AlfalfaGEDB | Msa1407370

M. sativa cultivar zhongmu-4 / Msa1407370

KEGG: K10666
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698
PFAM: PF13923.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	XP_003611911.1	91.358	243	14	3	1	240	1	239	6.13e-136	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	sp\|Q09463\|RNF5_CAEEL	33.878	245	129	7	15	238	2	234	1.05e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	G7KAV6	91.358	243	14	3	1	240	1	239	2.93e-136	392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024400	Msa1407370	0.810895	9.180900e-51	-8.615850e-47
Msa0110220	Msa1407370	0.806884	6.623274e-50	-8.615850e-47
Msa0163510	Msa1407370	0.812830	3.480627e-51	-8.615850e-47
Msa0186540	Msa1407370	0.831522	1.591224e-55	-8.615850e-47
Msa0231800	Msa1407370	0.813240	2.829074e-51	-8.615850e-47
Msa0237320	Msa1407370	0.804680	1.923465e-49	-8.615850e-47
Msa0256140	Msa1407370	0.820323	7.287132e-53	-8.615850e-47
Msa0259680	Msa1407370	0.819633	1.048221e-52	-8.615850e-47
Msa0274740	Msa1407370	0.809309	2.016271e-50	-8.615850e-47
Msa0341480	Msa1407370	0.808803	2.588027e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	MtrunA17_Chr5g0403521	91.358	243	14	3	1	240	1	239	5.64e-140	392
Msa1407370	MtrunA17_Chr1g0154561	58.294	211	76	6	35	238	28	233	1.55e-69	213
Msa1407370	MtrunA17_Chr1g0175571	51.724	87	41	1	39	124	122	208	3.45e-29	109
Msa1407370	MtrunA17_Chr4g0021321	42.400	125	60	3	20	132	25	149	1.94e-28	108
Msa1407370	MtrunA17_Chr2g0324291	50.000	90	40	2	37	121	28	117	2.45e-28	105
Msa1407370	MtrunA17_Chr2g0324281	49.000	100	34	2	20	119	11	93	4.35e-28	105
Msa1407370	MtrunA17_Chr7g0258821	51.087	92	43	1	34	125	165	254	2.48e-27	108
Msa1407370	MtrunA17_Chr8g0360011	51.648	91	37	2	34	117	30	120	6.42e-27	104
Msa1407370	MtrunA17_Chr1g0175641	51.190	84	38	3	39	120	76	158	3.42e-26	100
Msa1407370	MtrunA17_Chr2g0324261	42.373	118	56	3	10	119	15	128	5.35e-26	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	AT2G23780.3	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT2G23780.2	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT2G23780.1	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT1G19310.1	57.212	208	80	5	21	222	5	209	3.34e-74	225
Msa1407370	AT1G74990.1	50.746	134	61	4	27	157	4	135	3.53e-41	138
Msa1407370	AT4G27470.1	45.283	106	44	3	34	128	37	139	3.12e-26	102
Msa1407370	AT4G03510.3	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.1	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.2	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.4	47.423	97	39	2	31	119	38	130	1.41e-25	100

