Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716280 | XP_003611946.1 | 91.403 | 221 | 12 | 1 | 1 | 214 | 1 | 221 | 1.78e-136 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716280 | sp|O23208|ATB40_ARATH | 55.238 | 210 | 89 | 4 | 7 | 214 | 10 | 216 | 1.92e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716280 | G7KC72 | 91.403 | 221 | 12 | 1 | 1 | 214 | 1 | 221 | 8.52e-137 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0716280 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0716280 | Msa0757590 | 0.823048 | 1.708309e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716280 | MtrunA17_Chr5g0403691 | 91.403 | 221 | 12 | 1 | 1 | 214 | 1 | 221 | 1.64e-140 | 391 |
| Msa0716280 | MtrunA17_Chr5g0403701 | 83.491 | 212 | 30 | 1 | 1 | 212 | 1 | 207 | 5.97e-122 | 344 |
| Msa0716280 | MtrunA17_Chr6g0450991 | 49.550 | 111 | 47 | 2 | 53 | 156 | 67 | 175 | 4.16e-24 | 96.7 |
| Msa0716280 | MtrunA17_Chr4g0060031 | 41.727 | 139 | 63 | 3 | 34 | 154 | 65 | 203 | 8.58e-24 | 96.7 |
| Msa0716280 | MtrunA17_Chr3g0123691 | 51.485 | 101 | 42 | 1 | 53 | 153 | 60 | 153 | 6.87e-23 | 94.0 |
| Msa0716280 | MtrunA17_Chr8g0381741 | 62.162 | 74 | 28 | 0 | 53 | 126 | 54 | 127 | 4.62e-22 | 91.7 |
| Msa0716280 | MtrunA17_Chr7g0265521 | 36.145 | 166 | 88 | 3 | 53 | 204 | 63 | 224 | 8.43e-22 | 89.4 |
| Msa0716280 | MtrunA17_Chr8g0362751 | 61.429 | 70 | 27 | 0 | 53 | 122 | 89 | 158 | 4.48e-21 | 88.6 |
| Msa0716280 | MtrunA17_Chr5g0416391 | 48.246 | 114 | 48 | 3 | 48 | 159 | 74 | 178 | 4.80e-21 | 88.6 |
| Msa0716280 | MtrunA17_Chr5g0415941 | 63.380 | 71 | 26 | 0 | 53 | 123 | 87 | 157 | 5.04e-21 | 89.0 |
| Msa0716280 | MtrunA17_Chr6g0453021 | 52.525 | 99 | 45 | 1 | 44 | 142 | 89 | 185 | 6.03e-21 | 88.2 |
| Msa0716280 | MtrunA17_Chr3g0127511 | 40.426 | 141 | 67 | 3 | 55 | 195 | 40 | 163 | 1.04e-20 | 87.0 |
| Msa0716280 | MtrunA17_Chr8g0362151 | 45.794 | 107 | 53 | 1 | 53 | 159 | 77 | 178 | 1.45e-20 | 87.0 |
| Msa0716280 | MtrunA17_Chr3g0119291 | 39.456 | 147 | 76 | 2 | 45 | 178 | 51 | 197 | 6.38e-19 | 82.4 |
| Msa0716280 | MtrunA17_Chr1g0179581 | 47.126 | 87 | 46 | 0 | 49 | 135 | 24 | 110 | 8.12e-19 | 78.6 |
| Msa0716280 | MtrunA17_Chr8g0346251 | 44.860 | 107 | 56 | 1 | 57 | 163 | 45 | 148 | 1.88e-17 | 78.2 |
| Msa0716280 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 53 | 142 | 80 | 169 | 1.35e-15 | 73.6 |
| Msa0716280 | MtrunA17_Chr4g0055851 | 40.000 | 110 | 61 | 1 | 38 | 142 | 105 | 214 | 1.46e-13 | 67.8 |
| Msa0716280 | MtrunA17_Chr4g0044091 | 52.239 | 67 | 32 | 0 | 53 | 119 | 65 | 131 | 2.02e-13 | 66.2 |
| Msa0716280 | MtrunA17_Chr2g0308611 | 37.302 | 126 | 73 | 2 | 53 | 172 | 200 | 325 | 9.95e-13 | 65.9 |
| Msa0716280 | MtrunA17_Chr4g0054421 | 39.823 | 113 | 63 | 1 | 35 | 142 | 109 | 221 | 1.05e-12 | 65.5 |
| Msa0716280 | MtrunA17_Chr8g0335131 | 43.158 | 95 | 49 | 1 | 53 | 142 | 146 | 240 | 2.24e-12 | 64.7 |
| Msa0716280 | MtrunA17_Chr7g0258831 | 36.134 | 119 | 71 | 1 | 27 | 140 | 134 | 252 | 4.85e-12 | 63.9 |
| Msa0716280 | MtrunA17_Chr5g0400781 | 43.000 | 100 | 52 | 1 | 48 | 142 | 118 | 217 | 1.37e-11 | 62.4 |
| Msa0716280 | MtrunA17_Chr2g0299031 | 36.441 | 118 | 60 | 2 | 53 | 170 | 82 | 184 | 4.44e-11 | 60.1 |
| Msa0716280 | MtrunA17_Chr1g0151971 | 47.887 | 71 | 37 | 0 | 53 | 123 | 130 | 200 | 5.81e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716280 | AT4G36740.2 | 55.924 | 211 | 87 | 5 | 7 | 214 | 10 | 217 | 5.89e-69 | 210 |
| Msa0716280 | AT4G36740.1 | 55.238 | 210 | 89 | 4 | 7 | 214 | 10 | 216 | 1.96e-68 | 209 |
| Msa0716280 | AT2G18550.1 | 48.444 | 225 | 100 | 7 | 1 | 214 | 1 | 220 | 2.95e-64 | 198 |
| Msa0716280 | AT5G66700.1 | 48.000 | 225 | 97 | 6 | 5 | 214 | 9 | 228 | 2.35e-51 | 166 |
| Msa0716280 | AT3G01470.1 | 46.957 | 115 | 51 | 2 | 53 | 160 | 68 | 179 | 1.68e-24 | 97.8 |
| Msa0716280 | AT1G69780.1 | 54.444 | 90 | 41 | 0 | 53 | 142 | 85 | 174 | 6.35e-23 | 94.0 |
| Msa0716280 | AT4G40060.1 | 59.259 | 81 | 33 | 0 | 43 | 123 | 49 | 129 | 1.16e-22 | 93.6 |
| Msa0716280 | AT2G22430.1 | 63.158 | 76 | 28 | 0 | 48 | 123 | 57 | 132 | 2.11e-22 | 92.8 |
| Msa0716280 | AT5G65310.2 | 57.500 | 80 | 34 | 0 | 44 | 123 | 45 | 124 | 6.47e-22 | 91.3 |
| Msa0716280 | AT5G65310.1 | 57.500 | 80 | 34 | 0 | 44 | 123 | 63 | 142 | 7.61e-22 | 91.7 |
| Msa0716280 | AT5G03790.1 | 40.800 | 125 | 74 | 0 | 14 | 138 | 38 | 162 | 1.04e-21 | 89.7 |
| Msa0716280 | AT5G03790.2 | 41.667 | 120 | 70 | 0 | 19 | 138 | 43 | 162 | 1.90e-21 | 87.8 |
| Msa0716280 | AT2G46680.1 | 41.803 | 122 | 64 | 1 | 52 | 173 | 31 | 145 | 8.44e-21 | 87.8 |
| Msa0716280 | AT2G46680.2 | 49.057 | 106 | 47 | 1 | 52 | 150 | 31 | 136 | 3.01e-20 | 86.3 |
| Msa0716280 | AT1G26960.1 | 42.742 | 124 | 66 | 1 | 53 | 176 | 71 | 189 | 1.34e-19 | 84.3 |
| Msa0716280 | AT2G36610.1 | 45.192 | 104 | 49 | 2 | 49 | 144 | 67 | 170 | 3.70e-19 | 81.6 |
| Msa0716280 | AT5G15150.1 | 58.571 | 70 | 29 | 0 | 53 | 122 | 115 | 184 | 4.15e-18 | 81.3 |
| Msa0716280 | AT3G61890.1 | 43.434 | 99 | 56 | 0 | 56 | 154 | 33 | 131 | 6.21e-18 | 79.7 |
| Msa0716280 | AT5G53980.1 | 35.252 | 139 | 90 | 0 | 52 | 190 | 10 | 148 | 9.03e-18 | 77.4 |
| Msa0716280 | AT3G01220.1 | 53.247 | 77 | 34 | 1 | 43 | 119 | 79 | 153 | 1.45e-17 | 79.3 |
| Msa0716280 | AT1G27045.1 | 41.221 | 131 | 64 | 2 | 50 | 167 | 65 | 195 | 2.55e-17 | 77.8 |
| Msa0716280 | AT1G27045.2 | 41.221 | 131 | 64 | 2 | 50 | 167 | 14 | 144 | 2.64e-17 | 76.6 |
| Msa0716280 | AT1G27045.5 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 2.90e-17 | 76.6 |
| Msa0716280 | AT1G27045.3 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 2.90e-17 | 76.6 |
| Msa0716280 | AT1G27045.4 | 46.237 | 93 | 43 | 1 | 50 | 135 | 65 | 157 | 7.09e-16 | 74.3 |
| Msa0716280 | AT1G70920.2 | 35.811 | 148 | 71 | 3 | 41 | 188 | 27 | 150 | 8.60e-12 | 62.0 |
| Msa0716280 | AT4G16780.1 | 40.385 | 104 | 53 | 2 | 44 | 142 | 124 | 223 | 1.10e-11 | 63.2 |
| Msa0716280 | AT1G70920.1 | 46.835 | 79 | 42 | 0 | 41 | 119 | 57 | 135 | 1.38e-11 | 62.0 |
| Msa0716280 | AT2G22800.1 | 44.086 | 93 | 47 | 2 | 53 | 140 | 113 | 205 | 1.85e-11 | 62.4 |
| Msa0716280 | AT2G01430.1 | 34.127 | 126 | 68 | 2 | 45 | 170 | 131 | 241 | 3.04e-11 | 61.6 |
| Msa0716280 | AT4G37790.1 | 43.011 | 93 | 48 | 1 | 53 | 140 | 126 | 218 | 3.92e-11 | 61.6 |
| Msa0716280 | AT5G06710.1 | 39.796 | 98 | 59 | 0 | 41 | 138 | 178 | 275 | 5.66e-11 | 61.2 |
| Msa0716280 | AT4G17460.1 | 40.952 | 105 | 53 | 2 | 43 | 142 | 129 | 229 | 9.29e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTATATGTATTTATAAT+AGG | 0.161447 | 5_1:-9713763 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5_1:-9714305 | None:intergenic |
| TAAGCATCATTTGATCTTGA+TGG | 0.301728 | 5_1:-9713926 | None:intergenic |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5_1:-9714283 | None:intergenic |
| TTCTATATGTATTTATAATA+GGG | 0.309158 | 5_1:-9713762 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5_1:-9714102 | None:intergenic |
| TGATGAACAAGTGAATATTT+TGG | 0.337098 | 5_1:+9714185 | Msa0716280:CDS |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5_1:-9715068 | None:intergenic |
| AAGGAGACACTTCTCGAGTA+TGG | 0.353926 | 5_1:-9714382 | None:intergenic |
