTTAACTATTGTG+AGG | - | chr5_1:8532038-8532057 | Msa0715490:intron | 25.0% |
| !!! | CGAAACTAGCTTAATTTTTA+AGG | + | chr5_1:8532070-8532089 | Msa0715480:intron | 25.0% |
| !! | AATTTAAAATGCGAAGTACT+TGG | - | chr5_1:8532097-8532116 | Msa0715490:intron | 25.0% |
| !!! | TTGAAAGCATCCAAAATATT+AGG | - | chr5_1:8532151-8532170 | Msa0715490:intron | 25.0% |
| ! | CGGTAATTGAAGAAAAAATA+TGG | + | chr5_1:8532616-8532635 | Msa0715480:intron | 25.0% |
| !! | TATAATCCGAATGGTATTTT+GGG | + | chr5_1:8532712-8532731 | Msa0715480:intron | 25.0% |
| !! | ATATAATCCGAATGGTATTT+TGG | + | chr5_1:8532713-8532732 | Msa0715480:intron | 25.0% |
| ! | TTCGAATTATATAATCCGAA+TGG | + | chr5_1:8532721-8532740 | Msa0715480:intron | 25.0% |
| !! | AAAAGAGTTTTTCTCCAATT+CGG | - | chr5_1:8532766-8532785 | Msa0715490:intron | 25.0% |
| !!! | AACTGTTTTTCCCTTAAAAA+GGG | + | chr5_1:8532872-8532891 | Msa0715480:intron | 25.0% |
| !! | TAATTTGTACTGATACAGTT+CGG | + | chr5_1:8532908-8532927 | Msa0715480:intron | 25.0% |
| !! | ATGAAATTTTGGATTTTGAG+GGG | + | chr5_1:8533142-8533161 | Msa0715480:intron | 25.0% |
| !! | GATGAAATTTTGGATTTTGA+GGG | + | chr5_1:8533143-8533162 | Msa0715480:intron | 25.0% |
| !! | ATGTCTAAACGATGAAATTT+TGG | + | chr5_1:8533153-8533172 | Msa0715480:intron | 25.0% |
| !! | AAATTCACTTTGGATGTTTT+CGG | - | chr5_1:8533406-8533425 | Msa0715490:intron | 25.0% |
| !! | ATTTTATAACCCAAAAAGCT+GGG | - | chr5_1:8533429-8533448 | Msa0715490:intron | 25.0% |
| ! | TATCGTCAAACATTATCTTT+GGG | + | chr5_1:8533560-8533579 | Msa0715480:intron | 25.0% |
| CAACGGTTCATAATAATATG+TGG | + | chr5_1:8528828-8528847 | Msa0715480:three_prime_UTR | 30.0% | |
| ! | AACCGTTGATTGAATTTCTA+AGG | - | chr5_1:8528840-8528859 | Msa0715490:CDS | 30.0% |
| GACCTTAGAAATTCAATCAA+CGG | + | chr5_1:8528845-8528864 | Msa0715480:three_prime_UTR | 30.0% | |
| ATATTCAAGAAGGATAGATC+AGG | + | chr5_1:8528995-8529014 | Msa0715480:intron | 30.0% | |
| CTCTTGGAATATATTCAAGA+AGG | + | chr5_1:8529005-8529024 | Msa0715480:intron | 30.0% | |
| CTTCTTGAATATATTCCAAG+AGG | - | chr5_1:8529003-8529022 | Msa0715490:intron | 30.0% | |
| TTTGTCATCAAATGATTGTG+AGG | - | chr5_1:8529419-8529438 | Msa0715490:intron | 30.0% | |
| TTGTCATCAAATGATTGTGA+GGG | - | chr5_1:8529420-8529439 | Msa0715490:intron | 30.0% | |
| GTTTGTATAATAAATGGGCA+AGG | - | chr5_1:8529679-8529698 | Msa0715490:intron | 30.0% | |
| !! | TCTTTGAAATATGAACCAAG+TGG | - | chr5_1:8530166-8530185 | Msa0715490:intron | 30.0% |
| ! | CATTTAATTTCATCCACAGT+TGG | - | chr5_1:8530332-8530351 | Msa0715490:intron | 30.0% |
| ! | ATTTTGTGCCCATGAAAATT+TGG | - | chr5_1:8530607-8530626 | Msa0715490:intron | 30.0% |
| CTACTTAAAGCTCAAATTTG+TGG | + | chr5_1:8530852-8530871 | Msa0715480:intron | 30.0% | |
| ! | AGAATTGATTCTGACATGTT+TGG | + | chr5_1:8530915-8530934 | Msa0715480:intron | 30.0% |
| !!! | CTTCTTTTTTTCTCACTCAA+GGG | + | chr5_1:8530968-8530987 | Msa0715480:intron | 30.0% |
| !!! | TCTTCTTTTTTTCTCACTCA+AGG | + | chr5_1:8530969-8530988 | Msa0715480:intron | 30.0% |
| TGAGTGAGAAAAAAAGAAGA+AGG | - | chr5_1:8530969-8530988 | Msa0715490:intron | 30.0% | |
