Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716120 | XP_003611911.1 | 91.358 | 243 | 14 | 3 | 1 | 240 | 1 | 239 | 6.13e-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716120 | sp|Q09463|RNF5_CAEEL | 33.878 | 245 | 129 | 7 | 15 | 238 | 2 | 234 | 1.05e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716120 | G7KAV6 | 91.358 | 243 | 14 | 3 | 1 | 240 | 1 | 239 | 2.93e-136 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0716120 | Msa1407370 | 0.822472 | 2.326582e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716120 | MtrunA17_Chr5g0403521 | 91.358 | 243 | 14 | 3 | 1 | 240 | 1 | 239 | 5.64e-140 | 392 |
| Msa0716120 | MtrunA17_Chr1g0154561 | 58.294 | 211 | 76 | 6 | 35 | 238 | 28 | 233 | 1.55e-69 | 213 |
| Msa0716120 | MtrunA17_Chr1g0175571 | 51.724 | 87 | 41 | 1 | 39 | 124 | 122 | 208 | 3.45e-29 | 109 |
| Msa0716120 | MtrunA17_Chr4g0021321 | 42.400 | 125 | 60 | 3 | 20 | 132 | 25 | 149 | 1.94e-28 | 108 |
| Msa0716120 | MtrunA17_Chr2g0324291 | 50.000 | 90 | 40 | 2 | 37 | 121 | 28 | 117 | 2.45e-28 | 105 |
| Msa0716120 | MtrunA17_Chr2g0324281 | 49.000 | 100 | 34 | 2 | 20 | 119 | 11 | 93 | 4.35e-28 | 105 |
| Msa0716120 | MtrunA17_Chr7g0258821 | 51.087 | 92 | 43 | 1 | 34 | 125 | 165 | 254 | 2.48e-27 | 108 |
| Msa0716120 | MtrunA17_Chr8g0360011 | 51.648 | 91 | 37 | 2 | 34 | 117 | 30 | 120 | 6.42e-27 | 104 |
| Msa0716120 | MtrunA17_Chr1g0175641 | 51.190 | 84 | 38 | 3 | 39 | 120 | 76 | 158 | 3.42e-26 | 100 |
| Msa0716120 | MtrunA17_Chr2g0324261 | 42.373 | 118 | 56 | 3 | 10 | 119 | 15 | 128 | 5.35e-26 | 101 |
| Msa0716120 | MtrunA17_Chr1g0175871 | 39.850 | 133 | 62 | 4 | 5 | 119 | 13 | 145 | 3.39e-25 | 98.2 |
| Msa0716120 | MtrunA17_Chr4g0047381 | 45.918 | 98 | 42 | 3 | 39 | 125 | 31 | 128 | 1.74e-22 | 92.0 |
| Msa0716120 | MtrunA17_Chr4g0047371 | 40.351 | 114 | 56 | 3 | 24 | 125 | 15 | 128 | 2.15e-22 | 90.9 |
| Msa0716120 | MtrunA17_Chr2g0282171 | 45.833 | 96 | 42 | 3 | 39 | 125 | 27 | 121 | 3.63e-22 | 91.3 |
| Msa0716120 | MtrunA17_Chr2g0308681 | 39.773 | 88 | 52 | 1 | 39 | 125 | 107 | 194 | 4.57e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716120 | AT2G23780.3 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.89e-89 | 262 |
| Msa0716120 | AT2G23780.2 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.89e-89 | 262 |
| Msa0716120 | AT2G23780.1 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.89e-89 | 262 |