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Find 74 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGACATTCTTGGGAA+TGG	0.467189	tig0023284:-56720	None:intergenic
AAACTCCCATTGTTATGAGG+TGG	0.636988	tig0023284:-56886	None:intergenic
AACAATGATCCTGGCGATGT+CGG	0.571877	tig0023284:+56589	Msa1407370:CDS
AACAGGACAAGTGCAACGGC+AGG	0.523959	tig0023284:+57128	Msa1407370:CDS
AACAGGACATTCTTGGGAAT+GGG	0.452683	tig0023284:-56719	None:intergenic
AACAGTTCCAACAATGATCC+TGG	0.522277	tig0023284:+56580	Msa1407370:CDS
AACTAAATCATATCCGGGGA+TGG	0.569407	tig0023284:+56813	Msa1407370:CDS
AAGAATTTGCTTATGCTGAT+TGG	0.345800	tig0023284:+57165	Msa1407370:CDS
AAGCAACAGGACAAGTGCAA+CGG	0.621601	tig0023284:+57124	Msa1407370:CDS
AAGTGTATATTCATAAGTGA+CGG	0.583974	tig0023284:-57003	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACAAACAGGACATTCTT+GGG	-	tig0023284:56728-56747	None:intergenic	30.0%
AGTGTATATTCATAAGTGAC+GGG	-	tig0023284:57005-57024	None:intergenic	30.0%
TTTGTTGGCCATGTCTTTAT+AGG	+	tig0023284:56680-56699	Msa1407370:CDS	35.0%
TGTAACCACCTATAAAGACA+TGG	-	tig0023284:56691-56710	None:intergenic	35.0%
CTTTACAAACAGGACATTCT+TGG	-	tig0023284:56729-56748	None:intergenic	35.0%
TGAACAAGTGCTTTACAAAC+AGG	-	tig0023284:56739-56758	None:intergenic	35.0%
ACTTGTTCAGGAAGAGAAAT+TGG	+	tig0023284:56750-56769	Msa1407370:CDS	35.0%
TCCGAGAACTAAATCATATC+CGG	+	tig0023284:56807-56826	Msa1407370:CDS	35.0%
GTAAAACTCCCATTGTTATG+AGG	-	tig0023284:56892-56911	None:intergenic	35.0%
TTTCAGGATGCTACTGTTTA+TGG	+	tig0023284:57033-57052	Msa1407370:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023284	gene	56502	57224	56502	ID=Msa1407370;Name=Msa1407370
tig0023284	mRNA	56502	57224	56502	ID=Msa1407370-mRNA-1;Parent=Msa1407370;Name=Msa1407370-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|240
tig0023284	exon	56502	57224	56502	ID=Msa1407370-mRNA-1:exon:25029;Parent=Msa1407370-mRNA-1
tig0023284	CDS	56502	57224	56502	ID=Msa1407370-mRNA-1:cds;Parent=Msa1407370-mRNA-1

Gene Sequence

>Msa1407370

ATGTCTCGACGTTTTGGAGAATCAGGAGAATCAACGAAATCAGCATCTGCACCACCAAACCCATCATGTTCATCAGGGAACAGTTCCAACAATGATCCTGGCGATGTCGGCGATTTTGAATGTAACATATGTTTTGATTTGGCACAGGATCCAGTGATCACACTTTGTGGTCATTTATTTTGTTGGCCATGTCTTTATAGGTGGTTACATCATCATTCCCATTCCCAAGAATGTCCTGTTTGTAAAGCACTTGTTCAGGAAGAGAAATTGGTGCCTCTTTATGGTAGAGGTAAAACGCAGACGGATCCGAGAACTAAATCATATCCGGGGATGGAGATTCCTCGCCGTCCTTCCGGACAGAGGCCGCAAACCGTGCCGAATCCACCACCTCATAACAATGGGAGTTTTACTGCTGGGATTGGATTGATGGGTGGATTTCTTCCGATGGCTACTGCTAGATTTGGAAACTTTTCGTTTTCGACGGGTTTTGGTGGGTTTATCCCGTCACTTATGAATATACACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACTTCTGGTTATCCATTTGGGTTCAACGGGTTTCAGGGTGGGAATGCGAGAGGTTTCAATTCGCAAGCAACAGGACAAGTGCAACGGCAGGAGGATAATTGTTTGAAGAATTTGCTTATGCTGATTGGATTTCTAGTCCTTCTTACGGTTATCTTTTTTATGTAA

Protein sequence

>Msa1407370

MSRRFGESGESTKSASAPPNPSCSSGNSSNNDPGDVGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPRRPSGQRPQTVPNPPPHNNGSFTAGIGLMGGFLPMATARFGNFSFSTGFGGFIPSLMNIHFHGFQDATVYGTTSGYPFGFNGFQGGNARGFNSQATGQVQRQEDNCLKNLLMLIGFLVLLTVIFFM*