Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757590 | XP_003611946.1 | 90.950 | 221 | 13 | 1 | 1 | 214 | 1 | 221 | 1.26e-134 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757590 | sp|O23208|ATB40_ARATH | 54.286 | 210 | 91 | 4 | 7 | 214 | 10 | 216 | 3.17e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757590 | G7KC72 | 90.950 | 221 | 13 | 1 | 1 | 214 | 1 | 221 | 6.00e-135 | 387 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0757590 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0716280 | Msa0757590 | 0.823048 | 1.708309e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757590 | MtrunA17_Chr5g0403691 | 90.950 | 221 | 13 | 1 | 1 | 214 | 1 | 221 | 1.16e-138 | 387 |
| Msa0757590 | MtrunA17_Chr5g0403701 | 83.019 | 212 | 31 | 1 | 1 | 212 | 1 | 207 | 3.03e-121 | 342 |
| Msa0757590 | MtrunA17_Chr4g0060031 | 42.446 | 139 | 62 | 3 | 34 | 154 | 65 | 203 | 8.45e-25 | 99.4 |
| Msa0757590 | MtrunA17_Chr6g0450991 | 49.550 | 111 | 47 | 2 | 53 | 156 | 67 | 175 | 5.02e-24 | 96.7 |
| Msa0757590 | MtrunA17_Chr7g0265521 | 36.747 | 166 | 87 | 3 | 53 | 204 | 63 | 224 | 2.29e-23 | 93.6 |
| Msa0757590 | MtrunA17_Chr3g0123691 | 62.162 | 74 | 28 | 0 | 53 | 126 | 60 | 133 | 8.53e-23 | 93.6 |
| Msa0757590 | MtrunA17_Chr8g0381741 | 62.162 | 74 | 28 | 0 | 53 | 126 | 54 | 127 | 3.40e-22 | 92.0 |
| Msa0757590 | MtrunA17_Chr8g0362751 | 47.664 | 107 | 49 | 1 | 53 | 152 | 89 | 195 | 2.68e-21 | 89.4 |
| Msa0757590 | MtrunA17_Chr5g0415941 | 63.380 | 71 | 26 | 0 | 53 | 123 | 87 | 157 | 3.64e-21 | 89.4 |
| Msa0757590 | MtrunA17_Chr6g0453021 | 52.525 | 99 | 45 | 1 | 44 | 142 | 89 | 185 | 4.81e-21 | 88.2 |
| Msa0757590 | MtrunA17_Chr5g0416391 | 47.321 | 112 | 52 | 2 | 48 | 159 | 74 | 178 | 5.84e-21 | 88.2 |
| Msa0757590 | MtrunA17_Chr3g0127511 | 41.135 | 141 | 66 | 3 | 55 | 195 | 40 | 163 | 1.45e-20 | 86.7 |
| Msa0757590 | MtrunA17_Chr8g0362151 | 45.794 | 107 | 53 | 1 | 53 | 159 | 77 | 178 | 1.57e-20 | 87.0 |
| Msa0757590 | MtrunA17_Chr3g0119291 | 47.000 | 100 | 53 | 0 | 45 | 144 | 51 | 150 | 6.00e-19 | 82.4 |
| Msa0757590 | MtrunA17_Chr1g0179581 | 47.126 | 87 | 46 | 0 | 49 | 135 | 24 | 110 | 6.43e-19 | 78.6 |
| Msa0757590 | MtrunA17_Chr8g0346251 | 44.954 | 109 | 53 | 2 | 57 | 163 | 45 | 148 | 1.57e-18 | 81.3 |
| Msa0757590 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 53 | 142 | 80 | 169 | 1.17e-15 | 73.6 |
| Msa0757590 | MtrunA17_Chr4g0055851 | 40.367 | 109 | 60 | 1 | 39 | 142 | 106 | 214 | 1.37e-13 | 68.2 |
| Msa0757590 | MtrunA17_Chr4g0044091 | 52.239 | 67 | 32 | 0 | 53 | 119 | 65 | 131 | 2.17e-13 | 66.2 |
| Msa0757590 | MtrunA17_Chr4g0054421 | 41.748 | 103 | 55 | 1 | 45 | 142 | 119 | 221 | 1.08e-12 | 65.5 |
| Msa0757590 | MtrunA17_Chr2g0308611 | 37.302 | 126 | 73 | 2 | 53 | 172 | 200 | 325 | 1.08e-12 | 65.9 |
| Msa0757590 | MtrunA17_Chr8g0335131 | 43.158 | 95 | 49 | 1 | 53 | 142 | 146 | 240 | 2.12e-12 | 64.7 |
| Msa0757590 | MtrunA17_Chr7g0258831 | 37.500 | 112 | 65 | 1 | 34 | 140 | 141 | 252 | 8.36e-12 | 63.2 |
| Msa0757590 | MtrunA17_Chr2g0299031 | 35.385 | 130 | 63 | 2 | 53 | 182 | 82 | 190 | 2.56e-11 | 60.8 |
| Msa0757590 | MtrunA17_Chr1g0175651 | 41.237 | 97 | 52 | 1 | 49 | 140 | 150 | 246 | 3.47e-11 | 61.2 |
