AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837800 MtrunA17_Chr5g0404981 91.582 392 19 5 1 380 1 390 0.0 616
Msa0837800 MtrunA17_Chr8g0372291 50.000 326 112 9 52 362 1 290 1.74e-85 261
Msa0837800 MtrunA17_Chr4g0035891 40.401 349 128 10 55 380 5 296 7.01e-62 201
Msa0837800 MtrunA17_Chr3g0145121 40.373 322 137 10 55 361 5 286 3.91e-55 183
Msa0837800 MtrunA17_Chr1g0146231 43.612 227 97 7 144 360 99 304 1.42e-42 152
Msa0837800 MtrunA17_Chr3g0140331 39.175 291 128 9 85 360 67 323 2.81e-42 151
Msa0837800 MtrunA17_Chr8g0340401 41.810 232 83 6 142 359 102 295 1.31e-41 149
Msa0837800 MtrunA17_Chr1g0199671 38.306 248 104 9 148 356 71 308 9.70e-39 141
Msa0837800 MtrunA17_Chr1g0213161 41.150 226 104 6 150 358 9 222 1.57e-35 130
Msa0837800 MtrunA17_Chr7g0253101 41.284 218 100 6 155 354 45 252 4.82e-34 127
Msa0837800 MtrunA17_Chr6g0461591 36.820 239 95 8 155 354 35 256 1.02e-32 123
Msa0837800 MtrunA17_Chr1g0169431 71.233 73 21 0 290 362 172 244 1.86e-32 122
Msa0837800 MtrunA17_Chr4g0028961 68.421 76 22 1 289 362 231 306 3.02e-31 120
Msa0837800 MtrunA17_Chr2g0326771 57.447 94 40 0 261 354 187 280 7.64e-30 117
Msa0837800 MtrunA17_Chr5g0395391 67.123 73 24 0 290 362 270 342 1.62e-29 116
Msa0837800 MtrunA17_Chr5g0395391 68.750 64 20 0 290 353 168 231 9.71e-26 106
Msa0837800 MtrunA17_Chr7g0232671 46.341 82 44 0 270 351 167 248 1.60e-20 90.1
Msa0837800 MtrunA17_Chr7g0232701 54.839 62 28 0 290 351 73 134 2.38e-18 80.9
Msa0837800 MtrunA17_Chr7g0232681 53.226 62 29 0 290 351 132 193 7.33e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837800 AT5G66320.2 46.746 338 166 5 56 380 3 339 6.96e-72 228
Msa0837800 AT5G66320.1 46.746 338 166 5 56 380 3 339 6.96e-72 228
Msa0837800 AT3G51080.1 49.245 331 129 13 52 373 1 301 1.32e-67 216
Msa0837800 AT4G36240.1 44.404 277 91 9 89 357 10 231 2.49e-54 179
Msa0837800 AT4G32890.1 36.972 284 134 9 88 359 16 266 5.71e-46 160
Msa0837800 AT5G25830.1 38.947 285 151 9 89 359 13 288 1.84e-45 159
Msa0837800 AT4G34680.1 38.158 304 123 8 58 359 9 249 6.31e-41 145
Msa0837800 AT4G34680.2 38.158 304 123 8 58 359 9 249 6.31e-41 145
Msa0837800 AT3G60530.1 43.318 217 69 7 142 358 64 226 3.56e-39 140
Msa0837800 AT2G45050.1 40.254 236 70 8 143 360 67 249 9.83e-39 139
Msa0837800 AT3G24050.1 70.667 75 19 1 282 356 189 260 2.74e-33 125
Msa0837800 AT3G54810.1 74.286 70 18 0 288 357 227 296 1.19e-31 122
Msa0837800 AT3G54810.2 74.286 70 18 0 288 357 227 296 1.19e-31 122
Msa0837800 AT1G08010.2 72.464 69 19 0 290 358 220 288 4.03e-31 120
Msa0837800 AT1G08010.1 72.464 69 19 0 290 358 220 288 4.03e-31 120
Msa0837800 AT1G08010.3 72.464 69 19 0 290 358 220 288 4.03e-31 120
Msa0837800 AT1G08000.2 59.770 87 28 1 290 376 218 297 7.92e-29 114
Msa0837800 AT1G08000.1 59.770 87 28 1 290 376 218 297 7.92e-29 114
Msa0837800 AT3G45170.1 67.164 67 22 0 292 358 117 183 8.08e-29 111
Msa0837800 AT2G28340.1 66.154 65 22 0 292 356 193 257 2.68e-25 104
Msa0837800 AT2G18380.1 59.091 44 16 1 279 322 83 124 7.51e-11 61.6

Find 123 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGAATATTTAATGTATT+TGG 0.168582 5_4:-11863437 Msa0837800:three_prime_UTR
CAGCGTTGAAAACCAGTTTA+AGG 0.224198 5_4:-11864805 Msa0837800:CDS
AGTGTTCTTGTTCTTCTTCT+TGG 0.233910 5_4:+11864660 None:intergenic
TAAACATATAATTTAGTTTA+GGG 0.254113 5_4:-11865198 None:intergenic
AAGAAAAGAAAAGGTAAATT+AGG 0.257508 5_4:-11865168 Msa0837800:five_prime_UTR
GCCGCATTTCAAGCACTTTC+CGG 0.262078 5_4:+11863783 None:intergenic
TGTTAGGGTTTGAAGTTTCA+TGG 0.286423 5_4:+11864612 None:intergenic
ATAAACATATAATTTAGTTT+AGG 0.292815 5_4:-11865199 None:intergenic
TCAAGGTGGTGCGCTGGTTA+TGG 0.302812 5_4:-11863990 Msa0837800:CDS
TGCGGTAGGTTAGGTTAATT+AGG 0.304925 5_4:-11863540 Msa0837800:three_prime_UTR
TTGAGAGAGAGAGTGGTGTT+AGG 0.311796 5_4:+11864596 None:intergenic
AGAGAAGAGGATAGGAAGTT+TGG 0.315573 5_4:+11865064 None:intergenic
AGTTATGTCTTTCCTTAAAC+TGG 0.323165 5_4:+11864793 None:intergenic
GAGTGATGATGTAGCGGATT+TGG 0.332967 5_4:-11864380 Msa0837800:CDS
GGAGTTAGGGTTTGGCCATT+CGG 0.338619 5_4:-11864172 Msa0837800:CDS
AAAGAGCCAGAACCGGAGTT+AGG 0.338637 5_4:-11864186 Msa0837800:CDS
TCAGTCCTCAATGCACAAAA+TGG 0.339657 5_4:-11864746 Msa0837800:CDS
TGAGAGAGAGAGTGGTGTTA+GGG 0.347258 5_4:+11864597 None:intergenic
GTTGAAATTGAAGTTGAAAC+TGG 0.368767 5_4:-11863737 Msa0837800:CDS
CCAAACCCTAACTCCGGTTC+TGG 0.373049 5_4:+11864180 None:intergenic
CTTCTAGCTTTGGTTTGAAC+CGG 0.384987 5_4:+11864211 None:intergenic
GAAGATACTGATTCCTTCTC+TGG 0.390652 5_4:-11864337 Msa0837800:CDS
GAGTTAGGGTTTGGCCATTC+GGG 0.398916 5_4:-11864171 Msa0837800:CDS
ACTAGGAACAACCGGAGAAC+GGG 0.415441 5_4:+11863709 None:intergenic
TGTATTGAGTGCGGTAGGTT+AGG 0.418208 5_4:-11863549 Msa0837800:three_prime_UTR
AACTGGTTTGTCCCGTTCTC+CGG 0.421240 5_4:-11863720 Msa0837800:CDS