| Msa0716120 | AT1G19310.1 | 57.212 | 208 | 80 | 5 | 21 | 222 | 5 | 209 | 3.34e-74 | 225 |
| Msa0716120 | AT1G74990.1 | 50.746 | 134 | 61 | 4 | 27 | 157 | 4 | 135 | 3.53e-41 | 138 |
| Msa0716120 | AT4G27470.1 | 45.283 | 106 | 44 | 3 | 34 | 128 | 37 | 139 | 3.12e-26 | 102 |
| Msa0716120 | AT4G03510.3 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.41e-25 | 100 |
| Msa0716120 | AT4G03510.1 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.41e-25 | 100 |
| Msa0716120 | AT4G03510.2 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.41e-25 | 100 |
| Msa0716120 | AT4G03510.4 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.41e-25 | 100 |
| Msa0716120 | AT4G28270.1 | 47.917 | 96 | 31 | 4 | 37 | 119 | 17 | 106 | 2.37e-24 | 96.3 |
| Msa0716120 | AT3G58030.4 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.60e-23 | 98.6 |
| Msa0716120 | AT3G58030.2 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.60e-23 | 98.6 |
| Msa0716120 | AT3G58030.1 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.60e-23 | 98.6 |
| Msa0716120 | AT3G58030.3 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.60e-23 | 98.6 |
| Msa0716120 | AT2G42030.1 | 44.828 | 87 | 45 | 2 | 39 | 125 | 139 | 222 | 3.51e-23 | 97.4 |
| Msa0716120 | AT2G44410.1 | 40.659 | 91 | 51 | 2 | 37 | 125 | 121 | 210 | 8.84e-19 | 84.7 |
Find 71 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGGATGCTACTGTTTA+TGG | 0.167323 | 5_1:-9533251 | Msa0716120:CDS |
| GAGAAATTGGTGCCTCTTTA+TGG | 0.188488 | 5_1:-9533521 | Msa0716120:CDS |
| ATTTGGGTTCAACGGGTTTC+AGG | 0.247980 | 5_1:-9533210 | Msa0716120:CDS |
| TTTGTTGGCCATGTCTTTAT+AGG | 0.254637 | 5_1:-9533604 | Msa0716120:CDS |
| ACAACTTCTGGTTATCCATT+TGG | 0.261632 | 5_1:-9533227 | Msa0716120:CDS |
| ACTGTTTATGGGACAACTTC+TGG | 0.273010 | 5_1:-9533239 | Msa0716120:CDS |
| CAACTTCTGGTTATCCATTT+GGG | 0.287027 | 5_1:-9533226 | Msa0716120:CDS |
| ACTTGTTCAGGAAGAGAAAT+TGG | 0.291213 | 5_1:-9533534 | Msa0716120:CDS |
| CTTATGAATATACACTTTCA+TGG | 0.293268 | 5_1:-9533275 | Msa0716120:CDS |
| TACTGCTGGGATTGGATTGA+TGG | 0.307850 | 5_1:-9533375 | Msa0716120:CDS |
| AGAGAAATGTCTCGACGTTT+TGG | 0.313707 | 5_1:-9533788 | None:intergenic |
| AAGAATTTGCTTATGCTGAT+TGG | 0.345800 | 5_1:-9533119 | Msa0716120:CDS |
| GAGATTCCTCGCCGTCCTTC+CGG | 0.353413 | 5_1:-9533449 | Msa0716120:CDS |
| CCGATGGCTACTGCTAGATT+TGG | 0.354815 | 5_1:-9533341 | Msa0716120:CDS |
| TTGTTATGAGGTGGTGGATT+TGG | 0.357347 | 5_1:+9533407 | None:intergenic |
