Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798370 | XP_003611830.1 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798370 | sp|D7SSD8|MJE1_VITVI | 57.198 | 257 | 107 | 3 | 4 | 259 | 6 | 260 | 2.54e-106 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798370 | G7K9E5 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610590 | Msa0798370 | 0.811428 | 7.036602e-51 | -8.615850e-47 |
| Msa0651190 | Msa0798370 | 0.807584 | 4.705994e-50 | -8.615850e-47 |
| Msa0715490 | Msa0798370 | 0.812530 | 4.047558e-51 | -8.615850e-47 |
| Msa0767080 | Msa0798370 | 0.807379 | 5.203564e-50 | -8.615850e-47 |
| Msa0798370 | Msa1091830 | 0.803013 | 4.268092e-49 | -8.615850e-47 |
| Msa0798370 | Msa1116690 | 0.812138 | 4.930505e-51 | -8.615850e-47 |
| Msa0798370 | Msa1175330 | 0.810845 | 9.412633e-51 | -8.615850e-47 |
| Msa0365490 | Msa0798370 | 0.803650 | 3.150970e-49 | -8.615850e-47 |
| Msa0473240 | Msa0798370 | 0.809696 | 1.665708e-50 | -8.615850e-47 |
| Msa0578970 | Msa0798370 | 0.810768 | 9.778773e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798370 | MtrunA17_Chr5g0402871 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 526 |
| Msa0798370 | MtrunA17_Chr5g0402851 | 87.938 | 257 | 31 | 0 | 4 | 260 | 7 | 263 | 4.40e-173 | 477 |
| Msa0798370 | MtrunA17_Chr5g0402841 | 83.270 | 263 | 40 | 2 | 1 | 260 | 1 | 262 | 1.02e-161 | 449 |
| Msa0798370 | MtrunA17_Chr8g0336391 | 53.077 | 260 | 120 | 2 | 1 | 259 | 23 | 281 | 4.04e-99 | 291 |
| Msa0798370 | MtrunA17_Chr8g0336401 | 53.053 | 262 | 118 | 4 | 2 | 259 | 24 | 284 | 7.44e-93 | 275 |
| Msa0798370 | MtrunA17_Chr8g0336411 | 50.385 | 260 | 126 | 3 | 1 | 259 | 24 | 281 | 5.40e-90 | 268 |
| Msa0798370 | MtrunA17_Chr3g0104871 | 48.846 | 260 | 128 | 3 | 1 | 259 | 15 | 270 | 1.30e-87 | 261 |
| Msa0798370 | MtrunA17_Chr8g0336441 | 48.649 | 259 | 128 | 3 | 2 | 259 | 24 | 278 | 2.70e-87 | 261 |
| Msa0798370 | MtrunA17_Chr8g0336381 | 45.736 | 258 | 137 | 3 | 4 | 259 | 6 | 262 | 2.15e-79 | 240 |
| Msa0798370 | MtrunA17_Chr8g0374141 | 45.736 | 258 | 131 | 4 | 4 | 259 | 52 | 302 | 3.11e-74 | 228 |
| Msa0798370 | MtrunA17_Chr5g0402881 | 40.698 | 258 | 142 | 4 | 5 | 259 | 29 | 278 | 6.80e-64 | 201 |
| Msa0798370 | MtrunA17_Chr5g0402901 | 41.085 | 258 | 143 | 3 | 4 | 259 | 11 | 261 | 3.45e-60 | 191 |
| Msa0798370 | MtrunA17_Chr7g0219561 | 40.234 | 256 | 149 | 2 | 1 | 256 | 120 | 371 | 1.81e-56 | 185 |
| Msa0798370 | MtrunA17_Chr3g0077351 | 35.878 | 262 | 153 | 4 | 1 | 256 | 90 | 342 | 4.92e-49 | 165 |
| Msa0798370 | MtrunA17_Chr5g0428471 | 36.719 | 256 | 158 | 1 | 4 | 259 | 29 | 280 | 4.47e-46 | 155 |
| Msa0798370 | MtrunA17_Chr3g0128581 | 36.719 | 256 | 157 | 2 | 1 | 256 | 32 | 282 | 6.91e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798370 | AT2G23610.1 | 45.211 | 261 | 132 | 5 | 4 | 259 | 8 | 262 | 1.29e-75 | 231 |
| Msa0798370 | AT2G23560.1 | 46.768 | 263 | 127 | 6 | 2 | 259 | 5 | 259 | 7.00e-75 | 229 |
| Msa0798370 | AT3G50440.1 | 42.969 | 256 | 141 | 3 | 6 | 259 | 22 | 274 | 4.38e-73 | 224 |
| Msa0798370 | AT2G23620.1 | 42.412 | 257 | 145 | 2 | 4 | 259 | 8 | 262 | 1.25e-71 | 221 |