CCAGAACCGGAGTTAGGGTT+TGG 0.426023 5_4:-11864180 Msa0837800:CDS
TAACTCGGGTCCCATTGAAC+CGG 0.428789 5_4:+11863594 None:intergenic
ATGTGGGGTCCGTTTCAAAT+CGG 0.430277 5_4:-11863876 Msa0837800:CDS
AGTTTCATGGTTTACTTTGA+GGG 0.431094 5_4:+11864625 None:intergenic
AAGTTTCATGGTTTACTTTG+AGG 0.431398 5_4:+11864624 None:intergenic
TTTCAAGCACTTTCCGGTGG+TGG 0.445128 5_4:+11863789 None:intergenic
CATGTTGGTGTAAATCAGTA+AGG 0.448804 5_4:+11864078 None:intergenic
TGTGGGGTCCGTTTCAAATC+GGG 0.450070 5_4:-11863875 Msa0837800:CDS
GGATAGAGAAAGAAAAGAAA+AGG 0.454269 5_4:-11865177 Msa0837800:five_prime_UTR
AGAAAATACCTTCTTCTAAC+GGG 0.463060 5_4:-11864018 Msa0837800:CDS
AAGAAAAGGTAAATTAGGAG+TGG 0.464774 5_4:-11865163 Msa0837800:five_prime_UTR
AGAAGCAAAAGAGCCAGAAC+CGG 0.467532 5_4:-11864193 Msa0837800:CDS
TTATAGTAATAATAAATCCT+TGG 0.467588 5_4:-11865115 Msa0837800:five_prime_UTR
ATTTCATCAACAAATGTTTG+AGG 0.469386 5_4:+11864770 None:intergenic
TTTGGTAAAGCATTGAATGA+AGG 0.471624 5_4:+11865082 None:intergenic
CGGAACGTTGAGTTCGTTGG+TGG 0.479405 5_4:+11864553 None:intergenic
GGGAAGAGAGAGAAAGAAAC+GGG 0.479630 5_4:-11865142 Msa0837800:five_prime_UTR
TAAATCAGTAAGGGACTAGT+TGG 0.479787 5_4:+11864088 None:intergenic
GTCGGGTCAAGGTGGTGCGC+TGG 0.483548 5_4:-11863996 Msa0837800:CDS
CAGTGGAGAAGTGGACCCCT+TGG 0.483789 5_4:-11863920 Msa0837800:CDS
CGGCGGAAGAAGGAGGTTGT+TGG 0.485331 5_4:-11863764 Msa0837800:CDS
TACTGATTCCTTCTCTGGAA+TGG 0.486449 5_4:-11864332 Msa0837800:CDS
GGGACTAGTTGGAGATGAAG+AGG 0.488850 5_4:+11864099 None:intergenic
TCTTCTAACGGGTCGGGTCA+AGG 0.492580 5_4:-11864007 Msa0837800:CDS
TACCGGAACGTTGAGTTCGT+TGG 0.498859 5_4:+11864550 None:intergenic
TTGGTAAAGCATTGAATGAA+GGG 0.499651 5_4:+11865083 None:intergenic
TTAATTTCATATACTCCCTC+CGG 0.499923 5_4:-11863494 Msa0837800:three_prime_UTR
TTATGGCGGCGCCACCGCGA+CGG 0.501029 5_4:-11863973 Msa0837800:CDS
CTACAAGCGGGTCGATACTC+GGG 0.501909 5_4:+11863842 None:intergenic
GCTACAAGCGGGTCGATACT+CGG 0.502192 5_4:+11863841 None:intergenic
AAGAGCCAGAACCGGAGTTA+GGG 0.503861 5_4:-11864185 Msa0837800:CDS
TGGGAAGAGAGAGAAAGAAA+CGG 0.507106 5_4:-11865143 Msa0837800:five_prime_UTR
GCTTGAAATGCGGCGGAAGA+AGG 0.509175 5_4:-11863774 Msa0837800:CDS
ATACCTTCTTCTAACGGGTC+GGG 0.512415 5_4:-11864013 Msa0837800:CDS
TGTTAAAGCCATTCCAGAGA+AGG 0.512505 5_4:+11864324 None:intergenic
TGCAATTCACTTGAAAATGT+AGG 0.512664 5_4:+11863818 None:intergenic
GCAATTCACTTGAAAATGTA+GGG 0.516502 5_4:+11863819 None:intergenic
CACCAACGAACTCAACGTTC+CGG 0.517043 5_4:-11864552 Msa0837800:intron
AAGAAAATACCTTCTTCTAA+CGG 0.532786 5_4:-11864019 Msa0837800:CDS
CGGAAGAAGGAGGTTGTTGG+TGG 0.534340 5_4:-11863761 Msa0837800:CDS
TGAAGATGAAGTTGTGGTGG+TGG 0.540481 5_4:+11864123 None:intergenic
AACCTACCGCACTCAATACA+AGG 0.543060 5_4:+11863552 None:intergenic
AACTAGGAACAACCGGAGAA+CGG 0.545023 5_4:+11863708 None:intergenic
GTCAAAACTTTGAAGCATGT+TGG 0.552102 5_4:+11864063 None:intergenic
ACAACCGACCCGATTTGAAA+CGG 0.552857 5_4:+11863867 None:intergenic
AAGACTCCTCAGTGGAGAAG+TGG 0.555433 5_4:-11863929 Msa0837800:CDS
AATACCTGTGAGTGAGGATG+AGG 0.559728 5_4:+11864952 None:intergenic
AGAAAAGGTAAATTAGGAGT+GGG 0.561210 5_4:-11865162 Msa0837800:five_prime_UTR
AATACCTTCTTCTAACGGGT+CGG 0.563299 5_4:-11864014 Msa0837800:CDS
AAATTGAAAGAGAAGAGGAT+AGG 0.565462 5_4:+11865056 None:intergenic
TGAAAATGTAGGGCTACAAG+CGG 0.567317 5_4:+11863829 None:intergenic
GGTTGAGCTTGAAGAAGAAT+CGG 0.569217 5_4:+11864144 None:intergenic
AGGTGGTGCGCTGGTTATGG+CGG 0.571286 5_4:-11863987 Msa0837800:CDS
GGATGAAATTGAAAGAGAAG+AGG 0.572683 5_4:+11865051 None:intergenic
TTCCTTGTATTGAGTGCGGT+AGG 0.572932 5_4:-11863554 Msa0837800:three_prime_UTR
TATGGTTGAGAGAGGAATGG+TGG 0.573956 5_4:+11865014 None:intergenic
AAAACACTTTGCAATGCATG+TGG 0.576908 5_4:-11863893 Msa0837800:CDS
ATCTTCTTTGAGAGAGAGAG+TGG 0.577619 5_4:+11864589 None:intergenic
ATGAAGGGTGAAAGCGTCCA+AGG 0.577956 5_4:+11865098 None:intergenic
TGACCCGACCCGTTAGAAGA+AGG 0.580832 5_4:+11864010 None:intergenic
TCTTCCTCATCCTCACTCAC+AGG 0.581283 5_4:-11864956 Msa0837800:intron
GAAGAATCGGTTGACCCGAA+TGG 0.581552 5_4:+11864157 None:intergenic
AACTCGGGTCCCATTGAACC+GGG 0.583930 5_4:+11863595 None:intergenic
AACACTTTGCAATGCATGTG+GGG 0.584364 5_4:-11863891 Msa0837800:CDS
AGTAATAATACCTGTGAGTG+AGG 0.585394 5_4:+11864946 None:intergenic
TGCTTATAAATGTGACCGGA+GGG 0.590466 5_4:+11863479 None:intergenic
AAACACTTTGCAATGCATGT+GGG 0.595953 5_4:-11863892 Msa0837800:CDS
TGGGTTCTTCAAACACAACA+AGG 0.596693 5_4:+11864275 None:intergenic
CCGCGACGGTGCAGTCATTG+TGG 0.597226 5_4:-11863959 Msa0837800:CDS
GGAACGTTGAGTTCGTTGGT+GGG 0.602465 5_4:+11864554 None:intergenic
AATTGCACTCAAACCACCAC+CGG 0.603688 5_4:-11863802 Msa0837800:CDS
ACCGGAAAGTGCTTGAAATG+CGG 0.610851 5_4:-11863784 Msa0837800:CDS
CAATGACTGCACCGTCGCGG+TGG 0.613617 5_4:+11863962 None:intergenic