| ATTGTTTATTGCCTCATTAG+AGG | + | chr5_1:8531074-8531093 | Msa0715480:intron | 30.0% | |
| TCTAATGAGGCAATAAACAA+TGG | - | chr5_1:8531073-8531092 | Msa0715490:intron | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr5_1:8531138-8531157 | Msa0715480:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr5_1:8531186-8531205 | Msa0715490:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr5_1:8531289-8531308 | Msa0715490:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr5_1:8531290-8531309 | Msa0715490:intron | 30.0% |
| TCGTTTATCTCTATCACAAA+TGG | - | chr5_1:8531379-8531398 | Msa0715490:intron | 30.0% | |
| CGTTTATCTCTATCACAAAT+GGG | - | chr5_1:8531380-8531399 | Msa0715490:intron | 30.0% | |
| GTTTATCTCTATCACAAATG+GGG | - | chr5_1:8531381-8531400 | Msa0715490:intron | 30.0% | |
| ! | ATTTGAGATACGTTCTTCAT+AGG | + | chr5_1:8531431-8531450 | Msa0715480:intron | 30.0% |
| CGTCTTCAAATATCATAGTA+GGG | + | chr5_1:8531454-8531473 | Msa0715480:intron | 30.0% | |
| TCGTCTTCAAATATCATAGT+AGG | + | chr5_1:8531455-8531474 | Msa0715480:intron | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr5_1:8531519-8531538 | Msa0715480:intron | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr5_1:8531723-8531742 | Msa0715490:intron | 30.0% | |
| CATAACATACACTTGAGATA+TGG | + | chr5_1:8531777-8531796 | Msa0715480:intron | 30.0% | |
| !! | CTATTTCTGATACAAAGTAC+AGG | + | chr5_1:8531822-8531841 | Msa0715480:intron | 30.0% |
| ATTGATGTTAGTATATGCAC+TGG | + | chr5_1:8532305-8532324 | Msa0715480:intron | 30.0% | |
| ! | GTGATACTTTAAAAGTTTGG+AGG | - | chr5_1:8532458-8532477 | Msa0715490:intron | 30.0% |
| ! | CTTCCACAAATTGACAATTT+TGG | + | chr5_1:8532485-8532504 | Msa0715480:intron | 30.0% |
| !! | GTTGCTTTGAACTTTTCATA+GGG | + | chr5_1:8532594-8532613 | Msa0715480:intron | 30.0% |
| TTTCTTCCCAAAATACCATT+CGG | - | chr5_1:8532703-8532722 | Msa0715490:intron | 30.0% | |
| TCGGATTATAAAATCCGAAT+TGG | + | chr5_1:8532783-8532802 | Msa0715480:intron | 30.0% | |
| TAATCCGAAAACCTCAAAAT+AGG | - | chr5_1:8532795-8532814 | Msa0715490:intron | 30.0% | |
| AATCCGAAAACCTCAAAATA+GGG | - | chr5_1:8532796-8532815 | Msa0715490:intron | 30.0% | |
| !! | CTTAAAAAGGGGTTTTTAAG+GGG | + | chr5_1:8532860-8532879 | Msa0715480:intron | 30.0% |
| ! | CCTTAAAAAGGGGTTTTTAA+GGG | + | chr5_1:8532861-8532880 | Msa0715480:intron | 30.0% |
| ! | CCTTAAAAACCCCTTTTTAA+GGG | - | chr5_1:8532859-8532878 | Msa0715490:intron | 30.0% |
| !! | ACTGTTTTTCCCTTAAAAAG+GGG | + | chr5_1:8532871-8532890 | Msa0715480:intron | 30.0% |
| !! | GAACTGTTTTTCCCTTAAAA+AGG | + | chr5_1:8532873-8532892 | Msa0715480:intron | 30.0% |
| TTATGAACATGTTTGCAACA+TGG | - | chr5_1:8532925-8532944 | Msa0715490:intron | 30.0% | |
| ! | CAACATGGACAATCATTTTA+AGG | - | chr5_1:8532940-8532959 | Msa0715490:intron | 30.0% |
| TAACAATGACCTAAAACAGA+AGG | + | chr5_1:8532992-8533011 | Msa0715480:intron | 30.0% | |
| GATGTTCTTAGTCAAAAATC+CGG | - | chr5_1:8533012-8533031 | Msa0715490:intron | 30.0% | |
| ! | TTAGTCAAAAATCCGGTTTT+CGG | - | chr5_1:8533019-8533038 | Msa0715490:intron | 30.0% |
| ! | CGATGAAATTTTGGATTTTG+AGG | + | chr5_1:8533144-8533163 | Msa0715480:intron | 30.0% |