| Msa0757590 | MtrunA17_Chr1g0151971 | 47.887 | 71 | 37 | 0 | 53 | 123 | 130 | 200 | 5.32e-11 | 60.8 |
| Msa0757590 | MtrunA17_Chr5g0400781 | 42.000 | 100 | 53 | 1 | 48 | 142 | 118 | 217 | 6.32e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757590 | AT4G36740.2 | 54.976 | 211 | 89 | 5 | 7 | 214 | 10 | 217 | 6.62e-67 | 205 |
| Msa0757590 | AT4G36740.1 | 54.286 | 210 | 91 | 4 | 7 | 214 | 10 | 216 | 3.22e-66 | 203 |
| Msa0757590 | AT2G18550.1 | 48.000 | 225 | 101 | 7 | 1 | 214 | 1 | 220 | 2.58e-63 | 196 |
| Msa0757590 | AT5G66700.1 | 47.111 | 225 | 99 | 6 | 5 | 214 | 9 | 228 | 3.41e-48 | 158 |
| Msa0757590 | AT3G01470.1 | 52.577 | 97 | 39 | 1 | 53 | 142 | 68 | 164 | 6.09e-25 | 99.0 |
| Msa0757590 | AT1G69780.1 | 40.000 | 155 | 76 | 3 | 2 | 142 | 23 | 174 | 6.42e-23 | 94.0 |
| Msa0757590 | AT4G40060.1 | 59.259 | 81 | 33 | 0 | 43 | 123 | 49 | 129 | 7.49e-23 | 94.0 |
| Msa0757590 | AT2G22430.1 | 63.158 | 76 | 28 | 0 | 48 | 123 | 57 | 132 | 1.50e-22 | 93.6 |
| Msa0757590 | AT5G65310.2 | 57.500 | 80 | 34 | 0 | 44 | 123 | 45 | 124 | 4.75e-22 | 91.7 |
| Msa0757590 | AT5G65310.1 | 57.500 | 80 | 34 | 0 | 44 | 123 | 63 | 142 | 5.05e-22 | 92.0 |
| Msa0757590 | AT5G03790.1 | 49.462 | 93 | 47 | 0 | 46 | 138 | 70 | 162 | 9.80e-22 | 89.7 |
| Msa0757590 | AT5G03790.2 | 41.667 | 120 | 70 | 0 | 19 | 138 | 43 | 162 | 1.62e-21 | 88.2 |
| Msa0757590 | AT2G46680.1 | 41.406 | 128 | 68 | 1 | 52 | 179 | 31 | 151 | 2.19e-21 | 89.4 |
| Msa0757590 | AT2G46680.2 | 40.602 | 133 | 60 | 2 | 52 | 179 | 31 | 149 | 2.52e-20 | 86.3 |
| Msa0757590 | AT1G26960.1 | 41.007 | 139 | 72 | 2 | 53 | 186 | 71 | 204 | 3.21e-20 | 86.3 |
| Msa0757590 | AT2G36610.1 | 45.192 | 104 | 49 | 2 | 49 | 144 | 67 | 170 | 2.82e-19 | 82.0 |
| Msa0757590 | AT5G15150.1 | 42.373 | 118 | 68 | 0 | 53 | 170 | 115 | 232 | 1.10e-18 | 82.8 |
| Msa0757590 | AT1G27045.2 | 41.221 | 131 | 64 | 2 | 50 | 167 | 14 | 144 | 1.01e-17 | 77.8 |
| Msa0757590 | AT3G01220.1 | 53.247 | 77 | 34 | 1 | 43 | 119 | 79 | 153 | 1.02e-17 | 79.7 |
| Msa0757590 | AT1G27045.1 | 41.221 | 131 | 64 | 2 | 50 | 167 | 65 | 195 | 1.20e-17 | 78.6 |
| Msa0757590 | AT1G27045.5 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 1.27e-17 | 77.8 |
| Msa0757590 | AT1G27045.3 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 1.27e-17 | 77.8 |
| Msa0757590 | AT5G53980.1 | 37.063 | 143 | 71 | 3 | 52 | 194 | 10 | 133 | 1.43e-17 | 76.6 |
| Msa0757590 | AT3G61890.1 | 43.434 | 99 | 56 | 0 | 56 | 154 | 33 | 131 | 2.03e-17 | 78.2 |
| Msa0757590 | AT1G27045.4 | 46.237 | 93 | 43 | 1 | 50 | 135 | 65 | 157 | 4.82e-16 | 74.7 |
| Msa0757590 | AT2G22800.1 | 45.161 | 93 | 46 | 2 | 53 | 140 | 113 | 205 | 4.79e-12 | 63.9 |
| Msa0757590 | AT2G01430.1 | 34.559 | 136 | 74 | 2 | 45 | 179 | 131 | 252 | 6.75e-12 | 63.5 |
| Msa0757590 | AT1G70920.2 | 46.835 | 79 | 42 | 0 | 41 | 119 | 27 | 105 | 1.17e-11 | 61.6 |
| Msa0757590 | AT4G16780.1 | 40.385 | 104 | 53 | 2 | 44 | 142 | 124 | 223 | 1.21e-11 | 62.8 |
| Msa0757590 | AT1G70920.1 | 46.835 | 79 | 42 | 0 | 41 | 119 | 57 | 135 | 1.59e-11 | 61.6 |
| Msa0757590 | AT4G37790.1 | 43.011 | 93 | 48 | 1 | 53 | 140 | 126 | 218 | 3.46e-11 | 61.6 |