| TTCAGGATGCTACTGTTTAT+GGG | 0.361416 | 5_1:-9533250 | Msa0716120:CDS |
| CACGGTTTGCGGCCTCTGTC+CGG | 0.368605 | 5_1:+9533430 | None:intergenic |
| CCCGGATACGATTTAGTTCT+CGG | 0.381612 | 5_1:+9533476 | None:intergenic |
| CCAAACCCATCATGTTCATC+AGG | 0.401623 | 5_1:-9533728 | Msa0716120:CDS |
| AAACAGGACATTCTTGTGAA+TGG | 0.407657 | 5_1:+9533564 | None:intergenic |
| GGTTTCAATTCGCAAGCAAC+AGG | 0.415216 | 5_1:-9533173 | Msa0716120:CDS |
| TTTGGGTTCAACGGGTTTCA+GGG | 0.418547 | 5_1:-9533209 | Msa0716120:CDS |
| TGAACAAGTGCTTTACAAAC+AGG | 0.427996 | 5_1:+9533548 | None:intergenic |
| GGTGGATTTGGCACGGTTTG+CGG | 0.428724 | 5_1:+9533419 | None:intergenic |
| CCTGATGAACATGATGGGTT+TGG | 0.431554 | 5_1:+9533728 | None:intergenic |
| TCCGAGAACTAAATCGTATC+CGG | 0.438729 | 5_1:-9533477 | Msa0716120:CDS |
| TGTTTGTAAAGCACTTGTTC+AGG | 0.444996 | 5_1:-9533546 | Msa0716120:CDS |
| AACAGGACATTCTTGTGAAT+GGG | 0.451065 | 5_1:+9533565 | None:intergenic |
| GTTATCCATTTGGGTTCAAC+GGG | 0.454746 | 5_1:-9533217 | Msa0716120:CDS |
| TGAAACCCGTTGAACCCAAA+TGG | 0.458530 | 5_1:+9533212 | None:intergenic |
| ACTGCTGGGATTGGATTGAT+GGG | 0.466877 | 5_1:-9533374 | Msa0716120:CDS |
| GGTTCAACGGGTTTCAGGGT+GGG | 0.474844 | 5_1:-9533205 | Msa0716120:CDS |
| GGTTATCCATTTGGGTTCAA+CGG | 0.476182 | 5_1:-9533218 | Msa0716120:CDS |
| AACTAAATCGTATCCGGGGA+TGG | 0.476536 | 5_1:-9533471 | Msa0716120:CDS |
| TGGATTTCTAGTCCTTCTTA+CGG | 0.485784 | 5_1:-9533099 | Msa0716120:CDS |
| CTCCCATTGTTATGAGGTGG+TGG | 0.489584 | 5_1:+9533401 | None:intergenic |
| GATGAACATGATGGGTTTGG+TGG | 0.500767 | 5_1:+9533731 | None:intergenic |
| ATCCACCACCTCATAACAAT+GGG | 0.503935 | 5_1:-9533403 | Msa0716120:CDS |
| TTGGTGCCTCTTTATGGTAG+AGG | 0.505266 | 5_1:-9533515 | Msa0716120:CDS |
| GTTGGCCATGTCTTTATAGG+TGG | 0.509894 | 5_1:-9533601 | Msa0716120:CDS |
| AACAGGACAAGTGCAACGGC+AGG | 0.523959 | 5_1:-9533156 | Msa0716120:CDS |
| TCAAAATCGCCGACATCACC+AGG | 0.524501 | 5_1:+9533686 | None:intergenic |
| CCGAGAACTAAATCGTATCC+GGG | 0.524662 | 5_1:-9533476 | Msa0716120:CDS |
| GACATCACCAGGATCATTGT+TGG | 0.526868 | 5_1:+9533697 | None:intergenic |
| GTAAAACTCCCATTGTTATG+AGG | 0.528292 | 5_1:+9533395 | None:intergenic |
| AACAGTTCCAACAATGATCC+TGG | 0.528306 | 5_1:-9533704 | Msa0716120:CDS |
| GCGGCCTCTGTCCGGAAGGA+CGG | 0.532356 | 5_1:+9533438 | None:intergenic |
| GATCCAGTGATCACACTTTG+TGG | 0.540983 | 5_1:-9533635 | Msa0716120:CDS |