| GAAAACATCCAAAGTGAATT+TGG | + | chr5_1:8533407-8533426 | Msa0715480:intron | 30.0% | |
| ! | GATTTTATAACCCAAAAAGC+TGG | - | chr5_1:8533428-8533447 | Msa0715490:intron | 30.0% |
| CTATCGTCAAACATTATCTT+TGG | + | chr5_1:8533561-8533580 | Msa0715480:intron | 30.0% | |
| AGTCCAAATGATAAACCAAA+TGG | - | chr5_1:8533579-8533598 | Msa0715490:intron | 30.0% | |
| ! | GATCCATTTGGTTTATCATT+TGG | + | chr5_1:8533585-8533604 | Msa0715480:intron | 30.0% |
| GAAATGCTTATATATGAACC+AGG | - | chr5_1:8533752-8533771 | Msa0715490:CDS | 30.0% | |
| AGAGTCACAAAAGATAACTA+TGG | - | chr5_1:8533849-8533868 | Msa0715490:intron | 30.0% | |
| !! | AGACATTTCGTGTTGATTCA+TGG | - | chr5_1:8528674-8528693 | Msa0715490:CDS | 35.0% |
| AAGGATAATCAAGTACCTCT+TGG | + | chr5_1:8529021-8529040 | Msa0715480:intron | 35.0% | |
| GTGAGGGACAAAAACTAAAT+AGG | - | chr5_1:8529436-8529455 | Msa0715490:intron | 35.0% | |
| ! | ACTAGAAATCTTTTGACGGT+AGG | - | chr5_1:8529879-8529898 | Msa0715490:intron | 35.0% |
| ! | TGTTTTACACATAGCACACA+TGG | - | chr5_1:8530256-8530275 | Msa0715490:intron | 35.0% |
| !! | TAATTTTAGTGTCCCAACTG+TGG | + | chr5_1:8530348-8530367 | Msa0715480:intron | 35.0% |
| ! | CTCTTTTAGTGCCCAAATTA+TGG | - | chr5_1:8530404-8530423 | Msa0715490:intron | 35.0% |
| !!! | TTTTTTTCTCACTCAAGGGT+AGG | + | chr5_1:8530964-8530983 | Msa0715480:intron | 35.0% |
| TAAGTGTGATTCCTCTAATG+AGG | - | chr5_1:8531060-8531079 | Msa0715490:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr5_1:8531325-8531344 | Msa0715490:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr5_1:8531745-8531764 | Msa0715480:intron | 35.0% |
| ! | TACTGTGAAGCTCTTTTTAG+TGG | - | chr5_1:8531843-8531862 | Msa0715490:intron | 35.0% |
| !! | GAAGCTCTTTTTAGTGGTTA+AGG | - | chr5_1:8531849-8531868 | Msa0715490:intron | 35.0% |
| !!! | GGCTAGCTTAATTTTTAGGA+AGG | + | chr5_1:8531920-8531939 | Msa0715480:intron | 35.0% |
| !! | CTTCACGTTTTGAATTTCAG+TGG | + | chr5_1:8531946-8531965 | Msa0715480:intron | 35.0% |
| !! | TCGTCGGTTTGTAAAAGTAA+GGG | + | chr5_1:8532193-8532212 | Msa0715480:intron | 35.0% |
| !! | ATCGTCGGTTTGTAAAAGTA+AGG | + | chr5_1:8532194-8532213 | Msa0715480:intron | 35.0% |
| ! | CTTTTACAAACCGACGATTT+TGG | - | chr5_1:8532196-8532215 | Msa0715490:intron | 35.0% |
| TTTGCAAAAGAGGCTAAAGT+TGG | + | chr5_1:8532254-8532273 | Msa0715480:intron | 35.0% | |
| TGGCCTGGTCAAAATTAAAA+GGG | + | chr5_1:8532285-8532304 | Msa0715480:intron | 35.0% | |
| ! | TGACGAAGCAAACACAATTT+TGG | + | chr5_1:8532385-8532404 | Msa0715480:intron | 35.0% |
| TTGCTTCGTCAAAATCAGTT+AGG | - | chr5_1:8532394-8532413 | Msa0715490:intron | 35.0% | |
| TGCTTCGTCAAAATCAGTTA+GGG | - | chr5_1:8532395-8532414 | Msa0715490:intron | 35.0% | |
| TTCACACAACGAACTAAAGT+TGG | - | chr5_1:8532425-8532444 | Msa0715490:intron | 35.0% | |
| GGACCAAAATTGTCAATTTG+TGG | - | chr5_1:8532479-8532498 | Msa0715490:intron | 35.0% | |
| ATTGTCAATTTGTGGAAGCT+TGG | - | chr5_1:8532487-8532506 | Msa0715490:intron | 35.0% | |
| TTGTCAATTTGTGGAAGCTT+GGG | - | chr5_1:8532488-8532507 | Msa0715490:intron | 35.0% | |
| !!! | GGGGTGTACTACAATTTTTT+AGG | + | chr5_1:8532532-8532551 | Msa0715480:intron | 35.0% |
| !! | GGTTGCTTTGAACTTTTCAT+AGG | + | chr5_1:8532595-8532614 | Msa0715480:intron | 35.0% |
| !!! | AATTTGAGTTTTTTCCACCC+TGG | - | chr5_1:8532739-8532758 | Msa0715490:intron | 35.0% |
| !!! | ATTTGAGTTTTTTCCACCCT+GGG | - | chr5_1:8532740-8532759 | Msa0715490:intron | 35.0% |
| !!! | GGTGCGCTATTTGATTTTTT+TGG | - | chr5_1:8532817-8532836 | Msa0715490:intron | 35.0% |
| ! | CCCTTAAAAACCCCTTTTTA+AGG | - | chr5_1:8532858-8532877 | Msa0715490:intron | 35.0% |
| ! | CCCTTAAAAAGGGGTTTTTA+AGG | + | chr5_1:8532862-8532881 | Msa0715480:intron | 35.0% |
| ! | TAGTCAAAAATCCGGTTTTC+GGG | - | chr5_1:8533020-8533039 | Msa0715490:intron | 35.0% |
| ! | CTGATTTTCTAGGCAAGTTT+CGG | + | chr5_1:8533064-8533083 | Msa0715480:intron | 35.0% |
| !! | AAATTTTGGATTTTGAGGGG+CGG | + | chr5_1:8533139-8533158 | Msa0715480:intron | 35.0% |
| ! | AAAAATGCTCCCAGCTTTTT+GGG | + | chr5_1:8533441-8533460 | Msa0715480:intron | 35.0% |
| ! | TAAAAATGCTCCCAGCTTTT+TGG | + | chr5_1:8533442-8533461 | Msa0715480:intron | 35.0% |
| CGATAGGATGGAAAAAGTAA+CGG | - | chr5_1:8533488-8533507 | Msa0715490:intron | 35.0% | |
| AATTGCAGAGTAGACAAAGT+TGG | - | chr5_1:8533520-8533539 | Msa0715490:intron | 35.0% | |
| ATTGCAGAGTAGACAAAGTT+GGG | - | chr5_1:8533521-8533540 | Msa0715490:intron | 35.0% | |
| ! | ATTATCTTTGGGTTCATGCT+GGG | + | chr5_1:8533549-8533568 | Msa0715480:intron | 35.0% |
| CCAAATAACATGGATCCATT+TGG | + | chr5_1:8533597-8533616 | Msa0715480:intron | 35.0% | |
| CCAAATGGATCCATGTTATT+TGG | - | chr5_1:8533594-8533613 | Msa0715490:intron | 35.0% | |
| !! | GATTTGTTGGCCAAATAACA+TGG | + | chr5_1:8533607-8533626 | Msa0715480:intron | 35.0% |
| !! | TGGCCAACAAATCATTTTTG+AGG | - | chr5_1:8533614-8533633 | Msa0715490:intron | 35.0% |
| ! | ACGCCTCAAAAATGATTTGT+TGG | + | chr5_1:8533620-8533639 | Msa0715480:intron | 35.0% |
| CCTTAGTAATGACATTGCAA+GGG | + | chr5_1:8533784-8533803 | Msa0715480:three_prime_UTR | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5_1:8533956-8533975 | Msa0715480:three_prime_UTR | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5_1:8533957-8533976 | Msa0715480:three_prime_UTR | 35.0% | |
| TCTTTCGGTTTAGAGAACAT+AGG | + | chr5_1:8533999-8534018 | Msa0715480:three_prime_UTR | 35.0% | |
| AGATATGCACAAAGCTCTTT+CGG | + | chr5_1:8534014-8534033 | Msa0715480:three_prime_UTR | 35.0% | |
| TTGATTCATGGATCTTGCCA+TGG | - | chr5_1:8528686-8528705 | Msa0715490:CDS | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | - | chr5_1:8528687-8528706 | Msa0715490:CDS | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5_1:8528947-8528966 | Msa0715480:intron | 40.0% |
| AAGAAGGATAGATCAGGAGA+AGG | + | chr5_1:8528989-8529008 | Msa0715480:intron | 40.0% | |
| CAACATATGCCTGTACACAA+TGG | - | chr5_1:8529137-8529156 | Msa0715490:intron | 40.0% | |
| CAGCTAGGAATTTGAAGATG+TGG | - | chr5_1:8529162-8529181 | Msa0715490:intron | 40.0% | |
| CTAGGAATTTGAAGATGTGG+AGG | - | chr5_1:8529165-8529184 | Msa0715490:intron | 40.0% | |
| ! | TCTTTCATGGGTTGTGTTGT+TGG | - | chr5_1:8529467-8529486 | Msa0715490:intron | 40.0% |
