AlfalfaGEDB | Msa1407370

M. sativa cultivar zhongmu-4 / Msa1407370

KEGG: K10666
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698
PFAM: PF13923.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	XP_003611911.1	91.358	243	14	3	1	240	1	239	6.13e-136	392

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	sp\|Q09463\|RNF5_CAEEL	33.878	245	129	7	15	238	2	234	1.05e-31	119

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	G7KAV6	91.358	243	14	3	1	240	1	239	2.93e-136	392

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024400	Msa1407370	0.810895	9.180900e-51	-8.615850e-47
Msa0110220	Msa1407370	0.806884	6.623274e-50	-8.615850e-47
Msa1407370	Msa1414820	0.804462	2.135675e-49	-8.615850e-47
Msa1407370	Msa1422480	0.831692	1.445501e-55	-8.615850e-47
Msa0626920	Msa1407370	0.810024	1.415419e-50	-8.615850e-47
Msa0716120	Msa1407370	0.822472	2.326582e-53	-8.615850e-47
Msa0740120	Msa1407370	0.817515	3.168863e-52	-8.615850e-47
Msa0747230	Msa1407370	0.804030	2.626854e-49	-8.615850e-47
Msa0750530	Msa1407370	0.828347	9.454447e-55	-8.615850e-47
Msa0776560	Msa1407370	0.822249	2.620570e-53	-8.615850e-47
Msa0791390	Msa1407370	0.805201	1.496525e-49	-8.615850e-47
Msa0828590	Msa1407370	0.824347	8.477831e-54	-8.615850e-47
Msa0163510	Msa1407370	0.812830	3.480627e-51	-8.615850e-47
Msa0186540	Msa1407370	0.831522	1.591224e-55	-8.615850e-47
Msa0231800	Msa1407370	0.813240	2.829074e-51	-8.615850e-47
Msa0237320	Msa1407370	0.804680	1.923465e-49	-8.615850e-47
Msa1260220	Msa1407370	0.800128	1.666592e-48	-8.615850e-47
Msa1339020	Msa1407370	0.806608	7.574278e-50	-8.615850e-47
Msa0374210	Msa1407370	0.809997	1.434734e-50	-8.615850e-47
Msa0377820	Msa1407370	0.804515	2.082122e-49	-8.615850e-47
Msa0385740	Msa1407370	0.813516	2.460486e-51	-8.615850e-47
Msa0472930	Msa1407370	0.804953	1.686523e-49	-8.615850e-47
Msa0998620	Msa1407370	0.827563	1.460292e-54	-8.615850e-47
Msa1026970	Msa1407370	0.810248	1.266955e-50	-8.615850e-47
Msa0256140	Msa1407370	0.820323	7.287132e-53	-8.615850e-47
Msa0259680	Msa1407370	0.819633	1.048221e-52	-8.615850e-47
Msa0274740	Msa1407370	0.809309	2.016271e-50	-8.615850e-47
Msa0341480	Msa1407370	0.808803	2.588027e-50	-8.615850e-47
Msa1111900	Msa1407370	0.824616	7.330835e-54	-8.615850e-47
Msa1133760	Msa1407370	0.841228	5.397107e-58	-8.615850e-47
Msa1218620	Msa1407370	0.800125	1.668559e-48	-8.615850e-47
Msa0525770	Msa1407370	0.818807	1.616522e-52	-8.615850e-47
Msa0578410	Msa1407370	0.800643	1.308955e-48	-8.615850e-47
Msa0860820	Msa1407370	0.843063	1.764186e-58	-8.615850e-47
Msa0898770	Msa1407370	0.826823	2.195137e-54	-8.615850e-47
