Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758430 | sp|O65649|FPP5_ARATH | 49.130 | 517 | 213 | 10 | 1 | 482 | 1 | 502 | 7.29e-138 | 435 |
| Msa0758430 | sp|O65649|FPP5_ARATH | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 7.19e-18 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758430 | A0A072UD75 | 95.437 | 767 | 35 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717390 | Msa0758430 | 0.889357 | 2.604509e-73 | -8.615850e-47 |
| Msa0480320 | Msa0758430 | 0.800065 | 1.716443e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758430 | MtrunA17_Chr5g0405291 | 95.306 | 767 | 35 | 1 | 1 | 767 | 1 | 766 | 0.0 | 1423 |
| Msa0758430 | MtrunA17_Chr3g0142411 | 46.208 | 567 | 234 | 9 | 1 | 509 | 1 | 554 | 4.74e-132 | 419 |
| Msa0758430 | MtrunA17_Chr3g0142411 | 37.363 | 273 | 151 | 6 | 499 | 767 | 840 | 1096 | 8.38e-26 | 114 |
| Msa0758430 | MtrunA17_Chr1g0156371 | 48.141 | 538 | 234 | 9 | 1 | 503 | 1 | 528 | 5.73e-132 | 418 |
| Msa0758430 | MtrunA17_Chr1g0156371 | 34.266 | 286 | 142 | 6 | 503 | 767 | 821 | 1081 | 2.19e-31 | 132 |
| Msa0758430 | MtrunA17_Chr4g0053121 | 34.406 | 497 | 260 | 9 | 1 | 479 | 1 | 449 | 5.93e-56 | 207 |
| Msa0758430 | MtrunA17_Chr8g0384881 | 34.494 | 316 | 148 | 7 | 1 | 300 | 1 | 273 | 6.00e-39 | 153 |
| Msa0758430 | MtrunA17_Chr1g0159951 | 38.839 | 224 | 112 | 3 | 77 | 300 | 145 | 343 | 1.80e-35 | 144 |
| Msa0758430 | MtrunA17_Chr3g0130811 | 38.326 | 227 | 117 | 4 | 74 | 300 | 54 | 257 | 1.73e-30 | 128 |
| Msa0758430 | MtrunA17_Chr5g0401911 | 35.789 | 190 | 122 | 0 | 72 | 261 | 43 | 232 | 1.00e-26 | 117 |
| Msa0758430 | MtrunA17_Chr4g0044561 | 27.763 | 371 | 223 | 8 | 137 | 479 | 80 | 433 | 6.17e-21 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758430 | AT4G36120.2 | 49.130 | 517 | 213 | 10 | 1 | 482 | 1 | 502 | 7.41e-139 | 435 |
| Msa0758430 | AT4G36120.2 | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 7.31e-19 | 92.4 |
| Msa0758430 | AT4G36120.1 | 49.130 | 517 | 213 | 10 | 1 | 482 | 1 | 502 | 7.41e-139 | 435 |
| Msa0758430 | AT4G36120.1 | 44.094 | 127 | 65 | 2 | 512 | 637 | 775 | 896 | 7.31e-19 | 92.4 |
| Msa0758430 | AT1G19835.6 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.6 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G19835.5 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.5 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G19835.3 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.3 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G19835.1 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.1 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G19835.4 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.4 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G19835.2 | 45.349 | 516 | 215 | 8 | 1 | 477 | 1 | 488 | 1.08e-123 | 394 |
| Msa0758430 | AT1G19835.2 | 46.358 | 151 | 76 | 2 | 503 | 651 | 750 | 897 | 8.01e-23 | 105 |
| Msa0758430 | AT1G47900.2 | 40.391 | 562 | 222 | 11 | 1 | 477 | 1 | 534 | 5.52e-103 | 340 |
| Msa0758430 | AT1G47900.2 | 37.023 | 262 | 145 | 4 | 502 | 762 | 807 | 1049 | 1.81e-30 | 129 |
| Msa0758430 | AT1G47900.3 | 40.391 | 562 | 222 | 11 | 1 | 477 | 1 | 534 | 7.77e-103 | 340 |
| Msa0758430 | AT1G47900.3 | 36.260 | 262 | 149 | 3 | 502 | 762 | 807 | 1051 | 4.21e-30 | 128 |
| Msa0758430 | AT1G47900.1 | 40.391 | 562 | 222 | 11 | 1 | 477 | 1 | 534 | 7.77e-103 | 340 |
| Msa0758430 | AT1G47900.1 | 36.260 | 262 | 149 | 3 | 502 | 762 | 807 | 1051 | 4.21e-30 | 128 |
| Msa0758430 | AT2G23360.1 | 33.472 | 481 | 256 | 9 | 1 | 476 | 1 | 422 | 1.04e-52 | 197 |
| Msa0758430 | AT1G77580.2 | 35.268 | 224 | 110 | 3 | 76 | 299 | 62 | 250 | 1.62e-28 | 122 |
| Msa0758430 | AT1G77580.3 | 35.268 | 224 | 110 | 3 | 76 | 299 | 62 | 250 | 1.62e-28 | 122 |
| Msa0758430 | AT1G77580.4 | 35.268 | 224 | 110 | 3 | 76 | 299 | 28 | 216 | 1.81e-28 | 122 |
| Msa0758430 | AT1G77580.1 | 35.586 | 222 | 108 | 3 | 76 | 297 | 28 | 214 | 2.42e-28 | 121 |
| Msa0758430 | AT2G24470.1 | 46.667 | 75 | 40 | 0 | 155 | 229 | 14 | 88 | 6.87e-13 | 65.5 |
| Msa0758430 | AT3G19370.3 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.35e-11 | 67.4 |
| Msa0758430 | AT3G19370.1 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.35e-11 | 67.4 |
| Msa0758430 | AT3G19370.2 | 39.252 | 107 | 65 | 0 | 197 | 303 | 156 | 262 | 3.35e-11 | 67.4 |
Find 134 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGCCAAATTTGATTTC+TGG | 0.170930 | 5_2:-13719406 | None:intergenic |
| ATTAGATAACAAGGAAAATT+TGG | 0.179855 | 5_2:+13718116 | Msa0758430:CDS |
| TTCAAATTCAAATTCATTCT+TGG | 0.202577 | 5_2:+13716954 | Msa0758430:five_prime_UTR |
| TCCTCAGTTTCTGACCATTT+TGG | 0.210971 | 5_2:+13719533 | Msa0758430:CDS |
| TTGTCTTCTGTGGCACATTT+AGG | 0.226755 | 5_2:+13717847 | Msa0758430:CDS |
| TTACACAACCAGCTAAATTT+TGG | 0.226776 | 5_2:-13721187 | None:intergenic |
| TCTTCCGTTAAACCAAATTA+TGG | 0.252798 | 5_2:+13720678 | Msa0758430:CDS |
| CAAATTTGGCAATCAATTAT+AGG | 0.262887 | 5_2:+13719414 | Msa0758430:CDS |
| AATAGGATCGATACAAAATT+AGG | 0.268768 | 5_2:-13721465 | None:intergenic |
| GAATTCGACCAGCCATAATT+TGG | 0.274385 | 5_2:-13720690 | None:intergenic |
| AGTGACTCAACAGGACTTTC+TGG | 0.280320 | 5_2:-13719506 | None:intergenic |
| TGAAGCAGAAATAGACAAAT+TGG | 0.281556 | 5_2:+13718770 | Msa0758430:CDS |
| CTCAAGTAATGCTGAATTAC+AGG | 0.295183 | 5_2:+13719298 | Msa0758430:CDS |
| TTTCCTTGAAGTCGAGAAAA+TGG | 0.296472 | 5_2:+13719628 | Msa0758430:CDS |
| TGTAAAACTTATCATAAAAT+AGG | 0.301469 | 5_2:+13721205 | Msa0758430:three_prime_UTR |
| TTTCATGAAGTGATCTTAGA+AGG | 0.305503 | 5_2:-13718830 | None:intergenic |
| AAGTTCCCAGAAATCAAATT+TGG | 0.309002 | 5_2:+13719400 | Msa0758430:CDS |
| AGTGGAACATGAACAGCTTC+TGG | 0.309011 | 5_2:+13719760 | Msa0758430:CDS |
| ATAGAGAATTTGATTATAAT+AGG | 0.312601 | 5_2:-13721482 | None:intergenic |
| TAAGAACCTCGGATTCTTGC+AGG | 0.313131 | 5_2:-13719220 | None:intergenic |
| ATGCTGAATTACAGGCTTCT+AGG | 0.314143 | 5_2:+13719306 | Msa0758430:CDS |
| GATTGCCAAATTTGATTTCT+GGG | 0.327586 | 5_2:-13719405 | None:intergenic |
| TCATGTTCTTCTCTTCATTT+CGG | 0.328218 | 5_2:-13718998 | None:intergenic |
| AGTTGATACGGTTGATCTTA+AGG | 0.333585 | 5_2:+13719721 | Msa0758430:CDS |
| GAGTCATACGCGCGTATGTC+TGG | 0.339411 | 5_2:+13718018 | Msa0758430:CDS |
| TGTTAAGACTATTGCCTTGC+TGG | 0.341542 | 5_2:+13719064 | Msa0758430:CDS |
| AGATTCAAGTTGACATCTTA+AGG | 0.343122 | 5_2:-13718583 | None:intergenic |
| CGAGGTTCTTACAAAACAAT+TGG | 0.354334 | 5_2:+13719232 | Msa0758430:CDS |
| TAACTCTACTGTTACCAAAA+TGG | 0.357385 | 5_2:-13719547 | None:intergenic |
| GGAGAGTCAAGTAAAAGATT+TGG | 0.364040 | 5_2:+13718065 | Msa0758430:CDS |
| AAAGAGATTGAAAGAAGCTT+TGG | 0.377766 | 5_2:+13719274 | Msa0758430:CDS |
| CTTAAGTCTGTTAACTGTCT+TGG | 0.381509 | 5_2:-13719339 | None:intergenic |
| TGGTTCCACATCATGTCTTT+CGG | 0.389770 | 5_2:+13720821 | Msa0758430:CDS |
| ATCAATTTCATCTGAGGTAT+AGG | 0.389932 | 5_2:-13720721 | None:intergenic |
| GAAATAGACAAATTGGATAA+AGG | 0.390339 | 5_2:+13718777 | Msa0758430:CDS |
| GAACTTTGTTCAAATTTCAA+TGG | 0.398986 | 5_2:+13717996 | Msa0758430:CDS |
| CCAGCCATAATTTGGTTTAA+CGG | 0.399781 | 5_2:-13720682 | None:intergenic |
| CATCCTTCTGCTTCTGCCAC+AGG | 0.404620 | 5_2:+13720921 | Msa0758430:CDS |
| TAAACTACTCTTAGTCATCT+AGG | 0.405776 | 5_2:-13721307 | None:intergenic |
| TCTGGTGTGTGCAGCGAATT+CGG | 0.413103 | 5_2:+13720134 | Msa0758430:CDS |
| TGATACATACATGGAATAGA+AGG | 0.417989 | 5_2:-13721153 | None:intergenic |
| GAAAGAATAGCTCACTTAGA+TGG | 0.420093 | 5_2:+13718633 | Msa0758430:CDS |
| TGAGCTGCATATGATTTCTA+AGG | 0.421186 | 5_2:+13718965 | Msa0758430:CDS |
| GTTGCCTGGTCCTGCTGCAT+TGG | 0.431761 | 5_2:+13719127 | Msa0758430:CDS |
| TATGGCTGGTCGAATTCTAA+TGG | 0.432392 | 5_2:+13720696 | Msa0758430:CDS |
| TTCATTTGCGCCAATGCAGC+AGG | 0.437784 | 5_2:-13719137 | None:intergenic |
| CTCTCTCTTCAGTACTAATA+CGG | 0.455077 | 5_2:+13716916 | Msa0758430:five_prime_UTR |
| TGCTGGAGGGCGAGTGCCAT+CGG | 0.456284 | 5_2:+13719081 | Msa0758430:CDS |
| GTTGCCGAGGAAGCAGTCTC+AGG | 0.459306 | 5_2:+13718156 | Msa0758430:CDS |
| TCTTCTACTTCTGACATTCA+AGG | 0.461027 | 5_2:+13720765 | Msa0758430:CDS |
| AGAGTTTACCAAAATTTAGC+TGG | 0.467672 | 5_2:+13721179 | Msa0758430:three_prime_UTR |
| GGCGAGTGCCATCGGCTTCG+TGG | 0.475066 | 5_2:+13719089 | Msa0758430:CDS |
| AATCTTCTAGAGTCAGTTTG+TGG | 0.481596 | 5_2:-13720642 | None:intergenic |
| AAGGTGGAACCAACAGAGTC+AGG | 0.484062 | 5_2:-13717826 | None:intergenic |
| TGAAACTTTCTCAGAACTGA+TGG | 0.487429 | 5_2:+13719601 | Msa0758430:CDS |
| GAGGATGCAAGTGACTCAAC+AGG | 0.490574 | 5_2:-13719515 | None:intergenic |
| CACTTGAAGGGACAAGTGTC+TGG | 0.494043 | 5_2:+13720116 | Msa0758430:intron |
| AGTGAGGCACAAAGATATTG+AGG | 0.500234 | 5_2:+13719982 | Msa0758430:CDS |
| ATCAACTGATTGTTTATCTA+CGG | 0.503170 | 5_2:-13719705 | None:intergenic |
| TATTCAATAGTGTTTCTACT+AGG | 0.503479 | 5_2:+13721264 | Msa0758430:three_prime_UTR |
| CAGGAGACACTACATGTACT+TGG | 0.510644 | 5_2:+13720597 | Msa0758430:CDS |
| TGGACCGTCGAGGTTGGCCG+TGG | 0.511395 | 5_2:+13717752 | Msa0758430:CDS |
| AGCTGAAAATAAGTTTCTAA+AGG | 0.517893 | 5_2:+13719898 | Msa0758430:CDS |
| CCGTTAAACCAAATTATGGC+TGG | 0.519979 | 5_2:+13720682 | Msa0758430:CDS |
| GAAGCAGATAAGAACTGTAA+AGG | 0.520863 | 5_2:+13718674 | Msa0758430:CDS |
| ATGTAGTGTCTCCTGACATT+CGG | 0.520934 | 5_2:-13720589 | None:intergenic |
| TGCGCCAATGCAGCAGGACC+AGG | 0.522465 | 5_2:-13719131 | None:intergenic |
| GCATATGATTTCTAAGGAGA+TGG | 0.522681 | 5_2:+13718971 | Msa0758430:CDS |
| ATCTTCTAGAGTCAGTTTGT+GGG | 0.527364 | 5_2:-13720641 | None:intergenic |
| ACAGAGTCAGGTGTAACAAA+TGG | 0.532607 | 5_2:-13717814 | None:intergenic |
| ATTTGCAGTGACTGTTTGAA+AGG | 0.533812 | 5_2:+13721394 | Msa0758430:three_prime_UTR |
| TGGTTCCACCTTGTCTTCTG+TGG | 0.533953 | 5_2:+13717837 | Msa0758430:CDS |
| GATTATGAAATCAGCAGAAG+TGG | 0.539890 | 5_2:+13719019 | Msa0758430:CDS |
| CTGAGATGGACCGTCGAGGT+TGG | 0.540820 | 5_2:+13717746 | Msa0758430:exon |
| TTTGTTAACAATTTGCACAC+TGG | 0.543817 | 5_2:-13719669 | None:intergenic |
| AGCATCACTTCTATATCTGT+TGG | 0.546571 | 5_2:+13719470 | Msa0758430:CDS |
| GGCAATAGTCTTAACATCCT+CGG | 0.547132 | 5_2:-13719057 | None:intergenic |
| ATACGCGCGTATGTCTGGAT+TGG | 0.550301 | 5_2:+13718023 | Msa0758430:CDS |
| GTCTCATAAATCATACAACT+TGG | 0.550887 | 5_2:+13719808 | Msa0758430:CDS |
| ACAAGAATGAATCTGAGTGA+TGG | 0.555435 | 5_2:-13717028 | None:intergenic |
| TTTGTTACACCTGACTCTGT+TGG | 0.559675 | 5_2:+13717817 | Msa0758430:CDS |
| TCACTTCTATATCTGTTGGT+TGG | 0.563147 | 5_2:+13719474 | Msa0758430:CDS |
| GGTTCTTACAAAACAATTGG+AGG | 0.563650 | 5_2:+13719235 | Msa0758430:CDS |
| AGATAAACAATCAGTTGATA+CGG | 0.567751 | 5_2:+13719709 | Msa0758430:CDS |
| TCTTCCACGGCCAACCTCGA+CGG | 0.568224 | 5_2:-13717756 | None:intergenic |
| AAGACTATTGCCTTGCTGGA+GGG | 0.568532 | 5_2:+13719068 | Msa0758430:CDS |
| CAGTGAGCATGTAACAACTC+TGG | 0.569368 | 5_2:-13720887 | None:intergenic |
| TTCATGAAGTGATCTTAGAA+GGG | 0.570828 | 5_2:-13718829 | None:intergenic |
| CTCTAACTCGGACTCAACTT+CGG | 0.571607 | 5_2:-13718889 | None:intergenic |
| TATCTAAGTTCAATATACTC+AGG | 0.572122 | 5_2:-13721110 | None:intergenic |
| ATCCTTCTGCTTCTGCCACA+GGG | 0.573900 | 5_2:+13720922 | Msa0758430:CDS |
| AGACACTACATGTACTTGGT+AGG | 0.574448 | 5_2:+13720601 | Msa0758430:CDS |
| AACTCTCAGTGATACATACA+TGG | 0.579315 | 5_2:-13721162 | None:intergenic |
| ATGGCACTCGCCCTCCAGCA+AGG | 0.580845 | 5_2:-13719078 | None:intergenic |
| CTGTTGCGAAAGAAGTTGCC+TGG | 0.581038 | 5_2:+13719113 | Msa0758430:CDS |
| ACCAAAATGGTCAGAAACTG+AGG | 0.581504 | 5_2:-13719534 | None:intergenic |
| ACTTAAGAGCTTAGAAGCAG+AGG | 0.584151 | 5_2:+13719355 | Msa0758430:CDS |
| TATATCTGTTGGTTGGCACA+AGG | 0.584257 | 5_2:+13719481 | Msa0758430:CDS |
| AGTATGATCAATTTCATCTG+AGG | 0.586679 | 5_2:-13720727 | None:intergenic |
| GCTACCTGAGACTGCTTCCT+CGG | 0.588059 | 5_2:-13718160 | None:intergenic |
| GGTGTCCGAAAGACATGATG+TGG | 0.596990 | 5_2:-13720826 | None:intergenic |
| TCTTATGAAATCTCAACAGT+GGG | 0.600638 | 5_2:+13718728 | Msa0758430:CDS |
| TAAGACTATTGCCTTGCTGG+AGG | 0.600745 | 5_2:+13719067 | Msa0758430:CDS |
| TACTGGCCTGCAAGAATCCG+AGG | 0.602204 | 5_2:+13719214 | Msa0758430:CDS |
| TTCCCTGTGGCAGAAGCAGA+AGG | 0.604547 | 5_2:-13720924 | None:intergenic |
| AGTACACGCCACGTCATCAG+TGG | 0.606427 | 5_2:+13719173 | Msa0758430:CDS |
| TAAATGTGCCACAGAAGACA+AGG | 0.607466 | 5_2:-13717845 | None:intergenic |
| TTCTACTAGGCAGTTAACCA+TGG | 0.610434 | 5_2:+13721277 | Msa0758430:three_prime_UTR |
| GATACATACATGGAATAGAA+GGG | 0.614461 | 5_2:-13721152 | None:intergenic |
| TTATTCAGAATTAGATAACA+AGG | 0.616105 | 5_2:+13718107 | Msa0758430:CDS |
| TAACGACATCAATACTCAGA+AGG | 0.617368 | 5_2:+13720164 | Msa0758430:CDS |
| TCAAGTGGCATATATTTGCA+AGG | 0.628295 | 5_2:+13721424 | Msa0758430:three_prime_UTR |
| GCAGATAAGAACTGTAAAGG+AGG | 0.629079 | 5_2:+13718677 | Msa0758430:CDS |
| TGTGGCACATTTAGGAAACC+AGG | 0.634001 | 5_2:+13717855 | Msa0758430:CDS |
| GGAAGATCAAGTTGTAAACA+TGG | 0.635524 | 5_2:+13718044 | Msa0758430:CDS |
| AAGTGAGCAGAAAATACAAG+AGG | 0.635994 | 5_2:+13718701 | Msa0758430:CDS |
| GTCATCACGATTCTTTAGTG+AGG | 0.638922 | 5_2:+13719966 | Msa0758430:CDS |
| GCTAAAGAATGATCTCGAAG+AGG | 0.639641 | 5_2:+13719934 | Msa0758430:CDS |
| AGGTTGGGAGAAGGCTGATG+CGG | 0.641496 | 5_2:+13718551 | Msa0758430:intron |
| TCATGTCTTTCGGACACCGA+AGG | 0.647121 | 5_2:+13720831 | Msa0758430:CDS |
| CTGTAATTCAGCATTACTTG+AGG | 0.650113 | 5_2:-13719297 | None:intergenic |
| ACAACATGCAAAAGTTGCCG+AGG | 0.652624 | 5_2:+13718143 | Msa0758430:CDS |
| ATCATCAGACAAAATCACAA+AGG | 0.653952 | 5_2:+13717783 | Msa0758430:CDS |
| TTCTTATGAAATCTCAACAG+TGG | 0.654246 | 5_2:+13718727 | Msa0758430:CDS |
| GCAACAGACCACGAAGCCGA+TGG | 0.654258 | 5_2:-13719097 | None:intergenic |
| GATGGATTCCACTGATGACG+TGG | 0.661086 | 5_2:-13719181 | None:intergenic |
| TTGAAAGGCGAAGACTCAAG+TGG | 0.661820 | 5_2:+13721409 | Msa0758430:three_prime_UTR |
| ACAGGGAAGCAAAATTCACA+TGG | 0.663127 | 5_2:+13720939 | Msa0758430:CDS |
| TATGTACAGCATCATCGATG+AGG | 0.665085 | 5_2:-13721038 | None:intergenic |
| ACAGATATAGAAGTGATGCT+CGG | 0.670258 | 5_2:-13719467 | None:intergenic |
| AGGGTAGTAGAATTCTGAGA+TGG | 0.675085 | 5_2:+13717732 | Msa0758430:intron |
| GGCAAACAAACGACACACCG+AGG | 0.712394 | 5_2:+13719040 | Msa0758430:CDS |
| AATTCTGAGATGGACCGTCG+AGG | 0.716124 | 5_2:+13717742 | Msa0758430:exon |
| ATGTGCCACAGAAGACAAGG+TGG | 0.719107 | 5_2:-13717842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTCTTTTTTTTAAAAAA+AGG | - | chr5_2:13717456-13717475 | None:intergenic | 10.0% |
| !!! | ATCTAATTACTTATATATTT+TGG | + | chr5_2:13720380-13720399 | Msa0758430:intron | 10.0% |
| !! | ATAAATCTAGTTAAACTAAA+AGG | + | chr5_2:13717549-13717568 | Msa0758430:intron | 15.0% |
| !! | GAAATTGATTATACATATAA+TGG | + | chr5_2:13720288-13720307 | Msa0758430:intron | 15.0% |
| !! | TGTAAAACTTATCATAAAAT+AGG | + | chr5_2:13721205-13721224 | Msa0758430:three_prime_UTR | 15.0% |
| !! | TTCAAATTCAAATTCATTCT+TGG | + | chr5_2:13716954-13716973 | Msa0758430:five_prime_UTR | 20.0% |
| !!! | TTTGTCATGTTTTGTAAAAA+TGG | - | chr5_2:13717170-13717189 | None:intergenic | 20.0% |
| !! | TGAAAAAATAAGAAAAGAAC+AGG | - | chr5_2:13717955-13717974 | None:intergenic | 20.0% |
| !! | TTATTCAGAATTAGATAACA+AGG | + | chr5_2:13718107-13718126 | Msa0758430:CDS | 20.0% |
| !! | ATTAGATAACAAGGAAAATT+TGG | + | chr5_2:13718116-13718135 | Msa0758430:CDS | 20.0% |
| !! | GTTCTTAAAAAAAAGTTATG+TGG | - | chr5_2:13718221-13718240 | None:intergenic | 20.0% |
| !! | TTTAAGAACTCATCTATATT+AGG | + | chr5_2:13718232-13718251 | Msa0758430:intron | 20.0% |
| !! | GAACTTGTATTTAAATACTA+CGG | - | chr5_2:13718332-13718351 | None:intergenic | 20.0% |
| !! | TTTAAGCTTGATTAATAGAA+TGG | + | chr5_2:13718364-13718383 | Msa0758430:intron | 20.0% |
| !! | TTTACTAGTACATATCATAT+TGG | + | chr5_2:13720203-13720222 | Msa0758430:intron | 20.0% |
| !! | GACTATAGTAAAAAAAATTG+TGG | + | chr5_2:13721061-13721080 | Msa0758430:three_prime_UTR | 20.0% |
| !!! | AATACTAATCACTTGAATTT+TGG | - | chr5_2:13721377-13721396 | None:intergenic | 20.0% |
| !!! | TTCATTCTTGTTTTTACTTC+TGG | + | chr5_2:13717040-13717059 | Msa0758430:five_prime_UTR | 25.0% |
| ! | TATTTGTGTCTATGTTGTAT+TGG | + | chr5_2:13717265-13717284 | Msa0758430:intron | 25.0% |
| ! | AGAAACAGAAAAACCTTTAT+TGG | + | chr5_2:13717474-13717493 | Msa0758430:intron | 25.0% |
| ! | GAAACAGAAAAACCTTTATT+GGG | + | chr5_2:13717475-13717494 | Msa0758430:intron | 25.0% |
| ! | TTTGTCTTAAATTCTTGTGA+TGG | + | chr5_2:13717887-13717906 | Msa0758430:intron | 25.0% |
| !!! | TCTTTTCTTATTTTTTCAGC+AGG | + | chr5_2:13717957-13717976 | Msa0758430:intron | 25.0% |
| ! | GAACTTTGTTCAAATTTCAA+TGG | + | chr5_2:13717996-13718015 | Msa0758430:CDS | 25.0% |
| ! | AACGTAAATAAAGAACACAT+GGG | - | chr5_2:13718452-13718471 | None:intergenic | 25.0% |
| ! | AAACGTAAATAAAGAACACA+TGG | - | chr5_2:13718453-13718472 | None:intergenic | 25.0% |
| ! | TCTGTTCTAACAGAAAATAT+TGG | + | chr5_2:13718498-13718517 | Msa0758430:intron | 25.0% |
| ! | GAAATAGACAAATTGGATAA+AGG | + | chr5_2:13718777-13718796 | Msa0758430:CDS | 25.0% |
| ! | CAAATTTGGCAATCAATTAT+AGG | + | chr5_2:13719414-13719433 | Msa0758430:CDS | 25.0% |
| ! | ATCAACTGATTGTTTATCTA+CGG | - | chr5_2:13719708-13719727 | None:intergenic | 25.0% |
| !! | AGATAAACAATCAGTTGATA+CGG | + | chr5_2:13719709-13719728 | Msa0758430:CDS | 25.0% |
| ! | AGCTGAAAATAAGTTTCTAA+AGG | + | chr5_2:13719898-13719917 | Msa0758430:CDS | 25.0% |
| ! | ATATTGAGGAAAAAATGCAA+AGG | + | chr5_2:13719996-13720015 | Msa0758430:CDS | 25.0% |
| ! | ATGATTGAACAATGAATTCA+TGG | - | chr5_2:13720506-13720525 | None:intergenic | 25.0% |
| !!! | TTACTTTTAGAAGTATCAGA+GGG | + | chr5_2:13721014-13721033 | Msa0758430:three_prime_UTR | 25.0% |
| ! | TATCTAAGTTCAATATACTC+AGG | - | chr5_2:13721113-13721132 | None:intergenic | 25.0% |
| ! | GAAACACTATTGAATAAAGT+GGG | - | chr5_2:13721260-13721279 | None:intergenic | 25.0% |
| ! | AGAAACACTATTGAATAAAG+TGG | - | chr5_2:13721261-13721280 | None:intergenic | 25.0% |
| !! | TATTCAATAGTGTTTCTACT+AGG | + | chr5_2:13721264-13721283 | Msa0758430:three_prime_UTR | 25.0% |
| ! | AATAGGATCGATACAAAATT+AGG | - | chr5_2:13721468-13721487 | None:intergenic | 25.0% |
| !!! | CAAGGAAAGGCTATTTTTTT+GGG | + | chr5_2:13717365-13717384 | Msa0758430:intron | 30.0% |
| !!! | AAGGAAAGGCTATTTTTTTG+GGG | + | chr5_2:13717366-13717385 | Msa0758430:intron | 30.0% |
| ! | TGCATTTTCATTCCCAATAA+AGG | - | chr5_2:13717490-13717509 | None:intergenic | 30.0% |
| TGCTGTCATGAAATATTGAT+TGG | + | chr5_2:13717526-13717545 | Msa0758430:intron | 30.0% | |
| TTGATCATCATCAGGTAAAA+AGG | - | chr5_2:13717694-13717713 | None:intergenic | 30.0% | |
| !!! | TCTGATGATTTTTTCTTCCA+CGG | - | chr5_2:13717772-13717791 | None:intergenic | 30.0% |
| ATCATCAGACAAAATCACAA+AGG | + | chr5_2:13717783-13717802 | Msa0758430:CDS | 30.0% | |
| TAAGACAAAAAGTAAGTACC+TGG | - | chr5_2:13717876-13717895 | None:intergenic | 30.0% | |
| !! | AGGACTTGTTAAGAAAATGT+TGG | + | chr5_2:13718252-13718271 | Msa0758430:intron | 30.0% |
| !! | GGACTTGTTAAGAAAATGTT+GGG | + | chr5_2:13718253-13718272 | Msa0758430:intron | 30.0% |
| ACTCATAGTTACTGATAAGT+AGG | + | chr5_2:13718280-13718299 | Msa0758430:intron | 30.0% | |
| ! | TTTTCTGTTAGAACAGAATC+TGG | - | chr5_2:13718495-13718514 | None:intergenic | 30.0% |
| ! | TTCATACTTGTATGCCTTTT+AGG | + | chr5_2:13718531-13718550 | Msa0758430:intron | 30.0% |
| !! | AGATTCAAGTTGACATCTTA+AGG | - | chr5_2:13718586-13718605 | None:intergenic | 30.0% |
| TTCTTATGAAATCTCAACAG+TGG | + | chr5_2:13718727-13718746 | Msa0758430:CDS | 30.0% | |
| TCTTATGAAATCTCAACAGT+GGG | + | chr5_2:13718728-13718747 | Msa0758430:CDS | 30.0% | |
| TGAAGCAGAAATAGACAAAT+TGG | + | chr5_2:13718770-13718789 | Msa0758430:CDS | 30.0% | |
| TTCATGAAGTGATCTTAGAA+GGG | - | chr5_2:13718832-13718851 | None:intergenic | 30.0% | |
| TTTCATGAAGTGATCTTAGA+AGG | - | chr5_2:13718833-13718852 | None:intergenic | 30.0% | |
| TCATGTTCTTCTCTTCATTT+CGG | - | chr5_2:13719001-13719020 | None:intergenic | 30.0% | |
| ATCCATCAAAGAAAAACTAC+TGG | + | chr5_2:13719197-13719216 | Msa0758430:CDS | 30.0% | |
| !! | CAATTGTTTTGTAAGAACCT+CGG | - | chr5_2:13719234-13719253 | None:intergenic | 30.0% |
| AAAGAGATTGAAAGAAGCTT+TGG | + | chr5_2:13719274-13719293 | Msa0758430:CDS | 30.0% | |
| AAGTTCCCAGAAATCAAATT+TGG | + | chr5_2:13719400-13719419 | Msa0758430:CDS | 30.0% | |
| ! | GATTGCCAAATTTGATTTCT+GGG | - | chr5_2:13719408-13719427 | None:intergenic | 30.0% |
| ! | TGATTGCCAAATTTGATTTC+TGG | - | chr5_2:13719409-13719428 | None:intergenic | 30.0% |
| TAACTCTACTGTTACCAAAA+TGG | - | chr5_2:13719550-13719569 | None:intergenic | 30.0% | |
| TTTGTTAACAATTTGCACAC+TGG | - | chr5_2:13719672-13719691 | None:intergenic | 30.0% | |
| GGACAAAAATGAGAATTTAG+TGG | + | chr5_2:13719742-13719761 | Msa0758430:CDS | 30.0% | |
| GTCTCATAAATCATACAACT+TGG | + | chr5_2:13719808-13719827 | Msa0758430:CDS | 30.0% | |
| AGTACATATCATATTGGTGA+TGG | + | chr5_2:13720209-13720228 | Msa0758430:intron | 30.0% | |
| !! | CATGTTTGAAGGTACTATAT+AGG | - | chr5_2:13720252-13720271 | None:intergenic | 30.0% |
| TCTTCCGTTAAACCAAATTA+TGG | + | chr5_2:13720678-13720697 | Msa0758430:CDS | 30.0% | |
| ! | ATCAATTTCATCTGAGGTAT+AGG | - | chr5_2:13720724-13720743 | None:intergenic | 30.0% |
| AGTATGATCAATTTCATCTG+AGG | - | chr5_2:13720730-13720749 | None:intergenic | 30.0% | |
| ! | TTTTCATCTTCACACAACTT+TGG | + | chr5_2:13720801-13720820 | Msa0758430:CDS | 30.0% |
| ATTTGTCGAAAAATTGCCTT+CGG | - | chr5_2:13720850-13720869 | None:intergenic | 30.0% | |
| !!! | GTTACTTTTAGAAGTATCAG+AGG | + | chr5_2:13721013-13721032 | Msa0758430:three_prime_UTR | 30.0% |
| GATACATACATGGAATAGAA+GGG | - | chr5_2:13721155-13721174 | None:intergenic | 30.0% | |
| TGATACATACATGGAATAGA+AGG | - | chr5_2:13721156-13721175 | None:intergenic | 30.0% | |
| AGAGTTTACCAAAATTTAGC+TGG | + | chr5_2:13721179-13721198 | Msa0758430:three_prime_UTR | 30.0% | |
| ! | TTACACAACCAGCTAAATTT+TGG | - | chr5_2:13721190-13721209 | None:intergenic | 30.0% |
| TAAACTACTCTTAGTCATCT+AGG | - | chr5_2:13721310-13721329 | None:intergenic | 30.0% | |
| CTTTCAATCAATACTATGTC+AGG | + | chr5_2:13721342-13721361 | Msa0758430:intron | 30.0% | |
| ! | CAATACTATGTCAGGTTTTA+AGG | + | chr5_2:13721350-13721369 | Msa0758430:intron | 30.0% |
| CTCTCTCTTCAGTACTAATA+CGG | + | chr5_2:13716916-13716935 | Msa0758430:five_prime_UTR | 35.0% | |
| ACAAGAATGAATCTGAGTGA+TGG | - | chr5_2:13717031-13717050 | None:intergenic | 35.0% | |
| ! | TACATAGTTTAGGGTACAAC+TGG | + | chr5_2:13717342-13717361 | Msa0758430:intron | 35.0% |
| !!! | GCAAGGAAAGGCTATTTTTT+TGG | + | chr5_2:13717364-13717383 | Msa0758430:intron | 35.0% |
| !!! | AGGAAAGGCTATTTTTTTGG+GGG | + | chr5_2:13717367-13717386 | Msa0758430:intron | 35.0% |
| !!! | TATTTTTTTGGGGGAGGAAA+AGG | + | chr5_2:13717376-13717395 | Msa0758430:intron | 35.0% |
| !!! | ATTTTTTTGGGGGAGGAAAA+GGG | + | chr5_2:13717377-13717396 | Msa0758430:intron | 35.0% |
| TTGAAGTTGCAAGCATTTGA+TGG | + | chr5_2:13717405-13717424 | Msa0758430:intron | 35.0% | |
| TGAAGTTGCAAGCATTTGAT+GGG | + | chr5_2:13717406-13717425 | Msa0758430:intron | 35.0% | |
| TGCTCAAATTGATCATCATC+AGG | - | chr5_2:13717702-13717721 | None:intergenic | 35.0% | |
| AATTTGAGCATACTTTGAGC+AGG | + | chr5_2:13717712-13717731 | Msa0758430:intron | 35.0% | |
| ATTTGAGCATACTTTGAGCA+GGG | + | chr5_2:13717713-13717732 | Msa0758430:intron | 35.0% | |
| ! | GGAAGATCAAGTTGTAAACA+TGG | + | chr5_2:13718044-13718063 | Msa0758430:CDS | 35.0% |
| GGAGAGTCAAGTAAAAGATT+TGG | + | chr5_2:13718065-13718084 | Msa0758430:CDS | 35.0% | |
| TGTCGCTCTATCTAGTAAAT+TGG | + | chr5_2:13718305-13718324 | Msa0758430:intron | 35.0% | |
| !! | TACTTGTATGCCTTTTAGGT+TGG | + | chr5_2:13718535-13718554 | Msa0758430:intron | 35.0% |
| !!! | ACTTGTATGCCTTTTAGGTT+GGG | + | chr5_2:13718536-13718555 | Msa0758430:intron | 35.0% |
| GAAAGAATAGCTCACTTAGA+TGG | + | chr5_2:13718633-13718652 | Msa0758430:CDS | 35.0% | |
| GAAGCAGATAAGAACTGTAA+AGG | + | chr5_2:13718674-13718693 | Msa0758430:CDS | 35.0% | |
| AAGTGAGCAGAAAATACAAG+AGG | + | chr5_2:13718701-13718720 | Msa0758430:CDS | 35.0% | |
| !!! | CTTCTTTTGAAGCTCTAACT+CGG | - | chr5_2:13718904-13718923 | None:intergenic | 35.0% |
| TGAGCTGCATATGATTTCTA+AGG | + | chr5_2:13718965-13718984 | Msa0758430:CDS | 35.0% | |
| ! | GCATATGATTTCTAAGGAGA+TGG | + | chr5_2:13718971-13718990 | Msa0758430:CDS | 35.0% |
| GATTATGAAATCAGCAGAAG+TGG | + | chr5_2:13719019-13719038 | Msa0758430:CDS | 35.0% | |
| CGAGGTTCTTACAAAACAAT+TGG | + | chr5_2:13719232-13719251 | Msa0758430:CDS | 35.0% | |
| GGTTCTTACAAAACAATTGG+AGG | + | chr5_2:13719235-13719254 | Msa0758430:CDS | 35.0% | |
| CTGTAATTCAGCATTACTTG+AGG | - | chr5_2:13719300-13719319 | None:intergenic | 35.0% | |
| CTCAAGTAATGCTGAATTAC+AGG | + | chr5_2:13719298-13719317 | Msa0758430:CDS | 35.0% | |
| CTTAAGTCTGTTAACTGTCT+TGG | - | chr5_2:13719342-13719361 | None:intergenic | 35.0% | |
| ACAGATATAGAAGTGATGCT+CGG | - | chr5_2:13719470-13719489 | None:intergenic | 35.0% | |
| AGCATCACTTCTATATCTGT+TGG | + | chr5_2:13719470-13719489 | Msa0758430:CDS | 35.0% | |
| TCACTTCTATATCTGTTGGT+TGG | + | chr5_2:13719474-13719493 | Msa0758430:CDS | 35.0% | |
| TGAAACTTTCTCAGAACTGA+TGG | + | chr5_2:13719601-13719620 | Msa0758430:CDS | 35.0% | |
| TTTCCTTGAAGTCGAGAAAA+TGG | + | chr5_2:13719628-13719647 | Msa0758430:CDS | 35.0% | |
| ! | AGTTGATACGGTTGATCTTA+AGG | + | chr5_2:13719721-13719740 | Msa0758430:CDS | 35.0% |
| GAGGAAAAAATGCAAAGGTT+AGG | + | chr5_2:13720001-13720020 | Msa0758430:intron | 35.0% | |
| CCTATCATATTGTTGCCAAT+GGG | - | chr5_2:13720027-13720046 | None:intergenic | 35.0% | |
| ACCTATCATATTGTTGCCAA+TGG | - | chr5_2:13720028-13720047 | None:intergenic | 35.0% | |
| TAACGACATCAATACTCAGA+AGG | + | chr5_2:13720164-13720183 | Msa0758430:CDS | 35.0% | |
| TGAACGCAAAACATGTTTGA+AGG | - | chr5_2:13720263-13720282 | None:intergenic | 35.0% | |
| ! | GGTCTCTTTGTTTAAAATCG+AGG | + | chr5_2:13720309-13720328 | Msa0758430:intron | 35.0% |
| CAACACCTTAATGTCATTAC+AGG | + | chr5_2:13720533-13720552 | Msa0758430:intron | 35.0% | |
| TGTGTCCTGTAATGACATTA+AGG | - | chr5_2:13720541-13720560 | None:intergenic | 35.0% | |
| !! | ATCTTCTAGAGTCAGTTTGT+GGG | - | chr5_2:13720644-13720663 | None:intergenic | 35.0% |
| !! | AATCTTCTAGAGTCAGTTTG+TGG | - | chr5_2:13720645-13720664 | None:intergenic | 35.0% |
| ! | CCAGCCATAATTTGGTTTAA+CGG | - | chr5_2:13720685-13720704 | None:intergenic | 35.0% |
| TCTTCTACTTCTGACATTCA+AGG | + | chr5_2:13720765-13720784 | Msa0758430:CDS | 35.0% | |
| AACTCTCAGTGATACATACA+TGG | - | chr5_2:13721165-13721184 | None:intergenic | 35.0% | |
| ATTTGCAGTGACTGTTTGAA+AGG | + | chr5_2:13721394-13721413 | Msa0758430:three_prime_UTR | 35.0% | |
| TCAAGTGGCATATATTTGCA+AGG | + | chr5_2:13721424-13721443 | Msa0758430:three_prime_UTR | 35.0% | |
| ATGTCGCTGCTACATAGTTT+AGG | + | chr5_2:13717332-13717351 | Msa0758430:intron | 40.0% | |
| TGTCGCTGCTACATAGTTTA+GGG | + | chr5_2:13717333-13717352 | Msa0758430:intron | 40.0% | |
| !!! | AAAGGCTATTTTTTTGGGGG+AGG | + | chr5_2:13717370-13717389 | Msa0758430:intron | 40.0% |
| !!! | TTTTTTTGGGGGAGGAAAAG+GGG | + | chr5_2:13717378-13717397 | Msa0758430:intron | 40.0% |
| ! | GCATTTGATGGGTGGTTAAA+AGG | + | chr5_2:13717417-13717436 | Msa0758430:intron | 40.0% |
| ! | AGGGTAGTAGAATTCTGAGA+TGG | + | chr5_2:13717732-13717751 | Msa0758430:intron | 40.0% |
| ACAGAGTCAGGTGTAACAAA+TGG | - | chr5_2:13717817-13717836 | None:intergenic | 40.0% | |
| TTTGTTACACCTGACTCTGT+TGG | + | chr5_2:13717817-13717836 | Msa0758430:CDS | 40.0% | |
| TAAATGTGCCACAGAAGACA+AGG | - | chr5_2:13717848-13717867 | None:intergenic | 40.0% | |
| TTGTCTTCTGTGGCACATTT+AGG | + | chr5_2:13717847-13717866 | Msa0758430:CDS | 40.0% | |
| GTAGGAGAGGTCAATACAAT+TGG | + | chr5_2:13718405-13718424 | Msa0758430:intron | 40.0% | |
| GGATGTTTGATCACTGAGTT+TGG | - | chr5_2:13718431-13718450 | None:intergenic | 40.0% | |
| GCAGATAAGAACTGTAAAGG+AGG | + | chr5_2:13718677-13718696 | Msa0758430:CDS | 40.0% | |
| ! | GGCAATAGTCTTAACATCCT+CGG | - | chr5_2:13719060-13719079 | None:intergenic | 40.0% |
| TGTTAAGACTATTGCCTTGC+TGG | + | chr5_2:13719064-13719083 | Msa0758430:CDS | 40.0% | |
| ! | GGCCAGTAGTTTTTCTTTGA+TGG | - | chr5_2:13719202-13719221 | None:intergenic | 40.0% |
| ATGCTGAATTACAGGCTTCT+AGG | + | chr5_2:13719306-13719325 | Msa0758430:CDS | 40.0% | |
| ACTTAAGAGCTTAGAAGCAG+AGG | + | chr5_2:13719355-13719374 | Msa0758430:CDS | 40.0% | |
| ! | TATATCTGTTGGTTGGCACA+AGG | + | chr5_2:13719481-13719500 | Msa0758430:CDS | 40.0% |
| ! | TCCTCAGTTTCTGACCATTT+TGG | + | chr5_2:13719533-13719552 | Msa0758430:CDS | 40.0% |
| ACCAAAATGGTCAGAAACTG+AGG | - | chr5_2:13719537-13719556 | None:intergenic | 40.0% | |
| !!! | ATGCCATTTTCTCGACTTCA+AGG | - | chr5_2:13719634-13719653 | None:intergenic | 40.0% |
| GCTAAAGAATGATCTCGAAG+AGG | + | chr5_2:13719934-13719953 | Msa0758430:CDS | 40.0% | |
| GTCATCACGATTCTTTAGTG+AGG | + | chr5_2:13719966-13719985 | Msa0758430:CDS | 40.0% | |
| AGTGAGGCACAAAGATATTG+AGG | + | chr5_2:13719982-13720001 | Msa0758430:CDS | 40.0% | |
| CCCATTGGCAACAATATGAT+AGG | + | chr5_2:13720024-13720043 | Msa0758430:intron | 40.0% | |
| ! | TCTTTCTGTTTGCCACTTGA+AGG | + | chr5_2:13720103-13720122 | Msa0758430:intron | 40.0% |
| ! | CTTTCTGTTTGCCACTTGAA+GGG | + | chr5_2:13720104-13720123 | Msa0758430:intron | 40.0% |
| !! | GAGCTGTTTCTAGTTGATGT+TGG | - | chr5_2:13720453-13720472 | None:intergenic | 40.0% |
| ATGTAGTGTCTCCTGACATT+CGG | - | chr5_2:13720592-13720611 | None:intergenic | 40.0% | |
| AGACACTACATGTACTTGGT+AGG | + | chr5_2:13720601-13720620 | Msa0758430:CDS | 40.0% | |
| CCGTTAAACCAAATTATGGC+TGG | + | chr5_2:13720682-13720701 | Msa0758430:CDS | 40.0% | |
| GAATTCGACCAGCCATAATT+TGG | - | chr5_2:13720693-13720712 | None:intergenic | 40.0% | |
| ! | TATGGCTGGTCGAATTCTAA+TGG | + | chr5_2:13720696-13720715 | Msa0758430:CDS | 40.0% |
| TGGTTCCACATCATGTCTTT+CGG | + | chr5_2:13720821-13720840 | Msa0758430:CDS | 40.0% | |
| ! | ATGTGAATTTTGCTTCCCTG+TGG | - | chr5_2:13720940-13720959 | None:intergenic | 40.0% |
| ACAGGGAAGCAAAATTCACA+TGG | + | chr5_2:13720939-13720958 | Msa0758430:CDS | 40.0% | |
| TATGTACAGCATCATCGATG+AGG | - | chr5_2:13721041-13721060 | None:intergenic | 40.0% | |
| TTCTACTAGGCAGTTAACCA+TGG | + | chr5_2:13721277-13721296 | Msa0758430:three_prime_UTR | 40.0% | |
| ! | GTCATCTAGGTTTTCAACCA+TGG | - | chr5_2:13721297-13721316 | None:intergenic | 40.0% |
| GCAGCGACATTTCAGATTGA+AGG | - | chr5_2:13717322-13717341 | None:intergenic | 45.0% | |
| ! | AGTTTAGGGTACAACTGGCA+AGG | + | chr5_2:13717347-13717366 | Msa0758430:intron | 45.0% |
| AGTTGCAAGCATTTGATGGG+TGG | + | chr5_2:13717409-13717428 | Msa0758430:intron | 45.0% | |
| TGTGGCACATTTAGGAAACC+AGG | + | chr5_2:13717855-13717874 | Msa0758430:CDS | 45.0% | |
| ACAACATGCAAAAGTTGCCG+AGG | + | chr5_2:13718143-13718162 | Msa0758430:CDS | 45.0% | |
| TATTGACCTCTCCTACTGCA+GGG | - | chr5_2:13718401-13718420 | None:intergenic | 45.0% | |
| !!! | ATGCCTTTTAGGTTGGGAGA+AGG | + | chr5_2:13718542-13718561 | Msa0758430:intron | 45.0% |
| CTCTAACTCGGACTCAACTT+CGG | - | chr5_2:13718892-13718911 | None:intergenic | 45.0% | |
| TAAGACTATTGCCTTGCTGG+AGG | + | chr5_2:13719067-13719086 | Msa0758430:CDS | 45.0% | |
| AAGACTATTGCCTTGCTGGA+GGG | + | chr5_2:13719068-13719087 | Msa0758430:CDS | 45.0% | |
| TAAGAACCTCGGATTCTTGC+AGG | - | chr5_2:13719223-13719242 | None:intergenic | 45.0% | |
| AGTGACTCAACAGGACTTTC+TGG | - | chr5_2:13719509-13719528 | None:intergenic | 45.0% | |
| AGTGGAACATGAACAGCTTC+TGG | + | chr5_2:13719760-13719779 | Msa0758430:CDS | 45.0% | |
| AATGCAAAGGTTAGGCCCAT+TGG | + | chr5_2:13720009-13720028 | Msa0758430:intron | 45.0% | |
| GAAAAAGCTAGCCGAATGTC+AGG | + | chr5_2:13720578-13720597 | Msa0758430:CDS | 45.0% | |
| CAGGAGACACTACATGTACT+TGG | + | chr5_2:13720597-13720616 | Msa0758430:CDS | 45.0% | |
| CAGTGAGCATGTAACAACTC+TGG | - | chr5_2:13720890-13720909 | None:intergenic | 45.0% | |
| TTGAAAGGCGAAGACTCAAG+TGG | + | chr5_2:13721409-13721428 | Msa0758430:three_prime_UTR | 45.0% | |
| !!! | TTTTCTTTTTTTTAAAAAAA+GGG | - | chr5_2:13717455-13717474 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_2:13716882-13716901 | None:intergenic | 50.0% | |
| TAGCAATACGTCTCCGACAC+TGG | + | chr5_2:13717289-13717308 | Msa0758430:intron | 50.0% | |
| ! | TGAAGGTGTGTCTCCAGTGT+CGG | - | chr5_2:13717305-13717324 | None:intergenic | 50.0% |
| AGGGTACAACTGGCAAGGAA+AGG | + | chr5_2:13717352-13717371 | Msa0758430:intron | 50.0% | |
| !! | AATTCTGAGATGGACCGTCG+AGG | + | chr5_2:13717742-13717761 | Msa0758430:exon | 50.0% |
| AAGGTGGAACCAACAGAGTC+AGG | - | chr5_2:13717829-13717848 | None:intergenic | 50.0% | |
| TGGTTCCACCTTGTCTTCTG+TGG | + | chr5_2:13717837-13717856 | Msa0758430:CDS | 50.0% | |
| ATGTGCCACAGAAGACAAGG+TGG | - | chr5_2:13717845-13717864 | None:intergenic | 50.0% | |
| ATACGCGCGTATGTCTGGAT+TGG | + | chr5_2:13718023-13718042 | Msa0758430:CDS | 50.0% | |
| ! | GTATTGACCTCTCCTACTGC+AGG | - | chr5_2:13718402-13718421 | None:intergenic | 50.0% |
| CAGCCTTCTCCCAACCTAAA+AGG | - | chr5_2:13718548-13718567 | None:intergenic | 50.0% | |
| CTGTTGCGAAAGAAGTTGCC+TGG | + | chr5_2:13719113-13719132 | Msa0758430:CDS | 50.0% | |
| TTCATTTGCGCCAATGCAGC+AGG | - | chr5_2:13719140-13719159 | None:intergenic | 50.0% | |
| ! | GATGGATTCCACTGATGACG+TGG | - | chr5_2:13719184-13719203 | None:intergenic | 50.0% |
| GAGGATGCAAGTGACTCAAC+AGG | - | chr5_2:13719518-13719537 | None:intergenic | 50.0% | |
| CAGACACTTGTCCCTTCAAG+TGG | - | chr5_2:13720118-13720137 | None:intergenic | 50.0% | |
| CACTTGAAGGGACAAGTGTC+TGG | + | chr5_2:13720116-13720135 | Msa0758430:intron | 50.0% | |
| TCTGGTGTGTGCAGCGAATT+CGG | + | chr5_2:13720134-13720153 | Msa0758430:CDS | 50.0% | |
| GGTGTCCGAAAGACATGATG+TGG | - | chr5_2:13720829-13720848 | None:intergenic | 50.0% | |
| TCATGTCTTTCGGACACCGA+AGG | + | chr5_2:13720831-13720850 | Msa0758430:CDS | 50.0% | |
| ATCCTTCTGCTTCTGCCACA+GGG | + | chr5_2:13720922-13720941 | Msa0758430:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGGAGC+GGG | - | chr5_2:13716878-13716897 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGGAG+CGG | - | chr5_2:13716879-13716898 | None:intergenic | 55.0% | |
| GAGTCATACGCGCGTATGTC+TGG | + | chr5_2:13718018-13718037 | Msa0758430:CDS | 55.0% | |
| GCTACCTGAGACTGCTTCCT+CGG | - | chr5_2:13718163-13718182 | None:intergenic | 55.0% | |
| AGGTTGGGAGAAGGCTGATG+CGG | + | chr5_2:13718551-13718570 | Msa0758430:intron | 55.0% | |
| GGCAAACAAACGACACACCG+AGG | + | chr5_2:13719040-13719059 | Msa0758430:CDS | 55.0% | |
| AGTACACGCCACGTCATCAG+TGG | + | chr5_2:13719173-13719192 | Msa0758430:CDS | 55.0% | |
| ! | TACTGGCCTGCAAGAATCCG+AGG | + | chr5_2:13719214-13719233 | Msa0758430:CDS | 55.0% |
| CATCCTTCTGCTTCTGCCAC+AGG | + | chr5_2:13720921-13720940 | Msa0758430:CDS | 55.0% | |
| TTCCCTGTGGCAGAAGCAGA+AGG | - | chr5_2:13720927-13720946 | None:intergenic | 55.0% | |
| CTGAGATGGACCGTCGAGGT+TGG | + | chr5_2:13717746-13717765 | Msa0758430:exon | 60.0% | |
| TCTTCCACGGCCAACCTCGA+CGG | - | chr5_2:13717759-13717778 | None:intergenic | 60.0% | |
| GTTGCCGAGGAAGCAGTCTC+AGG | + | chr5_2:13718156-13718175 | Msa0758430:CDS | 60.0% | |
| TACTGCAGTCGCCCTGCAGT+AGG | + | chr5_2:13718387-13718406 | Msa0758430:intron | 60.0% | |
| GCAACAGACCACGAAGCCGA+TGG | - | chr5_2:13719100-13719119 | None:intergenic | 60.0% | |
| GTTGCCTGGTCCTGCTGCAT+TGG | + | chr5_2:13719127-13719146 | Msa0758430:CDS | 60.0% | |
| CAGTCGCCCTGCAGTAGGAG+AGG | + | chr5_2:13718392-13718411 | Msa0758430:intron | 65.0% | |
| ATGGCACTCGCCCTCCAGCA+AGG | - | chr5_2:13719081-13719100 | None:intergenic | 65.0% | |
| TGCTGGAGGGCGAGTGCCAT+CGG | + | chr5_2:13719081-13719100 | Msa0758430:CDS | 65.0% | |
| TGCGCCAATGCAGCAGGACC+AGG | - | chr5_2:13719134-13719153 | None:intergenic | 65.0% | |
| ! | TGGACCGTCGAGGTTGGCCG+TGG | + | chr5_2:13717752-13717771 | Msa0758430:CDS | 70.0% |
| !! | GGCGAGTGCCATCGGCTTCG+TGG | + | chr5_2:13719089-13719108 | Msa0758430:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 13716875 | 13721501 | 13716875 | ID=Msa0758430;Name=Msa0758430 |
| chr5_2 | mRNA | 13716875 | 13721501 | 13716875 | ID=Msa0758430-mRNA-1;Parent=Msa0758430;Name=Msa0758430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=204|1|1|1|0.57|0.37|8|411|767 |
| chr5_2 | exon | 13716875 | 13717061 | 13716875 | ID=Msa0758430-mRNA-1:exon:6123;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13717734 | 13717876 | 13717734 | ID=Msa0758430-mRNA-1:exon:6124;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13717976 | 13718177 | 13717976 | ID=Msa0758430-mRNA-1:exon:6125;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13718553 | 13720017 | 13718553 | ID=Msa0758430-mRNA-1:exon:6126;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13720125 | 13720185 | 13720125 | ID=Msa0758430-mRNA-1:exon:6127;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13720555 | 13721232 | 13720555 | ID=Msa0758430-mRNA-1:exon:6128;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13721262 | 13721321 | 13721262 | ID=Msa0758430-mRNA-1:exon:6129;Parent=Msa0758430-mRNA-1 |
| chr5_2 | exon | 13721379 | 13721501 | 13721379 | ID=Msa0758430-mRNA-1:exon:6130;Parent=Msa0758430-mRNA-1 |
| chr5_2 | five_prime_UTR | 13716875 | 13717061 | 13716875 | ID=Msa0758430-mRNA-1:five_prime_utr;Parent=Msa0758430-mRNA-1 |
| chr5_2 | five_prime_UTR | 13717734 | 13717750 | 13717734 | ID=Msa0758430-mRNA-1:five_prime_utr;Parent=Msa0758430-mRNA-1 |
| chr5_2 | CDS | 13717751 | 13717876 | 13717751 | ID=Msa0758430-mRNA-1:cds;Parent=Msa0758430-mRNA-1 |
| chr5_2 | CDS | 13717976 | 13718177 | 13717976 | ID=Msa0758430-mRNA-1:cds;Parent=Msa0758430-mRNA-1 |
| chr5_2 | CDS | 13718553 | 13720017 | 13718553 | ID=Msa0758430-mRNA-1:cds;Parent=Msa0758430-mRNA-1 |
| chr5_2 | CDS | 13720125 | 13720185 | 13720125 | ID=Msa0758430-mRNA-1:cds;Parent=Msa0758430-mRNA-1 |
| chr5_2 | CDS | 13720555 | 13721004 | 13720555 | ID=Msa0758430-mRNA-1:cds;Parent=Msa0758430-mRNA-1 |
| chr5_2 | three_prime_UTR | 13721005 | 13721232 | 13721005 | ID=Msa0758430-mRNA-1:three_prime_utr;Parent=Msa0758430-mRNA-1 |
| chr5_2 | three_prime_UTR | 13721262 | 13721321 | 13721262 | ID=Msa0758430-mRNA-1:three_prime_utr;Parent=Msa0758430-mRNA-1 |
| chr5_2 | three_prime_UTR | 13721379 | 13721501 | 13721379 | ID=Msa0758430-mRNA-1:three_prime_utr;Parent=Msa0758430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