GAAAATGTAGGGCTACAAGC+GGG 0.617357 5_4:+11863830 None:intergenic
CAAGCCGAAACAAGAAAACC+CGG 0.618171 5_4:-11864254 Msa0837800:CDS
TGAAATGCGGCGGAAGAAGG+AGG 0.618269 5_4:-11863771 Msa0837800:CDS
ATGATGTAGCGGATTTGGAA+TGG 0.620800 5_4:-11864375 Msa0837800:CDS
TTTCTTCCTTGTATTGAGTG+CGG 0.621569 5_4:-11863558 Msa0837800:three_prime_UTR
TGTACAGAGTGATGATGTAG+CGG 0.627905 5_4:-11864386 Msa0837800:intron
TTGCTTATAAATGTGACCGG+AGG 0.629710 5_4:+11863478 None:intergenic
GGGTCCGTTTCAAATCGGGT+CGG 0.636088 5_4:-11863871 Msa0837800:CDS
GCATTTCAAGCACTTTCCGG+TGG 0.641487 5_4:+11863786 None:intergenic
ATGTTGGTGTAAATCAGTAA+GGG 0.645408 5_4:+11864079 None:intergenic
TTTACTTTGAGGGAGAGACA+AGG 0.648051 5_4:+11864635 None:intergenic
CAACGTGAGAGAAGTCAAGA+AGG 0.648494 5_4:+11864693 None:intergenic
TGATATGGTTGAGAGAGGAA+TGG 0.652477 5_4:+11865011 None:intergenic
GAAACTGATATGGTTGAGAG+AGG 0.655208 5_4:+11865006 None:intergenic
GAATGGCCAAACCCTAACTC+CGG 0.661642 5_4:+11864174 None:intergenic
GGAAAGTGCTTGAAATGCGG+CGG 0.671374 5_4:-11863781 Msa0837800:CDS
CCACAATGACTGCACCGTCG+CGG 0.674443 5_4:+11863959 None:intergenic
GGTTGAAGATGAAGTTGTGG+TGG 0.679785 5_4:+11864120 None:intergenic
AGAGGTTGAAGATGAAGTTG+TGG 0.694243 5_4:+11864117 None:intergenic
AATGGCTTTAACAACAACAA+CGG 0.712114 5_4:-11864314 Msa0837800:CDS
TCTAACGGGTCGGGTCAAGG+TGG 0.717376 5_4:-11864004 Msa0837800:CDS
GTGTAACAAAGACTCCTCAG+TGG 0.731260 5_4:-11863937 Msa0837800:CDS
ATGGTGGAAGAAGAATGCAA+AGG 0.739289 5_4:+11865030 None:intergenic
AGGGGTCCACTTCTCCACTG+AGG 0.747563 5_4:+11863923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAAAAATTTGTTAC+CGG + chr5_4:11864043-11864062 None:intergenic 10.0%
!! ATAATAATTAATCAAAAACT+AGG + chr5_4:11864884-11864903 None:intergenic 10.0%
!!! AAAAATAAAAAATTTGTTAC+CGG + chr5_4:11864043-11864062 None:intergenic 10.0%
!! ATAATAATTAATCAAAAACT+AGG + chr5_4:11864884-11864903 None:intergenic 10.0%
!! TTATAGTAATAATAAATCCT+TGG - chr5_4:11863458-11863477 Msa0837800:three_prime_UTR 15.0%
!! AGGTTTATAATAAATATTGT+CGG + chr5_4:11864077-11864096 None:intergenic 15.0%
!!! AAAAAAAATGTTTTTTGTGT+TGG - chr5_4:11864138-11864157 Msa0837800:CDS 15.0%
!!! AAAAAAATGTTTTTTGTGTT+GGG - chr5_4:11864139-11864158 Msa0837800:CDS 15.0%
!! TTAAATTTATGAAGAAAAAG+AGG - chr5_4:11864912-11864931 Msa0837800:intron 15.0%
!! AGAAAAAAATTAGATAGAAA+TGG - chr5_4:11864939-11864958 Msa0837800:intron 15.0%
!! CATTGAATATTTAATGTATT+TGG - chr5_4:11865136-11865155 Msa0837800:five_prime_UTR 15.0%
!! TTATAGTAATAATAAATCCT+TGG - chr5_4:11863458-11863477 Msa0837800:three_prime_UTR 15.0%
!! AGGTTTATAATAAATATTGT+CGG + chr5_4:11864077-11864096 None:intergenic 15.0%
!!! AAAAAAAATGTTTTTTGTGT+TGG - chr5_4:11864138-11864157 Msa0837800:CDS 15.0%
!!! AAAAAAATGTTTTTTGTGTT+GGG - chr5_4:11864139-11864158 Msa0837800:CDS 15.0%
!! TTAAATTTATGAAGAAAAAG+AGG - chr5_4:11864912-11864931 Msa0837800:intron 15.0%
!! AGAAAAAAATTAGATAGAAA+TGG - chr5_4:11864939-11864958 Msa0837800:intron 15.0%
!! CATTGAATATTTAATGTATT+TGG - chr5_4:11865136-11865155 Msa0837800:five_prime_UTR 15.0%
!! AAGAAAAGAAAAGGTAAATT+AGG - chr5_4:11863405-11863424 Msa0837800:three_prime_UTR 20.0%
!!! TTGTTTTGTTTTGTTTTGTT+AGG - chr5_4:11863715-11863734 Msa0837800:CDS 20.0%
!!! ACATAGTTTCGATTTTTTTA+AGG + chr5_4:11864097-11864116 None:intergenic 20.0%
!! ATTCAATGAATCTAAAAAAG+TGG + chr5_4:11865124-11865143 None:intergenic 20.0%
!! AAGAAAAGAAAAGGTAAATT+AGG - chr5_4:11863405-11863424 Msa0837800:three_prime_UTR 20.0%
!!! TTGTTTTGTTTTGTTTTGTT+AGG - chr5_4:11863715-11863734 Msa0837800:CDS 20.0%
!!! ACATAGTTTCGATTTTTTTA+AGG + chr5_4:11864097-11864116 None:intergenic 20.0%
!! ATTCAATGAATCTAAAAAAG+TGG + chr5_4:11865124-11865143 None:intergenic 20.0%
! ATTTCATCAACAAATGTTTG+AGG + chr5_4:11863806-11863825 None:intergenic 25.0%
!!! TTTTGAAAGTAGTAAAAACC+GGG + chr5_4:11864340-11864359 None:intergenic 25.0%
!!! GTTTTGAAAGTAGTAAAAAC+CGG + chr5_4:11864341-11864360 None:intergenic 25.0%
!! TTTTACTACTTTCAAAACAC+CGG - chr5_4:11864343-11864362 Msa0837800:CDS 25.0%
!!! TTAGAAGAAGGTATTTTCTT+CGG + chr5_4:11864554-11864573 None:intergenic 25.0%
! AAGAAAATACCTTCTTCTAA+CGG - chr5_4:11864554-11864573 Msa0837800:CDS 25.0%
! AAAAAATGTGTACACTAACT+CGG + chr5_4:11864997-11865016 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr5_4:11865101-11865120 None:intergenic 25.0%
! ATTTCATCAACAAATGTTTG+AGG + chr5_4:11863806-11863825 None:intergenic 25.0%
!!! TTTTGAAAGTAGTAAAAACC+GGG + chr5_4:11864340-11864359 None:intergenic 25.0%
!!! GTTTTGAAAGTAGTAAAAAC+CGG + chr5_4:11864341-11864360 None:intergenic 25.0%
!! TTTTACTACTTTCAAAACAC+CGG - chr5_4:11864343-11864362 Msa0837800:CDS 25.0%
!!! TTAGAAGAAGGTATTTTCTT+CGG + chr5_4:11864554-11864573 None:intergenic 25.0%
! AAGAAAATACCTTCTTCTAA+CGG - chr5_4:11864554-11864573 Msa0837800:CDS 25.0%