| Msa0798370 | AT2G23580.1 | 45.247 | 263 | 134 | 6 | 2 | 259 | 5 | 262 | 9.46e-71 | 218 |
| Msa0798370 | AT2G23600.1 | 41.245 | 257 | 148 | 2 | 4 | 259 | 8 | 262 | 3.56e-68 | 212 |
| Msa0798370 | AT4G37150.1 | 42.748 | 262 | 136 | 6 | 4 | 259 | 2 | 255 | 5.00e-68 | 211 |
| Msa0798370 | AT2G23600.2 | 41.245 | 257 | 148 | 2 | 4 | 259 | 23 | 277 | 6.02e-68 | 212 |
| Msa0798370 | AT2G23550.4 | 43.726 | 263 | 138 | 6 | 2 | 259 | 12 | 269 | 8.04e-66 | 206 |
| Msa0798370 | AT2G23550.1 | 43.726 | 263 | 138 | 6 | 2 | 259 | 5 | 262 | 9.51e-66 | 206 |
| Msa0798370 | AT5G10300.1 | 41.085 | 258 | 143 | 3 | 5 | 259 | 6 | 257 | 1.66e-60 | 192 |
| Msa0798370 | AT2G23590.1 | 37.452 | 259 | 152 | 2 | 1 | 259 | 23 | 271 | 5.27e-60 | 191 |
| Msa0798370 | AT2G23610.2 | 40.078 | 257 | 106 | 5 | 4 | 259 | 8 | 217 | 1.09e-59 | 188 |
| Msa0798370 | AT3G29770.1 | 39.453 | 256 | 151 | 2 | 1 | 256 | 134 | 385 | 7.99e-53 | 176 |
| Msa0798370 | AT1G26360.1 | 37.647 | 255 | 155 | 2 | 2 | 256 | 186 | 436 | 1.51e-51 | 174 |
| Msa0798370 | AT5G58310.1 | 34.848 | 264 | 162 | 3 | 1 | 258 | 1 | 260 | 1.55e-51 | 169 |
| Msa0798370 | AT2G23550.2 | 38.550 | 262 | 124 | 6 | 2 | 259 | 5 | 233 | 6.31e-50 | 164 |
| Msa0798370 | AT1G69240.1 | 35.769 | 260 | 155 | 5 | 2 | 256 | 184 | 436 | 3.61e-47 | 162 |
| Msa0798370 | AT1G33990.1 | 35.019 | 257 | 156 | 3 | 4 | 256 | 96 | 345 | 9.74e-47 | 159 |
| Msa0798370 | AT4G09900.1 | 34.615 | 260 | 159 | 3 | 1 | 256 | 94 | 346 | 9.87e-47 | 159 |
| Msa0798370 | AT2G23600.3 | 43.558 | 163 | 91 | 1 | 4 | 165 | 23 | 185 | 1.74e-45 | 151 |
| Msa0798370 | AT4G16690.1 | 36.328 | 256 | 141 | 4 | 5 | 252 | 12 | 253 | 8.33e-45 | 152 |
| Msa0798370 | AT2G23580.2 | 45.509 | 167 | 83 | 4 | 2 | 163 | 5 | 168 | 1.08e-43 | 147 |
| Msa0798370 | AT3G10870.1 | 35.968 | 253 | 159 | 3 | 5 | 256 | 20 | 270 | 1.74e-43 | 149 |
| Msa0798370 | AT5G10300.2 | 43.353 | 173 | 91 | 2 | 5 | 174 | 6 | 174 | 4.39e-41 | 140 |
| Msa0798370 | AT2G23550.3 | 45.509 | 167 | 83 | 4 | 2 | 163 | 12 | 175 | 8.10e-41 | 140 |
| Msa0798370 | AT4G37140.1 | 50.476 | 105 | 52 | 0 | 4 | 108 | 2 | 106 | 4.19e-39 | 133 |
| Msa0798370 | AT2G23570.1 | 43.716 | 183 | 94 | 5 | 81 | 259 | 1 | 178 | 1.51e-36 | 128 |
| Msa0798370 | AT4G37140.2 | 49.451 | 91 | 46 | 0 | 4 | 94 | 2 | 92 | 6.05e-32 | 113 |
| Msa0798370 | AT3G29770.2 | 44.156 | 77 | 43 | 0 | 1 | 77 | 134 | 210 | 4.59e-18 | 82.0 |
Find 61 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5_3:-11106027 | Msa0798370:CDS |
| CCCTTGCAATGTCTTTAATA+AGG | 0.211857 | 5_3:-11105814 | Msa0798370:CDS |
| GAACCATTTGGTTTATCATT+AGG | 0.217887 | 5_3:+11106039 | None:intergenic |
| AACCGTTGATTGAATTTCTA+AGG | 0.235120 | 5_3:-11108098 | Msa0798370:CDS |
| AACCATTTGGTTTATCATTA+GGG | 0.239611 | 5_3:+11106040 | None:intergenic |
| TTTGCTGATCAAGAACTATT+AGG | 0.294996 | 5_3:-11105779 | Msa0798370:CDS |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5_3:-11108171 | Msa0798370:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5_3:+11106027 | None:intergenic |
| AGACATTTCGTGTTGGTTCA+TGG | 0.351633 | 5_3:-11108264 | Msa0798370:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5_3:+11108141 | None:intergenic |
| ATTGCAGTATCAACAAAGAT+TGG | 0.372297 | 5_3:-11106100 | Msa0798370:intron |
| CTCTTTCGGTTTGGAGAACA+TGG | 0.400553 | 5_3:+11105598 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5_3:+11108145 | None:intergenic |
| GCGTATCTTCAAGAAATTGC+GGG | 0.452472 | 5_3:-11105569 | Msa0798370:CDS |
| ATTGCTCTGTTGAAATCTGC+TGG | 0.456073 | 5_3:-11108207 | Msa0798370:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.457852 | 5_3:-11108239 | Msa0798370:CDS |
| TTGGTTCATGGAGCTTGCCA+TGG | 0.459523 | 5_3:-11108252 | Msa0798370:CDS |
| AGAGTCAAGAAGCTTAGATC+AGG | 0.464438 | 5_3:+11107946 | None:intergenic |
| AGTGTCACACAAAACAACTA+TGG | 0.473238 | 5_3:-11105746 | Msa0798370:CDS |
| CATAATCTTTGTGTCCAAGC+TGG | 0.478530 | 5_3:+11106074 | None:intergenic |
| TGGTTCATGGAGCTTGCCAT+GGG | 0.483424 | 5_3:-11108251 | Msa0798370:CDS |
| TGATCAGCAAAGCTACGAAC+AGG | 0.487222 | 5_3:+11105791 | None:intergenic |
| ATGGAGCTTGCCATGGGGCA+TGG | 0.500266 | 5_3:-11108245 | Msa0798370:CDS |
| GAGGGACTAGGAAAGTTAGA+TGG | 0.500757 | 5_3:-11108292 | Msa0798370:exon |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5_3:+11108169 | None:intergenic |
| GCCTTATTAAAGACATTGCA+AGG | 0.509202 | 5_3:+11105813 | None:intergenic |
| AGCCCTAATGATAAACCAAA+TGG | 0.509653 | 5_3:-11106042 | Msa0798370:CDS |
| ATCACTCTGACATCATTAGC+AGG | 0.512052 | 5_3:+11105641 | None:intergenic |
| ACAAAGATTGGATTCCAGCT+TGG | 0.525705 | 5_3:-11106088 | Msa0798370:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5_3:-11108051 | Msa0798370:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5_3:-11108142 | Msa0798370:CDS |
| GACCTTAGAAATTCAATCAA+CGG | 0.539220 | 5_3:+11108096 | None:intergenic |
| AACTTGGTTGCTAAGAATTG+TGG | 0.545480 | 5_3:+11106003 | None:intergenic |
| AGGATAACTCTCTGGTCTTG+TGG | 0.547320 | 5_3:+11108069 | None:intergenic |
| TGGAGATAGTTGATACAACT+TGG | 0.547501 | 5_3:+11105987 | None:intergenic |
| TAAACATAGCAGGAGGGACT+AGG | 0.550671 | 5_3:-11108304 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5_3:+11108008 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5_3:-11108048 | Msa0798370:CDS |
| GACCCACTAGGATAACTCTC+TGG | 0.572600 | 5_3:+11108061 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5_3:-11108025 | Msa0798370:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5_3:+11108170 | None:intergenic |
| TGCGTATCTTCAAGAAATTG+CGG | 0.593654 | 5_3:-11105570 | Msa0798370:CDS |
| GACCAGAGAGTTATCCTAGT+GGG | 0.595402 | 5_3:-11108063 | Msa0798370:CDS |
| AAGAAGCTTAGATCAGGAGA+AGG | 0.607709 | 5_3:+11107952 | None:intergenic |
| CGTATCTTCAAGAAATTGCG+GGG | 0.611463 | 5_3:-11105568 | Msa0798370:CDS |
| CTTCTTGACTCTTCTCCAAG+AGG | 0.614857 | 5_3:-11107935 | Msa0798370:intron |
| ATAAGCCAGTATACCTCAGG+TGG | 0.615149 | 5_3:+11105967 | None:intergenic |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5_3:-11108181 | Msa0798370:CDS |