| TTATAGTAACAAGGCAAGCC+AGG | - | chr5_1:8529988-8530007 | Msa0715490:intron | 40.0% | |
| TATAGTAACAAGGCAAGCCA+GGG | - | chr5_1:8529989-8530008 | Msa0715490:intron | 40.0% | |
| ! | ACTATCTCATGATTTGCCCA+AGG | + | chr5_1:8530036-8530055 | Msa0715480:intron | 40.0% |
| ! | TATCCTAGTTTAGAGCCACT+TGG | + | chr5_1:8530184-8530203 | Msa0715480:intron | 40.0% |
| ! | TTGTCACATAGCTTGCCTTA+GGG | + | chr5_1:8530674-8530693 | Msa0715480:intron | 40.0% |
| ! | ATTGTCACATAGCTTGCCTT+AGG | + | chr5_1:8530675-8530694 | Msa0715480:intron | 40.0% |
| GTGACAATTTATCGCGTGTT+TGG | - | chr5_1:8530687-8530706 | Msa0715490:intron | 40.0% | |
| TTATCGCGTGTTTGGTTATG+CGG | - | chr5_1:8530695-8530714 | Msa0715490:intron | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr5_1:8531135-8531154 | Msa0715480:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr5_1:8531326-8531345 | Msa0715490:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr5_1:8531744-8531763 | Msa0715480:intron | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | + | chr5_1:8531537-8531556 | Msa0715480:intron | 40.0% | |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr5_1:8531546-8531565 | Msa0715480:intron | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr5_1:8531744-8531763 | Msa0715490:intron | 40.0% |
| !! | ACGTTTTGAATTTCAGTGGC+GGG | + | chr5_1:8531942-8531961 | Msa0715480:intron | 40.0% |
| !! | CACGTTTTGAATTTCAGTGG+CGG | + | chr5_1:8531943-8531962 | Msa0715480:intron | 40.0% |
| !! | CGTCGGTTTGTAAAAGTAAG+GGG | + | chr5_1:8532192-8532211 | Msa0715480:intron | 40.0% |
| ! | AGTTTGGTAGCCAAAATCGT+CGG | + | chr5_1:8532209-8532228 | Msa0715480:intron | 40.0% |
| !!! | CGTCCCTTTTAATTTTGACC+AGG | - | chr5_1:8532279-8532298 | Msa0715490:intron | 40.0% |
| CTGGCCTGGTCAAAATTAAA+AGG | + | chr5_1:8532286-8532305 | Msa0715480:intron | 40.0% | |
| ACACAACGAACTAAAGTTGG+AGG | - | chr5_1:8532428-8532447 | Msa0715490:intron | 40.0% | |
| TGTCAATTTGTGGAAGCTTG+GGG | - | chr5_1:8532489-8532508 | Msa0715490:intron | 40.0% | |
| TTTCGTATCGTTCGCGATTT+CGG | + | chr5_1:8532565-8532584 | Msa0715480:intron | 40.0% | |
| !!! | TTTGAGTTTTTTCCACCCTG+GGG | - | chr5_1:8532741-8532760 | Msa0715490:intron | 40.0% |
| ! | GAAAAACTCTTTTCACCCCA+GGG | + | chr5_1:8532759-8532778 | Msa0715480:intron | 40.0% |
| ! | AGAAAAACTCTTTTCACCCC+AGG | + | chr5_1:8532760-8532779 | Msa0715480:intron | 40.0% |
| !!! | GCACCCTATTTTGAGGTTTT+CGG | + | chr5_1:8532802-8532821 | Msa0715480:intron | 40.0% |
| ! | AAATAGCGCACCCTATTTTG+AGG | + | chr5_1:8532809-8532828 | Msa0715480:intron | 40.0% |
| AAAACAGAAGGATGAGAGTG+AGG | + | chr5_1:8532980-8532999 | Msa0715480:intron | 40.0% | |
| ! | CACTCTCATCCTTCTGTTTT+AGG | - | chr5_1:8532980-8532999 | Msa0715490:intron | 40.0% |
| TGAAATGGGAGAGATTCTGA+TGG | - | chr5_1:8533346-8533365 | Msa0715490:intron | 40.0% | |
| ! | CATTATCTTTGGGTTCATGC+TGG | + | chr5_1:8533550-8533569 | Msa0715480:intron | 40.0% |
| CCCTTGCAATGTCATTACTA+AGG | - | chr5_1:8533781-8533800 | Msa0715490:CDS | 40.0% | |
| GCCTTAGTAATGACATTGCA+AGG | + | chr5_1:8533785-8533804 | Msa0715480:three_prime_UTR | 40.0% | |