| CTGCTTGGTACCCTTTCAAT+TGG | 0.372213 | 5_1:-9714939 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5_1:+9714280 | Msa0716280:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5_1:-9714108 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5_1:-9714401 | None:intergenic |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5_1:+9714252 | Msa0716280:CDS |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_1:+9714230 | Msa0716280:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5_1:+9714983 | Msa0716280:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5_1:-9714282 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5_1:+9714295 | Msa0716280:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5_1:+9715020 | Msa0716280:CDS |
| ACACCAAATTCACCAAGAAA+AGG | 0.517876 | 5_1:-9715011 | None:intergenic |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5_1:+9714301 | Msa0716280:CDS |
| ATTTGTGTGTATTCACAAGC+GGG | 0.527508 | 5_1:-9713963 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5_1:+9714235 | Msa0716280:CDS |
| AATCTGAGAAAGAAATTCAA+AGG | 0.550958 | 5_1:+9714907 | Msa0716280:CDS |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5_1:+9714929 | Msa0716280:CDS |
| CCAAATTCACCAAGAAAAGG+TGG | 0.566129 | 5_1:-9715008 | None:intergenic |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5_1:+9715081 | Msa0716280:CDS |
| TCTATATGTATTTATAATAG+GGG | 0.566682 | 5_1:-9713761 | None:intergenic |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5_1:+9714928 | Msa0716280:CDS |
| GAAGTACTTGAACTGCTGCT+TGG | 0.579452 | 5_1:-9714954 | None:intergenic |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5_1:-9714979 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5_1:+9714974 | Msa0716280:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5_1:+9714245 | Msa0716280:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | 5_1:+9715071 | Msa0716280:CDS |
| GATTTGTGTGTATTCACAAG+CGG | 0.602684 | 5_1:-9713964 | None:intergenic |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5_1:+9714120 | Msa0716280:CDS |
| AAAGGTGGAGAAAACAGTGC+TGG | 0.615811 | 5_1:+9714135 | Msa0716280:CDS |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | 5_1:+9715076 | Msa0716280:CDS |
| TTTGTAGGTGTTGAAGCTAG+CGG | 0.631907 | 5_1:+9714872 | Msa0716280:intron |
| GAGACACTTCTCGAGTATGG+TGG | 0.632339 | 5_1:-9714379 | None:intergenic |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.653831 | 5_1:+9714392 | Msa0716280:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5_1:+9714304 | Msa0716280:CDS |
| ACACAAATCATTTCTCAACA+AGG | 0.663256 | 5_1:+9713978 | Msa0716280:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5_1:+9714117 | Msa0716280:CDS |
| CAAATTCACCAAGAAAAGGT+GGG | 0.668413 | 5_1:-9715007 | None:intergenic |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5_1:+9714296 | Msa0716280:CDS |
| TTTGTGTGTATTCACAAGCG+GGG | 0.712271 | 5_1:-9713962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_1:9713765-9713784 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_1:9714504-9714523 | Msa0716280:intron | 10.0% |
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_1:9713765-9713784 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_1:9714504-9714523 | Msa0716280:intron | 10.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_1:9713764-9713783 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_1:9713766-9713785 | None:intergenic | 15.0% |
| !!! | TATTTTTGGTATGTTTTTTT+AGG | + | chr5_1:9714069-9714088 | Msa0716280:intron | 15.0% |
| !!! | ATTTTTGGTATGTTTTTTTA+GGG | + | chr5_1:9714070-9714089 | Msa0716280:intron | 15.0% |