Msa0928110	Msa1407370	0.839184	1.844540e-57	-8.615850e-47
Msa0928180	Msa1407370	0.806956	6.394036e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	MtrunA17_Chr5g0403521	91.358	243	14	3	1	240	1	239	5.64e-140	392
Msa1407370	MtrunA17_Chr1g0154561	58.294	211	76	6	35	238	28	233	1.55e-69	213
Msa1407370	MtrunA17_Chr1g0175571	51.724	87	41	1	39	124	122	208	3.45e-29	109
Msa1407370	MtrunA17_Chr4g0021321	42.400	125	60	3	20	132	25	149	1.94e-28	108
Msa1407370	MtrunA17_Chr2g0324291	50.000	90	40	2	37	121	28	117	2.45e-28	105
Msa1407370	MtrunA17_Chr2g0324281	49.000	100	34	2	20	119	11	93	4.35e-28	105
Msa1407370	MtrunA17_Chr7g0258821	51.087	92	43	1	34	125	165	254	2.48e-27	108
Msa1407370	MtrunA17_Chr8g0360011	51.648	91	37	2	34	117	30	120	6.42e-27	104
Msa1407370	MtrunA17_Chr1g0175641	51.190	84	38	3	39	120	76	158	3.42e-26	100
Msa1407370	MtrunA17_Chr2g0324261	42.373	118	56	3	10	119	15	128	5.35e-26	101
Msa1407370	MtrunA17_Chr1g0175871	39.850	133	62	4	5	119	13	145	3.39e-25	98.2
Msa1407370	MtrunA17_Chr4g0047381	45.918	98	42	3	39	125	31	128	1.74e-22	92.0
Msa1407370	MtrunA17_Chr4g0047371	40.351	114	56	3	24	125	15	128	2.15e-22	90.9
Msa1407370	MtrunA17_Chr2g0282171	45.833	96	42	3	39	125	27	121	3.63e-22	91.3
Msa1407370	MtrunA17_Chr2g0308681	39.773	88	52	1	39	125	107	194	4.57e-20	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407370	AT2G23780.3	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT2G23780.2	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT2G23780.1	62.673	217	71	6	27	238	16	227	6.89e-89	262
Msa1407370	AT1G19310.1	57.212	208	80	5	21	222	5	209	3.34e-74	225
Msa1407370	AT1G74990.1	50.746	134	61	4	27	157	4	135	3.53e-41	138
Msa1407370	AT4G27470.1	45.283	106	44	3	34	128	37	139	3.12e-26	102
Msa1407370	AT4G03510.3	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.1	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.2	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G03510.4	47.423	97	39	2	31	119	38	130	1.41e-25	100
Msa1407370	AT4G28270.1	47.917	96	31	4	37	119	17	106	2.37e-24	96.3
Msa1407370	AT3G58030.4	44.944	89	46	2	39	127	137	222	1.60e-23	98.6
Msa1407370	AT3G58030.2	44.944	89	46	2	39	127	137	222	1.60e-23	98.6
Msa1407370	AT3G58030.1	44.944	89	46	2	39	127	137	222	1.60e-23	98.6
Msa1407370	AT3G58030.3	44.944	89	46	2	39	127	137	222	1.60e-23	98.6
Msa1407370	AT2G42030.1	44.828	87	45	2	39	125	139	222	3.51e-23	97.4
Msa1407370	AT2G44410.1	40.659	91	51	2	37	125	121	210	8.84e-19	84.7

Find 74 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCAGGATGCTACTGTTTA+TGG	0.167323	tig0023284:+57033	Msa1407370:CDS