| GGATACAAGACATTTCGTGT+TGG | 0.618681 | 5_3:-11108271 | Msa0798370:CDS |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5_3:-11108031 | Msa0798370:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5_3:+11106017 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5_3:+11108049 | None:intergenic |
| TCACTCTGACATCATTAGCA+GGG | 0.630371 | 5_3:+11105642 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5_3:-11108047 | Msa0798370:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5_3:+11108235 | None:intergenic |
| GATTGTTGATGCTGATCACA+TGG | 0.659591 | 5_3:-11105621 | Msa0798370:CDS |
| CCTTATTAAAGACATTGCAA+GGG | 0.676815 | 5_3:+11105814 | None:intergenic |
| GTATCAACTATCTCCACCTG+AGG | 0.688226 | 5_3:-11105980 | Msa0798370:intron |
| GGTTCATGGAGCTTGCCATG+GGG | 0.706151 | 5_3:-11108250 | Msa0798370:CDS |
| GTATCTTCAAGAAATTGCGG+GGG | 0.724507 | 5_3:-11105567 | Msa0798370:CDS |
| AGACCAGAGAGTTATCCTAG+TGG | 0.747538 | 5_3:-11108064 | Msa0798370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGATCATAATTATAAT+AGG | - | chr5_3:11106436-11106455 | Msa0798370:intron | 10.0% |
| !!! | AAATCTATTTTATATGAATA+TGG | + | chr5_3:11107035-11107054 | None:intergenic | 10.0% |
| !!! | AAGTTTTGATTTTAAAATTA+GGG | + | chr5_3:11107608-11107627 | None:intergenic | 10.0% |
| !!! | AAAGTTTTGATTTTAAAATT+AGG | + | chr5_3:11107609-11107628 | None:intergenic | 10.0% |
| !!! | AATATACTTTTAAATTCTTT+GGG | - | chr5_3:11107925-11107944 | Msa0798370:intron | 10.0% |
| !!! | AGTATCATTTTTTTTTTTAA+AGG | + | chr5_3:11107968-11107987 | None:intergenic | 10.0% |
| !! | CTAAAATACAATAAAGATTA+TGG | - | chr5_3:11106182-11106201 | Msa0798370:intron | 15.0% |
| !!! | TTTAAAATTAAGATAAAGAG+TGG | - | chr5_3:11107490-11107509 | Msa0798370:intron | 15.0% |
| !! | TTTAACCCTTATATAATTTA+AGG | + | chr5_3:11107527-11107546 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTAAAATTAG+GGG | + | chr5_3:11107607-11107626 | None:intergenic | 15.0% |
| !!! | TGGTTACTTAATTTTTTTAT+AGG | + | chr5_3:11107680-11107699 | None:intergenic | 15.0% |
| !!! | CAATATACTTTTAAATTCTT+TGG | - | chr5_3:11107924-11107943 | Msa0798370:intron | 15.0% |
| !!! | TCTTTATTGTATTTTAGCTA+AGG | + | chr5_3:11106179-11106198 | None:intergenic | 20.0% |
| !! | ATACAATAAAGATTATGGAT+AGG | - | chr5_3:11106187-11106206 | Msa0798370:intron | 20.0% |
| !!! | CATATATCACATTTCTTTTT+TGG | + | chr5_3:11106466-11106485 | None:intergenic | 20.0% |
| !! | AACGAGTAAAAATAAAAAGA+TGG | - | chr5_3:11106709-11106728 | Msa0798370:intron | 20.0% |
| !! | TAAAAAGATGGTATGTTTAT+AGG | - | chr5_3:11106721-11106740 | Msa0798370:intron | 20.0% |
| !! | AACACTTATTTAATCCTTAA+AGG | - | chr5_3:11106988-11107007 | Msa0798370:intron | 20.0% |
| !! | AGTAATATAACATACCTTTA+AGG | + | chr5_3:11107005-11107024 | None:intergenic | 20.0% |
| !! | TCCTTTCCTTAAATTATATA+AGG | - | chr5_3:11107518-11107537 | Msa0798370:intron | 20.0% |
| !! | CCTTTCCTTAAATTATATAA+GGG | - | chr5_3:11107519-11107538 | Msa0798370:intron | 20.0% |
| !!! | AGAAACAGAAAATCAAATTT+TGG | - | chr5_3:11107633-11107652 | Msa0798370:intron | 20.0% |
| !!! | AGAAAATCAAATTTTGGAAA+AGG | - | chr5_3:11107639-11107658 | Msa0798370:intron | 20.0% |
| !! | ATTGATGAAGAAGAAAAAAA+TGG | + | chr5_3:11107700-11107719 | None:intergenic | 20.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5_3:11105841-11105860 | None:intergenic | 25.0% |
| ! | TGATGATAGCTATGAAATAT+GGG | + | chr5_3:11105965-11105984 | None:intergenic | 25.0% |
| !! | TTGATGATAGCTATGAAATA+TGG | + | chr5_3:11105966-11105985 | None:intergenic | 25.0% |
| ! | TTCATAGCTATCATCAAATT+TGG | - | chr5_3:11105969-11105988 | Msa0798370:intron | 25.0% |
| ! | TCATAGCTATCATCAAATTT+GGG | - | chr5_3:11105970-11105989 | Msa0798370:intron | 25.0% |
| ! | AGTTTCAAAAATAATCTAGC+TGG | - | chr5_3:11106098-11106117 | Msa0798370:intron | 25.0% |
| ! | GTTTCAAAAATAATCTAGCT+GGG | - | chr5_3:11106099-11106118 | Msa0798370:intron | 25.0% |
| ! | ACTATATCATAAACCTCTAT+CGG | + | chr5_3:11106228-11106247 | None:intergenic | 25.0% |
| ! | AATCGAAATATGATATGTTG+AGG | - | chr5_3:11106299-11106318 | Msa0798370:intron | 25.0% |
| ! | AACCAAAGATTGTATACTTA+CGG | + | chr5_3:11106595-11106614 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | + | chr5_3:11106805-11106824 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | + | chr5_3:11106806-11106825 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | + | chr5_3:11106805-11106824 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | + | chr5_3:11106806-11106825 | None:intergenic | 25.0% |
| !!! | CTTGAAAGTTTTTTTGTGAA+GGG | + | chr5_3:11107131-11107150 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGTTTTTTTGTGA+AGG | + | chr5_3:11107132-11107151 | None:intergenic | 25.0% |
| ! | ACTAATAAACAAATAGGAGT+GGG | - | chr5_3:11107341-11107360 | Msa0798370:intron | 25.0% |
| ! | CCCTTATATAATTTAAGGAA+AGG | + | chr5_3:11107522-11107541 | None:intergenic | 25.0% |
| !!! | TTGCTATTTTTTCATGTGTT+TGG | + | chr5_3:11107561-11107580 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTA+GGG | + | chr5_3:11107809-11107828 | None:intergenic | 25.0% |
| ! | AACCGTTGATTGAATTTCTA+AGG | - | chr5_3:11105748-11105767 | Msa0798370:CDS | 30.0% |
| GACCTTAGAAATTCAATCAA+CGG | + | chr5_3:11105753-11105772 | None:intergenic | 30.0% | |
| AGCAATAATTTAGTACCTCT+TGG | + | chr5_3:11105929-11105948 | None:intergenic | 30.0% | |
| TCATAATAACGTAGCATATG+TGG | - | chr5_3:11106045-11106064 | Msa0798370:CDS | 30.0% | |
| GTAAGCTATATGAATACCTT+GGG | - | chr5_3:11106399-11106418 | Msa0798370:intron | 30.0% | |
| ! | TATGATCTTTTACCATCAAG+AGG | + | chr5_3:11106428-11106447 | None:intergenic | 30.0% |
| GAGCTAAAAATTTAACTGCA+TGG | - | chr5_3:11106743-11106762 | Msa0798370:intron | 30.0% | |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | - | chr5_3:11106818-11106837 | Msa0798370:intron | 30.0% |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | - | chr5_3:11106818-11106837 | Msa0798370:intron | 30.0% |
| ACAGAGAACAAATCTTTCAT+TGG | - | chr5_3:11107184-11107203 | Msa0798370:intron | 30.0% | |
| ! | TTTTTGACACAACCAGAATT+AGG | - | chr5_3:11107215-11107234 | Msa0798370:intron | 30.0% |
| !!! | AGGTTTTTAAAGCCTAATTC+TGG | + | chr5_3:11107230-11107249 | None:intergenic | 30.0% |
| GCGATCACTAATAAACAAAT+AGG | - | chr5_3:11107335-11107354 | Msa0798370:intron | 30.0% | |