| GCTGGGATTGGATTGATGGG+TGG | 0.551373 | 5_1:-9533371 | Msa0716120:CDS |
| GATGGGTGGATTTCTTCCGA+TGG | 0.553310 | 5_1:-9533357 | Msa0716120:CDS |
| AACAATGATCCTGGTGATGT+CGG | 0.558946 | 5_1:-9533695 | Msa0716120:CDS |
| AGTGTATATTCATAAGTGAC+GGG | 0.559818 | 5_1:+9533282 | None:intergenic |
| TGACCACAAAGTGTGATCAC+TGG | 0.563476 | 5_1:+9533632 | None:intergenic |
| TTTCAGGGTGGGAATGCGAG+AGG | 0.574157 | 5_1:-9533194 | Msa0716120:CDS |
| GTTTGCGGCCTCTGTCCGGA+AGG | 0.581142 | 5_1:+9533434 | None:intergenic |
| CTGTTCCCTGATGAACATGA+TGG | 0.583916 | 5_1:+9533722 | None:intergenic |
| AAGTGTATATTCATAAGTGA+CGG | 0.583974 | 5_1:+9533281 | None:intergenic |
| GGGTTCAACGGGTTTCAGGG+TGG | 0.588862 | 5_1:-9533206 | Msa0716120:CDS |
| CGGCGAGGAATCTCCATCCC+CGG | 0.591217 | 5_1:+9533458 | None:intergenic |
| CTCGCCGTCCTTCCGGACAG+AGG | 0.603395 | 5_1:-9533442 | Msa0716120:CDS |
| AATCCACCACCTCATAACAA+TGG | 0.603432 | 5_1:-9533404 | Msa0716120:CDS |
| AAGCAACAGGACAAGTGCAA+CGG | 0.621601 | 5_1:-9533160 | Msa0716120:CDS |
| CTCTGTCCGGAAGGACGGCG+AGG | 0.628222 | 5_1:+9533443 | None:intergenic |
| AGGACAAGTGCAACGGCAGG+AGG | 0.631148 | 5_1:-9533153 | Msa0716120:CDS |
| ATGAGGTGGTGGATTTGGCA+CGG | 0.635103 | 5_1:+9533412 | None:intergenic |
| AAACTCCCATTGTTATGAGG+TGG | 0.636988 | 5_1:+9533398 | None:intergenic |
| CAAACCCATCATGTTCATCA+GGG | 0.650075 | 5_1:-9533727 | Msa0716120:CDS |
| CCAAATCTAGCAGTAGCCAT+CGG | 0.653472 | 5_1:+9533341 | None:intergenic |
| TGTTCCCTGATGAACATGAT+GGG | 0.680660 | 5_1:+9533723 | None:intergenic |
| TGTAACCACCTATAAAGACA+TGG | 0.687496 | 5_1:+9533596 | None:intergenic |
| CGAGAACTAAATCGTATCCG+GGG | 0.687817 | 5_1:-9533475 | Msa0716120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAACATATGTTTTGATT+TGG | - | chr5_1:9533201-9533220 | Msa0716120:CDS | 20.0% |
| !!! | TTTGTGGTCATTTATTTTGT+TGG | - | chr5_1:9533245-9533264 | Msa0716120:CDS | 25.0% |
| ! | AAGTGTATATTCATAAGTGA+CGG | + | chr5_1:9533586-9533605 | None:intergenic | 25.0% |
| ! | CTTATGAATATACACTTTCA+TGG | - | chr5_1:9533589-9533608 | Msa0716120:CDS | 25.0% |
| ! | TAAAAAAGATAACCGTAAGA+AGG | + | chr5_1:9533780-9533799 | None:intergenic | 25.0% |
| AGTGTATATTCATAAGTGAC+GGG | + | chr5_1:9533585-9533604 | None:intergenic | 30.0% | |
| ! | TATACACTTTCATGGTTTTC+AGG | - | chr5_1:9533597-9533616 | Msa0716120:CDS | 30.0% |
| ! | AAGAATTTGCTTATGCTGAT+TGG | - | chr5_1:9533745-9533764 | Msa0716120:CDS | 30.0% |