GAGAAATTGGTGCCTCTTTA+TGG	0.188488	tig0023284:+56763	Msa1407370:CDS
ATTTGGGTTCAACGGGTTTC+AGG	0.247980	tig0023284:+57074	Msa1407370:CDS
TTTGTTGGCCATGTCTTTAT+AGG	0.254637	tig0023284:+56680	Msa1407370:CDS
ACAACTTCTGGTTATCCATT+TGG	0.261632	tig0023284:+57057	Msa1407370:CDS
ACTGTTTATGGGACAACTTC+TGG	0.273010	tig0023284:+57045	Msa1407370:CDS
CAACTTCTGGTTATCCATTT+GGG	0.287027	tig0023284:+57058	Msa1407370:CDS
ACTTGTTCAGGAAGAGAAAT+TGG	0.291213	tig0023284:+56750	Msa1407370:CDS
CTTATGAATATACACTTTCA+TGG	0.293268	tig0023284:+57009	Msa1407370:CDS
TACTGCTGGGATTGGATTGA+TGG	0.307850	tig0023284:+56909	Msa1407370:CDS
AGAGAAATGTCTCGACGTTT+TGG	0.313707	tig0023284:+56496	None:intergenic
CTTTACAAACAGGACATTCT+TGG	0.336132	tig0023284:-56726	None:intergenic
CCCGGATATGATTTAGTTCT+CGG	0.339322	tig0023284:-56808	None:intergenic
AAGAATTTGCTTATGCTGAT+TGG	0.345800	tig0023284:+57165	Msa1407370:CDS
GAGATTCCTCGCCGTCCTTC+CGG	0.353413	tig0023284:+56835	Msa1407370:CDS
CCGATGGCTACTGCTAGATT+TGG	0.354815	tig0023284:+56943	Msa1407370:CDS
TTCAGGATGCTACTGTTTAT+GGG	0.361416	tig0023284:+57034	Msa1407370:CDS
CACGGTTTGCGGCCTCTGTC+CGG	0.379672	tig0023284:-56854	None:intergenic
TTGTTATGAGGTGGTGGATT+CGG	0.380136	tig0023284:-56877	None:intergenic
TCAAAATCGCCGACATCGCC+AGG	0.399241	tig0023284:-56598	None:intergenic
CCAAACCCATCATGTTCATC+AGG	0.401623	tig0023284:+56556	Msa1407370:CDS
GGTTTCAATTCGCAAGCAAC+AGG	0.415216	tig0023284:+57111	Msa1407370:CDS
TTTACAAACAGGACATTCTT+GGG	0.417710	tig0023284:-56725	None:intergenic
TTTGGGTTCAACGGGTTTCA+GGG	0.418547	tig0023284:+57075	Msa1407370:CDS
TGAACAAGTGCTTTACAAAC+AGG	0.427996	tig0023284:-56736	None:intergenic
CCTGATGAACATGATGGGTT+TGG	0.431554	tig0023284:-56556	None:intergenic
TCCGAGAACTAAATCATATC+CGG	0.436022	tig0023284:+56807	Msa1407370:CDS
TGTTTGTAAAGCACTTGTTC+AGG	0.444996	tig0023284:+56738	Msa1407370:CDS
GGTGGATTCGGCACGGTTTG+CGG	0.446057	tig0023284:-56865	None:intergenic
AACAGGACATTCTTGGGAAT+GGG	0.452683	tig0023284:-56719	None:intergenic
GTTATCCATTTGGGTTCAAC+GGG	0.454746	tig0023284:+57067	Msa1407370:CDS
TGAAACCCGTTGAACCCAAA+TGG	0.458530	tig0023284:-57072	None:intergenic
ACTGCTGGGATTGGATTGAT+GGG	0.466877	tig0023284:+56910	Msa1407370:CDS
AAACAGGACATTCTTGGGAA+TGG	0.467189	tig0023284:-56720	None:intergenic
GGTTCAACGGGTTTCAGGGT+GGG	0.474844	tig0023284:+57079	Msa1407370:CDS
GGTTATCCATTTGGGTTCAA+CGG	0.476182	tig0023284:+57066	Msa1407370:CDS
TGGATTTCTAGTCCTTCTTA+CGG	0.485784	tig0023284:+57185	Msa1407370:CDS
CTCCCATTGTTATGAGGTGG+TGG	0.489584	tig0023284:-56883	None:intergenic
GATGAACATGATGGGTTTGG+TGG	0.500767	tig0023284:-56553	None:intergenic