| CACTAATAAACAAATAGGAG+TGG | - | chr5_3:11107340-11107359 | Msa0798370:intron | 30.0% | |
| ! | TTTTTCATGTGTTTGGACTT+TGG | + | chr5_3:11107554-11107573 | None:intergenic | 30.0% |
| ATTGCAGTATCAACAAAGAT+TGG | - | chr5_3:11107746-11107765 | Msa0798370:intron | 30.0% | |
| ! | GAACCATTTGGTTTATCATT+AGG | + | chr5_3:11107810-11107829 | None:intergenic | 30.0% |
| GAAATGGTTATATATGAACC+AGG | - | chr5_3:11108003-11108022 | Msa0798370:CDS | 30.0% | |
| CCTTATTAAAGACATTGCAA+GGG | + | chr5_3:11108035-11108054 | None:intergenic | 30.0% | |
| TTTGCTGATCAAGAACTATT+AGG | - | chr5_3:11108067-11108086 | Msa0798370:CDS | 30.0% | |
| !! | GTTTTAACACTTTGTCTTGT+TGG | + | chr5_3:11108153-11108172 | None:intergenic | 30.0% |
| AAGCATGATGCATACATATG+TGG | - | chr5_3:11105998-11106017 | Msa0798370:CDS | 35.0% | |
| TATCATAAACCTCTATCGGT+CGG | + | chr5_3:11106224-11106243 | None:intergenic | 35.0% | |
| ! | ATTCTGACCTGATTTGAAGT+TGG | + | chr5_3:11106256-11106275 | None:intergenic | 35.0% |
| CATGAGACTAATTCTCGAAT+CGG | + | chr5_3:11106366-11106385 | None:intergenic | 35.0% | |
| ! | TTCGAGAATTAGTCTCATGA+CGG | - | chr5_3:11106367-11106386 | Msa0798370:intron | 35.0% |
| GGTAAGCTATATGAATACCT+TGG | - | chr5_3:11106398-11106417 | Msa0798370:intron | 35.0% | |
| CTCCGTAAGTATACAATCTT+TGG | - | chr5_3:11106590-11106609 | Msa0798370:intron | 35.0% | |
| ! | CATGTGAAAGCTTTAATAGC+TGG | - | chr5_3:11106817-11106836 | Msa0798370:intron | 35.0% |
| ! | CATGTGAAAGCTTTAATAGC+TGG | - | chr5_3:11106817-11106836 | Msa0798370:intron | 35.0% |
| TAAGTTTCAAGACTGGAGTT+GGG | + | chr5_3:11107276-11107295 | None:intergenic | 35.0% | |
| GTACTAGTAAGTTTCAAGAC+TGG | + | chr5_3:11107283-11107302 | None:intergenic | 35.0% | |
| AGCCCTAATGATAAACCAAA+TGG | - | chr5_3:11107804-11107823 | Msa0798370:intron | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | chr5_3:11107822-11107841 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | chr5_3:11107819-11107838 | Msa0798370:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | + | chr5_3:11107832-11107851 | None:intergenic | 35.0% | |
| AACTTGGTTGCTAAGAATTG+TGG | + | chr5_3:11107846-11107865 | None:intergenic | 35.0% | |
| ! | TGGAGATAGTTGATACAACT+TGG | + | chr5_3:11107862-11107881 | None:intergenic | 35.0% |
| CCCTTGCAATGTCTTTAATA+AGG | - | chr5_3:11108032-11108051 | Msa0798370:CDS | 35.0% | |
| ! | GCCTTATTAAAGACATTGCA+AGG | + | chr5_3:11108036-11108055 | None:intergenic | 35.0% |
| AGTGTCACACAAAACAACTA+TGG | - | chr5_3:11108100-11108119 | Msa0798370:CDS | 35.0% | |
| AGATACGCAAAAAGCTCTTT+CGG | + | chr5_3:11108265-11108284 | None:intergenic | 35.0% | |
| TGCGTATCTTCAAGAAATTG+CGG | - | chr5_3:11108276-11108295 | Msa0798370:CDS | 35.0% | |
| GGATACAAGACATTTCGTGT+TGG | - | chr5_3:11105575-11105594 | Msa0798370:CDS | 40.0% | |
| !! | AGACATTTCGTGTTGGTTCA+TGG | - | chr5_3:11105582-11105601 | Msa0798370:CDS | 40.0% |
| ATTGCTCTGTTGAAATCTGC+TGG | - | chr5_3:11105639-11105658 | Msa0798370:CDS | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5_3:11105855-11105874 | None:intergenic | 40.0% |
| AAGAAGCTTAGATCAGGAGA+AGG | + | chr5_3:11105897-11105916 | None:intergenic | 40.0% | |