| TTGGCACACAATGAACACTT+TGG | + | chr5_1:8533883-8533902 | Msa0715480:three_prime_UTR | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | + | chr5_1:8533992-8534011 | Msa0715480:three_prime_UTR | 40.0% | |
| GATTCATGGATCTTGCCATG+GGG | - | chr5_1:8528688-8528707 | Msa0715490:CDS | 45.0% | |
| CGAAGTCACAACACTAGACA+TGG | - | chr5_1:8528757-8528776 | Msa0715490:CDS | 45.0% | |
| !! | AGGATAACTCTCTGGTCTTG+TGG | + | chr5_1:8528872-8528891 | Msa0715480:three_prime_UTR | 45.0% |
| AGACCAGAGAGTTATCCTAG+TGG | - | chr5_1:8528874-8528893 | Msa0715490:CDS | 45.0% | |
| GACCAGAGAGTTATCCTAGT+GGG | - | chr5_1:8528875-8528894 | Msa0715490:CDS | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5_1:8528887-8528906 | Msa0715490:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5_1:8528891-8528910 | Msa0715490:CDS | 45.0% |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5_1:8528907-8528926 | Msa0715490:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5_1:8528913-8528932 | Msa0715490:CDS | 45.0% | |
| TCCTTCAGATTTGGATGCCT+TGG | - | chr5_1:8530016-8530035 | Msa0715490:intron | 45.0% | |
| CCTTCAGATTTGGATGCCTT+GGG | - | chr5_1:8530017-8530036 | Msa0715490:intron | 45.0% | |
| !! | GAACCAAGTGGCTCTAAACT+AGG | - | chr5_1:8530178-8530197 | Msa0715490:intron | 45.0% |
| !! | CAAGTGTCGAGTGTAGACTT+TGG | + | chr5_1:8530213-8530232 | Msa0715480:intron | 45.0% |
| !! | CCAGGGCACCAAATTTTCAT+GGG | + | chr5_1:8530618-8530637 | Msa0715480:intron | 45.0% |
| !! | CCATGAAAATTTGGTGCCCT+GGG | - | chr5_1:8530616-8530635 | Msa0715490:intron | 45.0% |
| ! | TGTCACATAGCTTGCCTTAG+GGG | + | chr5_1:8530673-8530692 | Msa0715480:intron | 45.0% |
| AAATTATACTCCCTCCGTCC+CGG | + | chr5_1:8531347-8531366 | Msa0715480:intron | 45.0% | |
| !!! | GCGGGGCTAGCTTAATTTTT+AGG | + | chr5_1:8531924-8531943 | Msa0715480:intron | 45.0% |
| !! | CGTTTTGAATTTCAGTGGCG+GGG | + | chr5_1:8531941-8531960 | Msa0715480:intron | 45.0% |
| ! | GGACGACACTTTTGCAAAAG+AGG | + | chr5_1:8532264-8532283 | Msa0715480:intron | 45.0% |
| ! | TGTTAGTATATGCACTGGCC+TGG | + | chr5_1:8532300-8532319 | Msa0715480:intron | 45.0% |
| CGATTTCGGTCTAAACTTGG+GGG | + | chr5_1:8532551-8532570 | Msa0715480:intron | 45.0% | |
| GCGATTTCGGTCTAAACTTG+GGG | + | chr5_1:8532552-8532571 | Msa0715480:intron | 45.0% | |
| CGCGATTTCGGTCTAAACTT+GGG | + | chr5_1:8532553-8532572 | Msa0715480:intron | 45.0% | |
| TCGCGATTTCGGTCTAAACT+TGG | + | chr5_1:8532554-8532573 | Msa0715480:intron | 45.0% | |
| !!! | AGGGGTTTTTAAGGGGTGTT+CGG | + | chr5_1:8532853-8532872 | Msa0715480:intron | 45.0% |
| TGATCAAGTAGCCCGAAAAC+CGG | + | chr5_1:8533034-8533053 | Msa0715480:intron | 45.0% | |
| AGAATCAAGACTCCCGTAGA+AGG | - | chr5_1:8533097-8533116 | Msa0715490:intron | 45.0% | |
| GAATCAAGACTCCCGTAGAA+GGG | - | chr5_1:8533098-8533117 | Msa0715490:intron | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | - | chr5_1:8533638-8533657 | Msa0715490:intron | 45.0% | |
| ! | TTGATTAGCCAGCATACCTC+AGG | + | chr5_1:8533657-8533676 | Msa0715480:intron | 45.0% |
| TGTCATTACTAAGGCCTGCT+AGG | - | chr5_1:8533790-8533809 | Msa0715490:CDS | 45.0% | |