ATCCACCACCTCATAACAAT+GGG	0.503935	tig0023284:+56881	Msa1407370:CDS
GTTGGCCATGTCTTTATAGG+TGG	0.509894	tig0023284:+56683	Msa1407370:CDS
AACAGTTCCAACAATGATCC+TGG	0.522277	tig0023284:+56580	Msa1407370:CDS
TTGGTGCCTCTTTATGGTAG+AGG	0.523573	tig0023284:+56769	Msa1407370:CDS
AACAGGACAAGTGCAACGGC+AGG	0.523959	tig0023284:+57128	Msa1407370:CDS
GTAAAACTCCCATTGTTATG+AGG	0.528292	tig0023284:-56889	None:intergenic
GCGGCCTCTGTCCGGAAGGA+CGG	0.532356	tig0023284:-56846	None:intergenic
CCGAGAACTAAATCATATCC+GGG	0.533561	tig0023284:+56808	Msa1407370:CDS
GACATCGCCAGGATCATTGT+TGG	0.534796	tig0023284:-56587	None:intergenic
GATCCAGTGATCACACTTTG+TGG	0.540983	tig0023284:+56649	Msa1407370:CDS
GCTGGGATTGGATTGATGGG+TGG	0.551373	tig0023284:+56913	Msa1407370:CDS
GATGGGTGGATTTCTTCCGA+TGG	0.553310	tig0023284:+56927	Msa1407370:CDS
AGTGTATATTCATAAGTGAC+GGG	0.559818	tig0023284:-57002	None:intergenic
TGACCACAAAGTGTGATCAC+TGG	0.563476	tig0023284:-56652	None:intergenic
AACTAAATCATATCCGGGGA+TGG	0.569407	tig0023284:+56813	Msa1407370:CDS
AACAATGATCCTGGCGATGT+CGG	0.571877	tig0023284:+56589	Msa1407370:CDS
TTTCAGGGTGGGAATGCGAG+AGG	0.574157	tig0023284:+57090	Msa1407370:CDS
GTTTGCGGCCTCTGTCCGGA+AGG	0.581142	tig0023284:-56850	None:intergenic
CTGTTCCCTGATGAACATGA+TGG	0.583916	tig0023284:-56562	None:intergenic
AAGTGTATATTCATAAGTGA+CGG	0.583974	tig0023284:-57003	None:intergenic
GGGTTCAACGGGTTTCAGGG+TGG	0.588862	tig0023284:+57078	Msa1407370:CDS
CGGCGAGGAATCTCCATCCC+CGG	0.591217	tig0023284:-56826	None:intergenic
CTCGCCGTCCTTCCGGACAG+AGG	0.603395	tig0023284:+56842	Msa1407370:CDS
AATCCACCACCTCATAACAA+TGG	0.610003	tig0023284:+56880	Msa1407370:CDS
ATGAGGTGGTGGATTCGGCA+CGG	0.610340	tig0023284:-56872	None:intergenic
AAGCAACAGGACAAGTGCAA+CGG	0.621601	tig0023284:+57124	Msa1407370:CDS
CTCTGTCCGGAAGGACGGCG+AGG	0.628222	tig0023284:-56841	None:intergenic
AGGACAAGTGCAACGGCAGG+AGG	0.631148	tig0023284:+57131	Msa1407370:CDS
AAACTCCCATTGTTATGAGG+TGG	0.636988	tig0023284:-56886	None:intergenic
CAAACCCATCATGTTCATCA+GGG	0.650075	tig0023284:+56557	Msa1407370:CDS
CCAAATCTAGCAGTAGCCAT+CGG	0.653472	tig0023284:-56943	None:intergenic
TGGTAGAGGTAAAACGCAGA+CGG	0.654255	tig0023284:+56783	Msa1407370:CDS
TGTTCCCTGATGAACATGAT+GGG	0.680660	tig0023284:-56561	None:intergenic
CGAGAACTAAATCATATCCG+GGG	0.686552	tig0023284:+56809	Msa1407370:CDS
TGTAACCACCTATAAAGACA+TGG	0.687496	tig0023284:-56688	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATGTAACATATGTTTTGATT+TGG	+	tig0023284:56621-56640	Msa1407370:CDS	20.0%
!!!	TTTGTGGTCATTTATTTTGT+TGG	+	tig0023284:56665-56684	Msa1407370:CDS	25.0%
!	AAGTGTATATTCATAAGTGA+CGG	-	tig0023284:57006-57025	None:intergenic	25.0%
!	CTTATGAATATACACTTTCA+TGG	+	tig0023284:57009-57028	Msa1407370:CDS	25.0%
!	TAAAAAAGATAACCGTAAGA+AGG	-	tig0023284:57200-57219	None:intergenic	25.0%
	TTTACAAACAGGACATTCTT+GGG	-	tig0023284:56728-56747	None:intergenic	30.0%
	AGTGTATATTCATAAGTGAC+GGG	-	tig0023284:57005-57024	None:intergenic	30.0%
!	TATACACTTTCATGGTTTTC+AGG	+	tig0023284:57017-57036	Msa1407370:CDS	30.0%
!	AAGAATTTGCTTATGCTGAT+TGG	+	tig0023284:57165-57184	Msa1407370:CDS	30.0%
!!!	CATATGTTTTGATTTGGCAC+AGG	+	tig0023284:56627-56646	Msa1407370:CDS	35.0%
	TTTGTTGGCCATGTCTTTAT+AGG	+	tig0023284:56680-56699	Msa1407370:CDS	35.0%
	TGTAACCACCTATAAAGACA+TGG	-	tig0023284:56691-56710	None:intergenic	35.0%
	CTTTACAAACAGGACATTCT+TGG	-	tig0023284:56729-56748	None:intergenic	35.0%
	TGAACAAGTGCTTTACAAAC+AGG	-	tig0023284:56739-56758	None:intergenic	35.0%
!	TGTTTGTAAAGCACTTGTTC+AGG	+	tig0023284:56738-56757	Msa1407370:CDS	35.0%
	ACTTGTTCAGGAAGAGAAAT+TGG	+	tig0023284:56750-56769	Msa1407370:CDS	35.0%
!	GTTTTACCTCTACCATAAAG+AGG	-	tig0023284:56778-56797	None:intergenic	35.0%
	TCCGAGAACTAAATCATATC+CGG	+	tig0023284:56807-56826	Msa1407370:CDS	35.0%
	GTAAAACTCCCATTGTTATG+AGG	-	tig0023284:56892-56911	None:intergenic	35.0%
!	TGGAAACTTTTCGTTTTCGA+CGG	+	tig0023284:56963-56982	Msa1407370:CDS	35.0%
	TTTCAGGATGCTACTGTTTA+TGG	+	tig0023284:57033-57052	Msa1407370:CDS	35.0%
	TTCAGGATGCTACTGTTTAT+GGG	+	tig0023284:57034-57053	Msa1407370:CDS	35.0%
!	ACAACTTCTGGTTATCCATT+TGG	+	tig0023284:57057-57076	Msa1407370:CDS	35.0%
!	CAACTTCTGGTTATCCATTT+GGG	+	tig0023284:57058-57077	Msa1407370:CDS	35.0%
!!	TGGATTTCTAGTCCTTCTTA+CGG	+	tig0023284:57185-57204	Msa1407370:CDS	35.0%
	CAAACCCATCATGTTCATCA+GGG	+	tig0023284:56557-56576	Msa1407370:CDS	40.0%
	TGTTCCCTGATGAACATGAT+GGG	-	tig0023284:56564-56583	None:intergenic	40.0%
	AACAGTTCCAACAATGATCC+TGG	+	tig0023284:56580-56599	Msa1407370:CDS	40.0%
	AACAGGACATTCTTGGGAAT+GGG	-	tig0023284:56722-56741	None:intergenic	40.0%
	AAACAGGACATTCTTGGGAA+TGG	-	tig0023284:56723-56742	None:intergenic	40.0%
!	GAGAAATTGGTGCCTCTTTA+TGG	+	tig0023284:56763-56782	Msa1407370:CDS	40.0%
!!	CCCGGATATGATTTAGTTCT+CGG	-	tig0023284:56811-56830	None:intergenic	40.0%
	CCGAGAACTAAATCATATCC+GGG	+	tig0023284:56808-56827	Msa1407370:CDS	40.0%
	CGAGAACTAAATCATATCCG+GGG	+	tig0023284:56809-56828	Msa1407370:CDS	40.0%
	AACTAAATCATATCCGGGGA+TGG	+	tig0023284:56813-56832	Msa1407370:CDS	40.0%
!!	TTGTTATGAGGTGGTGGATT+CGG	-	tig0023284:56880-56899	None:intergenic	40.0%
	AATCCACCACCTCATAACAA+TGG	+	tig0023284:56880-56899	Msa1407370:CDS	40.0%