! AAAAAATGTGTACACTAACT+CGG + chr5_4:11864997-11865016 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr5_4:11865101-11865120 None:intergenic 25.0%
GGATAGAGAAAGAAAAGAAA+AGG - chr5_4:11863396-11863415 Msa0837800:three_prime_UTR 30.0%
AAGAAAAGGTAAATTAGGAG+TGG - chr5_4:11863410-11863429 Msa0837800:three_prime_UTR 30.0%
AGAAAAGGTAAATTAGGAGT+GGG - chr5_4:11863411-11863430 Msa0837800:three_prime_UTR 30.0%
!! TTGGTAAAGCATTGAATGAA+GGG + chr5_4:11863493-11863512 None:intergenic 30.0%
!! TTTGGTAAAGCATTGAATGA+AGG + chr5_4:11863494-11863513 None:intergenic 30.0%
AAATTGAAAGAGAAGAGGAT+AGG + chr5_4:11863520-11863539 None:intergenic 30.0%
! TTTTTGTGGTGAAACTGATA+TGG + chr5_4:11863580-11863599 None:intergenic 30.0%
! GAAAAGAGAGAAAGTTTTTG+TGG + chr5_4:11863594-11863613 None:intergenic 30.0%
!! GTTTTGTTAGGCTTCAAAAA+CGG - chr5_4:11863727-11863746 Msa0837800:CDS 30.0%
AGTTATGTCTTTCCTTAAAC+TGG + chr5_4:11863783-11863802 None:intergenic 30.0%
AGTTTCATGGTTTACTTTGA+GGG + chr5_4:11863951-11863970 None:intergenic 30.0%
AAGTTTCATGGTTTACTTTG+AGG + chr5_4:11863952-11863971 None:intergenic 30.0%
!! AATGGCTTTAACAACAACAA+CGG - chr5_4:11864259-11864278 Msa0837800:CDS 30.0%
ATGTTGGTGTAAATCAGTAA+GGG + chr5_4:11864497-11864516 None:intergenic 30.0%
AGAAAATACCTTCTTCTAAC+GGG - chr5_4:11864555-11864574 Msa0837800:CDS 30.0%
GCAATTCACTTGAAAATGTA+GGG + chr5_4:11864757-11864776 None:intergenic 30.0%
TGCAATTCACTTGAAAATGT+AGG + chr5_4:11864758-11864777 None:intergenic 30.0%
GTTGAAATTGAAGTTGAAAC+TGG - chr5_4:11864836-11864855 Msa0837800:CDS 30.0%
AATCAAAAACTAGGAACAAC+CGG + chr5_4:11864875-11864894 None:intergenic 30.0%
AAAAATGTGTACACTAACTC+GGG + chr5_4:11864996-11865015 None:intergenic 30.0%
! TTAGGCTTTTGTAACTGTTT+AGG - chr5_4:11865051-11865070 Msa0837800:CDS 30.0%
TTAATTTCATATACTCCCTC+CGG - chr5_4:11865079-11865098 Msa0837800:exon 30.0%
GGATAGAGAAAGAAAAGAAA+AGG - chr5_4:11863396-11863415 Msa0837800:three_prime_UTR 30.0%
AAGAAAAGGTAAATTAGGAG+TGG - chr5_4:11863410-11863429 Msa0837800:three_prime_UTR 30.0%
AGAAAAGGTAAATTAGGAGT+GGG - chr5_4:11863411-11863430 Msa0837800:three_prime_UTR 30.0%
!! TTGGTAAAGCATTGAATGAA+GGG + chr5_4:11863493-11863512 None:intergenic 30.0%
!! TTTGGTAAAGCATTGAATGA+AGG + chr5_4:11863494-11863513 None:intergenic 30.0%
AAATTGAAAGAGAAGAGGAT+AGG + chr5_4:11863520-11863539 None:intergenic 30.0%
! TTTTTGTGGTGAAACTGATA+TGG + chr5_4:11863580-11863599 None:intergenic 30.0%
! GAAAAGAGAGAAAGTTTTTG+TGG + chr5_4:11863594-11863613 None:intergenic 30.0%
!! GTTTTGTTAGGCTTCAAAAA+CGG - chr5_4:11863727-11863746 Msa0837800:CDS 30.0%
AGTTATGTCTTTCCTTAAAC+TGG + chr5_4:11863783-11863802 None:intergenic 30.0%
AGTTTCATGGTTTACTTTGA+GGG + chr5_4:11863951-11863970 None:intergenic 30.0%
AAGTTTCATGGTTTACTTTG+AGG + chr5_4:11863952-11863971 None:intergenic 30.0%
!! AATGGCTTTAACAACAACAA+CGG - chr5_4:11864259-11864278 Msa0837800:CDS 30.0%
ATGTTGGTGTAAATCAGTAA+GGG + chr5_4:11864497-11864516 None:intergenic 30.0%
AGAAAATACCTTCTTCTAAC+GGG - chr5_4:11864555-11864574 Msa0837800:CDS 30.0%
GCAATTCACTTGAAAATGTA+GGG + chr5_4:11864757-11864776 None:intergenic 30.0%
TGCAATTCACTTGAAAATGT+AGG + chr5_4:11864758-11864777 None:intergenic 30.0%
GTTGAAATTGAAGTTGAAAC+TGG - chr5_4:11864836-11864855 Msa0837800:CDS 30.0%
AATCAAAAACTAGGAACAAC+CGG + chr5_4:11864875-11864894 None:intergenic 30.0%
AAAAATGTGTACACTAACTC+GGG + chr5_4:11864996-11865015 None:intergenic 30.0%
! TTAGGCTTTTGTAACTGTTT+AGG - chr5_4:11865051-11865070 Msa0837800:CDS 30.0%
TTAATTTCATATACTCCCTC+CGG - chr5_4:11865079-11865098 Msa0837800:exon 30.0%
GGATGAAATTGAAAGAGAAG+AGG + chr5_4:11863525-11863544 None:intergenic 35.0%
AGTAATAATACCTGTGAGTG+AGG + chr5_4:11863630-11863649 None:intergenic 35.0%
TTAGGCTTCAAAAACGGAAA+TGG - chr5_4:11863733-11863752 Msa0837800:CDS 35.0%
! TTGTTCCATTTTGTGCATTG+AGG + chr5_4:11863835-11863854 None:intergenic 35.0%
AGTGTTCTTGTTCTTCTTCT+TGG + chr5_4:11863916-11863935 None:intergenic 35.0%
! TGTTAGGGTTTGAAGTTTCA+TGG + chr5_4:11863964-11863983 None:intergenic 35.0%
! CAAACACAACAAGGCTTTTA+GGG + chr5_4:11864292-11864311 None:intergenic 35.0%
! TCAAACACAACAAGGCTTTT+AGG + chr5_4:11864293-11864312 None:intergenic 35.0%
!! AAAACCGGGTTTTCTTGTTT+CGG + chr5_4:11864326-11864345 None:intergenic 35.0%
! TAAATCAGTAAGGGACTAGT+TGG + chr5_4:11864488-11864507 None:intergenic 35.0%
CATGTTGGTGTAAATCAGTA+AGG + chr5_4:11864498-11864517 None:intergenic 35.0%
!! GTCAAAACTTTGAAGCATGT+TGG + chr5_4:11864513-11864532 None:intergenic 35.0%
!!! CATGCTTCAAAGTTTTGACT+CGG - chr5_4:11864514-11864533 Msa0837800:intron 35.0%
!!! TCAAAGTTTTGACTCGGTTA+AGG - chr5_4:11864520-11864539 Msa0837800:intron 35.0%
AAAACACTTTGCAATGCATG+TGG - chr5_4:11864680-11864699 Msa0837800:CDS 35.0%
AAACACTTTGCAATGCATGT+GGG - chr5_4:11864681-11864700 Msa0837800:CDS 35.0%