| ! | GCGTTGACACTTTGTCTTGT+TGG | + | chr5_1:8533902-8533921 | Msa0715480:three_prime_UTR | 45.0% |
| !!! | TTTTTGTTAATTTTTTTATA+AGG | + | chr5_1:8530061-8530080 | Msa0715480:intron | 5.0% |
| ACACTAGACATGGCTGCTTC+TGG | - | chr5_1:8528767-8528786 | Msa0715490:CDS | 50.0% | |
| CACTAGACATGGCTGCTTCT+GGG | - | chr5_1:8528768-8528787 | Msa0715490:CDS | 50.0% | |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5_1:8528796-8528815 | Msa0715480:three_prime_UTR | 50.0% |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5_1:8528796-8528815 | Msa0715490:CDS | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5_1:8528800-8528819 | Msa0715480:three_prime_UTR | 50.0% | |
| GACCCACTAGGATAACTCTC+TGG | + | chr5_1:8528880-8528899 | Msa0715480:three_prime_UTR | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5_1:8528892-8528911 | Msa0715480:three_prime_UTR | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5_1:8528890-8528909 | Msa0715490:CDS | 50.0% |
| GGCATCCAAATCTGAAGGAC+CGG | + | chr5_1:8530015-8530034 | Msa0715480:intron | 50.0% | |
| ! | CCCAAGGCATCCAAATCTGA+AGG | + | chr5_1:8530020-8530039 | Msa0715480:intron | 50.0% |
| !! | CCCATGAAAATTTGGTGCCC+TGG | - | chr5_1:8530615-8530634 | Msa0715490:intron | 50.0% |
| !! | CCCAGGGCACCAAATTTTCA+TGG | + | chr5_1:8530619-8530638 | Msa0715480:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr5_1:8531330-8531349 | Msa0715490:intron | 50.0% | |
| ! | AAACTCTTTTCACCCCAGGG+TGG | + | chr5_1:8532756-8532775 | Msa0715480:intron | 50.0% |
| TGCGTGAGAATGCGATAGGA+TGG | - | chr5_1:8533476-8533495 | Msa0715490:intron | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | - | chr5_1:8533646-8533665 | Msa0715490:intron | 50.0% | |
| ATTAGCCAGCATACCTCAGG+TGG | + | chr5_1:8533654-8533673 | Msa0715480:intron | 50.0% | |
| ACATTGCAAGGGACAAGTCC+TGG | + | chr5_1:8533773-8533792 | Msa0715480:three_prime_UTR | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | + | chr5_1:8533807-8533826 | Msa0715480:three_prime_UTR | 50.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | - | chr5_1:8528693-8528712 | Msa0715490:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5_1:8528706-8528725 | Msa0715480:three_prime_UTR | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | - | chr5_1:8528706-8528725 | Msa0715490:CDS | 55.0% |
| CTAGCTGCGCCATTGTGTAC+AGG | + | chr5_1:8529149-8529168 | Msa0715480:three_prime_UTR | 55.0% | |
| CTGTACACAATGGCGCAGCT+AGG | - | chr5_1:8529147-8529166 | Msa0715490:intron | 55.0% | |
| ! | CACATAGCTTGCCTTAGGGG+TGG | + | chr5_1:8530670-8530689 | Msa0715480:intron | 55.0% |
| TCGCGTGTTTGGTTATGCGG+TGG | - | chr5_1:8530698-8530717 | Msa0715490:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr5_1:8531334-8531353 | Msa0715490:intron | 55.0% | |
| GCGCGAGTAACACATAGGGT+GGG | + | chr5_1:8532672-8532691 | Msa0715480:intron | 55.0% | |
| CCGTAGGAAGTCCCTTCTAC+GGG | + | chr5_1:8533112-8533131 | Msa0715480:intron | 55.0% | |
| CCCGTAGAAGGGACTTCCTA+CGG | - | chr5_1:8533109-8533128 | Msa0715490:intron | 55.0% | |
| CCCGTAGGAAGTCCCTTCTA+CGG | + | chr5_1:8533113-8533132 | Msa0715480:intron | 55.0% | |
| CCGTAGAAGGGACTTCCTAC+GGG | - | chr5_1:8533110-8533129 | Msa0715490:intron | 55.0% | |
| AGGGTGCGTGAGAATGCGAT+AGG | - | chr5_1:8533472-8533491 | Msa0715490:intron | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | - | chr5_1:8533798-8533817 | Msa0715490:CDS | 55.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5_1:8528699-8528718 | Msa0715490:CDS | 60.0% | |
| GTAACAAGGCAAGCCAGGGC+CGG | - | chr5_1:8529993-8530012 | Msa0715490:intron | 60.0% | |
| CAAATCTGAAGGACCGGCCC+TGG | + | chr5_1:8530009-8530028 | Msa0715480:intron | 60.0% | |
| CAGGGCCGGTCCTTCAGATT+TGG | - | chr5_1:8530007-8530026 | Msa0715490:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr5_1:8531333-8531352 | Msa0715490:intron | 60.0% | |
| CGCGCGAGTAACACATAGGG+TGG | + | chr5_1:8532673-8532692 | Msa0715480:intron | 60.0% | |
| GGGCGCGCGAGTAACACATA+GGG | + | chr5_1:8532676-8532695 | Msa0715480:intron | 60.0% | |
| AGGGCGCGCGAGTAACACAT+AGG | + | chr5_1:8532677-8532696 | Msa0715480:intron | 60.0% | |
| TTTGAGGGGCGGAATCCCGT+AGG | + | chr5_1:8533128-8533147 | Msa0715480:intron | 60.0% | |
| TTAGGGGTGGCCCTGAGCAC+GGG | + | chr5_1:8530657-8530676 | Msa0715480:intron | 65.0% | |
| CTTAGGGGTGGCCCTGAGCA+CGG | + | chr5_1:8530658-8530677 | Msa0715480:intron | 65.0% | |
| TGGCCCTGAGCACGGGTCGA+GGG | + | chr5_1:8530650-8530669 | Msa0715480:intron | 70.0% | |
| CGTGCTCAGGGCCACCCCTA+AGG | - | chr5_1:8530656-8530675 | Msa0715490:intron | 70.0% | |
| CTGAGCACGGGTCGAGGGGG+CGG | + | chr5_1:8530645-8530664 | Msa0715480:intron | 75.0% | |
| GCCCCCTCGACCCGTGCTCA+GGG | - | chr5_1:8530644-8530663 | Msa0715490:intron | 75.0% | |
| GCCCTGAGCACGGGTCGAGG+GGG | + | chr5_1:8530648-8530667 | Msa0715480:intron | 75.0% | |
| GGCCCTGAGCACGGGTCGAG+GGG | + | chr5_1:8530649-8530668 | Msa0715480:intron | 75.0% | |
| GTGGCCCTGAGCACGGGTCG+AGG | + | chr5_1:8530651-8530670 | Msa0715480:intron | 75.0% | |
| ! | GTCGAGGGGGCGGCAGCCCA+GGG | + | chr5_1:8530635-8530654 | Msa0715480:intron | 80.0% |
| ! | CGCCCCCTCGACCCGTGCTC+AGG | - | chr5_1:8530643-8530662 | Msa0715490:intron | 80.0% |
| ! | GGTCGAGGGGGCGGCAGCCC+AGG | + | chr5_1:8530636-8530655 | Msa0715480:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 8528656 | 8534061 | 8528656 | ID=Msa0715490;Name=Msa0715490 |
| chr5_1 | mRNA | 8528656 | 8534061 | 8528656 | ID=Msa0715490-mRNA-1;Parent=Msa0715490;Name=Msa0715490-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0.33|3|0|212 |
| chr5_1 | exon | 8533874 | 8534061 | 8533874 | ID=Msa0715490-mRNA-1:exon:3526;Parent=Msa0715490-mRNA-1 |
| chr5_1 | exon | 8533693 | 8533855 | 8533693 | ID=Msa0715490-mRNA-1:exon:3525;Parent=Msa0715490-mRNA-1 |
| chr5_1 | exon | 8528656 | 8528943 | 8528656 | ID=Msa0715490-mRNA-1:exon:3524;Parent=Msa0715490-mRNA-1 |
| chr5_1 | CDS | 8533874 | 8534061 | 8533874 | ID=Msa0715490-mRNA-1:cds;Parent=Msa0715490-mRNA-1 |
| chr5_1 | CDS | 8533693 | 8533855 | 8533693 | ID=Msa0715490-mRNA-1:cds;Parent=Msa0715490-mRNA-1 |
| chr5_1 | CDS | 8528656 | 8528943 | 8528656 | ID=Msa0715490-mRNA-1:cds;Parent=Msa0715490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