| !! | GAACATTATATAATATTGTA+CGG | - | chr5_1:9714843-9714862 | None:intergenic | 15.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_1:9713764-9713783 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_1:9713766-9713785 | None:intergenic | 15.0% |
| !!! | TATTTTTGGTATGTTTTTTT+AGG | + | chr5_1:9714069-9714088 | Msa0716280:intron | 15.0% |
| !!! | ATTTTTGGTATGTTTTTTTA+GGG | + | chr5_1:9714070-9714089 | Msa0716280:intron | 15.0% |
| !! | GAACATTATATAATATTGTA+CGG | - | chr5_1:9714843-9714862 | None:intergenic | 15.0% |
| !!! | CATTACTCATTCTTTTAATT+AGG | + | chr5_1:9713830-9713849 | Msa0716280:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_1:9714071-9714090 | Msa0716280:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_1:9714509-9714528 | Msa0716280:intron | 20.0% |
| !!! | ATATAGTCTTGTAATATTGT+TGG | - | chr5_1:9714579-9714598 | None:intergenic | 20.0% |
| !!! | AATATATATGGTGACATTTT+TGG | - | chr5_1:9714819-9714838 | None:intergenic | 20.0% |
| !! | ATATTGTACGGAAATATATA+TGG | - | chr5_1:9714831-9714850 | None:intergenic | 20.0% |
| !!! | CATTACTCATTCTTTTAATT+AGG | + | chr5_1:9713830-9713849 | Msa0716280:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_1:9714071-9714090 | Msa0716280:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_1:9714509-9714528 | Msa0716280:intron | 20.0% |
| !!! | ATATAGTCTTGTAATATTGT+TGG | - | chr5_1:9714579-9714598 | None:intergenic | 20.0% |
| !!! | AATATATATGGTGACATTTT+TGG | - | chr5_1:9714819-9714838 | None:intergenic | 20.0% |
| !! | ATATTGTACGGAAATATATA+TGG | - | chr5_1:9714831-9714850 | None:intergenic | 20.0% |
| !! | TGATGAACAAGTGAATATTT+TGG | + | chr5_1:9714185-9714204 | Msa0716280:CDS | 25.0% |
| !!! | AATATTTTGGAGCAAAACTT+TGG | + | chr5_1:9714198-9714217 | Msa0716280:CDS | 25.0% |
| ! | AATATAAAAGAGGAAGAAAG+AGG | - | chr5_1:9714422-9714441 | None:intergenic | 25.0% |
| ! | CATCATGGTGAATAAAATAA+TGG | - | chr5_1:9714740-9714759 | None:intergenic | 25.0% |
| ! | TATAAGCATTTACAACATCA+TGG | - | chr5_1:9714755-9714774 | None:intergenic | 25.0% |
| !! | TTTAATCAAAAGCACAAACA+AGG | + | chr5_1:9714789-9714808 | Msa0716280:intron | 25.0% |
| ! | ATGTTCCATAAATTGTTTGT+AGG | + | chr5_1:9714857-9714876 | Msa0716280:intron | 25.0% |
| ! | AATCTGAGAAAGAAATTCAA+AGG | + | chr5_1:9714907-9714926 | Msa0716280:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_1:9715071-9715090 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_1:9715071-9715090 | Msa0716280:CDS | 25.0% |
| !! | TGATGAACAAGTGAATATTT+TGG | + | chr5_1:9714185-9714204 | Msa0716280:CDS | 25.0% |
| !!! | AATATTTTGGAGCAAAACTT+TGG | + | chr5_1:9714198-9714217 | Msa0716280:CDS | 25.0% |
| ! | AATATAAAAGAGGAAGAAAG+AGG | - | chr5_1:9714422-9714441 | None:intergenic | 25.0% |
| ! | CATCATGGTGAATAAAATAA+TGG | - | chr5_1:9714740-9714759 | None:intergenic | 25.0% |
| ! | TATAAGCATTTACAACATCA+TGG | - | chr5_1:9714755-9714774 | None:intergenic | 25.0% |
| !! | TTTAATCAAAAGCACAAACA+AGG | + | chr5_1:9714789-9714808 | Msa0716280:intron | 25.0% |
| ! | ATGTTCCATAAATTGTTTGT+AGG | + | chr5_1:9714857-9714876 | Msa0716280:intron | 25.0% |
| ! | AATCTGAGAAAGAAATTCAA+AGG | + | chr5_1:9714907-9714926 | Msa0716280:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_1:9715071-9715090 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_1:9715071-9715090 | Msa0716280:CDS | 25.0% |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_1:9713803-9713822 | None:intergenic | 30.0% |
| TAAGCATCATTTGATCTTGA+TGG | - | chr5_1:9713929-9713948 | None:intergenic | 30.0% | |
| ACACAAATCATTTCTCAACA+AGG | + | chr5_1:9713978-9713997 | Msa0716280:CDS | 30.0% | |
| CTGGTGAATTAAACAAAAAG+AGG | + | chr5_1:9714154-9714173 | Msa0716280:CDS | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_1:9714625-9714644 | Msa0716280:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_1:9714626-9714645 | Msa0716280:intron | 30.0% | |
| CAACACCTACAAACAATTTA+TGG | - | chr5_1:9714865-9714884 | None:intergenic | 30.0% | |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_1:9713803-9713822 | None:intergenic | 30.0% |
| TAAGCATCATTTGATCTTGA+TGG | - | chr5_1:9713929-9713948 | None:intergenic | 30.0% | |
| ACACAAATCATTTCTCAACA+AGG | + | chr5_1:9713978-9713997 | Msa0716280:CDS | 30.0% | |
| CTGGTGAATTAAACAAAAAG+AGG | + | chr5_1:9714154-9714173 | Msa0716280:CDS | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_1:9714625-9714644 | Msa0716280:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_1:9714626-9714645 | Msa0716280:intron | 30.0% | |
| CAACACCTACAAACAATTTA+TGG | - | chr5_1:9714865-9714884 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_1:9713789-9713808 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_1:9713790-9713809 | Msa0716280:five_prime_UTR | 35.0% | |
| ATTTGTGTGTATTCACAAGC+GGG | - | chr5_1:9713966-9713985 | None:intergenic | 35.0% | |
| GATTTGTGTGTATTCACAAG+CGG | - | chr5_1:9713967-9713986 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_1:9714117-9714136 | Msa0716280:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_1:9714230-9714249 | Msa0716280:CDS | 35.0% | |
| !! | TGTTACTTTAGCTCTACATG+TGG | + | chr5_1:9714708-9714727 | Msa0716280:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_1:9715010-9715029 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_1:9715014-9715033 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_1:9715020-9715039 | Msa0716280:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_1:9715076-9715095 | Msa0716280:CDS | 35.0% | |
| ! | TATAATAGGGGTGAAGTGTT+GGG | - | chr5_1:9713752-9713771 | None:intergenic | 35.0% |
| TTATAATAGGGGTGAAGTGT+TGG | - | chr5_1:9713753-9713772 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_1:9713789-9713808 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_1:9713790-9713809 | Msa0716280:five_prime_UTR | 35.0% | |
| ATTTGTGTGTATTCACAAGC+GGG | - | chr5_1:9713966-9713985 | None:intergenic | 35.0% | |
| GATTTGTGTGTATTCACAAG+CGG | - | chr5_1:9713967-9713986 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_1:9714117-9714136 | Msa0716280:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_1:9714230-9714249 | Msa0716280:CDS | 35.0% | |
| !! | TGTTACTTTAGCTCTACATG+TGG | + | chr5_1:9714708-9714727 | Msa0716280:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_1:9715010-9715029 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_1:9715014-9715033 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_1:9715020-9715039 | Msa0716280:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_1:9715076-9715095 | Msa0716280:CDS | 35.0% | |
| TTTGTGTGTATTCACAAGCG+GGG | - | chr5_1:9713965-9713984 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_1:9714120-9714139 | Msa0716280:CDS | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_1:9714235-9714254 | Msa0716280:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_1:9714285-9714304 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_1:9714296-9714315 | Msa0716280:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_1:9714404-9714423 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_1:9714412-9714431 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_1:9714654-9714673 | Msa0716280:intron | 40.0% | |
| !! | TTTGTAGGTGTTGAAGCTAG+CGG | + | chr5_1:9714872-9714891 | Msa0716280:intron | 40.0% |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_1:9715011-9715030 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_1:9715008-9715027 | Msa0716280:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_1:9715081-9715100 | Msa0716280:CDS | 40.0% | |
| TTTGTGTGTATTCACAAGCG+GGG | - | chr5_1:9713965-9713984 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_1:9714120-9714139 | Msa0716280:CDS | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_1:9714235-9714254 | Msa0716280:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_1:9714285-9714304 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_1:9714296-9714315 | Msa0716280:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_1:9714404-9714423 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_1:9714412-9714431 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_1:9714654-9714673 | Msa0716280:intron | 40.0% | |
| !! | TTTGTAGGTGTTGAAGCTAG+CGG | + | chr5_1:9714872-9714891 | Msa0716280:intron | 40.0% |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_1:9715011-9715030 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_1:9715008-9715027 | Msa0716280:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_1:9715081-9715100 | Msa0716280:CDS | 40.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_1:9714111-9714130 | None:intergenic | 45.0% | |
| AAAGGTGGAGAAAACAGTGC+TGG | + | chr5_1:9714135-9714154 | Msa0716280:CDS | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_1:9714245-9714264 | Msa0716280:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_1:9714280-9714299 | Msa0716280:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_1:9714286-9714305 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_1:9714295-9714314 | Msa0716280:CDS | 45.0% |
| AAGGAGACACTTCTCGAGTA+TGG | - | chr5_1:9714385-9714404 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_1:9714392-9714411 | Msa0716280:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_1:9714657-9714676 | Msa0716280:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_1:9714663-9714682 | None:intergenic | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_1:9714929-9714948 | Msa0716280:CDS | 45.0% | |
| CTGCTTGGTACCCTTTCAAT+TGG | - | chr5_1:9714942-9714961 | None:intergenic | 45.0% | |
| ! | GAAGTACTTGAACTGCTGCT+TGG | - | chr5_1:9714957-9714976 | None:intergenic | 45.0% |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_1:9714974-9714993 | Msa0716280:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_1:9714982-9715001 | None:intergenic | 45.0% |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_1:9714111-9714130 | None:intergenic | 45.0% | |
| AAAGGTGGAGAAAACAGTGC+TGG | + | chr5_1:9714135-9714154 | Msa0716280:CDS | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_1:9714245-9714264 | Msa0716280:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_1:9714280-9714299 | Msa0716280:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_1:9714286-9714305 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_1:9714295-9714314 | Msa0716280:CDS | 45.0% |
| AAGGAGACACTTCTCGAGTA+TGG | - | chr5_1:9714385-9714404 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_1:9714392-9714411 | Msa0716280:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_1:9714657-9714676 | Msa0716280:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_1:9714663-9714682 | None:intergenic | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_1:9714929-9714948 | Msa0716280:CDS | 45.0% | |
| CTGCTTGGTACCCTTTCAAT+TGG | - | chr5_1:9714942-9714961 | None:intergenic | 45.0% | |
| ! | GAAGTACTTGAACTGCTGCT+TGG | - | chr5_1:9714957-9714976 | None:intergenic | 45.0% |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_1:9714974-9714993 | Msa0716280:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_1:9714982-9715001 | None:intergenic | 45.0% |
| !!! | ATAGTTAATTATAATATTTT+TGG | + | chr5_1:9714055-9714074 | Msa0716280:intron | 5.0% |
| !! | AATAATAAATAATATAAAAG+AGG | - | chr5_1:9714432-9714451 | None:intergenic | 5.0% |
| !!! | ATAGTTAATTATAATATTTT+TGG | + | chr5_1:9714055-9714074 | Msa0716280:intron | 5.0% |
| !! | AATAATAAATAATATAAAAG+AGG | - | chr5_1:9714432-9714451 | None:intergenic | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_1:9714252-9714271 | Msa0716280:CDS | 50.0% | |
| GAGACACTTCTCGAGTATGG+TGG | - | chr5_1:9714382-9714401 | None:intergenic | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_1:9714928-9714947 | Msa0716280:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_1:9714983-9715002 | Msa0716280:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_1:9714999-9715018 | Msa0716280:CDS | 50.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_1:9714252-9714271 | Msa0716280:CDS | 50.0% | |
| GAGACACTTCTCGAGTATGG+TGG | - | chr5_1:9714382-9714401 | None:intergenic | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_1:9714928-9714947 | Msa0716280:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_1:9714983-9715002 | Msa0716280:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_1:9714999-9715018 | Msa0716280:CDS | 50.0% |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_1:9714105-9714124 | None:intergenic | 55.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_1:9714301-9714320 | Msa0716280:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_1:9714304-9714323 | Msa0716280:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_1:9714308-9714327 | None:intergenic | 55.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_1:9714105-9714124 | None:intergenic | 55.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_1:9714301-9714320 | Msa0716280:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_1:9714304-9714323 | Msa0716280:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_1:9714308-9714327 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9713751 | 9715188 | 9713751 | ID=Msa0716280;Name=Msa0716280 |
| chr5_1 | mRNA | 9713751 | 9715188 | 9713751 | ID=Msa0716280-mRNA-1;Parent=Msa0716280;Name=Msa0716280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|3|67|214 |
| chr5_1 | exon | 9713751 | 9713999 | 9713751 | ID=Msa0716280-mRNA-1:exon:3870;Parent=Msa0716280-mRNA-1 |
| chr5_1 | exon | 9714091 | 9714413 | 9714091 | ID=Msa0716280-mRNA-1:exon:3871;Parent=Msa0716280-mRNA-1 |
| chr5_1 | exon | 9714879 | 9715188 | 9714879 | ID=Msa0716280-mRNA-1:exon:3872;Parent=Msa0716280-mRNA-1 |
| chr5_1 | five_prime_UTR | 9713751 | 9713920 | 9713751 | ID=Msa0716280-mRNA-1:five_prime_utr;Parent=Msa0716280-mRNA-1 |
| chr5_1 | CDS | 9713921 | 9713999 | 9713921 | ID=Msa0716280-mRNA-1:cds;Parent=Msa0716280-mRNA-1 |
| chr5_1 | CDS | 9714091 | 9714413 | 9714091 | ID=Msa0716280-mRNA-1:cds;Parent=Msa0716280-mRNA-1 |
| chr5_1 | CDS | 9714879 | 9715121 | 9714879 | ID=Msa0716280-mRNA-1:cds;Parent=Msa0716280-mRNA-1 |
| chr5_1 | three_prime_UTR | 9715122 | 9715188 | 9715122 | ID=Msa0716280-mRNA-1:three_prime_utr;Parent=Msa0716280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