| !!! | CATATGTTTTGATTTGGCAC+AGG | - | chr5_1:9533207-9533226 | Msa0716120:CDS | 35.0% |
| TTTGTTGGCCATGTCTTTAT+AGG | - | chr5_1:9533260-9533279 | Msa0716120:CDS | 35.0% | |
| TGTAACCACCTATAAAGACA+TGG | + | chr5_1:9533271-9533290 | None:intergenic | 35.0% | |
| AACAGGACATTCTTGTGAAT+GGG | + | chr5_1:9533302-9533321 | None:intergenic | 35.0% | |
| AAACAGGACATTCTTGTGAA+TGG | + | chr5_1:9533303-9533322 | None:intergenic | 35.0% | |
| TGAACAAGTGCTTTACAAAC+AGG | + | chr5_1:9533319-9533338 | None:intergenic | 35.0% | |
| ! | TGTTTGTAAAGCACTTGTTC+AGG | - | chr5_1:9533318-9533337 | Msa0716120:CDS | 35.0% |
| ACTTGTTCAGGAAGAGAAAT+TGG | - | chr5_1:9533330-9533349 | Msa0716120:CDS | 35.0% | |
| ! | GTTTTTCCTCTACCATAAAG+AGG | + | chr5_1:9533358-9533377 | None:intergenic | 35.0% |
| GTAAAACTCCCATTGTTATG+AGG | + | chr5_1:9533472-9533491 | None:intergenic | 35.0% | |
| ! | TGGAAACTTTTCGTTTTCGA+CGG | - | chr5_1:9533543-9533562 | Msa0716120:CDS | 35.0% |
| TTTCAGGATGCTACTGTTTA+TGG | - | chr5_1:9533613-9533632 | Msa0716120:CDS | 35.0% | |
| TTCAGGATGCTACTGTTTAT+GGG | - | chr5_1:9533614-9533633 | Msa0716120:CDS | 35.0% | |
| ! | ACAACTTCTGGTTATCCATT+TGG | - | chr5_1:9533637-9533656 | Msa0716120:CDS | 35.0% |
| ! | CAACTTCTGGTTATCCATTT+GGG | - | chr5_1:9533638-9533657 | Msa0716120:CDS | 35.0% |
| !! | TGGATTTCTAGTCCTTCTTA+CGG | - | chr5_1:9533765-9533784 | Msa0716120:CDS | 35.0% |
| CAAACCCATCATGTTCATCA+GGG | - | chr5_1:9533137-9533156 | Msa0716120:CDS | 40.0% | |
| TGTTCCCTGATGAACATGAT+GGG | + | chr5_1:9533144-9533163 | None:intergenic | 40.0% | |
| AACAGTTCCAACAATGATCC+TGG | - | chr5_1:9533160-9533179 | Msa0716120:CDS | 40.0% | |
| ! | AACAATGATCCTGGTGATGT+CGG | - | chr5_1:9533169-9533188 | Msa0716120:CDS | 40.0% |
| ! | GAGAAATTGGTGCCTCTTTA+TGG | - | chr5_1:9533343-9533362 | Msa0716120:CDS | 40.0% |
| TCCGAGAACTAAATCGTATC+CGG | - | chr5_1:9533387-9533406 | Msa0716120:CDS | 40.0% | |
| !! | TTGTTATGAGGTGGTGGATT+TGG | + | chr5_1:9533460-9533479 | None:intergenic | 40.0% |
| AATCCACCACCTCATAACAA+TGG | - | chr5_1:9533460-9533479 | Msa0716120:CDS | 40.0% | |
| ATCCACCACCTCATAACAAT+GGG | - | chr5_1:9533461-9533480 | Msa0716120:CDS | 40.0% | |
| AAACTCCCATTGTTATGAGG+TGG | + | chr5_1:9533469-9533488 | None:intergenic | 40.0% | |
| ! | AACAATGGGAGTTTTACTGC+TGG | - | chr5_1:9533475-9533494 | Msa0716120:CDS | 40.0% |
| ! | ACAATGGGAGTTTTACTGCT+GGG | - | chr5_1:9533476-9533495 | Msa0716120:CDS | 40.0% |
