AlfalfaGEDB | Msa0798370

M. sativa cultivar zhongmu-4 / Msa0798370

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798370	XP_003611830.1	96.923	260	8	0	1	260	1	260	0.0	526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798370	sp\|D7SSD8\|MJE1_VITVI	57.198	257	107	3	4	259	6	260	2.54e-106	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798370	G7K9E5	96.923	260	8	0	1	260	1	260	0.0	526

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0365490	Msa0798370	0.803650	3.150970e-49	-8.615850e-47
Msa0473240	Msa0798370	0.809696	1.665708e-50	-8.615850e-47
Msa0578970	Msa0798370	0.810768	9.778773e-51	-8.615850e-47
Msa0610590	Msa0798370	0.811428	7.036602e-51	-8.615850e-47
Msa0651190	Msa0798370	0.807584	4.705994e-50	-8.615850e-47
Msa0715490	Msa0798370	0.812530	4.047558e-51	-8.615850e-47
Msa0767080	Msa0798370	0.807379	5.203564e-50	-8.615850e-47
Msa0798370	Msa1091830	0.803013	4.268092e-49	-8.615850e-47
Msa0798370	Msa1116690	0.812138	4.930505e-51	-8.615850e-47
Msa0798370	Msa1175330	0.810845	9.412633e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798370	MtrunA17_Chr5g0402871	96.923	260	8	0	1	260	1	260	0.0	526
Msa0798370	MtrunA17_Chr5g0402851	87.938	257	31	0	4	260	7	263	4.40e-173	477
Msa0798370	MtrunA17_Chr5g0402841	83.270	263	40	2	1	260	1	262	1.02e-161	449
Msa0798370	MtrunA17_Chr8g0336391	53.077	260	120	2	1	259	23	281	4.04e-99	291
Msa0798370	MtrunA17_Chr8g0336401	53.053	262	118	4	2	259	24	284	7.44e-93	275
Msa0798370	MtrunA17_Chr8g0336411	50.385	260	126	3	1	259	24	281	5.40e-90	268
Msa0798370	MtrunA17_Chr3g0104871	48.846	260	128	3	1	259	15	270	1.30e-87	261
Msa0798370	MtrunA17_Chr8g0336441	48.649	259	128	3	2	259	24	278	2.70e-87	261
Msa0798370	MtrunA17_Chr8g0336381	45.736	258	137	3	4	259	6	262	2.15e-79	240
Msa0798370	MtrunA17_Chr8g0374141	45.736	258	131	4	4	259	52	302	3.11e-74	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798370	AT2G23610.1	45.211	261	132	5	4	259	8	262	1.29e-75	231
Msa0798370	AT2G23560.1	46.768	263	127	6	2	259	5	259	7.00e-75	229
Msa0798370	AT3G50440.1	42.969	256	141	3	6	259	22	274	4.38e-73	224
Msa0798370	AT2G23620.1	42.412	257	145	2	4	259	8	262	1.25e-71	221
Msa0798370	AT2G23580.1	45.247	263	134	6	2	259	5	262	9.46e-71	218
Msa0798370	AT2G23600.1	41.245	257	148	2	4	259	8	262	3.56e-68	212
Msa0798370	AT4G37150.1	42.748	262	136	6	4	259	2	255	5.00e-68	211
Msa0798370	AT2G23600.2	41.245	257	148	2	4	259	23	277	6.02e-68	212
Msa0798370	AT2G23550.4	43.726	263	138	6	2	259	12	269	8.04e-66	206
Msa0798370	AT2G23550.1	43.726	263	138	6	2	259	5	262	9.51e-66	206

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Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATTTGGTTTATCATTA+GGG	0.239611	5_3:+11106040	None:intergenic
AACCGTTGATTGAATTTCTA+AGG	0.235120	5_3:-11108098	Msa0798370:CDS
AACTTGGTTGCTAAGAATTG+TGG	0.545480	5_3:+11106003	None:intergenic
AAGAAGCTTAGATCAGGAGA+AGG	0.607709	5_3:+11107952	None:intergenic
ACAAAGATTGGATTCCAGCT+TGG	0.525705	5_3:-11106088	Msa0798370:CDS
ACCCTAGACATGGCTGCTTC+TGG	0.309439	5_3:-11108171	Msa0798370:CDS
AGACATTTCGTGTTGGTTCA+TGG	0.351633	5_3:-11108264	Msa0798370:CDS
AGACCAGAGAGTTATCCTAG+TGG	0.747538	5_3:-11108064	Msa0798370:CDS
AGAGTCAAGAAGCTTAGATC+AGG	0.464438	5_3:+11107946	None:intergenic
AGCCCTAATGATAAACCAAA+TGG	0.509653	5_3:-11106042	Msa0798370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACCTTAGAAATTCAATCAA+CGG	+	chr5_3:11105753-11105772	None:intergenic	30.0%
AGCAATAATTTAGTACCTCT+TGG	+	chr5_3:11105929-11105948	None:intergenic	30.0%
TCATAATAACGTAGCATATG+TGG	-	chr5_3:11106045-11106064	Msa0798370:CDS	30.0%
GTAAGCTATATGAATACCTT+GGG	-	chr5_3:11106399-11106418	Msa0798370:intron	30.0%
GAGCTAAAAATTTAACTGCA+TGG	-	chr5_3:11106743-11106762	Msa0798370:intron	30.0%
ACAGAGAACAAATCTTTCAT+TGG	-	chr5_3:11107184-11107203	Msa0798370:intron	30.0%
GCGATCACTAATAAACAAAT+AGG	-	chr5_3:11107335-11107354	Msa0798370:intron	30.0%
CACTAATAAACAAATAGGAG+TGG	-	chr5_3:11107340-11107359	Msa0798370:intron	30.0%
ATTGCAGTATCAACAAAGAT+TGG	-	chr5_3:11107746-11107765	Msa0798370:intron	30.0%
GAAATGGTTATATATGAACC+AGG	-	chr5_3:11108003-11108022	Msa0798370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	11105556	11108312	11105556	ID=Msa0798370;Name=Msa0798370
chr5_3	mRNA	11105556	11108312	11105556	ID=Msa0798370-mRNA-1;Parent=Msa0798370;Name=Msa0798370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=17\|1\|0.66\|1\|1\|1\|3\|0\|260
chr5_3	exon	11105556	11105843	11105556	ID=Msa0798370-mRNA-1:exon:4634;Parent=Msa0798370-mRNA-1
chr5_3	exon	11105981	11106115	11105981	ID=Msa0798370-mRNA-1:exon:4633;Parent=Msa0798370-mRNA-1
chr5_3	exon	11107936	11108312	11107936	ID=Msa0798370-mRNA-1:exon:4632;Parent=Msa0798370-mRNA-1
chr5_3	five_prime_UTR	11108296	11108312	11108296	ID=Msa0798370-mRNA-1:five_prime_utr;Parent=Msa0798370-mRNA-1
chr5_3	CDS	11107936	11108295	11107936	ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1
chr5_3	CDS	11105981	11106115	11105981	ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1
chr5_3	CDS	11105556	11105843	11105556	ID=Msa0798370-mRNA-1:cds;Parent=Msa0798370-mRNA-1

Gene Sequence

>Msa0798370

ATGGATACAAGACATTTCGTGTTGGTTCATGGAGCTTGCCATGGGGCATGGTGTTGGTACAAGATTATTGCTCTGTTGAAATCTGCTGGACACGAAGTCACAACCCTAGACATGGCTGCTTCTGGAATCCATCCAAAGCAAGTGCATGAGCTGGATTCTGTCACAGATTATTGTGAACCGTTGATTGAATTTCTAAGGTCACTGCCACAAGACCAGAGAGTTATCCTAGTGGGTCATAGCTTAGGTGGGATGTGTATATCTGTGGCCATGGAATTATTTCCTAACAAAATTGCAGCTGCTGTATTTGTTGCAGCTTTCATGCCTTCTCCTGATCTAAGCTTCTTGACTCTTCTCCAAGAGTATCAACAAAGATTGGATTCCAGCTTGGACACAAAGATTATGTTTGATGATAGCCCTAATGATAAACCAAATGGTTCCATGTTATTTGGACCACAATTCTTAGCAACCAAGTTGTATCAACTATCTCCACCTGAGGACTTGTCCCTTGCAATGTCTTTAATAAGGCCTGTTCGTAGCTTTGCTGATCAAGAACTATTAGGAGAGAAAACAAGTGTCACACAAAACAACTATGGAACTGTTGCAAAAGTCTACATTGTATGCCAACAAGACAAAGTGTTAAAACATGATTTTCAGCTATCAATGATTGAAAGAAACCCTGCTAATGATGTCAGAGTGATTGTTGATGCTGATCACATGGCCATGTTCTCCAAACCGAAAGAGCTTTTTGCGTATCTTCAAGAAATTGCGGGGGCATATTATTAG

Protein sequence

>Msa0798370

MDTRHFVLVHGACHGAWCWYKIIALLKSAGHEVTTLDMAASGIHPKQVHELDSVTDYCEPLIEFLRSLPQDQRVILVGHSLGGMCISVAMELFPNKIAAAVFVAAFMPSPDLSFLTLLQEYQQRLDSSLDTKIMFDDSPNDKPNGSMLFGPQFLATKLYQLSPPEDLSLAMSLIRPVRSFADQELLGEKTSVTQNNYGTVAKVYIVCQQDKVLKHDFQLSMIERNPANDVRVIVDADHMAMFSKPKELFAYLQEIAGAYY*