| Msa0757590 | AT5G06710.1 | 39.796 | 98 | 59 | 0 | 41 | 138 | 178 | 275 | 7.83e-11 | 60.8 |
| Msa0757590 | AT4G17460.1 | 39.535 | 129 | 70 | 4 | 45 | 165 | 126 | 254 | 8.19e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTATATGTATTTATAAT+AGG | 0.161447 | 5_2:-12546011 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5_2:-12546553 | None:intergenic |
| TAAGCATCATTTGATCTTGA+TGG | 0.301728 | 5_2:-12546174 | None:intergenic |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5_2:-12546531 | None:intergenic |
| TTCTATATGTATTTATAATA+GGG | 0.309158 | 5_2:-12546010 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5_2:-12546350 | None:intergenic |
| TGATGAACAAGTGAATATTT+TGG | 0.337098 | 5_2:+12546433 | Msa0757590:CDS |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5_2:-12547331 | None:intergenic |
| AAGGAGACACTTCTCGAGTA+TGG | 0.353926 | 5_2:-12546630 | None:intergenic |
| CTGCTTGTTACCCTTTCAAT+TGG | 0.372213 | 5_2:-12547202 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5_2:+12546528 | Msa0757590:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5_2:-12546356 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5_2:-12546649 | None:intergenic |
| CCAAATTCACCAAGAAAAGT+AGG | 0.443141 | 5_2:-12547271 | None:intergenic |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5_2:+12546500 | Msa0757590:CDS |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_2:+12546478 | Msa0757590:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5_2:+12547246 | Msa0757590:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5_2:-12546530 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5_2:+12546543 | Msa0757590:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5_2:+12547283 | Msa0757590:CDS |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5_2:+12546549 | Msa0757590:CDS |
| ATTTGTGTGTATTCACAAGC+GGG | 0.527508 | 5_2:-12546211 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5_2:+12546483 | Msa0757590:CDS |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5_2:+12547192 | Msa0757590:CDS |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5_2:+12547344 | Msa0757590:CDS |
| TCTATATGTATTTATAATAG+GGG | 0.566682 | 5_2:-12546009 | None:intergenic |
| TTTGTAGGTGTTGAAGCTAA+CGG | 0.568585 | 5_2:+12547135 | Msa0757590:intron |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5_2:+12547191 | Msa0757590:CDS |
| AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | 5_2:+12547170 | Msa0757590:CDS |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5_2:-12547242 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5_2:+12547237 | Msa0757590:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5_2:+12546493 | Msa0757590:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | 5_2:+12547334 | Msa0757590:CDS |
| CAAATTCACCAAGAAAAGTA+GGG | 0.602090 | 5_2:-12547270 | None:intergenic |
| GATTTGTGTGTATTCACAAG+CGG | 0.602684 | 5_2:-12546212 | None:intergenic |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5_2:+12546368 | Msa0757590:CDS |
| AAAGGTGGAGAAAACAGTGC+TGG | 0.615811 | 5_2:+12546383 | Msa0757590:CDS |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | 5_2:+12547339 | Msa0757590:CDS |