| ! | GGAAACTTTTCGTTTTCGAC+GGG | - | chr5_1:9533544-9533563 | Msa0716120:CDS | 40.0% |
| !! | TTTTCGTTTTCGACGGGTTT+TGG | - | chr5_1:9533550-9533569 | Msa0716120:CDS | 40.0% |
| ACTGTTTATGGGACAACTTC+TGG | - | chr5_1:9533625-9533644 | Msa0716120:CDS | 40.0% | |
| ! | GGTTATCCATTTGGGTTCAA+CGG | - | chr5_1:9533646-9533665 | Msa0716120:CDS | 40.0% |
| ! | GTTATCCATTTGGGTTCAAC+GGG | - | chr5_1:9533647-9533666 | Msa0716120:CDS | 40.0% |
| !!! | TCTCGACGTTTTGGAGAATC+AGG | - | chr5_1:9533085-9533104 | Msa0716120:CDS | 45.0% |
| !! | GATGAACATGATGGGTTTGG+TGG | + | chr5_1:9533136-9533155 | None:intergenic | 45.0% |
| !! | CCTGATGAACATGATGGGTT+TGG | + | chr5_1:9533139-9533158 | None:intergenic | 45.0% |
| CCAAACCCATCATGTTCATC+AGG | - | chr5_1:9533136-9533155 | Msa0716120:CDS | 45.0% | |
| CTGTTCCCTGATGAACATGA+TGG | + | chr5_1:9533145-9533164 | None:intergenic | 45.0% | |
| GACATCACCAGGATCATTGT+TGG | + | chr5_1:9533170-9533189 | None:intergenic | 45.0% | |
| GATCCAGTGATCACACTTTG+TGG | - | chr5_1:9533229-9533248 | Msa0716120:CDS | 45.0% | |
| TGACCACAAAGTGTGATCAC+TGG | + | chr5_1:9533235-9533254 | None:intergenic | 45.0% | |
| GTTGGCCATGTCTTTATAGG+TGG | - | chr5_1:9533263-9533282 | Msa0716120:CDS | 45.0% | |
| ! | TTGGTGCCTCTTTATGGTAG+AGG | - | chr5_1:9533349-9533368 | Msa0716120:CDS | 45.0% |
| TGGTAGAGGAAAAACGCAGA+CGG | - | chr5_1:9533363-9533382 | Msa0716120:CDS | 45.0% | |
| !! | CCCGGATACGATTTAGTTCT+CGG | + | chr5_1:9533391-9533410 | None:intergenic | 45.0% |
| CCGAGAACTAAATCGTATCC+GGG | - | chr5_1:9533388-9533407 | Msa0716120:CDS | 45.0% | |
| CGAGAACTAAATCGTATCCG+GGG | - | chr5_1:9533389-9533408 | Msa0716120:CDS | 45.0% | |
| AACTAAATCGTATCCGGGGA+TGG | - | chr5_1:9533393-9533412 | Msa0716120:CDS | 45.0% | |
| TACTGCTGGGATTGGATTGA+TGG | - | chr5_1:9533489-9533508 | Msa0716120:CDS | 45.0% | |
| ACTGCTGGGATTGGATTGAT+GGG | - | chr5_1:9533490-9533509 | Msa0716120:CDS | 45.0% | |
| CCAAATCTAGCAGTAGCCAT+CGG | + | chr5_1:9533526-9533545 | None:intergenic | 45.0% | |
| TGAAACCCGTTGAACCCAAA+TGG | + | chr5_1:9533655-9533674 | None:intergenic | 45.0% | |
| ! | ATTTGGGTTCAACGGGTTTC+AGG | - | chr5_1:9533654-9533673 | Msa0716120:CDS | 45.0% |
| ! | TTTGGGTTCAACGGGTTTCA+GGG | - | chr5_1:9533655-9533674 | Msa0716120:CDS | 45.0% |
| GGTTTCAATTCGCAAGCAAC+AGG | - | chr5_1:9533691-9533710 | Msa0716120:CDS | 45.0% | |
| AAGCAACAGGACAAGTGCAA+CGG | - | chr5_1:9533704-9533723 | Msa0716120:CDS | 45.0% | |