| AGAGTCAAGAAGCTTAGATC+AGG | + | chr5_3:11105903-11105922 | None:intergenic | 40.0% | |
| GTCTATGCCAACTTCAAATC+AGG | - | chr5_3:11106246-11106265 | Msa0798370:intron | 40.0% | |
| !! | TAGTCTCATGACGGATACAA+AGG | - | chr5_3:11106376-11106395 | Msa0798370:intron | 40.0% |
| !! | AGTCTCATGACGGATACAAA+GGG | - | chr5_3:11106377-11106396 | Msa0798370:intron | 40.0% |
| GGAATAGGCTGTAGAGAATT+AGG | + | chr5_3:11107250-11107269 | None:intergenic | 40.0% | |
| GTAAGTTTCAAGACTGGAGT+TGG | + | chr5_3:11107277-11107296 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | - | chr5_3:11107758-11107777 | Msa0798370:intron | 40.0% | |
| CATAATCTTTGTGTCCAAGC+TGG | + | chr5_3:11107775-11107794 | None:intergenic | 40.0% | |
| AACATAAGCCAGTATACCTC+AGG | + | chr5_3:11107885-11107904 | None:intergenic | 40.0% | |
| TCACTCTGACATCATTAGCA+GGG | + | chr5_3:11108207-11108226 | None:intergenic | 40.0% | |
| ATCACTCTGACATCATTAGC+AGG | + | chr5_3:11108208-11108227 | None:intergenic | 40.0% | |
| GATTGTTGATGCTGATCACA+TGG | - | chr5_3:11108225-11108244 | Msa0798370:CDS | 40.0% | |
| GCGTATCTTCAAGAAATTGC+GGG | - | chr5_3:11108277-11108296 | Msa0798370:exon | 40.0% | |
| CGTATCTTCAAGAAATTGCG+GGG | - | chr5_3:11108278-11108297 | Msa0798370:exon | 40.0% | |
| GTATCTTCAAGAAATTGCGG+GGG | - | chr5_3:11108279-11108298 | Msa0798370:exon | 40.0% | |
| !! | AGGATAACTCTCTGGTCTTG+TGG | + | chr5_3:11105780-11105799 | None:intergenic | 45.0% |
| AGACCAGAGAGTTATCCTAG+TGG | - | chr5_3:11105782-11105801 | Msa0798370:CDS | 45.0% | |
| GACCAGAGAGTTATCCTAGT+GGG | - | chr5_3:11105783-11105802 | Msa0798370:CDS | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5_3:11105795-11105814 | Msa0798370:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5_3:11105799-11105818 | Msa0798370:CDS | 45.0% |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5_3:11105815-11105834 | Msa0798370:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5_3:11105821-11105840 | Msa0798370:CDS | 45.0% | |
| CTTCTTGACTCTTCTCCAAG+AGG | - | chr5_3:11105911-11105930 | Msa0798370:intron | 45.0% | |
| TTAACCAAACCGACCGATAG+AGG | - | chr5_3:11106212-11106231 | Msa0798370:intron | 45.0% | |
| TAAACCTCTATCGGTCGGTT+TGG | + | chr5_3:11106219-11106238 | None:intergenic | 45.0% | |
| TTCAAGACTGGAGTTGGGTT+GGG | + | chr5_3:11107271-11107290 | None:intergenic | 45.0% | |
| TTTCAAGACTGGAGTTGGGT+TGG | + | chr5_3:11107272-11107291 | None:intergenic | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | - | chr5_3:11107866-11107885 | Msa0798370:intron | 45.0% | |
| TATCTCCACCTGAGGTATAC+TGG | - | chr5_3:11107874-11107893 | Msa0798370:intron | 45.0% | |
| ATAAGCCAGTATACCTCAGG+TGG | + | chr5_3:11107882-11107901 | None:intergenic | 45.0% | |
| TGATCAGCAAAGCTACGAAC+AGG | + | chr5_3:11108058-11108077 | None:intergenic | 45.0% | |
| !! | CTCTTTCGGTTTGGAGAACA+TGG | + | chr5_3:11108251-11108270 | None:intergenic | 45.0% |
| CGCAAAAAGCTCTTTCGGTT+TGG | + | chr5_3:11108260-11108279 | None:intergenic | 45.0% | |
| !!! | AATTTGATAAAAAAAAATTT+TGG | + | chr5_3:11106655-11106674 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTTATCAAATT+TGG | - | chr5_3:11106655-11106674 | Msa0798370:intron | 5.0% |
| !!! | TTATATATATTTTTTTGAAA+TGG | - | chr5_3:11107987-11108006 | Msa0798370:CDS | 5.0% |
| TTGGTTCATGGAGCTTGCCA+TGG | - | chr5_3:11105594-11105613 | Msa0798370:CDS | 50.0% | |
| TGGTTCATGGAGCTTGCCAT+GGG | - | chr5_3:11105595-11105614 | Msa0798370:CDS | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | - | chr5_3:11105665-11105684 | Msa0798370:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | + | chr5_3:11105679-11105698 | None:intergenic | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | + | chr5_3:11105680-11105699 | None:intergenic | 50.0% | |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5_3:11105704-11105723 | None:intergenic | 50.0% |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5_3:11105704-11105723 | Msa0798370:CDS | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5_3:11105708-11105727 | None:intergenic | 50.0% | |
| GACCCACTAGGATAACTCTC+TGG | + | chr5_3:11105788-11105807 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5_3:11105800-11105819 | None:intergenic | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5_3:11105798-11105817 | Msa0798370:CDS | 50.0% |
| TACCTTGGGACACCTCTTGA+TGG | - | chr5_3:11106413-11106432 | Msa0798370:intron | 50.0% | |
| !! | TACCATCAAGAGGTGTCCCA+AGG | + | chr5_3:11106418-11106437 | None:intergenic | 50.0% |
| !! | ACTGGAGTTGGGTTGGGAAT+AGG | + | chr5_3:11107265-11107284 | None:intergenic | 50.0% |
| ACATTGCAAGGGACAAGTCC+TGG | + | chr5_3:11108024-11108043 | None:intergenic | 50.0% | |
| GGTTCATGGAGCTTGCCATG+GGG | - | chr5_3:11105596-11105615 | Msa0798370:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5_3:11105614-11105633 | None:intergenic | 55.0% | |
| ACCCTAGACATGGCTGCTTC+TGG | - | chr5_3:11105675-11105694 | Msa0798370:CDS | 55.0% | |
| ATGGAGCTTGCCATGGGGCA+TGG | - | chr5_3:11105601-11105620 | Msa0798370:CDS | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5_3:11105607-11105626 | Msa0798370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11105556 | 11108312 | 11105556 | ID=Msa0798370;Name=Msa0798370 |
| chr5_3 | mRNA | 11105556 | 11108312 | 11105556 | ID=Msa0798370-mRNA-1;Parent=Msa0798370;Name=Msa0798370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=17|1|0.66|1|1|1|3|0|260 |
| chr5_3 | exon | 11105556 | 11105843 | 11105556 | ID=Msa0798370-mRNA-1:exon:4634;Parent=Msa0798370-mRNA-1 |
| chr5_3 | exon | 11105981 | 11106115 | 11105981 | ID=Msa0798370-mRNA-1:exon:4633;Parent=Msa0798370-mRNA-1 |
| chr5_3 | exon | 11107936 | 11108312 | 11107936 | ID=Msa0798370-mRNA-1:exon:4632;Parent=Msa0798370-mRNA-1 |
| chr5_3 | five_prime_UTR | 11108296 | 11108312 | 11108296 | ID=Msa0798370-mRNA-1:five_prime_utr;Parent=Msa0798370-mRNA-1 |
| chr5_3 | CDS | 11107936 | 11108295 | 11107936 | ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1 |
| chr5_3 | CDS | 11105981 | 11106115 | 11105981 | ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1 |
| chr5_3 | CDS | 11105556 | 11105843 | 11105556 | ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