| GAGACACTTCTCGAGTATGG+TGG | 0.632339 | 5_2:-12546627 | None:intergenic |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.653831 | 5_2:+12546640 | Msa0757590:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5_2:+12546552 | Msa0757590:CDS |
| ACACAAATCATTTCTCAACA+AGG | 0.663256 | 5_2:+12546226 | Msa0757590:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5_2:+12546365 | Msa0757590:CDS |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5_2:+12546544 | Msa0757590:CDS |
| TTTGTGTGTATTCACAAGCG+GGG | 0.712271 | 5_2:-12546210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_2:12546013-12546032 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_2:12546752-12546771 | Msa0757590:intron | 10.0% |
| !!! | TTTATTTTATTCACATATTT+TGG | + | chr5_2:12546936-12546955 | Msa0757590:intron | 10.0% |
| !!! | TTATTTTATTCACATATTTT+GGG | + | chr5_2:12546937-12546956 | Msa0757590:intron | 10.0% |
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_2:12546013-12546032 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_2:12546752-12546771 | Msa0757590:intron | 10.0% |
| !!! | TTTATTTTATTCACATATTT+TGG | + | chr5_2:12546936-12546955 | Msa0757590:intron | 10.0% |
| !!! | TTATTTTATTCACATATTTT+GGG | + | chr5_2:12546937-12546956 | Msa0757590:intron | 10.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_2:12546012-12546031 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_2:12546014-12546033 | None:intergenic | 15.0% |
| !!! | TATTTTTGGTATGTTTTTTT+AGG | + | chr5_2:12546317-12546336 | Msa0757590:intron | 15.0% |
| !!! | ATTTTTGGTATGTTTTTTTA+GGG | + | chr5_2:12546318-12546337 | Msa0757590:intron | 15.0% |
| !! | GAACATTAAATAATATTGTA+CGG | - | chr5_2:12547106-12547125 | None:intergenic | 15.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_2:12546012-12546031 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_2:12546014-12546033 | None:intergenic | 15.0% |
| !!! | TATTTTTGGTATGTTTTTTT+AGG | + | chr5_2:12546317-12546336 | Msa0757590:intron | 15.0% |
| !!! | ATTTTTGGTATGTTTTTTTA+GGG | + | chr5_2:12546318-12546337 | Msa0757590:intron | 15.0% |
| !! | GAACATTAAATAATATTGTA+CGG | - | chr5_2:12547106-12547125 | None:intergenic | 15.0% |
| !!! | CATTACTCATTCTTTTAATT+AGG | + | chr5_2:12546078-12546097 | Msa0757590:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_2:12546319-12546338 | Msa0757590:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_2:12546757-12546776 | Msa0757590:intron | 20.0% |
| !!! | ATATAGTCTTGTAATATTGT+TGG | - | chr5_2:12546827-12546846 | None:intergenic | 20.0% |
| !!! | AATATATATGGTGACATTTT+TGG | - | chr5_2:12547082-12547101 | None:intergenic | 20.0% |
| !! | ATATTGTACGGAAATATATA+TGG | - | chr5_2:12547094-12547113 | None:intergenic | 20.0% |
| !!! | CATTACTCATTCTTTTAATT+AGG | + | chr5_2:12546078-12546097 | Msa0757590:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_2:12546319-12546338 | Msa0757590:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_2:12546757-12546776 | Msa0757590:intron | 20.0% |
| !!! | ATATAGTCTTGTAATATTGT+TGG | - | chr5_2:12546827-12546846 | None:intergenic | 20.0% |
| !!! | AATATATATGGTGACATTTT+TGG | - | chr5_2:12547082-12547101 | None:intergenic | 20.0% |
| !! | ATATTGTACGGAAATATATA+TGG | - | chr5_2:12547094-12547113 | None:intergenic | 20.0% |
| !! | TGATGAACAAGTGAATATTT+TGG | + | chr5_2:12546433-12546452 | Msa0757590:CDS | 25.0% |
| !!! | AATATTTTGGAGCAAAACTT+TGG | + | chr5_2:12546446-12546465 | Msa0757590:CDS | 25.0% |
| ! | AATATAAAAGAGGAAGAAAG+AGG | - | chr5_2:12546670-12546689 | None:intergenic | 25.0% |
| ! | CATCATGGTGAATAAAATAA+TGG | - | chr5_2:12547003-12547022 | None:intergenic | 25.0% |
| ! | TATAAGCATTTACAACATCA+TGG | - | chr5_2:12547018-12547037 | None:intergenic | 25.0% |
| !! | TTTAATCAAAAGCACAAACA+AGG | + | chr5_2:12547052-12547071 | Msa0757590:intron | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_2:12547170-12547189 | Msa0757590:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_2:12547334-12547353 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_2:12547334-12547353 | Msa0757590:CDS | 25.0% |
| !! | TGATGAACAAGTGAATATTT+TGG | + | chr5_2:12546433-12546452 | Msa0757590:CDS | 25.0% |
| !!! | AATATTTTGGAGCAAAACTT+TGG | + | chr5_2:12546446-12546465 | Msa0757590:CDS | 25.0% |
| ! | AATATAAAAGAGGAAGAAAG+AGG | - | chr5_2:12546670-12546689 | None:intergenic | 25.0% |
| ! | CATCATGGTGAATAAAATAA+TGG | - | chr5_2:12547003-12547022 | None:intergenic | 25.0% |
| ! | TATAAGCATTTACAACATCA+TGG | - | chr5_2:12547018-12547037 | None:intergenic | 25.0% |
| !! | TTTAATCAAAAGCACAAACA+AGG | + | chr5_2:12547052-12547071 | Msa0757590:intron | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_2:12547170-12547189 | Msa0757590:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_2:12547334-12547353 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_2:12547334-12547353 | Msa0757590:CDS | 25.0% |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_2:12546051-12546070 | None:intergenic | 30.0% |
| TAAGCATCATTTGATCTTGA+TGG | - | chr5_2:12546177-12546196 | None:intergenic | 30.0% | |
| ACACAAATCATTTCTCAACA+AGG | + | chr5_2:12546226-12546245 | Msa0757590:CDS | 30.0% | |
| CTGGTGAATTAAACAAAAAG+AGG | + | chr5_2:12546402-12546421 | Msa0757590:CDS | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_2:12546873-12546892 | Msa0757590:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_2:12546874-12546893 | Msa0757590:intron | 30.0% | |
| ATGTTCCATACATTGTTTGT+AGG | + | chr5_2:12547120-12547139 | Msa0757590:intron | 30.0% | |
| CAAATTCACCAAGAAAAGTA+GGG | - | chr5_2:12547273-12547292 | None:intergenic | 30.0% | |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_2:12546051-12546070 | None:intergenic | 30.0% |
| TAAGCATCATTTGATCTTGA+TGG | - | chr5_2:12546177-12546196 | None:intergenic | 30.0% | |
| ACACAAATCATTTCTCAACA+AGG | + | chr5_2:12546226-12546245 | Msa0757590:CDS | 30.0% | |
| CTGGTGAATTAAACAAAAAG+AGG | + | chr5_2:12546402-12546421 | Msa0757590:CDS | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_2:12546873-12546892 | Msa0757590:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_2:12546874-12546893 | Msa0757590:intron | 30.0% | |
| ATGTTCCATACATTGTTTGT+AGG | + | chr5_2:12547120-12547139 | Msa0757590:intron | 30.0% | |
| CAAATTCACCAAGAAAAGTA+GGG | - | chr5_2:12547273-12547292 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_2:12546037-12546056 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_2:12546038-12546057 | Msa0757590:five_prime_UTR | 35.0% | |
| ATTTGTGTGTATTCACAAGC+GGG | - | chr5_2:12546214-12546233 | None:intergenic | 35.0% | |
| GATTTGTGTGTATTCACAAG+CGG | - | chr5_2:12546215-12546234 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_2:12546365-12546384 | Msa0757590:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_2:12546478-12546497 | Msa0757590:CDS | 35.0% | |
| !! | TGTTACTTTAGCTCTACATG+TGG | + | chr5_2:12546971-12546990 | Msa0757590:intron | 35.0% |
| CAACACCTACAAACAATGTA+TGG | - | chr5_2:12547128-12547147 | None:intergenic | 35.0% | |
| !! | TTTGTAGGTGTTGAAGCTAA+CGG | + | chr5_2:12547135-12547154 | Msa0757590:intron | 35.0% |
| CCAAATTCACCAAGAAAAGT+AGG | - | chr5_2:12547274-12547293 | None:intergenic | 35.0% | |
| !! | CCTACTTTTCTTGGTGAATT+TGG | + | chr5_2:12547271-12547290 | Msa0757590:CDS | 35.0% |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_2:12547283-12547302 | Msa0757590:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_2:12547339-12547358 | Msa0757590:CDS | 35.0% | |
| ! | TATAATAGGGGTGAAGTGTT+GGG | - | chr5_2:12546000-12546019 | None:intergenic | 35.0% |
| TTATAATAGGGGTGAAGTGT+TGG | - | chr5_2:12546001-12546020 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_2:12546037-12546056 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_2:12546038-12546057 | Msa0757590:five_prime_UTR | 35.0% | |
| ATTTGTGTGTATTCACAAGC+GGG | - | chr5_2:12546214-12546233 | None:intergenic | 35.0% | |
| GATTTGTGTGTATTCACAAG+CGG | - | chr5_2:12546215-12546234 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_2:12546365-12546384 | Msa0757590:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_2:12546478-12546497 | Msa0757590:CDS | 35.0% | |
| !! | TGTTACTTTAGCTCTACATG+TGG | + | chr5_2:12546971-12546990 | Msa0757590:intron | 35.0% |
| CAACACCTACAAACAATGTA+TGG | - | chr5_2:12547128-12547147 | None:intergenic | 35.0% | |
| !! | TTTGTAGGTGTTGAAGCTAA+CGG | + | chr5_2:12547135-12547154 | Msa0757590:intron | 35.0% |
| CCAAATTCACCAAGAAAAGT+AGG | - | chr5_2:12547274-12547293 | None:intergenic | 35.0% | |
| !! | CCTACTTTTCTTGGTGAATT+TGG | + | chr5_2:12547271-12547290 | Msa0757590:CDS | 35.0% |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_2:12547283-12547302 | Msa0757590:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_2:12547339-12547358 | Msa0757590:CDS | 35.0% | |
| TTTGTGTGTATTCACAAGCG+GGG | - | chr5_2:12546213-12546232 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_2:12546368-12546387 | Msa0757590:CDS | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_2:12546483-12546502 | Msa0757590:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_2:12546533-12546552 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_2:12546544-12546563 | Msa0757590:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_2:12546652-12546671 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_2:12546660-12546679 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_2:12546902-12546921 | Msa0757590:intron | 40.0% | |
| ! | CTGCTTGTTACCCTTTCAAT+TGG | - | chr5_2:12547205-12547224 | None:intergenic | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_2:12547344-12547363 | Msa0757590:CDS | 40.0% | |
| TTTGTGTGTATTCACAAGCG+GGG | - | chr5_2:12546213-12546232 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_2:12546368-12546387 | Msa0757590:CDS | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_2:12546483-12546502 | Msa0757590:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_2:12546533-12546552 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_2:12546544-12546563 | Msa0757590:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_2:12546652-12546671 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_2:12546660-12546679 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_2:12546902-12546921 | Msa0757590:intron | 40.0% | |
| ! | CTGCTTGTTACCCTTTCAAT+TGG | - | chr5_2:12547205-12547224 | None:intergenic | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_2:12547344-12547363 | Msa0757590:CDS | 40.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_2:12546359-12546378 | None:intergenic | 45.0% | |
| AAAGGTGGAGAAAACAGTGC+TGG | + | chr5_2:12546383-12546402 | Msa0757590:CDS | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_2:12546493-12546512 | Msa0757590:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_2:12546528-12546547 | Msa0757590:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_2:12546534-12546553 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_2:12546543-12546562 | Msa0757590:CDS | 45.0% |
| AAGGAGACACTTCTCGAGTA+TGG | - | chr5_2:12546633-12546652 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_2:12546640-12546659 | Msa0757590:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_2:12546905-12546924 | Msa0757590:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_2:12546911-12546930 | None:intergenic | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_2:12547192-12547211 | Msa0757590:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_2:12547237-12547256 | Msa0757590:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_2:12547245-12547264 | None:intergenic | 45.0% |
| !! | GTTGTGGACCCTACTTTTCT+TGG | + | chr5_2:12547262-12547281 | Msa0757590:CDS | 45.0% |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_2:12546359-12546378 | None:intergenic | 45.0% | |
| AAAGGTGGAGAAAACAGTGC+TGG | + | chr5_2:12546383-12546402 | Msa0757590:CDS | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_2:12546493-12546512 | Msa0757590:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_2:12546528-12546547 | Msa0757590:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_2:12546534-12546553 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_2:12546543-12546562 | Msa0757590:CDS | 45.0% |
| AAGGAGACACTTCTCGAGTA+TGG | - | chr5_2:12546633-12546652 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_2:12546640-12546659 | Msa0757590:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_2:12546905-12546924 | Msa0757590:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_2:12546911-12546930 | None:intergenic | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_2:12547192-12547211 | Msa0757590:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_2:12547237-12547256 | Msa0757590:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_2:12547245-12547264 | None:intergenic | 45.0% |
| !! | GTTGTGGACCCTACTTTTCT+TGG | + | chr5_2:12547262-12547281 | Msa0757590:CDS | 45.0% |
| !!! | ATAGTTAATTATAATATTTT+TGG | + | chr5_2:12546303-12546322 | Msa0757590:intron | 5.0% |
| !! | AATAATAAATAATATAAAAG+AGG | - | chr5_2:12546680-12546699 | None:intergenic | 5.0% |
| !!! | ATAGTTAATTATAATATTTT+TGG | + | chr5_2:12546303-12546322 | Msa0757590:intron | 5.0% |
| !! | AATAATAAATAATATAAAAG+AGG | - | chr5_2:12546680-12546699 | None:intergenic | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_2:12546500-12546519 | Msa0757590:CDS | 50.0% | |
| GAGACACTTCTCGAGTATGG+TGG | - | chr5_2:12546630-12546649 | None:intergenic | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_2:12547191-12547210 | Msa0757590:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_2:12547246-12547265 | Msa0757590:CDS | 50.0% | |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_2:12546500-12546519 | Msa0757590:CDS | 50.0% | |
| GAGACACTTCTCGAGTATGG+TGG | - | chr5_2:12546630-12546649 | None:intergenic | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_2:12547191-12547210 | Msa0757590:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_2:12547246-12547265 | Msa0757590:CDS | 50.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_2:12546353-12546372 | None:intergenic | 55.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_2:12546549-12546568 | Msa0757590:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_2:12546552-12546571 | Msa0757590:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_2:12546556-12546575 | None:intergenic | 55.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_2:12546353-12546372 | None:intergenic | 55.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_2:12546549-12546568 | Msa0757590:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_2:12546552-12546571 | Msa0757590:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_2:12546556-12546575 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12545999 | 12547451 | 12545999 | ID=Msa0757590;Name=Msa0757590 |
| chr5_2 | mRNA | 12545999 | 12547451 | 12545999 | ID=Msa0757590-mRNA-1;Parent=Msa0757590;Name=Msa0757590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|3|67|214 |
| chr5_2 | exon | 12545999 | 12546247 | 12545999 | ID=Msa0757590-mRNA-1:exon:5570;Parent=Msa0757590-mRNA-1 |
| chr5_2 | exon | 12546339 | 12546661 | 12546339 | ID=Msa0757590-mRNA-1:exon:5571;Parent=Msa0757590-mRNA-1 |
| chr5_2 | exon | 12547142 | 12547451 | 12547142 | ID=Msa0757590-mRNA-1:exon:5572;Parent=Msa0757590-mRNA-1 |
| chr5_2 | five_prime_UTR | 12545999 | 12546168 | 12545999 | ID=Msa0757590-mRNA-1:five_prime_utr;Parent=Msa0757590-mRNA-1 |
| chr5_2 | CDS | 12546169 | 12546247 | 12546169 | ID=Msa0757590-mRNA-1:cds;Parent=Msa0757590-mRNA-1 |
| chr5_2 | CDS | 12546339 | 12546661 | 12546339 | ID=Msa0757590-mRNA-1:cds;Parent=Msa0757590-mRNA-1 |
| chr5_2 | CDS | 12547142 | 12547384 | 12547142 | ID=Msa0757590-mRNA-1:cds;Parent=Msa0757590-mRNA-1 |
| chr5_2 | three_prime_UTR | 12547385 | 12547451 | 12547385 | ID=Msa0757590-mRNA-1:three_prime_utr;Parent=Msa0757590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