| TCAAAATCGCCGACATCACC+AGG | + | chr5_1:9533181-9533200 | None:intergenic | 50.0% | |
| !! | ATGAGGTGGTGGATTTGGCA+CGG | + | chr5_1:9533455-9533474 | None:intergenic | 50.0% |
| CTCCCATTGTTATGAGGTGG+TGG | + | chr5_1:9533466-9533485 | None:intergenic | 50.0% | |
| ! | GGGAGTTTTACTGCTGGGAT+TGG | - | chr5_1:9533481-9533500 | Msa0716120:CDS | 50.0% |
| ! | GATGGGTGGATTTCTTCCGA+TGG | - | chr5_1:9533507-9533526 | Msa0716120:CDS | 50.0% |
| CCGATGGCTACTGCTAGATT+TGG | - | chr5_1:9533523-9533542 | Msa0716120:CDS | 50.0% | |
| !! | TCGTTTTCGACGGGTTTTGG+TGG | - | chr5_1:9533553-9533572 | Msa0716120:CDS | 50.0% |
| !! | CGTTTTCGACGGGTTTTGGT+GGG | - | chr5_1:9533554-9533573 | Msa0716120:CDS | 50.0% |
| ! | GGTGGATTTGGCACGGTTTG+CGG | + | chr5_1:9533448-9533467 | None:intergenic | 55.0% |
| GCTGGGATTGGATTGATGGG+TGG | - | chr5_1:9533493-9533512 | Msa0716120:CDS | 55.0% | |
| ! | GGTTCAACGGGTTTCAGGGT+GGG | - | chr5_1:9533659-9533678 | Msa0716120:CDS | 55.0% |
| TTTCAGGGTGGGAATGCGAG+AGG | - | chr5_1:9533670-9533689 | Msa0716120:CDS | 55.0% | |
| AACAGGACAAGTGCAACGGC+AGG | - | chr5_1:9533708-9533727 | Msa0716120:CDS | 55.0% | |
| GAGATTCCTCGCCGTCCTTC+CGG | - | chr5_1:9533415-9533434 | Msa0716120:CDS | 60.0% | |
| ! | GGGTTCAACGGGTTTCAGGG+TGG | - | chr5_1:9533658-9533677 | Msa0716120:CDS | 60.0% |
| AGGACAAGTGCAACGGCAGG+AGG | - | chr5_1:9533711-9533730 | Msa0716120:CDS | 60.0% | |
| CGGCGAGGAATCTCCATCCC+CGG | + | chr5_1:9533409-9533428 | None:intergenic | 65.0% | |
| GTTTGCGGCCTCTGTCCGGA+AGG | + | chr5_1:9533433-9533452 | None:intergenic | 65.0% | |
| CACGGTTTGCGGCCTCTGTC+CGG | + | chr5_1:9533437-9533456 | None:intergenic | 65.0% | |
| CTCTGTCCGGAAGGACGGCG+AGG | + | chr5_1:9533424-9533443 | None:intergenic | 70.0% | |
| CTCGCCGTCCTTCCGGACAG+AGG | - | chr5_1:9533422-9533441 | Msa0716120:CDS | 70.0% | |
| GCGGCCTCTGTCCGGAAGGA+CGG | + | chr5_1:9533429-9533448 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9533082 | 9533804 | 9533082 | ID=Msa0716120;Name=Msa0716120 |
| chr5_1 | mRNA | 9533082 | 9533804 | 9533082 | ID=Msa0716120-mRNA-1;Parent=Msa0716120;Name=Msa0716120-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|240 |
| chr5_1 | exon | 9533082 | 9533804 | 9533082 | ID=Msa0716120-mRNA-1:exon:3823;Parent=Msa0716120-mRNA-1 |
| chr5_1 | CDS | 9533082 | 9533804 | 9533082 | ID=Msa0716120-mRNA-1:cds;Parent=Msa0716120-mRNA-1 |
| Gene Sequence |
| Protein sequence |