TTTCTTCCTTGTATTGAGTG+CGG - chr5_4:11865015-11865034 Msa0837800:CDS 35.0%
GGATGAAATTGAAAGAGAAG+AGG + chr5_4:11863525-11863544 None:intergenic 35.0%
AGTAATAATACCTGTGAGTG+AGG + chr5_4:11863630-11863649 None:intergenic 35.0%
TTAGGCTTCAAAAACGGAAA+TGG - chr5_4:11863733-11863752 Msa0837800:CDS 35.0%
! TTGTTCCATTTTGTGCATTG+AGG + chr5_4:11863835-11863854 None:intergenic 35.0%
AGTGTTCTTGTTCTTCTTCT+TGG + chr5_4:11863916-11863935 None:intergenic 35.0%
! TGTTAGGGTTTGAAGTTTCA+TGG + chr5_4:11863964-11863983 None:intergenic 35.0%
! CAAACACAACAAGGCTTTTA+GGG + chr5_4:11864292-11864311 None:intergenic 35.0%
! TCAAACACAACAAGGCTTTT+AGG + chr5_4:11864293-11864312 None:intergenic 35.0%
!! AAAACCGGGTTTTCTTGTTT+CGG + chr5_4:11864326-11864345 None:intergenic 35.0%
! TAAATCAGTAAGGGACTAGT+TGG + chr5_4:11864488-11864507 None:intergenic 35.0%
CATGTTGGTGTAAATCAGTA+AGG + chr5_4:11864498-11864517 None:intergenic 35.0%
!! GTCAAAACTTTGAAGCATGT+TGG + chr5_4:11864513-11864532 None:intergenic 35.0%
!!! CATGCTTCAAAGTTTTGACT+CGG - chr5_4:11864514-11864533 Msa0837800:intron 35.0%
!!! TCAAAGTTTTGACTCGGTTA+AGG - chr5_4:11864520-11864539 Msa0837800:intron 35.0%
AAAACACTTTGCAATGCATG+TGG - chr5_4:11864680-11864699 Msa0837800:CDS 35.0%
AAACACTTTGCAATGCATGT+GGG - chr5_4:11864681-11864700 Msa0837800:CDS 35.0%
TTTCTTCCTTGTATTGAGTG+CGG - chr5_4:11865015-11865034 Msa0837800:CDS 35.0%
TGGGAAGAGAGAGAAAGAAA+CGG - chr5_4:11863430-11863449 Msa0837800:three_prime_UTR 40.0%
AGAGAAGAGGATAGGAAGTT+TGG + chr5_4:11863512-11863531 None:intergenic 40.0%
! ATGGTGGAAGAAGAATGCAA+AGG + chr5_4:11863546-11863565 None:intergenic 40.0%
TGATATGGTTGAGAGAGGAA+TGG + chr5_4:11863565-11863584 None:intergenic 40.0%
GAAACTGATATGGTTGAGAG+AGG + chr5_4:11863570-11863589 None:intergenic 40.0%
! CAGCGTTGAAAACCAGTTTA+AGG - chr5_4:11863768-11863787 Msa0837800:CDS 40.0%
TCAGTCCTCAATGCACAAAA+TGG - chr5_4:11863827-11863846 Msa0837800:CDS 40.0%
! TTTACTTTGAGGGAGAGACA+AGG + chr5_4:11863941-11863960 None:intergenic 40.0%
! ATCTTCTTTGAGAGAGAGAG+TGG + chr5_4:11863987-11864006 None:intergenic 40.0%
! TGTACAGAGTGATGATGTAG+CGG - chr5_4:11864187-11864206 Msa0837800:CDS 40.0%
!! ATGATGTAGCGGATTTGGAA+TGG - chr5_4:11864198-11864217 Msa0837800:CDS 40.0%
!! GAAGATACTGATTCCTTCTC+TGG - chr5_4:11864236-11864255 Msa0837800:CDS 40.0%
!! TACTGATTCCTTCTCTGGAA+TGG - chr5_4:11864241-11864260 Msa0837800:CDS 40.0%
TGTTAAAGCCATTCCAGAGA+AGG + chr5_4:11864252-11864271 None:intergenic 40.0%
TGGGTTCTTCAAACACAACA+AGG + chr5_4:11864301-11864320 None:intergenic 40.0%
!! CTTCTAGCTTTGGTTTGAAC+CGG + chr5_4:11864365-11864384 None:intergenic 40.0%
GGTTGAGCTTGAAGAAGAAT+CGG + chr5_4:11864432-11864451 None:intergenic 40.0%
AGAGGTTGAAGATGAAGTTG+TGG + chr5_4:11864459-11864478 None:intergenic 40.0%
! AATACCTTCTTCTAACGGGT+CGG - chr5_4:11864559-11864578 Msa0837800:CDS 40.0%
!! CAAAGTGTTTTTGCTCCAAG+GGG + chr5_4:11864671-11864690 None:intergenic 40.0%
!! GCAAAGTGTTTTTGCTCCAA+GGG + chr5_4:11864672-11864691 None:intergenic 40.0%
!! TGCAAAGTGTTTTTGCTCCA+AGG + chr5_4:11864673-11864692 None:intergenic 40.0%
AACACTTTGCAATGCATGTG+GGG - chr5_4:11864682-11864701 Msa0837800:CDS 40.0%
TGAAAATGTAGGGCTACAAG+CGG + chr5_4:11864747-11864766 None:intergenic 40.0%
! AGATTTTAGACCCGGTTCAA+TGG - chr5_4:11864968-11864987 Msa0837800:CDS 40.0%
! GATTTTAGACCCGGTTCAAT+GGG - chr5_4:11864969-11864988 Msa0837800:CDS 40.0%
TGCGGTAGGTTAGGTTAATT+AGG - chr5_4:11865033-11865052 Msa0837800:CDS 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr5_4:11865097-11865116 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr5_4:11865098-11865117 None:intergenic 40.0%
TGGGAAGAGAGAGAAAGAAA+CGG - chr5_4:11863430-11863449 Msa0837800:three_prime_UTR 40.0%
AGAGAAGAGGATAGGAAGTT+TGG + chr5_4:11863512-11863531 None:intergenic 40.0%
! ATGGTGGAAGAAGAATGCAA+AGG + chr5_4:11863546-11863565 None:intergenic 40.0%
TGATATGGTTGAGAGAGGAA+TGG + chr5_4:11863565-11863584 None:intergenic 40.0%
GAAACTGATATGGTTGAGAG+AGG + chr5_4:11863570-11863589 None:intergenic 40.0%
! CAGCGTTGAAAACCAGTTTA+AGG - chr5_4:11863768-11863787 Msa0837800:CDS 40.0%
TCAGTCCTCAATGCACAAAA+TGG - chr5_4:11863827-11863846 Msa0837800:CDS 40.0%
! TTTACTTTGAGGGAGAGACA+AGG + chr5_4:11863941-11863960 None:intergenic 40.0%
! ATCTTCTTTGAGAGAGAGAG+TGG + chr5_4:11863987-11864006 None:intergenic 40.0%
! TGTACAGAGTGATGATGTAG+CGG - chr5_4:11864187-11864206 Msa0837800:CDS 40.0%
!! ATGATGTAGCGGATTTGGAA+TGG - chr5_4:11864198-11864217 Msa0837800:CDS 40.0%
!! GAAGATACTGATTCCTTCTC+TGG - chr5_4:11864236-11864255 Msa0837800:CDS 40.0%
!! TACTGATTCCTTCTCTGGAA+TGG - chr5_4:11864241-11864260 Msa0837800:CDS 40.0%
TGTTAAAGCCATTCCAGAGA+AGG + chr5_4:11864252-11864271 None:intergenic 40.0%
TGGGTTCTTCAAACACAACA+AGG + chr5_4:11864301-11864320 None:intergenic 40.0%
!! CTTCTAGCTTTGGTTTGAAC+CGG + chr5_4:11864365-11864384 None:intergenic 40.0%
GGTTGAGCTTGAAGAAGAAT+CGG + chr5_4:11864432-11864451 None:intergenic 40.0%
AGAGGTTGAAGATGAAGTTG+TGG + chr5_4:11864459-11864478 None:intergenic 40.0%
! AATACCTTCTTCTAACGGGT+CGG - chr5_4:11864559-11864578 Msa0837800:CDS 40.0%
!! CAAAGTGTTTTTGCTCCAAG+GGG + chr5_4:11864671-11864690 None:intergenic 40.0%
!! GCAAAGTGTTTTTGCTCCAA+GGG + chr5_4:11864672-11864691 None:intergenic 40.0%
!! TGCAAAGTGTTTTTGCTCCA+AGG + chr5_4:11864673-11864692 None:intergenic 40.0%
AACACTTTGCAATGCATGTG+GGG - chr5_4:11864682-11864701 Msa0837800:CDS 40.0%
TGAAAATGTAGGGCTACAAG+CGG + chr5_4:11864747-11864766 None:intergenic 40.0%
! AGATTTTAGACCCGGTTCAA+TGG - chr5_4:11864968-11864987 Msa0837800:CDS 40.0%
! GATTTTAGACCCGGTTCAAT+GGG - chr5_4:11864969-11864988 Msa0837800:CDS 40.0%
TGCGGTAGGTTAGGTTAATT+AGG - chr5_4:11865033-11865052 Msa0837800:CDS 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr5_4:11865097-11865116 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr5_4:11865098-11865117 None:intergenic 40.0%
GGGAAGAGAGAGAAAGAAAC+GGG - chr5_4:11863431-11863450 Msa0837800:three_prime_UTR 45.0%
TATGGTTGAGAGAGGAATGG+TGG + chr5_4:11863562-11863581 None:intergenic 45.0%
AATACCTGTGAGTGAGGATG+AGG + chr5_4:11863624-11863643 None:intergenic 45.0%
CAACGTGAGAGAAGTCAAGA+AGG + chr5_4:11863883-11863902 None:intergenic 45.0%
! TGAGAGAGAGAGTGGTGTTA+GGG + chr5_4:11863979-11863998 None:intergenic 45.0%
TTGAGAGAGAGAGTGGTGTT+AGG + chr5_4:11863980-11863999 None:intergenic 45.0%
!! GAGTGATGATGTAGCGGATT+TGG - chr5_4:11864193-11864212 Msa0837800:CDS 45.0%
!! GGGTTTTCTTGTTTCGGCTT+GGG + chr5_4:11864320-11864339 None:intergenic 45.0%
CAAGCCGAAACAAGAAAACC+CGG - chr5_4:11864319-11864338 Msa0837800:CDS 45.0%
!!! GGCTCTTTTGCTTCTAGCTT+TGG + chr5_4:11864375-11864394 None:intergenic 45.0%
AGAAGCAAAAGAGCCAGAAC+CGG - chr5_4:11864380-11864399 Msa0837800:CDS 45.0%
TGAAGATGAAGTTGTGGTGG+TGG + chr5_4:11864453-11864472 None:intergenic 45.0%
GGTTGAAGATGAAGTTGTGG+TGG + chr5_4:11864456-11864475 None:intergenic 45.0%
! ATACCTTCTTCTAACGGGTC+GGG - chr5_4:11864560-11864579 Msa0837800:CDS 45.0%
GTGTAACAAAGACTCCTCAG+TGG - chr5_4:11864636-11864655 Msa0837800:CDS 45.0%
ATGTGGGGTCCGTTTCAAAT+CGG - chr5_4:11864697-11864716 Msa0837800:CDS 45.0%
! ACAACCGACCCGATTTGAAA+CGG + chr5_4:11864709-11864728 None:intergenic 45.0%
GAAAATGTAGGGCTACAAGC+GGG + chr5_4:11864746-11864765 None:intergenic 45.0%
AATTGCACTCAAACCACCAC+CGG - chr5_4:11864771-11864790 Msa0837800:CDS 45.0%
!! ACCGGAAAGTGCTTGAAATG+CGG - chr5_4:11864789-11864808 Msa0837800:CDS 45.0%
AACTAGGAACAACCGGAGAA+CGG + chr5_4:11864868-11864887 None:intergenic 45.0%
! GGTAGTGCAGATTTTAGACC+CGG - chr5_4:11864960-11864979 Msa0837800:CDS 45.0%
TTCCTTGTATTGAGTGCGGT+AGG - chr5_4:11865019-11865038 Msa0837800:CDS 45.0%
AACCTACCGCACTCAATACA+AGG + chr5_4:11865024-11865043 None:intergenic 45.0%
TGTATTGAGTGCGGTAGGTT+AGG - chr5_4:11865024-11865043 Msa0837800:CDS 45.0%
GGGAAGAGAGAGAAAGAAAC+GGG - chr5_4:11863431-11863450 Msa0837800:three_prime_UTR 45.0%
TATGGTTGAGAGAGGAATGG+TGG + chr5_4:11863562-11863581 None:intergenic 45.0%
AATACCTGTGAGTGAGGATG+AGG + chr5_4:11863624-11863643 None:intergenic 45.0%
CAACGTGAGAGAAGTCAAGA+AGG + chr5_4:11863883-11863902 None:intergenic 45.0%
! TGAGAGAGAGAGTGGTGTTA+GGG + chr5_4:11863979-11863998 None:intergenic 45.0%
TTGAGAGAGAGAGTGGTGTT+AGG + chr5_4:11863980-11863999 None:intergenic 45.0%
!! GAGTGATGATGTAGCGGATT+TGG - chr5_4:11864193-11864212 Msa0837800:CDS 45.0%
!! GGGTTTTCTTGTTTCGGCTT+GGG + chr5_4:11864320-11864339 None:intergenic 45.0%
CAAGCCGAAACAAGAAAACC+CGG - chr5_4:11864319-11864338 Msa0837800:CDS 45.0%
!!! GGCTCTTTTGCTTCTAGCTT+TGG + chr5_4:11864375-11864394 None:intergenic 45.0%
AGAAGCAAAAGAGCCAGAAC+CGG - chr5_4:11864380-11864399 Msa0837800:CDS 45.0%
TGAAGATGAAGTTGTGGTGG+TGG + chr5_4:11864453-11864472 None:intergenic 45.0%
GGTTGAAGATGAAGTTGTGG+TGG + chr5_4:11864456-11864475 None:intergenic 45.0%
! ATACCTTCTTCTAACGGGTC+GGG - chr5_4:11864560-11864579 Msa0837800:CDS 45.0%
GTGTAACAAAGACTCCTCAG+TGG - chr5_4:11864636-11864655 Msa0837800:CDS 45.0%
ATGTGGGGTCCGTTTCAAAT+CGG - chr5_4:11864697-11864716 Msa0837800:CDS 45.0%
! ACAACCGACCCGATTTGAAA+CGG + chr5_4:11864709-11864728 None:intergenic 45.0%
GAAAATGTAGGGCTACAAGC+GGG + chr5_4:11864746-11864765 None:intergenic 45.0%
AATTGCACTCAAACCACCAC+CGG - chr5_4:11864771-11864790 Msa0837800:CDS 45.0%
!! ACCGGAAAGTGCTTGAAATG+CGG - chr5_4:11864789-11864808 Msa0837800:CDS 45.0%
AACTAGGAACAACCGGAGAA+CGG + chr5_4:11864868-11864887 None:intergenic 45.0%
! GGTAGTGCAGATTTTAGACC+CGG - chr5_4:11864960-11864979 Msa0837800:CDS 45.0%
TTCCTTGTATTGAGTGCGGT+AGG - chr5_4:11865019-11865038 Msa0837800:CDS 45.0%
AACCTACCGCACTCAATACA+AGG + chr5_4:11865024-11865043 None:intergenic 45.0%
TGTATTGAGTGCGGTAGGTT+AGG - chr5_4:11865024-11865043 Msa0837800:CDS 45.0%
!! ATGAAGGGTGAAAGCGTCCA+AGG + chr5_4:11863478-11863497 None:intergenic 50.0%
TCTTCCTCATCCTCACTCAC+AGG - chr5_4:11863617-11863636 Msa0837800:three_prime_UTR 50.0%
GGAACGTTGAGTTCGTTGGT+GGG + chr5_4:11864022-11864041 None:intergenic 50.0%
CACCAACGAACTCAACGTTC+CGG - chr5_4:11864021-11864040 Msa0837800:CDS 50.0%
TACCGGAACGTTGAGTTCGT+TGG + chr5_4:11864026-11864045 None:intergenic 50.0%
!! CGGGTTTTCTTGTTTCGGCT+TGG + chr5_4:11864321-11864340 None:intergenic 50.0%
AAAGAGCCAGAACCGGAGTT+AGG - chr5_4:11864387-11864406 Msa0837800:intron 50.0%
AAGAGCCAGAACCGGAGTTA+GGG - chr5_4:11864388-11864407 Msa0837800:intron 50.0%
GAATGGCCAAACCCTAACTC+CGG + chr5_4:11864402-11864421 None:intergenic 50.0%
GGAGTTAGGGTTTGGCCATT+CGG - chr5_4:11864401-11864420 Msa0837800:intron 50.0%
GAGTTAGGGTTTGGCCATTC+GGG - chr5_4:11864402-11864421 Msa0837800:intron 50.0%
GAAGAATCGGTTGACCCGAA+TGG + chr5_4:11864419-11864438 None:intergenic 50.0%
!! GGGACTAGTTGGAGATGAAG+AGG + chr5_4:11864477-11864496 None:intergenic 50.0%
AAGACTCCTCAGTGGAGAAG+TGG - chr5_4:11864644-11864663 Msa0837800:CDS 50.0%
TGTGGGGTCCGTTTCAAATC+GGG - chr5_4:11864698-11864717 Msa0837800:CDS 50.0%
TTTCAAGCACTTTCCGGTGG+TGG + chr5_4:11864787-11864806 None:intergenic 50.0%
GCATTTCAAGCACTTTCCGG+TGG + chr5_4:11864790-11864809 None:intergenic 50.0%
GCCGCATTTCAAGCACTTTC+CGG + chr5_4:11864793-11864812 None:intergenic 50.0%
!! GGAAAGTGCTTGAAATGCGG+CGG - chr5_4:11864792-11864811 Msa0837800:CDS 50.0%
!! AACTGGTTTGTCCCGTTCTC+CGG - chr5_4:11864853-11864872 Msa0837800:intron 50.0%
ACTAGGAACAACCGGAGAAC+GGG + chr5_4:11864867-11864886 None:intergenic 50.0%
TAACTCGGGTCCCATTGAAC+CGG + chr5_4:11864982-11865001 None:intergenic 50.0%
!! ATGAAGGGTGAAAGCGTCCA+AGG + chr5_4:11863478-11863497 None:intergenic 50.0%
TCTTCCTCATCCTCACTCAC+AGG - chr5_4:11863617-11863636 Msa0837800:three_prime_UTR 50.0%
GGAACGTTGAGTTCGTTGGT+GGG + chr5_4:11864022-11864041 None:intergenic 50.0%
CACCAACGAACTCAACGTTC+CGG - chr5_4:11864021-11864040 Msa0837800:CDS 50.0%
TACCGGAACGTTGAGTTCGT+TGG + chr5_4:11864026-11864045 None:intergenic 50.0%
!! CGGGTTTTCTTGTTTCGGCT+TGG + chr5_4:11864321-11864340 None:intergenic 50.0%
AAAGAGCCAGAACCGGAGTT+AGG - chr5_4:11864387-11864406 Msa0837800:intron 50.0%
AAGAGCCAGAACCGGAGTTA+GGG - chr5_4:11864388-11864407 Msa0837800:intron 50.0%
GAATGGCCAAACCCTAACTC+CGG + chr5_4:11864402-11864421 None:intergenic 50.0%
GGAGTTAGGGTTTGGCCATT+CGG - chr5_4:11864401-11864420 Msa0837800:intron 50.0%
GAGTTAGGGTTTGGCCATTC+GGG - chr5_4:11864402-11864421 Msa0837800:intron 50.0%
GAAGAATCGGTTGACCCGAA+TGG + chr5_4:11864419-11864438 None:intergenic 50.0%
!! GGGACTAGTTGGAGATGAAG+AGG + chr5_4:11864477-11864496 None:intergenic 50.0%
AAGACTCCTCAGTGGAGAAG+TGG - chr5_4:11864644-11864663 Msa0837800:CDS 50.0%
TGTGGGGTCCGTTTCAAATC+GGG - chr5_4:11864698-11864717 Msa0837800:CDS 50.0%
TTTCAAGCACTTTCCGGTGG+TGG + chr5_4:11864787-11864806 None:intergenic 50.0%
GCATTTCAAGCACTTTCCGG+TGG + chr5_4:11864790-11864809 None:intergenic 50.0%
GCCGCATTTCAAGCACTTTC+CGG + chr5_4:11864793-11864812 None:intergenic 50.0%
!! GGAAAGTGCTTGAAATGCGG+CGG - chr5_4:11864792-11864811 Msa0837800:CDS 50.0%
!! AACTGGTTTGTCCCGTTCTC+CGG - chr5_4:11864853-11864872 Msa0837800:intron 50.0%
ACTAGGAACAACCGGAGAAC+GGG + chr5_4:11864867-11864886 None:intergenic 50.0%
TAACTCGGGTCCCATTGAAC+CGG + chr5_4:11864982-11865001 None:intergenic 50.0%
CGGAACGTTGAGTTCGTTGG+TGG + chr5_4:11864023-11864042 None:intergenic 55.0%
CCAAACCCTAACTCCGGTTC+TGG + chr5_4:11864396-11864415 None:intergenic 55.0%
CCAGAACCGGAGTTAGGGTT+TGG - chr5_4:11864393-11864412 Msa0837800:intron 55.0%
TGACCCGACCCGTTAGAAGA+AGG + chr5_4:11864566-11864585 None:intergenic 55.0%
! TCTTCTAACGGGTCGGGTCA+AGG - chr5_4:11864566-11864585 Msa0837800:CDS 55.0%
!! TCAAGGTGGTGCGCTGGTTA+TGG - chr5_4:11864583-11864602 Msa0837800:CDS 55.0%
GGGTCCGTTTCAAATCGGGT+CGG - chr5_4:11864702-11864721 Msa0837800:CDS 55.0%
CTACAAGCGGGTCGATACTC+GGG + chr5_4:11864734-11864753 None:intergenic 55.0%
GCTACAAGCGGGTCGATACT+CGG + chr5_4:11864735-11864754 None:intergenic 55.0%
GCTTGAAATGCGGCGGAAGA+AGG - chr5_4:11864799-11864818 Msa0837800:CDS 55.0%
TGAAATGCGGCGGAAGAAGG+AGG - chr5_4:11864802-11864821 Msa0837800:CDS 55.0%
CGGAAGAAGGAGGTTGTTGG+TGG - chr5_4:11864812-11864831 Msa0837800:CDS 55.0%
AACTCGGGTCCCATTGAACC+GGG + chr5_4:11864981-11865000 None:intergenic 55.0%
CGGAACGTTGAGTTCGTTGG+TGG + chr5_4:11864023-11864042 None:intergenic 55.0%
CCAAACCCTAACTCCGGTTC+TGG + chr5_4:11864396-11864415 None:intergenic 55.0%
CCAGAACCGGAGTTAGGGTT+TGG - chr5_4:11864393-11864412 Msa0837800:intron 55.0%
TGACCCGACCCGTTAGAAGA+AGG + chr5_4:11864566-11864585 None:intergenic 55.0%
! TCTTCTAACGGGTCGGGTCA+AGG - chr5_4:11864566-11864585 Msa0837800:CDS 55.0%
!! TCAAGGTGGTGCGCTGGTTA+TGG - chr5_4:11864583-11864602 Msa0837800:CDS 55.0%
GGGTCCGTTTCAAATCGGGT+CGG - chr5_4:11864702-11864721 Msa0837800:CDS 55.0%
CTACAAGCGGGTCGATACTC+GGG + chr5_4:11864734-11864753 None:intergenic 55.0%
GCTACAAGCGGGTCGATACT+CGG + chr5_4:11864735-11864754 None:intergenic 55.0%
GCTTGAAATGCGGCGGAAGA+AGG - chr5_4:11864799-11864818 Msa0837800:CDS 55.0%
TGAAATGCGGCGGAAGAAGG+AGG - chr5_4:11864802-11864821 Msa0837800:CDS 55.0%
CGGAAGAAGGAGGTTGTTGG+TGG - chr5_4:11864812-11864831 Msa0837800:CDS 55.0%
AACTCGGGTCCCATTGAACC+GGG + chr5_4:11864981-11865000 None:intergenic 55.0%
! TCTAACGGGTCGGGTCAAGG+TGG - chr5_4:11864569-11864588 Msa0837800:CDS 60.0%
!! AGGTGGTGCGCTGGTTATGG+CGG - chr5_4:11864586-11864605 Msa0837800:CDS 60.0%
CCACAATGACTGCACCGTCG+CGG + chr5_4:11864617-11864636 None:intergenic 60.0%
AGGGGTCCACTTCTCCACTG+AGG + chr5_4:11864653-11864672 None:intergenic 60.0%
CAGTGGAGAAGTGGACCCCT+TGG - chr5_4:11864653-11864672 Msa0837800:CDS 60.0%
CGGCGGAAGAAGGAGGTTGT+TGG - chr5_4:11864809-11864828 Msa0837800:CDS 60.0%
! TCTAACGGGTCGGGTCAAGG+TGG - chr5_4:11864569-11864588 Msa0837800:CDS 60.0%
!! AGGTGGTGCGCTGGTTATGG+CGG - chr5_4:11864586-11864605 Msa0837800:CDS 60.0%
CCACAATGACTGCACCGTCG+CGG + chr5_4:11864617-11864636 None:intergenic 60.0%
AGGGGTCCACTTCTCCACTG+AGG + chr5_4:11864653-11864672 None:intergenic 60.0%
CAGTGGAGAAGTGGACCCCT+TGG - chr5_4:11864653-11864672 Msa0837800:CDS 60.0%
CGGCGGAAGAAGGAGGTTGT+TGG - chr5_4:11864809-11864828 Msa0837800:CDS 60.0%
CAATGACTGCACCGTCGCGG+TGG + chr5_4:11864614-11864633 None:intergenic 65.0%
CCGCGACGGTGCAGTCATTG+TGG - chr5_4:11864614-11864633 Msa0837800:CDS 65.0%
CAATGACTGCACCGTCGCGG+TGG + chr5_4:11864614-11864633 None:intergenic 65.0%
CCGCGACGGTGCAGTCATTG+TGG - chr5_4:11864614-11864633 Msa0837800:CDS 65.0%
GTCGGGTCAAGGTGGTGCGC+TGG - chr5_4:11864577-11864596 Msa0837800:CDS 70.0%
TTATGGCGGCGCCACCGCGA+CGG - chr5_4:11864600-11864619 Msa0837800:CDS 70.0%
GTCGGGTCAAGGTGGTGCGC+TGG - chr5_4:11864577-11864596 Msa0837800:CDS 70.0%
TTATGGCGGCGCCACCGCGA+CGG - chr5_4:11864600-11864619 Msa0837800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11863380 11865215 11863380 ID=Msa0837800;Name=Msa0837800
chr5_4 mRNA 11863380 11865215 11863380 ID=Msa0837800-mRNA-1;Parent=Msa0837800;Name=Msa0837800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=121|1|1|1|1|1|3|323|380
chr5_4 exon 11863380 11864401 11863380 ID=Msa0837800-mRNA-1:exon:5224;Parent=Msa0837800-mRNA-1
chr5_4 exon 11864553 11864858 11864553 ID=Msa0837800-mRNA-1:exon:5223;Parent=Msa0837800-mRNA-1
chr5_4 exon 11864957 11865215 11864957 ID=Msa0837800-mRNA-1:exon:5222;Parent=Msa0837800-mRNA-1
chr5_4 five_prime_UTR 11865095 11865215 11865095 ID=Msa0837800-mRNA-1:five_prime_utr;Parent=Msa0837800-mRNA-1
chr5_4 CDS 11864957 11865094 11864957 ID=Msa0837800-mRNA-1:cds;Parent=Msa0837800-mRNA-1
chr5_4 CDS 11864553 11864858 11864553 ID=Msa0837800-mRNA-1:cds;Parent=Msa0837800-mRNA-1
chr5_4 CDS 11863703 11864401 11863703 ID=Msa0837800-mRNA-1:cds;Parent=Msa0837800-mRNA-1
chr5_4 three_prime_UTR 11863380 11863702 11863380 ID=Msa0837800-mRNA-1:three_prime_utr;Parent=Msa0837800-mRNA-1
Gene Sequence

>Msa0837800

ATGCTTTACCAAACTTCCTATCCTCTTCTCTTTCAATTTCATCCTTTGCATTCTTCTTCCACCATTCCTCTCTCAACCATATCAGTTTCACCACAAAAACTTTCTCTCTTTTCTCATCTTCCTCATCCTCACTCACAGGCTTCAAAAACGGAAATGGAGTGCGTTGAAACAGCGTTGAAAACCAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAAATTTCAGTCCTCAATGCACAAAATGGAACAACTTCTGATGATTTTTTCGTTGACGACCTTCTTGACTTCTCTCACGTTGAAGAACAACACCAAGAAGAAGAACAAGAACACTCTCCTTGTCTCTCCCTCAAAGTAAACCATGAAACTTCAAACCCTAACACCACTCTCTCTCTCAAAGAAGATTATTCTTCTCTACCCACCAACGAACTCAACGTTCCGAGTGATGATGTAGCGGATTTGGAATGGCTTTCACATTTCGTTGAAGATACTGATTCCTTCTCTGGAATGGCTTTAACAACAACAACGGAGAAAAACCCTAAAAGCCTTGTTGTGTTTGAAGAACCCAAGCCGAAACAAGAAAACCCGGTTTTTACTACTTTCAAAACACCGGTTCAAACCAAAGCTAGAAGCAAAAGAGCCAGAACCGGAGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCAACCTCTTCATCTCCAACTAGTCCCTTACTGATTTACACCAACATGCTTCAAAGTTTTGACTCGGTTAAGGTAAAGAAACCGAAGAAAATACCTTCTTCTAACGGGTCGGGTCAAGGTGGTGCGCTGGTTATGGCGGCGCCACCGCGACGGTGCAGTCATTGTGGTGTAACAAAGACTCCTCAGTGGAGAAGTGGACCCCTTGGAGCAAAAACACTTTGCAATGCATGTGGGGTCCGTTTCAAATCGGGTCGGTTGTTGCCCGAGTATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTGCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACTGGTTTGTCCCGTTCTCCGGTTGTTCCTAGTTTTTGA

Protein sequence

>Msa0837800

MLYQTSYPLLFQFHPLHSSSTIPLSTISVSPQKLSLFSHLPHPHSQASKTEMECVETALKTSLRKDITPQTFVDEISVLNAQNGTTSDDFFVDDLLDFSHVEEQHQEEEQEHSPCLSLKVNHETSNPNTTLSLKEDYSSLPTNELNVPSDDVADLEWLSHFVEDTDSFSGMALTTTTEKNPKSLVVFEEPKPKQENPVFTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLLIYTNMLQSFDSVKVKKPKKIPSSNGSGQGGALVMAAPPRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGLSRSPVVPSF*