AlfalfaGEDB | Msa0717130

M. sativa cultivar zhongmu-4 / Msa0717130

KEGG: K21630
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717130	XP_003612107.1	91.327	392	20	5	1	380	1	390	0.0	617

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717130	sp\|Q9FH57\|GATA5_ARATH	43.895	344	167	6	56	380	3	339	2.01e-70	227

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717130	G7KGC3	91.327	392	20	5	1	380	1	390	0.0	617

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TFs/TRs:

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Gene ID	Type	Classification
Msa0717130	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0717130	Msa0837800	0.811473	6.878670e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717130	MtrunA17_Chr5g0404981	91.327	392	20	5	1	380	1	390	0.0	617
Msa0717130	MtrunA17_Chr8g0372291	50.000	326	112	9	52	362	1	290	7.22e-86	262
Msa0717130	MtrunA17_Chr4g0035891	40.401	349	128	10	55	380	5	296	9.16e-62	200
Msa0717130	MtrunA17_Chr3g0145121	40.373	322	137	10	55	361	5	286	3.55e-55	183
Msa0717130	MtrunA17_Chr3g0140331	38.966	290	130	8	85	360	67	323	8.74e-43	152
Msa0717130	MtrunA17_Chr1g0146231	43.612	227	97	7	144	360	99	304	1.20e-42	152
Msa0717130	MtrunA17_Chr8g0340401	41.810	232	83	6	142	359	102	295	1.15e-41	149
Msa0717130	MtrunA17_Chr1g0199671	38.306	248	104	9	148	356	71	308	1.04e-38	141
Msa0717130	MtrunA17_Chr1g0213161	41.150	226	104	6	150	358	9	222	1.47e-35	130
Msa0717130	MtrunA17_Chr7g0253101	41.284	218	100	6	155	354	45	252	4.39e-34	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717130	AT5G66320.2	43.895	344	167	6	56	380	3	339	2.04e-71	227
Msa0717130	AT5G66320.1	43.895	344	167	6	56	380	3	339	2.04e-71	227
Msa0717130	AT3G51080.1	48.538	342	133	14	52	380	1	312	1.61e-67	216
Msa0717130	AT4G36240.1	44.404	277	91	9	89	357	10	231	2.19e-54	179
Msa0717130	AT4G32890.1	36.972	284	134	9	88	359	16	266	1.01e-45	159
Msa0717130	AT5G25830.1	38.947	285	151	9	89	359	13	288	1.46e-45	159
Msa0717130	AT4G34680.1	38.487	304	122	8	58	359	9	249	5.80e-41	145
Msa0717130	AT4G34680.2	38.487	304	122	8	58	359	9	249	5.80e-41	145
Msa0717130	AT3G60530.1	42.396	217	71	6	142	358	64	226	3.60e-39	140
Msa0717130	AT2G45050.1	40.254	236	70	8	143	360	67	249	1.06e-38	139

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Find 109 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTGCAATGCATG+TGG	0.576908	5_1:+10757340	Msa0717130:CDS
AAACACTTTGCAATGCATGT+GGG	0.595953	5_1:+10757341	Msa0717130:CDS
AAAGAGCCAGAACCGGAGTT+AGG	0.338637	5_1:+10757047	Msa0717130:CDS
AAATTGAAAGAGAAGAGGAT+AGG	0.565462	5_1:-10756177	None:intergenic
AACACTTTGCAATGCATGTG+GGG	0.584364	5_1:+10757342	Msa0717130:CDS
AACCTACCGCACTCAATACA+AGG	0.543060	5_1:-10757683	None:intergenic
AACTAGGAACAACCGGAGAA+CGG	0.545023	5_1:-10757525	None:intergenic
AACTCGGGTCCCATTGAACC+GGG	0.583930	5_1:-10757640	None:intergenic
AACTGGTATGTCCCGTTCTC+CGG	0.445008	5_1:+10757513	Msa0717130:CDS
AAGAAAATACCTTCTTCTAA+CGG	0.532786	5_1:+10757214	Msa0717130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAAAGAGAAGAGGAT+AGG	-	chr5_1:10756180-10756199	None:intergenic	30.0%
AGTTATGTCTTTCCTTAAAC+TGG	-	chr5_1:10756443-10756462	None:intergenic	30.0%
ATGTTGGTGTAAATCAGTAA+GGG	-	chr5_1:10757157-10757176	None:intergenic	30.0%
AGAAAATACCTTCTTCTAAC+GGG	+	chr5_1:10757215-10757234	Msa0717130:CDS	30.0%
GCAATTCACTTGAAAATGTA+GGG	-	chr5_1:10757417-10757436	None:intergenic	30.0%
TGCAATTCACTTGAAAATGT+AGG	-	chr5_1:10757418-10757437	None:intergenic	30.0%
GTTGAAATTGAAGTTGAAAC+TGG	+	chr5_1:10757496-10757515	Msa0717130:CDS	30.0%
AATCAAAAACTAGGAACAAC+CGG	-	chr5_1:10757535-10757554	None:intergenic	30.0%
AAAAATGTGTACACTAACTC+GGG	-	chr5_1:10757658-10757677	None:intergenic	30.0%
AAATTGAAAGAGAAGAGGAT+AGG	-	chr5_1:10756180-10756199	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	10756106	10757753	10756106	ID=Msa0717130;Name=Msa0717130
chr5_1	mRNA	10756106	10757753	10756106	ID=Msa0717130-mRNA-1;Parent=Msa0717130;Name=Msa0717130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55\|1\|1\|1\|1\|1\|3\|201\|380
chr5_1	exon	10756106	10756298	10756106	ID=Msa0717130-mRNA-1:exon:4389;Parent=Msa0717130-mRNA-1
chr5_1	exon	10756397	10756702	10756397	ID=Msa0717130-mRNA-1:exon:4390;Parent=Msa0717130-mRNA-1
chr5_1	exon	10756854	10757753	10756854	ID=Msa0717130-mRNA-1:exon:4391;Parent=Msa0717130-mRNA-1
chr5_1	five_prime_UTR	10756106	10756160	10756106	ID=Msa0717130-mRNA-1:five_prime_utr;Parent=Msa0717130-mRNA-1
chr5_1	CDS	10756161	10756298	10756161	ID=Msa0717130-mRNA-1:cds;Parent=Msa0717130-mRNA-1
chr5_1	CDS	10756397	10756702	10756397	ID=Msa0717130-mRNA-1:cds;Parent=Msa0717130-mRNA-1
chr5_1	CDS	10756854	10757552	10756854	ID=Msa0717130-mRNA-1:cds;Parent=Msa0717130-mRNA-1
chr5_1	three_prime_UTR	10757553	10757753	10757553	ID=Msa0717130-mRNA-1:three_prime_utr;Parent=Msa0717130-mRNA-1

Gene Sequence

>Msa0717130

ATGCTTTACCAAACTTCCTATCCTCTTCTCTTTCAATTTCATCCTTTGCATTCTTCTTCCACCATTCCTCTCTCAACCATATCAGTTTCACCACAAAAACTTTCTCTCTTTTCTCATCTTCCTCATCCTCACTCACAGGCTTCAAAAACGGAAATGGAGTGCGTTGAAACAGCGTTGAAAACCAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAAATTTCAGTCCTCAATGCACAAAATGGAACAACTTCTGATGATTTTTTCGTTGACGACCTTCTTGACTTCTCTCACGTTGAAGAACAACACCAAGAAGAAGAACAAGAACACTCTCCTTGTCTCTCCCTCAAAGAAAACCATGAAACTTCAAACCCTAACACCACTCTCTCTCTCAAAGAAGATTATTCTTCTCTACCCACCAACGAACTCAACGTTCCGAGTGATGATGTAGCGGATTTGGAATGGCTTTCACATTTCGTTGAAGATACTGATTCCTTCTCTGGAATGGCTTTAACAACAACAACGGAGAAAAACCCTAAAAGCCTTGTTGTGTTTGAAGAACCCAAGCCGAAACAAGAAAACCCGGTTTTTACTACTTTCAAAACACCGGTTCAAACCAAAGCTAGAAGCAAAAGAGCCAGAACCGGAGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCAACCTCTTCATCTCCAACTAGTCCCTTACTGATTTACACCAACATGCTTCAAAGTTTTGACTCGGTTAAGGTAAAGAAACCGAAGAAAATACCTTCTTCTAACGGGTCGGGTCAAGGTGGTGCGCTGGTTATGGCGGCGCCACCGCGACGGTGCAGTCATTGTGGTGTAACAAAGACTCCTCAGTGGAGAAGTGGACCCCTTGGAGCAAAAACACTTTGCAATGCATGTGGGGTCCGTTTCAAATCGGGTCGGTTGTTACCCGAGTATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTGCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACTGGTATGTCCCGTTCTCCGGTTGTTCCTAGTTTTTGA

Protein sequence

>Msa0717130

MLYQTSYPLLFQFHPLHSSSTIPLSTISVSPQKLSLFSHLPHPHSQASKTEMECVETALKTSLRKDITPQTFVDEISVLNAQNGTTSDDFFVDDLLDFSHVEEQHQEEEQEHSPCLSLKENHETSNPNTTLSLKEDYSSLPTNELNVPSDDVADLEWLSHFVEDTDSFSGMALTTTTEKNPKSLVVFEEPKPKQENPVFTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLLIYTNMLQSFDSVKVKKPKKIPSSNGSGQGGALVMAAPPRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGMSRSPVVPSF*