Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717390 | XP_024639890.1 | 95.176 | 767 | 37 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717390 | sp|O65649|FPP5_ARATH | 48.936 | 517 | 214 | 10 | 1 | 482 | 1 | 502 | 2.56e-137 | 433 |
| Msa0717390 | sp|O65649|FPP5_ARATH | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 1.11e-17 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717390 | A0A072UD75 | 95.176 | 767 | 37 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717390 | Msa0758430 | 0.889357 | 2.604509e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717390 | MtrunA17_Chr5g0405291 | 95.046 | 767 | 37 | 1 | 1 | 767 | 1 | 766 | 0.0 | 1420 |
| Msa0717390 | MtrunA17_Chr3g0142411 | 46.208 | 567 | 234 | 9 | 1 | 509 | 1 | 554 | 6.98e-132 | 418 |
| Msa0717390 | MtrunA17_Chr3g0142411 | 36.996 | 273 | 152 | 6 | 499 | 767 | 840 | 1096 | 2.06e-25 | 113 |
| Msa0717390 | MtrunA17_Chr1g0156371 | 48.141 | 538 | 234 | 9 | 1 | 503 | 1 | 528 | 1.21e-131 | 417 |
| Msa0717390 | MtrunA17_Chr1g0156371 | 33.916 | 286 | 143 | 6 | 503 | 767 | 821 | 1081 | 5.61e-31 | 130 |
| Msa0717390 | MtrunA17_Chr4g0053121 | 34.608 | 497 | 259 | 10 | 1 | 479 | 1 | 449 | 8.58e-56 | 207 |
| Msa0717390 | MtrunA17_Chr8g0384881 | 34.494 | 316 | 148 | 7 | 1 | 300 | 1 | 273 | 6.06e-39 | 153 |
| Msa0717390 | MtrunA17_Chr1g0159951 | 38.839 | 224 | 112 | 3 | 77 | 300 | 145 | 343 | 1.83e-35 | 144 |
| Msa0717390 | MtrunA17_Chr3g0130811 | 38.326 | 227 | 117 | 4 | 74 | 300 | 54 | 257 | 1.71e-30 | 128 |
| Msa0717390 | MtrunA17_Chr5g0401911 | 35.789 | 190 | 122 | 0 | 72 | 261 | 43 | 232 | 9.59e-27 | 117 |
| Msa0717390 | MtrunA17_Chr4g0044561 | 27.763 | 371 | 223 | 8 | 137 | 479 | 80 | 433 | 7.20e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717390 | AT4G36120.2 | 48.936 | 517 | 214 | 10 | 1 | 482 | 1 | 502 | 2.60e-138 | 433 |
| Msa0717390 | AT4G36120.2 | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 1.12e-18 | 91.7 |
| Msa0717390 | AT4G36120.1 | 48.936 | 517 | 214 | 10 | 1 | 482 | 1 | 502 | 2.60e-138 | 433 |
| Msa0717390 | AT4G36120.1 | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 1.12e-18 | 91.7 |
| Msa0717390 | AT1G19835.6 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.6 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G19835.5 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.5 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G19835.3 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.3 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G19835.1 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.1 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G19835.4 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.4 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G19835.2 | 45.155 | 516 | 216 | 8 | 1 | 477 | 1 | 488 | 6.77e-123 | 392 |
| Msa0717390 | AT1G19835.2 | 45.695 | 151 | 77 | 2 | 503 | 651 | 750 | 897 | 1.95e-22 | 103 |
| Msa0717390 | AT1G47900.2 | 40.214 | 562 | 223 | 11 | 1 | 477 | 1 | 534 | 3.49e-102 | 338 |
| Msa0717390 | AT1G47900.2 | 36.641 | 262 | 146 | 4 | 502 | 762 | 807 | 1049 | 5.05e-30 | 128 |
| Msa0717390 | AT1G47900.3 | 40.214 | 562 | 223 | 11 | 1 | 477 | 1 | 534 | 4.25e-102 | 338 |
| Msa0717390 | AT1G47900.3 | 35.878 | 262 | 150 | 3 | 502 | 762 | 807 | 1051 | 1.06e-29 | 127 |
| Msa0717390 | AT1G47900.1 | 40.214 | 562 | 223 | 11 | 1 | 477 | 1 | 534 | 4.25e-102 | 338 |
| Msa0717390 | AT1G47900.1 | 35.878 | 262 | 150 | 3 | 502 | 762 | 807 | 1051 | 1.06e-29 | 127 |
| Msa0717390 | AT2G23360.1 | 33.264 | 481 | 257 | 9 | 1 | 476 | 1 | 422 | 4.78e-52 | 196 |
| Msa0717390 | AT1G77580.2 | 35.268 | 224 | 110 | 3 | 76 | 299 | 62 | 250 | 1.84e-28 | 122 |
| Msa0717390 | AT1G77580.3 | 35.268 | 224 | 110 | 3 | 76 | 299 | 62 | 250 | 1.84e-28 | 122 |
| Msa0717390 | AT1G77580.4 | 35.268 | 224 | 110 | 3 | 76 | 299 | 28 | 216 | 1.97e-28 | 122 |
| Msa0717390 | AT1G77580.1 | 35.586 | 222 | 108 | 3 | 76 | 297 | 28 | 214 | 2.25e-28 | 121 |
| Msa0717390 | AT1G21810.3 | 33.173 | 208 | 97 | 3 | 90 | 297 | 13 | 178 | 5.88e-22 | 101 |
| Msa0717390 | AT1G21810.1 | 33.173 | 208 | 97 | 3 | 90 | 297 | 13 | 178 | 5.88e-22 | 101 |
| Msa0717390 | AT2G24470.1 | 46.667 | 75 | 40 | 0 | 155 | 229 | 14 | 88 | 7.22e-13 | 65.5 |
| Msa0717390 | AT3G19370.3 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.26e-11 | 67.4 |
| Msa0717390 | AT3G19370.1 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.26e-11 | 67.4 |
| Msa0717390 | AT3G19370.2 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.26e-11 | 67.4 |
Find 143 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGCCAAATTTGATTTC+TGG | 0.170930 | 5_1:-11171994 | None:intergenic |
| ATTAGATAACAAGGAAAATT+TGG | 0.179855 | 5_1:+11170704 | Msa0717390:CDS |
| TTCAAATTCAAATTCATTCT+TGG | 0.202577 | 5_1:+11169541 | Msa0717390:five_prime_UTR |
| TCCTCAGTTTCTGACCATTT+TGG | 0.210971 | 5_1:+11172121 | Msa0717390:CDS |
| TTCATTTGTTTGAAACCTTC+TGG | 0.226151 | 5_1:-11173243 | None:intergenic |
| TTGTCTTCTGTGGCACATTT+AGG | 0.226755 | 5_1:+11170435 | Msa0717390:CDS |
| TTACACAACCAGCTAAATTT+TGG | 0.226776 | 5_1:-11173775 | None:intergenic |
| CAAATTTGGCAATCAATTAT+AGG | 0.262887 | 5_1:+11172002 | Msa0717390:CDS |
| AATAGGATCGATACAAAATT+AGG | 0.268768 | 5_1:-11174054 | None:intergenic |
| TCTTCCGTTAAACCGAATTA+TGG | 0.276810 | 5_1:+11173266 | Msa0717390:CDS |
| AGTGACTCAACAGGACTTTC+TGG | 0.280320 | 5_1:-11172094 | None:intergenic |
| TGAAGCAGAAATAGACAAAT+TGG | 0.281556 | 5_1:+11171358 | Msa0717390:CDS |
| ATGCTGAATTACAGGCTTCT+AGG | 0.291661 | 5_1:+11171894 | Msa0717390:CDS |
| CTCAAGTAATGCTGAATTAC+AGG | 0.295183 | 5_1:+11171886 | Msa0717390:CDS |
| TTTCCTTGAAGTCGAGAAAA+TGG | 0.296472 | 5_1:+11172216 | Msa0717390:CDS |
| TGTAAAACTTATCATAAAAT+AGG | 0.301469 | 5_1:+11173793 | Msa0717390:three_prime_UTR |
| TTTCATGAAGTGATCTTAGA+AGG | 0.305503 | 5_1:-11171418 | None:intergenic |
| AAGTTCCCAGAAATCAAATT+TGG | 0.309002 | 5_1:+11171988 | Msa0717390:CDS |
| AGTGGAACATGAACAGCTTC+TGG | 0.309011 | 5_1:+11172348 | Msa0717390:CDS |
| ATAGAGAATTTGATTATAAT+AGG | 0.312601 | 5_1:-11174071 | None:intergenic |
| TAAGAACCTCGGATTCTTGC+AGG | 0.313131 | 5_1:-11171808 | None:intergenic |
| GATTGCCAAATTTGATTTCT+GGG | 0.327586 | 5_1:-11171993 | None:intergenic |
| TCATGTTCTTCTCTTCATTT+CGG | 0.328218 | 5_1:-11171586 | None:intergenic |
| AGTTGATACGGTTGATCTTA+AGG | 0.333585 | 5_1:+11172309 | Msa0717390:CDS |
| GAGTCATACGCGCGTATGTC+TGG | 0.339411 | 5_1:+11170606 | Msa0717390:CDS |
| TGTTAAGACTATTGCCTTGC+TGG | 0.341542 | 5_1:+11171652 | Msa0717390:CDS |
| AGATTCAAGTTGACATCTTA+AGG | 0.343122 | 5_1:-11171171 | None:intergenic |
| CGAGGTTCTTACAAAACAAT+TGG | 0.354334 | 5_1:+11171820 | Msa0717390:CDS |
| TAACTCTACTGTTACCAAAA+TGG | 0.357385 | 5_1:-11172135 | None:intergenic |
| GGAGAGTCAAGTAAAAGATT+TGG | 0.364040 | 5_1:+11170653 | Msa0717390:CDS |
| AAAGAGATTGAAAGAAGCTT+TGG | 0.377766 | 5_1:+11171862 | Msa0717390:CDS |
| CTTAAGTCTGTTAACTGTCT+TGG | 0.381509 | 5_1:-11171927 | None:intergenic |
| TGGTTCCACATCATGTCTTT+CGG | 0.389770 | 5_1:+11173409 | Msa0717390:CDS |
| ATCAATTTCATCTGAGGTAT+AGG | 0.389932 | 5_1:-11173309 | None:intergenic |
| GAAATAGACAAATTGGATAA+AGG | 0.390339 | 5_1:+11171365 | Msa0717390:CDS |
| GAACTTTGTTCAAATTTCAA+TGG | 0.398986 | 5_1:+11170584 | Msa0717390:CDS |
| CATCCTTCTGCTTCTGCCAC+AGG | 0.404620 | 5_1:+11173509 | Msa0717390:CDS |
| TAAACTACTCTTAGTCATCT+AGG | 0.405776 | 5_1:-11173895 | None:intergenic |
| TCTGGTGTGTGCAGCGAATT+CGG | 0.413103 | 5_1:+11172722 | Msa0717390:CDS |
| TGATACATACATGGAATAGA+AGG | 0.417989 | 5_1:-11173741 | None:intergenic |
| GAAAGAATAGCTCACTTAGA+TGG | 0.420093 | 5_1:+11171221 | Msa0717390:CDS |
| TGAGCTGCATATGATTTCTA+AGG | 0.421186 | 5_1:+11171553 | Msa0717390:CDS |
| GTTGCCTGGTCCTGCTGCAT+TGG | 0.431761 | 5_1:+11171715 | Msa0717390:CDS |
| GAATTCGACCAGCCATAATT+CGG | 0.436654 | 5_1:-11173278 | None:intergenic |
| TTCATTTGCGCCAATGCAGC+AGG | 0.437784 | 5_1:-11171725 | None:intergenic |
| AACTGAAGAGAGAGAGGAGC+GGG | 0.447087 | 5_1:-11169490 | None:intergenic |
| AACCTTCTGGAGTCAGTTTG+TGG | 0.447519 | 5_1:-11173230 | None:intergenic |
| CCAGCCATAATTCGGTTTAA+CGG | 0.453425 | 5_1:-11173270 | None:intergenic |
| TATGGCTGGTCGAATTCTAA+TGG | 0.453821 | 5_1:+11173284 | Msa0717390:CDS |
| TGCTGGAGGGCGAGTGCCAT+CGG | 0.456284 | 5_1:+11171669 | Msa0717390:CDS |
| GTTGCCGAGGAAGCAGTCTC+AGG | 0.459306 | 5_1:+11170744 | Msa0717390:CDS |
| TCTTCTACTTCTGACATTCA+AGG | 0.461027 | 5_1:+11173353 | Msa0717390:CDS |
| AGAGTTTACCAAAATTTAGC+TGG | 0.467672 | 5_1:+11173767 | Msa0717390:three_prime_UTR |
| GGCGAGTGCCATCGGCTTCG+TGG | 0.475066 | 5_1:+11171677 | Msa0717390:CDS |
| AAGGTGGAACCAACAGAGTC+AGG | 0.475593 | 5_1:-11170414 | None:intergenic |
| TGACCACACACGCTCACATT+TGG | 0.484017 | 5_1:+11169463 | None:intergenic |
| TGAAACTTTCTCAGAACTGA+TGG | 0.487429 | 5_1:+11172189 | Msa0717390:CDS |
| GAGGATGCAAGTGACTCAAC+AGG | 0.490574 | 5_1:-11172103 | None:intergenic |
| CACTTGAAGGGACAAGTGTC+TGG | 0.494043 | 5_1:+11172704 | Msa0717390:intron |
| ACCTTCTGGAGTCAGTTTGT+GGG | 0.494567 | 5_1:-11173229 | None:intergenic |
| TGCTGAATTACAGGCTTCTA+GGG | 0.502811 | 5_1:+11171895 | Msa0717390:CDS |
| ATCAACTGATTGTTTATCTA+CGG | 0.503170 | 5_1:-11172293 | None:intergenic |
| TATTCAATAGTGTTTCTACT+AGG | 0.503479 | 5_1:+11173852 | Msa0717390:three_prime_UTR |
| TCTCTCTTCAGTTAGTAATA+CGG | 0.503858 | 5_1:+11169500 | Msa0717390:five_prime_UTR |
| CAGGAGACACTACATGTACT+TGG | 0.510644 | 5_1:+11173185 | Msa0717390:CDS |
| TGGACCGTCGAGGTTGGCCG+TGG | 0.511395 | 5_1:+11170340 | Msa0717390:CDS |
| AGCTGAAAATAAGTTTCTAA+AGG | 0.517893 | 5_1:+11172486 | Msa0717390:CDS |
| GAAGCAGATAAGAACTGTAA+AGG | 0.520863 | 5_1:+11171262 | Msa0717390:CDS |
| ATGTAGTGTCTCCTGACATT+CGG | 0.520934 | 5_1:-11173177 | None:intergenic |
| ACAGAGTCAGGCGTAACAAA+TGG | 0.522428 | 5_1:-11170402 | None:intergenic |
| TGCGCCAATGCAGCAGGACC+AGG | 0.522465 | 5_1:-11171719 | None:intergenic |
| GCATATGATTTCTAAGGAGA+TGG | 0.522681 | 5_1:+11171559 | Msa0717390:CDS |
| CCGTTAAACCGAATTATGGC+TGG | 0.526070 | 5_1:+11173270 | Msa0717390:CDS |
| TGGCCAAATGTGAGCGTGTG+TGG | 0.530417 | 5_1:-11169466 | None:intergenic |
| ATTTGCAGTGACTGTTTGAA+AGG | 0.533812 | 5_1:+11173982 | Msa0717390:three_prime_UTR |
| TGGTTCCACCTTGTCTTCTG+TGG | 0.533953 | 5_1:+11170425 | Msa0717390:CDS |
| GATTATGAAATCAGCAGAAG+TGG | 0.539890 | 5_1:+11171607 | Msa0717390:CDS |
| CTGAGATGGACCGTCGAGGT+TGG | 0.540820 | 5_1:+11170334 | Msa0717390:exon |
| TTTGTTAACAATTTGCACAC+TGG | 0.543817 | 5_1:-11172257 | None:intergenic |
| AGCATCACTTCTATATCTGT+TGG | 0.546571 | 5_1:+11172058 | Msa0717390:CDS |
| GGCAATAGTCTTAACATCCT+CGG | 0.547132 | 5_1:-11171645 | None:intergenic |
| ATACGCGCGTATGTCTGGAT+TGG | 0.550301 | 5_1:+11170611 | Msa0717390:CDS |
| GTCTCATAAATCATACAACT+TGG | 0.550887 | 5_1:+11172396 | Msa0717390:CDS |
| ACAAGAATGAATCTGAGTGA+TGG | 0.555435 | 5_1:-11169615 | None:intergenic |
| TCACTTCTATATCTGTTGGT+TGG | 0.563147 | 5_1:+11172062 | Msa0717390:CDS |
| GGTTCTTACAAAACAATTGG+AGG | 0.563650 | 5_1:+11171823 | Msa0717390:CDS |
| AGATAAACAATCAGTTGATA+CGG | 0.567751 | 5_1:+11172297 | Msa0717390:CDS |
| TCTTCCACGGCCAACCTCGA+CGG | 0.568224 | 5_1:-11170344 | None:intergenic |
| AAGACTATTGCCTTGCTGGA+GGG | 0.568532 | 5_1:+11171656 | Msa0717390:CDS |
| CAGTGAGCATGTAACAACTC+TGG | 0.569368 | 5_1:-11173475 | None:intergenic |
| TTCATGAAGTGATCTTAGAA+GGG | 0.570828 | 5_1:-11171417 | None:intergenic |
| CTCTAACTCGGACTCAACTT+CGG | 0.571607 | 5_1:-11171477 | None:intergenic |
| TATCTAAGTTCAATATACTC+AGG | 0.572122 | 5_1:-11173698 | None:intergenic |
| ATCCTTCTGCTTCTGCCACA+GGG | 0.573900 | 5_1:+11173510 | Msa0717390:CDS |
| TTTGTTACGCCTGACTCTGT+TGG | 0.573940 | 5_1:+11170405 | Msa0717390:CDS |
| AGACACTACATGTACTTGGT+AGG | 0.574448 | 5_1:+11173189 | Msa0717390:CDS |
| AACTCTCAGTGATACATACA+TGG | 0.579315 | 5_1:-11173750 | None:intergenic |
| ATGGCACTCGCCCTCCAGCA+AGG | 0.580845 | 5_1:-11171666 | None:intergenic |
| CTGTTGCGAAAGAAGTTGCC+TGG | 0.581038 | 5_1:+11171701 | Msa0717390:CDS |
| ACCAAAATGGTCAGAAACTG+AGG | 0.581504 | 5_1:-11172122 | None:intergenic |
| ACTTAAGAGCTTAGAAGCAG+AGG | 0.584151 | 5_1:+11171943 | Msa0717390:CDS |
| TATATCTGTTGGTTGGCACA+AGG | 0.584257 | 5_1:+11172069 | Msa0717390:CDS |
| AGTATGATCAATTTCATCTG+AGG | 0.586679 | 5_1:-11173315 | None:intergenic |
| GCTACCTGAGACTGCTTCCT+CGG | 0.588059 | 5_1:-11170748 | None:intergenic |
| ATTACTAACTGAAGAGAGAG+AGG | 0.596469 | 5_1:-11169496 | None:intergenic |
| GGTGTCCGAAAGACATGATG+TGG | 0.596990 | 5_1:-11173414 | None:intergenic |
| TCTTATGAAATCTCAACAGT+GGG | 0.600638 | 5_1:+11171316 | Msa0717390:CDS |
| TAAGACTATTGCCTTGCTGG+AGG | 0.600745 | 5_1:+11171655 | Msa0717390:CDS |
| TACTGGCCTGCAAGAATCCG+AGG | 0.602204 | 5_1:+11171802 | Msa0717390:CDS |
| TTCCCTGTGGCAGAAGCAGA+AGG | 0.604547 | 5_1:-11173512 | None:intergenic |
| AGTACACGCCACGTCATCAG+TGG | 0.606427 | 5_1:+11171761 | Msa0717390:CDS |
| TAAATGTGCCACAGAAGACA+AGG | 0.607466 | 5_1:-11170433 | None:intergenic |
| TTCTACTAGGCAGTTAACCA+TGG | 0.610434 | 5_1:+11173865 | Msa0717390:three_prime_UTR |
| GATACATACATGGAATAGAA+GGG | 0.614461 | 5_1:-11173740 | None:intergenic |
| TTATTCAGAATTAGATAACA+AGG | 0.616105 | 5_1:+11170695 | Msa0717390:CDS |
| TAACGACATCAATACTCAGA+AGG | 0.617368 | 5_1:+11172752 | Msa0717390:CDS |
| TCAAGTGGCATATATTTGCA+AGG | 0.628295 | 5_1:+11174012 | Msa0717390:three_prime_UTR |
| GCAGATAAGAACTGTAAAGG+AGG | 0.629079 | 5_1:+11171265 | Msa0717390:CDS |
| TGTGGCACATTTAGGAAACC+AGG | 0.634001 | 5_1:+11170443 | Msa0717390:CDS |
| GCCCACAAACTGACTCCAGA+AGG | 0.634614 | 5_1:+11173228 | Msa0717390:CDS |
| GGAAGATCAAGTTGTAAACA+TGG | 0.635524 | 5_1:+11170632 | Msa0717390:CDS |
| AAGTGAGCAGAAAATACAAG+AGG | 0.635994 | 5_1:+11171289 | Msa0717390:CDS |
| GTCATCACGATTCTTTAGTG+AGG | 0.638922 | 5_1:+11172554 | Msa0717390:CDS |
| GCTAAAGAATGATCTCGAAG+AGG | 0.639641 | 5_1:+11172522 | Msa0717390:CDS |
| AGGTTGGGAGAAGGCTGATG+CGG | 0.641496 | 5_1:+11171139 | Msa0717390:intron |
| TCATGTCTTTCGGACACCGA+AGG | 0.647121 | 5_1:+11173419 | Msa0717390:CDS |
| CTGTAATTCAGCATTACTTG+AGG | 0.650113 | 5_1:-11171885 | None:intergenic |
| ACAACATGCAAAAGTTGCCG+AGG | 0.652624 | 5_1:+11170731 | Msa0717390:CDS |
| ATCATCAGACAAAATCACAA+AGG | 0.653952 | 5_1:+11170371 | Msa0717390:CDS |
| TTCTTATGAAATCTCAACAG+TGG | 0.654246 | 5_1:+11171315 | Msa0717390:CDS |
| GCAACAGACCACGAAGCCGA+TGG | 0.654258 | 5_1:-11171685 | None:intergenic |
| GATGGATTCCACTGATGACG+TGG | 0.661086 | 5_1:-11171769 | None:intergenic |
| TTGAAAGGCGAAGACTCAAG+TGG | 0.661820 | 5_1:+11173997 | Msa0717390:three_prime_UTR |
| ACAGGGAAGCAAAATTCACA+TGG | 0.663127 | 5_1:+11173527 | Msa0717390:CDS |
| TATGTACAGCATCATCGATG+AGG | 0.665085 | 5_1:-11173626 | None:intergenic |
| ACAGATATAGAAGTGATGCT+CGG | 0.670258 | 5_1:-11172055 | None:intergenic |
| AGGGTAGTAGAATTCTGAGA+TGG | 0.675085 | 5_1:+11170320 | Msa0717390:intron |
| ACTGAAGAGAGAGAGGAGCG+GGG | 0.676793 | 5_1:-11169489 | None:intergenic |
| GAAGAGAGAGAGGAGCGGGG+TGG | 0.688915 | 5_1:-11169486 | None:intergenic |
| TAACTGAAGAGAGAGAGGAG+CGG | 0.690986 | 5_1:-11169491 | None:intergenic |
| GGCAAACAAACGACACACCG+AGG | 0.712394 | 5_1:+11171628 | Msa0717390:CDS |
| AATTCTGAGATGGACCGTCG+AGG | 0.716124 | 5_1:+11170330 | Msa0717390:exon |
| ATGTGCCACAGAAGACAAGG+TGG | 0.719107 | 5_1:-11170430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTCTTTTTTTTAAAAAA+AGG | - | chr5_1:11170043-11170062 | None:intergenic | 10.0% |
| !!! | ATCTAATTACTTATATATTT+TGG | + | chr5_1:11172968-11172987 | Msa0717390:intron | 10.0% |
| !! | ATAAATCTAGTTAAACTAAA+AGG | + | chr5_1:11170136-11170155 | Msa0717390:intron | 15.0% |
| !! | GAAATTGATTATACATATAA+TGG | + | chr5_1:11172876-11172895 | Msa0717390:intron | 15.0% |
| !! | TGTAAAACTTATCATAAAAT+AGG | + | chr5_1:11173793-11173812 | Msa0717390:three_prime_UTR | 15.0% |
| !! | TTCAAATTCAAATTCATTCT+TGG | + | chr5_1:11169541-11169560 | Msa0717390:five_prime_UTR | 20.0% |
| !!! | TTTGTCATGTTTTGTAAAAA+TGG | - | chr5_1:11169757-11169776 | None:intergenic | 20.0% |
| !! | TGAAAAAATAAGAAAAGAAC+AGG | - | chr5_1:11170543-11170562 | None:intergenic | 20.0% |
| !! | TTATTCAGAATTAGATAACA+AGG | + | chr5_1:11170695-11170714 | Msa0717390:CDS | 20.0% |
| !! | ATTAGATAACAAGGAAAATT+TGG | + | chr5_1:11170704-11170723 | Msa0717390:CDS | 20.0% |
| !! | GTTCTTAAAAAAAAGTTATG+TGG | - | chr5_1:11170809-11170828 | None:intergenic | 20.0% |
| !! | TTTAAGAACTCATCTATATT+AGG | + | chr5_1:11170820-11170839 | Msa0717390:intron | 20.0% |
| !! | GAACTTGTATTTAAATACTA+CGG | - | chr5_1:11170920-11170939 | None:intergenic | 20.0% |
| !! | TTTAAGCTTGATTAATAGAA+TGG | + | chr5_1:11170952-11170971 | Msa0717390:intron | 20.0% |
| !! | TTTACTAGTACATATCATAT+TGG | + | chr5_1:11172791-11172810 | Msa0717390:intron | 20.0% |
| !! | GACTATAGTAAAAAAAATTG+TGG | + | chr5_1:11173649-11173668 | Msa0717390:three_prime_UTR | 20.0% |
| !!! | AATACTAATCACTTGAATTT+TGG | - | chr5_1:11173965-11173984 | None:intergenic | 20.0% |
| !!! | TTCATTCTTGTTTTTACTTC+TGG | + | chr5_1:11169627-11169646 | Msa0717390:five_prime_UTR | 25.0% |
| ! | TATTTGTGTCTATGTTGTAT+TGG | + | chr5_1:11169852-11169871 | Msa0717390:intron | 25.0% |
| !!! | AAGGAAAGGCTATTTTTTTT+GGG | + | chr5_1:11169953-11169972 | Msa0717390:intron | 25.0% |
| ! | AGAAACAGAAAAACCTTTAT+TGG | + | chr5_1:11170061-11170080 | Msa0717390:intron | 25.0% |
| ! | GAAACAGAAAAACCTTTATT+GGG | + | chr5_1:11170062-11170081 | Msa0717390:intron | 25.0% |
| ! | TTTGTCTTAAATTCTTGTGA+TGG | + | chr5_1:11170475-11170494 | Msa0717390:intron | 25.0% |
| !!! | TCTTTTCTTATTTTTTCAGC+AGG | + | chr5_1:11170545-11170564 | Msa0717390:intron | 25.0% |
| ! | GAACTTTGTTCAAATTTCAA+TGG | + | chr5_1:11170584-11170603 | Msa0717390:CDS | 25.0% |
| ! | AACGTAAATAAAGAACACAT+GGG | - | chr5_1:11171040-11171059 | None:intergenic | 25.0% |
| ! | AAACGTAAATAAAGAACACA+TGG | - | chr5_1:11171041-11171060 | None:intergenic | 25.0% |
| ! | TCTGTTCTAACAGAAAATAT+TGG | + | chr5_1:11171086-11171105 | Msa0717390:intron | 25.0% |
| ! | GAAATAGACAAATTGGATAA+AGG | + | chr5_1:11171365-11171384 | Msa0717390:CDS | 25.0% |
| ! | CAAATTTGGCAATCAATTAT+AGG | + | chr5_1:11172002-11172021 | Msa0717390:CDS | 25.0% |
| ! | ATCAACTGATTGTTTATCTA+CGG | - | chr5_1:11172296-11172315 | None:intergenic | 25.0% |
| !! | AGATAAACAATCAGTTGATA+CGG | + | chr5_1:11172297-11172316 | Msa0717390:CDS | 25.0% |
| ! | AGCTGAAAATAAGTTTCTAA+AGG | + | chr5_1:11172486-11172505 | Msa0717390:CDS | 25.0% |
| ! | ATATTGACGAAAAAATGCAA+AGG | + | chr5_1:11172584-11172603 | Msa0717390:CDS | 25.0% |
| ! | ATGATTGAACAATGAATTCA+TGG | - | chr5_1:11173094-11173113 | None:intergenic | 25.0% |
| !!! | TTACTTTTAGAAGTATCAGA+GGG | + | chr5_1:11173602-11173621 | Msa0717390:three_prime_UTR | 25.0% |
| ! | TATCTAAGTTCAATATACTC+AGG | - | chr5_1:11173701-11173720 | None:intergenic | 25.0% |
| ! | GAAACACTATTGAATAAAGT+GGG | - | chr5_1:11173848-11173867 | None:intergenic | 25.0% |
| ! | AGAAACACTATTGAATAAAG+TGG | - | chr5_1:11173849-11173868 | None:intergenic | 25.0% |
| !! | TATTCAATAGTGTTTCTACT+AGG | + | chr5_1:11173852-11173871 | Msa0717390:three_prime_UTR | 25.0% |
| ! | AATAGGATCGATACAAAATT+AGG | - | chr5_1:11174057-11174076 | None:intergenic | 25.0% |
| TCTCTCTTCAGTTAGTAATA+CGG | + | chr5_1:11169500-11169519 | Msa0717390:five_prime_UTR | 30.0% | |
| !!! | CAAGGAAAGGCTATTTTTTT+TGG | + | chr5_1:11169952-11169971 | Msa0717390:intron | 30.0% |
| !!! | AGGAAAGGCTATTTTTTTTG+GGG | + | chr5_1:11169954-11169973 | Msa0717390:intron | 30.0% |
| !!! | TATTTTTTTTGGGGAGGAAA+AGG | + | chr5_1:11169963-11169982 | Msa0717390:intron | 30.0% |
| !!! | ATTTTTTTTGGGGAGGAAAA+GGG | + | chr5_1:11169964-11169983 | Msa0717390:intron | 30.0% |
| ! | TGCATTTTCATTCCCAATAA+AGG | - | chr5_1:11170077-11170096 | None:intergenic | 30.0% |
| TGCTGTCATGAAATATTGAT+TGG | + | chr5_1:11170113-11170132 | Msa0717390:intron | 30.0% | |
| TTGATCATCATCAGGTAAAA+AGG | - | chr5_1:11170282-11170301 | None:intergenic | 30.0% | |
| !!! | TCTGATGATTTTTTCTTCCA+CGG | - | chr5_1:11170360-11170379 | None:intergenic | 30.0% |
| ATCATCAGACAAAATCACAA+AGG | + | chr5_1:11170371-11170390 | Msa0717390:CDS | 30.0% | |
| TAAGACAAAAAGTAAGTACC+TGG | - | chr5_1:11170464-11170483 | None:intergenic | 30.0% | |
| !! | AGGACTTGTTAAGAAAATGT+TGG | + | chr5_1:11170840-11170859 | Msa0717390:intron | 30.0% |
| !! | GGACTTGTTAAGAAAATGTT+GGG | + | chr5_1:11170841-11170860 | Msa0717390:intron | 30.0% |
| ACTCATAGTTACTGATAAGT+AGG | + | chr5_1:11170868-11170887 | Msa0717390:intron | 30.0% | |
| ! | TTTTCTGTTAGAACAGAATC+TGG | - | chr5_1:11171083-11171102 | None:intergenic | 30.0% |
| ! | TTCATACTTGTATGCCTTTT+AGG | + | chr5_1:11171119-11171138 | Msa0717390:intron | 30.0% |
| !! | AGATTCAAGTTGACATCTTA+AGG | - | chr5_1:11171174-11171193 | None:intergenic | 30.0% |
| TTCTTATGAAATCTCAACAG+TGG | + | chr5_1:11171315-11171334 | Msa0717390:CDS | 30.0% | |
| TCTTATGAAATCTCAACAGT+GGG | + | chr5_1:11171316-11171335 | Msa0717390:CDS | 30.0% | |
| TGAAGCAGAAATAGACAAAT+TGG | + | chr5_1:11171358-11171377 | Msa0717390:CDS | 30.0% | |
| TTCATGAAGTGATCTTAGAA+GGG | - | chr5_1:11171420-11171439 | None:intergenic | 30.0% | |
| TTTCATGAAGTGATCTTAGA+AGG | - | chr5_1:11171421-11171440 | None:intergenic | 30.0% | |
| TCATGTTCTTCTCTTCATTT+CGG | - | chr5_1:11171589-11171608 | None:intergenic | 30.0% | |
| ATCCATCAAAGAAAAACTAC+TGG | + | chr5_1:11171785-11171804 | Msa0717390:CDS | 30.0% | |
| !! | CAATTGTTTTGTAAGAACCT+CGG | - | chr5_1:11171822-11171841 | None:intergenic | 30.0% |
| AAAGAGATTGAAAGAAGCTT+TGG | + | chr5_1:11171862-11171881 | Msa0717390:CDS | 30.0% | |
| AAGTTCCCAGAAATCAAATT+TGG | + | chr5_1:11171988-11172007 | Msa0717390:CDS | 30.0% | |
| ! | GATTGCCAAATTTGATTTCT+GGG | - | chr5_1:11171996-11172015 | None:intergenic | 30.0% |
| ! | TGATTGCCAAATTTGATTTC+TGG | - | chr5_1:11171997-11172016 | None:intergenic | 30.0% |
| TAACTCTACTGTTACCAAAA+TGG | - | chr5_1:11172138-11172157 | None:intergenic | 30.0% | |
| TTTGTTAACAATTTGCACAC+TGG | - | chr5_1:11172260-11172279 | None:intergenic | 30.0% | |
| GGACAAAAATGAGAATTTAG+TGG | + | chr5_1:11172330-11172349 | Msa0717390:CDS | 30.0% | |
| GTCTCATAAATCATACAACT+TGG | + | chr5_1:11172396-11172415 | Msa0717390:CDS | 30.0% | |
| AGTACATATCATATTGGTGA+TGG | + | chr5_1:11172797-11172816 | Msa0717390:intron | 30.0% | |
| !! | CATGTTTGAAGGTACTATAT+AGG | - | chr5_1:11172840-11172859 | None:intergenic | 30.0% |
| ! | TTCATTTGTTTGAAACCTTC+TGG | - | chr5_1:11173246-11173265 | None:intergenic | 30.0% |
| ! | ATCAATTTCATCTGAGGTAT+AGG | - | chr5_1:11173312-11173331 | None:intergenic | 30.0% |
| AGTATGATCAATTTCATCTG+AGG | - | chr5_1:11173318-11173337 | None:intergenic | 30.0% | |
| ! | TTTTCATCTTCACACAACTT+TGG | + | chr5_1:11173389-11173408 | Msa0717390:CDS | 30.0% |
| ATTTGTCGAAAAATTGCCTT+CGG | - | chr5_1:11173438-11173457 | None:intergenic | 30.0% | |
| !!! | GTTACTTTTAGAAGTATCAG+AGG | + | chr5_1:11173601-11173620 | Msa0717390:three_prime_UTR | 30.0% |
| GATACATACATGGAATAGAA+GGG | - | chr5_1:11173743-11173762 | None:intergenic | 30.0% | |
| TGATACATACATGGAATAGA+AGG | - | chr5_1:11173744-11173763 | None:intergenic | 30.0% | |
| AGAGTTTACCAAAATTTAGC+TGG | + | chr5_1:11173767-11173786 | Msa0717390:three_prime_UTR | 30.0% | |
| ! | TTACACAACCAGCTAAATTT+TGG | - | chr5_1:11173778-11173797 | None:intergenic | 30.0% |
| TAAACTACTCTTAGTCATCT+AGG | - | chr5_1:11173898-11173917 | None:intergenic | 30.0% | |
| CTTTCAATCAATACTATGTC+AGG | + | chr5_1:11173930-11173949 | Msa0717390:intron | 30.0% | |
| ! | CAATACTATGTCAGGTTTTA+AGG | + | chr5_1:11173938-11173957 | Msa0717390:intron | 30.0% |
| ATTACTAACTGAAGAGAGAG+AGG | - | chr5_1:11169499-11169518 | None:intergenic | 35.0% | |
| ACAAGAATGAATCTGAGTGA+TGG | - | chr5_1:11169618-11169637 | None:intergenic | 35.0% | |
| ATGTCGTTGCTACATAGTTT+AGG | + | chr5_1:11169919-11169938 | Msa0717390:intron | 35.0% | |
| TGTCGTTGCTACATAGTTTA+GGG | + | chr5_1:11169920-11169939 | Msa0717390:intron | 35.0% | |
| ! | TACATAGTTTAGGGTACAAC+TGG | + | chr5_1:11169929-11169948 | Msa0717390:intron | 35.0% |
| !!! | AAAGGCTATTTTTTTTGGGG+AGG | + | chr5_1:11169957-11169976 | Msa0717390:intron | 35.0% |
| !!! | TTTTTTTTGGGGAGGAAAAG+GGG | + | chr5_1:11169965-11169984 | Msa0717390:intron | 35.0% |
| TGAAGTTGCAAGCATTTGAT+AGG | + | chr5_1:11169993-11170012 | Msa0717390:intron | 35.0% | |
| GCATTTGATAGGTGGTTAAA+AGG | + | chr5_1:11170004-11170023 | Msa0717390:intron | 35.0% | |
| TGCTCAAATTGATCATCATC+AGG | - | chr5_1:11170290-11170309 | None:intergenic | 35.0% | |
| AATTTGAGCATACTTTGAGC+AGG | + | chr5_1:11170300-11170319 | Msa0717390:intron | 35.0% | |
| ATTTGAGCATACTTTGAGCA+GGG | + | chr5_1:11170301-11170320 | Msa0717390:intron | 35.0% | |
| ! | GGAAGATCAAGTTGTAAACA+TGG | + | chr5_1:11170632-11170651 | Msa0717390:CDS | 35.0% |
| GGAGAGTCAAGTAAAAGATT+TGG | + | chr5_1:11170653-11170672 | Msa0717390:CDS | 35.0% | |
| TGTCGCTCTATCTAGTAAAT+TGG | + | chr5_1:11170893-11170912 | Msa0717390:intron | 35.0% | |
| !! | TACTTGTATGCCTTTTAGGT+TGG | + | chr5_1:11171123-11171142 | Msa0717390:intron | 35.0% |
| !!! | ACTTGTATGCCTTTTAGGTT+GGG | + | chr5_1:11171124-11171143 | Msa0717390:intron | 35.0% |
| GAAAGAATAGCTCACTTAGA+TGG | + | chr5_1:11171221-11171240 | Msa0717390:CDS | 35.0% | |
| GAAGCAGATAAGAACTGTAA+AGG | + | chr5_1:11171262-11171281 | Msa0717390:CDS | 35.0% | |
| AAGTGAGCAGAAAATACAAG+AGG | + | chr5_1:11171289-11171308 | Msa0717390:CDS | 35.0% | |
| !!! | CTTCTTTTGAAGCTCTAACT+CGG | - | chr5_1:11171492-11171511 | None:intergenic | 35.0% |
| TGAGCTGCATATGATTTCTA+AGG | + | chr5_1:11171553-11171572 | Msa0717390:CDS | 35.0% | |
| ! | GCATATGATTTCTAAGGAGA+TGG | + | chr5_1:11171559-11171578 | Msa0717390:CDS | 35.0% |
| GATTATGAAATCAGCAGAAG+TGG | + | chr5_1:11171607-11171626 | Msa0717390:CDS | 35.0% | |
| CGAGGTTCTTACAAAACAAT+TGG | + | chr5_1:11171820-11171839 | Msa0717390:CDS | 35.0% | |
| GGTTCTTACAAAACAATTGG+AGG | + | chr5_1:11171823-11171842 | Msa0717390:CDS | 35.0% | |
| CTGTAATTCAGCATTACTTG+AGG | - | chr5_1:11171888-11171907 | None:intergenic | 35.0% | |
| CTCAAGTAATGCTGAATTAC+AGG | + | chr5_1:11171886-11171905 | Msa0717390:CDS | 35.0% | |
| CTTAAGTCTGTTAACTGTCT+TGG | - | chr5_1:11171930-11171949 | None:intergenic | 35.0% | |
| ACAGATATAGAAGTGATGCT+CGG | - | chr5_1:11172058-11172077 | None:intergenic | 35.0% | |
| AGCATCACTTCTATATCTGT+TGG | + | chr5_1:11172058-11172077 | Msa0717390:CDS | 35.0% | |
| TCACTTCTATATCTGTTGGT+TGG | + | chr5_1:11172062-11172081 | Msa0717390:CDS | 35.0% | |
| TGAAACTTTCTCAGAACTGA+TGG | + | chr5_1:11172189-11172208 | Msa0717390:CDS | 35.0% | |
| TTTCCTTGAAGTCGAGAAAA+TGG | + | chr5_1:11172216-11172235 | Msa0717390:CDS | 35.0% | |
| ! | AGTTGATACGGTTGATCTTA+AGG | + | chr5_1:11172309-11172328 | Msa0717390:CDS | 35.0% |
| GACGAAAAAATGCAAAGGTT+AGG | + | chr5_1:11172589-11172608 | Msa0717390:intron | 35.0% | |
| GCTATCATATTGTTGCCAAT+GGG | - | chr5_1:11172615-11172634 | None:intergenic | 35.0% | |
| AGCTATCATATTGTTGCCAA+TGG | - | chr5_1:11172616-11172635 | None:intergenic | 35.0% | |
| TAACGACATCAATACTCAGA+AGG | + | chr5_1:11172752-11172771 | Msa0717390:CDS | 35.0% | |
| TGAACGCAAAACATGTTTGA+AGG | - | chr5_1:11172851-11172870 | None:intergenic | 35.0% | |
| ! | GGTCTCTTTGTTTAAAATCG+AGG | + | chr5_1:11172897-11172916 | Msa0717390:intron | 35.0% |
| CAACACCTTAATGTCATTAC+AGG | + | chr5_1:11173121-11173140 | Msa0717390:intron | 35.0% | |
| TGTGTCCTGTAATGACATTA+AGG | - | chr5_1:11173129-11173148 | None:intergenic | 35.0% | |
| TCTTCCGTTAAACCGAATTA+TGG | + | chr5_1:11173266-11173285 | Msa0717390:CDS | 35.0% | |
| TCTTCTACTTCTGACATTCA+AGG | + | chr5_1:11173353-11173372 | Msa0717390:CDS | 35.0% | |
| AACTCTCAGTGATACATACA+TGG | - | chr5_1:11173753-11173772 | None:intergenic | 35.0% | |
| ATTTGCAGTGACTGTTTGAA+AGG | + | chr5_1:11173982-11174001 | Msa0717390:three_prime_UTR | 35.0% | |
| TCAAGTGGCATATATTTGCA+AGG | + | chr5_1:11174012-11174031 | Msa0717390:three_prime_UTR | 35.0% | |
| GCAACGACATTTCAGATTGA+AGG | - | chr5_1:11169909-11169928 | None:intergenic | 40.0% | |
| AGTTGCAAGCATTTGATAGG+TGG | + | chr5_1:11169996-11170015 | Msa0717390:intron | 40.0% | |
| ! | AGGGTAGTAGAATTCTGAGA+TGG | + | chr5_1:11170320-11170339 | Msa0717390:intron | 40.0% |
| TAAATGTGCCACAGAAGACA+AGG | - | chr5_1:11170436-11170455 | None:intergenic | 40.0% | |
| TTGTCTTCTGTGGCACATTT+AGG | + | chr5_1:11170435-11170454 | Msa0717390:CDS | 40.0% | |
| GTAGGAGAGGTCAATACAAT+TGG | + | chr5_1:11170993-11171012 | Msa0717390:intron | 40.0% | |
| GGATGTTTGATCACTGAGTT+TGG | - | chr5_1:11171019-11171038 | None:intergenic | 40.0% | |
| GCAGATAAGAACTGTAAAGG+AGG | + | chr5_1:11171265-11171284 | Msa0717390:CDS | 40.0% | |
| ! | GGCAATAGTCTTAACATCCT+CGG | - | chr5_1:11171648-11171667 | None:intergenic | 40.0% |
| TGTTAAGACTATTGCCTTGC+TGG | + | chr5_1:11171652-11171671 | Msa0717390:CDS | 40.0% | |
| ! | GGCCAGTAGTTTTTCTTTGA+TGG | - | chr5_1:11171790-11171809 | None:intergenic | 40.0% |
| ATGCTGAATTACAGGCTTCT+AGG | + | chr5_1:11171894-11171913 | Msa0717390:CDS | 40.0% | |
| TGCTGAATTACAGGCTTCTA+GGG | + | chr5_1:11171895-11171914 | Msa0717390:CDS | 40.0% | |
| ACTTAAGAGCTTAGAAGCAG+AGG | + | chr5_1:11171943-11171962 | Msa0717390:CDS | 40.0% | |
| ! | TATATCTGTTGGTTGGCACA+AGG | + | chr5_1:11172069-11172088 | Msa0717390:CDS | 40.0% |
| ! | TCCTCAGTTTCTGACCATTT+TGG | + | chr5_1:11172121-11172140 | Msa0717390:CDS | 40.0% |
| ACCAAAATGGTCAGAAACTG+AGG | - | chr5_1:11172125-11172144 | None:intergenic | 40.0% | |
| !!! | ATGCCATTTTCTCGACTTCA+AGG | - | chr5_1:11172222-11172241 | None:intergenic | 40.0% |
| GCTAAAGAATGATCTCGAAG+AGG | + | chr5_1:11172522-11172541 | Msa0717390:CDS | 40.0% | |
| GTCATCACGATTCTTTAGTG+AGG | + | chr5_1:11172554-11172573 | Msa0717390:CDS | 40.0% | |
| ! | TCTTTCTGTTTGCCACTTGA+AGG | + | chr5_1:11172691-11172710 | Msa0717390:intron | 40.0% |
| ! | CTTTCTGTTTGCCACTTGAA+GGG | + | chr5_1:11172692-11172711 | Msa0717390:intron | 40.0% |
| !! | GAGCTGTTTCTAGTTGATGT+TGG | - | chr5_1:11173041-11173060 | None:intergenic | 40.0% |
| ATGTAGTGTCTCCTGACATT+CGG | - | chr5_1:11173180-11173199 | None:intergenic | 40.0% | |
| AGACACTACATGTACTTGGT+AGG | + | chr5_1:11173189-11173208 | Msa0717390:CDS | 40.0% | |
| CCAGCCATAATTCGGTTTAA+CGG | - | chr5_1:11173273-11173292 | None:intergenic | 40.0% | |
| GAATTCGACCAGCCATAATT+CGG | - | chr5_1:11173281-11173300 | None:intergenic | 40.0% | |
| ! | TATGGCTGGTCGAATTCTAA+TGG | + | chr5_1:11173284-11173303 | Msa0717390:CDS | 40.0% |
| TGGTTCCACATCATGTCTTT+CGG | + | chr5_1:11173409-11173428 | Msa0717390:CDS | 40.0% | |
| ! | ATGTGAATTTTGCTTCCCTG+TGG | - | chr5_1:11173528-11173547 | None:intergenic | 40.0% |
| ACAGGGAAGCAAAATTCACA+TGG | + | chr5_1:11173527-11173546 | Msa0717390:CDS | 40.0% | |
| TATGTACAGCATCATCGATG+AGG | - | chr5_1:11173629-11173648 | None:intergenic | 40.0% | |
| TTCTACTAGGCAGTTAACCA+TGG | + | chr5_1:11173865-11173884 | Msa0717390:three_prime_UTR | 40.0% | |
| ! | GTCATCTAGGTTTTCAACCA+TGG | - | chr5_1:11173885-11173904 | None:intergenic | 40.0% |
| TAACTGAAGAGAGAGAGGAG+CGG | - | chr5_1:11169494-11169513 | None:intergenic | 45.0% | |
| ! | AGTTTAGGGTACAACTGGCA+AGG | + | chr5_1:11169934-11169953 | Msa0717390:intron | 45.0% |
| ACAGAGTCAGGCGTAACAAA+TGG | - | chr5_1:11170405-11170424 | None:intergenic | 45.0% | |
| TTTGTTACGCCTGACTCTGT+TGG | + | chr5_1:11170405-11170424 | Msa0717390:CDS | 45.0% | |
| TGTGGCACATTTAGGAAACC+AGG | + | chr5_1:11170443-11170462 | Msa0717390:CDS | 45.0% | |
| ACAACATGCAAAAGTTGCCG+AGG | + | chr5_1:11170731-11170750 | Msa0717390:CDS | 45.0% | |
| TATTGACCTCTCCTACTGCA+GGG | - | chr5_1:11170989-11171008 | None:intergenic | 45.0% | |
| !!! | ATGCCTTTTAGGTTGGGAGA+AGG | + | chr5_1:11171130-11171149 | Msa0717390:intron | 45.0% |
| CTCTAACTCGGACTCAACTT+CGG | - | chr5_1:11171480-11171499 | None:intergenic | 45.0% | |
| TAAGACTATTGCCTTGCTGG+AGG | + | chr5_1:11171655-11171674 | Msa0717390:CDS | 45.0% | |
| AAGACTATTGCCTTGCTGGA+GGG | + | chr5_1:11171656-11171675 | Msa0717390:CDS | 45.0% | |
| TAAGAACCTCGGATTCTTGC+AGG | - | chr5_1:11171811-11171830 | None:intergenic | 45.0% | |
| AGTGACTCAACAGGACTTTC+TGG | - | chr5_1:11172097-11172116 | None:intergenic | 45.0% | |
| AGTGGAACATGAACAGCTTC+TGG | + | chr5_1:11172348-11172367 | Msa0717390:CDS | 45.0% | |
| AATGCAAAGGTTAGGCCCAT+TGG | + | chr5_1:11172597-11172616 | Msa0717390:intron | 45.0% | |
| GAAAAAGCTAGCCGAATGTC+AGG | + | chr5_1:11173166-11173185 | Msa0717390:CDS | 45.0% | |
| CAGGAGACACTACATGTACT+TGG | + | chr5_1:11173185-11173204 | Msa0717390:CDS | 45.0% | |
| !! | ACCTTCTGGAGTCAGTTTGT+GGG | - | chr5_1:11173232-11173251 | None:intergenic | 45.0% |
| !! | AACCTTCTGGAGTCAGTTTG+TGG | - | chr5_1:11173233-11173252 | None:intergenic | 45.0% |
| CCGTTAAACCGAATTATGGC+TGG | + | chr5_1:11173270-11173289 | Msa0717390:CDS | 45.0% | |
| CAGTGAGCATGTAACAACTC+TGG | - | chr5_1:11173478-11173497 | None:intergenic | 45.0% | |
| TTGAAAGGCGAAGACTCAAG+TGG | + | chr5_1:11173997-11174016 | Msa0717390:three_prime_UTR | 45.0% | |
| !!! | TTTTCTTTTTTTTAAAAAAA+GGG | - | chr5_1:11170042-11170061 | None:intergenic | 5.0% |
| AACTGAAGAGAGAGAGGAGC+GGG | - | chr5_1:11169493-11169512 | None:intergenic | 50.0% | |
| TAGCAATACGTCTCCGACAC+TGG | + | chr5_1:11169876-11169895 | Msa0717390:intron | 50.0% | |
| ! | TGAAGGTGTGTCTCCAGTGT+CGG | - | chr5_1:11169892-11169911 | None:intergenic | 50.0% |
| AGGGTACAACTGGCAAGGAA+AGG | + | chr5_1:11169939-11169958 | Msa0717390:intron | 50.0% | |
| !! | AATTCTGAGATGGACCGTCG+AGG | + | chr5_1:11170330-11170349 | Msa0717390:exon | 50.0% |
| AAGGTGGAACCAACAGAGTC+AGG | - | chr5_1:11170417-11170436 | None:intergenic | 50.0% | |
| TGGTTCCACCTTGTCTTCTG+TGG | + | chr5_1:11170425-11170444 | Msa0717390:CDS | 50.0% | |
| ATGTGCCACAGAAGACAAGG+TGG | - | chr5_1:11170433-11170452 | None:intergenic | 50.0% | |
| ATACGCGCGTATGTCTGGAT+TGG | + | chr5_1:11170611-11170630 | Msa0717390:CDS | 50.0% | |
| ! | GTATTGACCTCTCCTACTGC+AGG | - | chr5_1:11170990-11171009 | None:intergenic | 50.0% |
| CAGCCTTCTCCCAACCTAAA+AGG | - | chr5_1:11171136-11171155 | None:intergenic | 50.0% | |
| CTGTTGCGAAAGAAGTTGCC+TGG | + | chr5_1:11171701-11171720 | Msa0717390:CDS | 50.0% | |
| TTCATTTGCGCCAATGCAGC+AGG | - | chr5_1:11171728-11171747 | None:intergenic | 50.0% | |
| ! | GATGGATTCCACTGATGACG+TGG | - | chr5_1:11171772-11171791 | None:intergenic | 50.0% |
| GAGGATGCAAGTGACTCAAC+AGG | - | chr5_1:11172106-11172125 | None:intergenic | 50.0% | |
| CAGACACTTGTCCCTTCAAG+TGG | - | chr5_1:11172706-11172725 | None:intergenic | 50.0% | |
| CACTTGAAGGGACAAGTGTC+TGG | + | chr5_1:11172704-11172723 | Msa0717390:intron | 50.0% | |
| TCTGGTGTGTGCAGCGAATT+CGG | + | chr5_1:11172722-11172741 | Msa0717390:CDS | 50.0% | |
| GGTGTCCGAAAGACATGATG+TGG | - | chr5_1:11173417-11173436 | None:intergenic | 50.0% | |
| TCATGTCTTTCGGACACCGA+AGG | + | chr5_1:11173419-11173438 | Msa0717390:CDS | 50.0% | |
| ATCCTTCTGCTTCTGCCACA+GGG | + | chr5_1:11173510-11173529 | Msa0717390:CDS | 50.0% | |
| TGGCCAAATGTGAGCGTGTG+TGG | - | chr5_1:11169469-11169488 | None:intergenic | 55.0% | |
| ACTGAAGAGAGAGAGGAGCG+GGG | - | chr5_1:11169492-11169511 | None:intergenic | 55.0% | |
| GAGTCATACGCGCGTATGTC+TGG | + | chr5_1:11170606-11170625 | Msa0717390:CDS | 55.0% | |
| GCTACCTGAGACTGCTTCCT+CGG | - | chr5_1:11170751-11170770 | None:intergenic | 55.0% | |
| AGGTTGGGAGAAGGCTGATG+CGG | + | chr5_1:11171139-11171158 | Msa0717390:intron | 55.0% | |
| GGCAAACAAACGACACACCG+AGG | + | chr5_1:11171628-11171647 | Msa0717390:CDS | 55.0% | |
| AGTACACGCCACGTCATCAG+TGG | + | chr5_1:11171761-11171780 | Msa0717390:CDS | 55.0% | |
| ! | TACTGGCCTGCAAGAATCCG+AGG | + | chr5_1:11171802-11171821 | Msa0717390:CDS | 55.0% |
| ! | GCCCACAAACTGACTCCAGA+AGG | + | chr5_1:11173228-11173247 | Msa0717390:CDS | 55.0% |
| CATCCTTCTGCTTCTGCCAC+AGG | + | chr5_1:11173509-11173528 | Msa0717390:CDS | 55.0% | |
| TTCCCTGTGGCAGAAGCAGA+AGG | - | chr5_1:11173515-11173534 | None:intergenic | 55.0% | |
| CTGAGATGGACCGTCGAGGT+TGG | + | chr5_1:11170334-11170353 | Msa0717390:exon | 60.0% | |
| TCTTCCACGGCCAACCTCGA+CGG | - | chr5_1:11170347-11170366 | None:intergenic | 60.0% | |
| GTTGCCGAGGAAGCAGTCTC+AGG | + | chr5_1:11170744-11170763 | Msa0717390:CDS | 60.0% | |
| TACTGCAGTCGCCCTGCAGT+AGG | + | chr5_1:11170975-11170994 | Msa0717390:intron | 60.0% | |
| GCAACAGACCACGAAGCCGA+TGG | - | chr5_1:11171688-11171707 | None:intergenic | 60.0% | |
| GTTGCCTGGTCCTGCTGCAT+TGG | + | chr5_1:11171715-11171734 | Msa0717390:CDS | 60.0% | |
| GAAGAGAGAGAGGAGCGGGG+TGG | - | chr5_1:11169489-11169508 | None:intergenic | 65.0% | |
| CAGTCGCCCTGCAGTAGGAG+AGG | + | chr5_1:11170980-11170999 | Msa0717390:intron | 65.0% | |
| ATGGCACTCGCCCTCCAGCA+AGG | - | chr5_1:11171669-11171688 | None:intergenic | 65.0% | |
| TGCTGGAGGGCGAGTGCCAT+CGG | + | chr5_1:11171669-11171688 | Msa0717390:CDS | 65.0% | |
| TGCGCCAATGCAGCAGGACC+AGG | - | chr5_1:11171722-11171741 | None:intergenic | 65.0% | |
| ! | TGGACCGTCGAGGTTGGCCG+TGG | + | chr5_1:11170340-11170359 | Msa0717390:CDS | 70.0% |
| !! | GGCGAGTGCCATCGGCTTCG+TGG | + | chr5_1:11171677-11171696 | Msa0717390:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 11169466 | 11174090 | 11169466 | ID=Msa0717390;Name=Msa0717390 |
| chr5_1 | mRNA | 11169466 | 11174090 | 11169466 | ID=Msa0717390-mRNA-1;Parent=Msa0717390;Name=Msa0717390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=200|1|1|1|0.57|0.37|8|412|767 |
| chr5_1 | exon | 11169466 | 11169648 | 11169466 | ID=Msa0717390-mRNA-1:exon:4561;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11170322 | 11170464 | 11170322 | ID=Msa0717390-mRNA-1:exon:4562;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11170564 | 11170765 | 11170564 | ID=Msa0717390-mRNA-1:exon:4563;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11171141 | 11172605 | 11171141 | ID=Msa0717390-mRNA-1:exon:4564;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11172713 | 11172773 | 11172713 | ID=Msa0717390-mRNA-1:exon:4565;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11173143 | 11173820 | 11173143 | ID=Msa0717390-mRNA-1:exon:4566;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11173850 | 11173909 | 11173850 | ID=Msa0717390-mRNA-1:exon:4567;Parent=Msa0717390-mRNA-1 |
| chr5_1 | exon | 11173967 | 11174090 | 11173967 | ID=Msa0717390-mRNA-1:exon:4568;Parent=Msa0717390-mRNA-1 |
| chr5_1 | five_prime_UTR | 11169466 | 11169648 | 11169466 | ID=Msa0717390-mRNA-1:five_prime_utr;Parent=Msa0717390-mRNA-1 |
| chr5_1 | five_prime_UTR | 11170322 | 11170338 | 11170322 | ID=Msa0717390-mRNA-1:five_prime_utr;Parent=Msa0717390-mRNA-1 |
| chr5_1 | CDS | 11170339 | 11170464 | 11170339 | ID=Msa0717390-mRNA-1:cds;Parent=Msa0717390-mRNA-1 |
| chr5_1 | CDS | 11170564 | 11170765 | 11170564 | ID=Msa0717390-mRNA-1:cds;Parent=Msa0717390-mRNA-1 |
| chr5_1 | CDS | 11171141 | 11172605 | 11171141 | ID=Msa0717390-mRNA-1:cds;Parent=Msa0717390-mRNA-1 |
| chr5_1 | CDS | 11172713 | 11172773 | 11172713 | ID=Msa0717390-mRNA-1:cds;Parent=Msa0717390-mRNA-1 |
| chr5_1 | CDS | 11173143 | 11173592 | 11173143 | ID=Msa0717390-mRNA-1:cds;Parent=Msa0717390-mRNA-1 |
| chr5_1 | three_prime_UTR | 11173593 | 11173820 | 11173593 | ID=Msa0717390-mRNA-1:three_prime_utr;Parent=Msa0717390-mRNA-1 |
| chr5_1 | three_prime_UTR | 11173850 | 11173909 | 11173850 | ID=Msa0717390-mRNA-1:three_prime_utr;Parent=Msa0717390-mRNA-1 |
| chr5_1 | three_prime_UTR | 11173967 | 11174090 | 11173967 | ID=Msa0717390-mRNA-1:three_prime_utr;Parent=Msa0717390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