	ATCCACCACCTCATAACAAT+GGG	+	tig0023284:56881-56900	Msa1407370:CDS	40.0%
	AAACTCCCATTGTTATGAGG+TGG	-	tig0023284:56889-56908	None:intergenic	40.0%
!	AACAATGGGAGTTTTACTGC+TGG	+	tig0023284:56895-56914	Msa1407370:CDS	40.0%
!	ACAATGGGAGTTTTACTGCT+GGG	+	tig0023284:56896-56915	Msa1407370:CDS	40.0%
!	GGAAACTTTTCGTTTTCGAC+GGG	+	tig0023284:56964-56983	Msa1407370:CDS	40.0%
!!	TTTTCGTTTTCGACGGGTTT+TGG	+	tig0023284:56970-56989	Msa1407370:CDS	40.0%
	ACTGTTTATGGGACAACTTC+TGG	+	tig0023284:57045-57064	Msa1407370:CDS	40.0%
!	GGTTATCCATTTGGGTTCAA+CGG	+	tig0023284:57066-57085	Msa1407370:CDS	40.0%
!	GTTATCCATTTGGGTTCAAC+GGG	+	tig0023284:57067-57086	Msa1407370:CDS	40.0%
!!!	TCTCGACGTTTTGGAGAATC+AGG	+	tig0023284:56505-56524	Msa1407370:CDS	45.0%
!!	GATGAACATGATGGGTTTGG+TGG	-	tig0023284:56556-56575	None:intergenic	45.0%
!!	CCTGATGAACATGATGGGTT+TGG	-	tig0023284:56559-56578	None:intergenic	45.0%
	CCAAACCCATCATGTTCATC+AGG	+	tig0023284:56556-56575	Msa1407370:CDS	45.0%
	CTGTTCCCTGATGAACATGA+TGG	-	tig0023284:56565-56584	None:intergenic	45.0%
	AACAATGATCCTGGCGATGT+CGG	+	tig0023284:56589-56608	Msa1407370:CDS	45.0%
	GATCCAGTGATCACACTTTG+TGG	+	tig0023284:56649-56668	Msa1407370:CDS	45.0%
	TGACCACAAAGTGTGATCAC+TGG	-	tig0023284:56655-56674	None:intergenic	45.0%
	GTTGGCCATGTCTTTATAGG+TGG	+	tig0023284:56683-56702	Msa1407370:CDS	45.0%
!	TTGGTGCCTCTTTATGGTAG+AGG	+	tig0023284:56769-56788	Msa1407370:CDS	45.0%
	TGGTAGAGGTAAAACGCAGA+CGG	+	tig0023284:56783-56802	Msa1407370:CDS	45.0%
	TACTGCTGGGATTGGATTGA+TGG	+	tig0023284:56909-56928	Msa1407370:CDS	45.0%
	ACTGCTGGGATTGGATTGAT+GGG	+	tig0023284:56910-56929	Msa1407370:CDS	45.0%
	CCAAATCTAGCAGTAGCCAT+CGG	-	tig0023284:56946-56965	None:intergenic	45.0%
	TGAAACCCGTTGAACCCAAA+TGG	-	tig0023284:57075-57094	None:intergenic	45.0%
!	ATTTGGGTTCAACGGGTTTC+AGG	+	tig0023284:57074-57093	Msa1407370:CDS	45.0%
!	TTTGGGTTCAACGGGTTTCA+GGG	+	tig0023284:57075-57094	Msa1407370:CDS	45.0%
	GGTTTCAATTCGCAAGCAAC+AGG	+	tig0023284:57111-57130	Msa1407370:CDS	45.0%
	AAGCAACAGGACAAGTGCAA+CGG	+	tig0023284:57124-57143	Msa1407370:CDS	45.0%
	GACATCGCCAGGATCATTGT+TGG	-	tig0023284:56590-56609	None:intergenic	50.0%
	CTCCCATTGTTATGAGGTGG+TGG	-	tig0023284:56886-56905	None:intergenic	50.0%
!	GGGAGTTTTACTGCTGGGAT+TGG	+	tig0023284:56901-56920	Msa1407370:CDS	50.0%
!	GATGGGTGGATTTCTTCCGA+TGG	+	tig0023284:56927-56946	Msa1407370:CDS	50.0%
	CCGATGGCTACTGCTAGATT+TGG	+	tig0023284:56943-56962	Msa1407370:CDS	50.0%
!!	TCGTTTTCGACGGGTTTTGG+TGG	+	tig0023284:56973-56992	Msa1407370:CDS	50.0%
!!	CGTTTTCGACGGGTTTTGGT+GGG	+	tig0023284:56974-56993	Msa1407370:CDS	50.0%
	TCAAAATCGCCGACATCGCC+AGG	-	tig0023284:56601-56620	None:intergenic	55.0%
!!	ATGAGGTGGTGGATTCGGCA+CGG	-	tig0023284:56875-56894	None:intergenic	55.0%
	GCTGGGATTGGATTGATGGG+TGG	+	tig0023284:56913-56932	Msa1407370:CDS	55.0%
!	GGTTCAACGGGTTTCAGGGT+GGG	+	tig0023284:57079-57098	Msa1407370:CDS	55.0%
	TTTCAGGGTGGGAATGCGAG+AGG	+	tig0023284:57090-57109	Msa1407370:CDS	55.0%
	AACAGGACAAGTGCAACGGC+AGG	+	tig0023284:57128-57147	Msa1407370:CDS	55.0%
	GAGATTCCTCGCCGTCCTTC+CGG	+	tig0023284:56835-56854	Msa1407370:CDS	60.0%
!	GGTGGATTCGGCACGGTTTG+CGG	-	tig0023284:56868-56887	None:intergenic	60.0%
!	GGGTTCAACGGGTTTCAGGG+TGG	+	tig0023284:57078-57097	Msa1407370:CDS	60.0%
	AGGACAAGTGCAACGGCAGG+AGG	+	tig0023284:57131-57150	Msa1407370:CDS	60.0%
	CGGCGAGGAATCTCCATCCC+CGG	-	tig0023284:56829-56848	None:intergenic	65.0%
	GTTTGCGGCCTCTGTCCGGA+AGG	-	tig0023284:56853-56872	None:intergenic	65.0%
	CACGGTTTGCGGCCTCTGTC+CGG	-	tig0023284:56857-56876	None:intergenic	65.0%
	CTCTGTCCGGAAGGACGGCG+AGG	-	tig0023284:56844-56863	None:intergenic	70.0%
	CTCGCCGTCCTTCCGGACAG+AGG	+	tig0023284:56842-56861	Msa1407370:CDS	70.0%
	GCGGCCTCTGTCCGGAAGGA+CGG	-	tig0023284:56849-56868	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
tig0023284	gene	56502	57224	56502	ID=Msa1407370;Name=Msa1407370
tig0023284	mRNA	56502	57224	56502	ID=Msa1407370-mRNA-1;Parent=Msa1407370;Name=Msa1407370-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|240
tig0023284	exon	56502	57224	56502	ID=Msa1407370-mRNA-1:exon:25029;Parent=Msa1407370-mRNA-1
tig0023284	CDS	56502	57224	56502	ID=Msa1407370-mRNA-1:cds;Parent=Msa1407370-mRNA-1

Gene Sequence

>Msa1407370

ATGTCTCGACGTTTTGGAGAATCAGGAGAATCAACGAAATCAGCATCTGCACCACCAAACCCATCATGTTCATCAGGGAACAGTTCCAACAATGATCCTGGCGATGTCGGCGATTTTGAATGTAACATATGTTTTGATTTGGCACAGGATCCAGTGATCACACTTTGTGGTCATTTATTTTGTTGGCCATGTCTTTATAGGTGGTTACATCATCATTCCCATTCCCAAGAATGTCCTGTTTGTAAAGCACTTGTTCAGGAAGAGAAATTGGTGCCTCTTTATGGTAGAGGTAAAACGCAGACGGATCCGAGAACTAAATCATATCCGGGGATGGAGATTCCTCGCCGTCCTTCCGGACAGAGGCCGCAAACCGTGCCGAATCCACCACCTCATAACAATGGGAGTTTTACTGCTGGGATTGGATTGATGGGTGGATTTCTTCCGATGGCTACTGCTAGATTTGGAAACTTTTCGTTTTCGACGGGTTTTGGTGGGTTTATCCCGTCACTTATGAATATACACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACTTCTGGTTATCCATTTGGGTTCAACGGGTTTCAGGGTGGGAATGCGAGAGGTTTCAATTCGCAAGCAACAGGACAAGTGCAACGGCAGGAGGATAATTGTTTGAAGAATTTGCTTATGCTGATTGGATTTCTAGTCCTTCTTACGGTTATCTTTTTTATGTAA

Protein sequence

>Msa1407370

MSRRFGESGESTKSASAPPNPSCSSGNSSNNDPGDVGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPRRPSGQRPQTVPNPPPHNNGSFTAGIGLMGGFLPMATARFGNFSFSTGFGGFIPSLMNIHFHGFQDATVYGTTSGYPFGFNGFQGGNARGFNSQATGQVQRQEDNCLKNLLMLIGFLVLLTVIFFM*