Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717990 | XP_003612350.1 | 92.878 | 337 | 17 | 2 | 1 | 337 | 1 | 330 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717990 | sp|O81791|RKD5_ARATH | 50.456 | 329 | 139 | 9 | 1 | 319 | 40 | 354 | 3.25e-93 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717990 | G7K041 | 92.878 | 337 | 17 | 2 | 1 | 337 | 1 | 330 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0717990 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717990 | Msa0718010 | 0.821768 | 3.387332e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717990 | MtrunA17_Chr5g0406901 | 92.878 | 337 | 17 | 2 | 1 | 337 | 1 | 330 | 0.0 | 632 |
| Msa0717990 | MtrunA17_Chr3g0092141 | 36.296 | 135 | 78 | 2 | 187 | 320 | 38 | 165 | 2.95e-23 | 95.1 |
| Msa0717990 | MtrunA17_Chr4g0060761 | 39.062 | 128 | 74 | 1 | 198 | 325 | 146 | 269 | 5.74e-23 | 96.7 |
| Msa0717990 | MtrunA17_Chr3g0127001 | 38.400 | 125 | 59 | 2 | 196 | 320 | 148 | 254 | 9.18e-21 | 90.1 |
| Msa0717990 | MtrunA17_Chr1g0182631 | 38.400 | 125 | 59 | 2 | 196 | 320 | 121 | 227 | 6.54e-20 | 87.0 |
| Msa0717990 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 205 | 289 | 414 | 497 | 1.23e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717990 | AT4G35590.1 | 50.456 | 329 | 139 | 9 | 1 | 319 | 40 | 354 | 3.31e-94 | 285 |
| Msa0717990 | AT4G35590.2 | 50.794 | 315 | 131 | 9 | 15 | 319 | 4 | 304 | 6.46e-91 | 275 |
| Msa0717990 | AT1G18790.1 | 44.860 | 107 | 56 | 1 | 212 | 318 | 133 | 236 | 1.40e-23 | 98.6 |
| Msa0717990 | AT1G74480.1 | 46.087 | 115 | 57 | 2 | 205 | 317 | 131 | 242 | 1.41e-23 | 99.0 |
| Msa0717990 | AT5G66990.1 | 42.727 | 110 | 59 | 2 | 212 | 320 | 164 | 270 | 2.78e-21 | 92.4 |
| Msa0717990 | AT5G53040.1 | 42.609 | 115 | 53 | 1 | 206 | 320 | 147 | 248 | 3.84e-21 | 91.7 |
| Msa0717990 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 199 | 262 | 346 | 409 | 1.44e-13 | 71.6 |
Find 65 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTCATCTTCATCTTCA+TGG | 0.203507 | 5_1:-12055138 | Msa0717990:exon |
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_1:-12052876 | Msa0717990:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_1:-12052788 | Msa0717990:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5_1:-12054804 | Msa0717990:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_1:-12052726 | Msa0717990:intron |
| TTGAGATCATTAAGCAGGTT+TGG | 0.348731 | 5_1:+12053393 | None:intergenic |
| TTCTTTGACGCTTCAGCAAT+TGG | 0.353848 | 5_1:+12052836 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_1:+12053411 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5_1:-12053220 | Msa0717990:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_1:-12053421 | Msa0717990:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_1:-12053322 | Msa0717990:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_1:+12054669 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5_1:+12054793 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_1:-12052766 | Msa0717990:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_1:+12051962 | None:intergenic |
| GATGAAAATGAAGAAGAAGT+TGG | 0.388638 | 5_1:+12055157 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_1:+12053327 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396954 | 5_1:-12053265 | Msa0717990:CDS |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 5_1:-12052083 | Msa0717990:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_1:+12054878 | None:intergenic |
| AAGGGTATAAGAATGGTGTT+TGG | 0.445551 | 5_1:-12054747 | Msa0717990:CDS |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 5_1:-12052054 | Msa0717990:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_1:-12052823 | Msa0717990:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_1:-12052110 | Msa0717990:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_1:-12052805 | Msa0717990:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 5_1:+12052132 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 5_1:+12052045 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 5_1:+12052069 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5_1:+12053228 | None:intergenic |
| ACAGGCAAGACTATCTTTAG+TGG | 0.485270 | 5_1:+12053276 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_1:-12052775 | Msa0717990:CDS |
| TCATGTTGAGATCATTAAGC+AGG | 0.496279 | 5_1:+12053388 | None:intergenic |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5_1:-12052176 | Msa0717990:intron |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.504221 | 5_1:+12053398 | None:intergenic |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_1:-12052122 | Msa0717990:CDS |
| GCAAGACTATCTTTAGTGGT+TGG | 0.512102 | 5_1:+12053280 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 5_1:+12055171 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_1:-12054875 | Msa0717990:CDS |
| ATTGCATGTACCTGGTTGAA+TGG | 0.520241 | 5_1:+12055079 | None:intergenic |
| TCTCAACATGATATACAAGT+TGG | 0.522938 | 5_1:-12053376 | Msa0717990:CDS |
| AATTGGCATATCAAAGTACT+TGG | 0.526594 | 5_1:+12052853 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_1:+12052892 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_1:+12054692 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_1:-12053364 | Msa0717990:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 5_1:+12051956 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_1:-12052170 | Msa0717990:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.549395 | 5_1:-12052824 | Msa0717990:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_1:+12054691 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 5_1:-12052135 | Msa0717990:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_1:-12052171 | Msa0717990:CDS |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_1:+12055112 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 5_1:-12052093 | Msa0717990:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_1:-12052149 | Msa0717990:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_1:+12052752 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5_1:+12053258 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 5_1:+12052070 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_1:-12052167 | Msa0717990:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_1:-12053331 | Msa0717990:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_1:-12054886 | Msa0717990:CDS |
| TTCAACAACACCATTCAACC+AGG | 0.645034 | 5_1:-12055089 | Msa0717990:intron |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_1:-12053332 | Msa0717990:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_1:+12052885 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_1:+12052761 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_1:-12053318 | Msa0717990:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_1:-12054883 | Msa0717990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | - | chr5_1:12054178-12054197 | Msa0717990:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5_1:12054553-12054572 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5_1:12052616-12052635 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5_1:12052617-12052636 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5_1:12052644-12052663 | Msa0717990:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | - | chr5_1:12054186-12054205 | Msa0717990:intron | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTG+TGG | - | chr5_1:12052279-12052298 | Msa0717990:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTGT+GGG | - | chr5_1:12052280-12052299 | Msa0717990:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5_1:12052643-12052662 | Msa0717990:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5_1:12053125-12053144 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5_1:12053199-12053218 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5_1:12053200-12053219 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5_1:12053384-12053403 | Msa0717990:CDS | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5_1:12053767-12053786 | Msa0717990:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | + | chr5_1:12054173-12054192 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5_1:12054328-12054347 | Msa0717990:intron | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5_1:12054370-12054389 | Msa0717990:intron | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5_1:12054709-12054728 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5_1:12054734-12054753 | Msa0717990:CDS | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5_1:12054860-12054879 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5_1:12054962-12054981 | None:intergenic | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | - | chr5_1:12055252-12055271 | Msa0717990:five_prime_UTR | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTGTG+GGG | - | chr5_1:12052281-12052300 | Msa0717990:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5_1:12052481-12052500 | Msa0717990:intron | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5_1:12052492-12052511 | Msa0717990:intron | 25.0% |
| !!! | TTATGTATTCTGGGTTTTTT+TGG | - | chr5_1:12052653-12052672 | Msa0717990:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5_1:12052708-12052727 | Msa0717990:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5_1:12053126-12053145 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5_1:12053342-12053361 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5_1:12053809-12053828 | Msa0717990:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5_1:12054262-12054281 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5_1:12054327-12054346 | Msa0717990:intron | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5_1:12054364-12054383 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5_1:12054623-12054642 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5_1:12054648-12054667 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5_1:12054698-12054717 | Msa0717990:CDS | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | + | chr5_1:12054777-12054796 | None:intergenic | 25.0% |
| ! | TAAGAAGTTCACTTAAAGAT+TGG | + | chr5_1:12055031-12055050 | None:intergenic | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | + | chr5_1:12055246-12055265 | None:intergenic | 25.0% |
| !!! | CCTCTTTTTTCGTTTGTTTT+TGG | + | chr5_1:12051995-12052014 | None:intergenic | 30.0% |
| CCAAAAACAAACGAAAAAAG+AGG | - | chr5_1:12051992-12052011 | Msa0717990:CDS | 30.0% | |
| GATGAAAATGAAGAAGAAGT+TGG | + | chr5_1:12052092-12052111 | None:intergenic | 30.0% | |
| GATTTCAACAACCTAAGAAT+TGG | + | chr5_1:12052456-12052475 | None:intergenic | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5_1:12052480-12052499 | Msa0717990:intron | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5_1:12052557-12052576 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5_1:12052580-12052599 | None:intergenic | 30.0% | |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5_1:12052714-12052733 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5_1:12052717-12052736 | Msa0717990:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | + | chr5_1:12052790-12052809 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5_1:12052814-12052833 | Msa0717990:CDS | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5_1:12052977-12052996 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5_1:12053410-12053429 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5_1:12053635-12053654 | Msa0717990:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5_1:12053636-12053655 | Msa0717990:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5_1:12053805-12053824 | None:intergenic | 30.0% | |
| TCTCAACATGATATACAAGT+TGG | - | chr5_1:12053870-12053889 | Msa0717990:intron | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5_1:12054139-12054158 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5_1:12054245-12054264 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5_1:12054396-12054415 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5_1:12054423-12054442 | Msa0717990:intron | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | - | chr5_1:12054801-12054820 | Msa0717990:CDS | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5_1:12054952-12054971 | Msa0717990:intron | 30.0% |
| AAGTTCACTTAAAGATTGGT+AGG | + | chr5_1:12055027-12055046 | None:intergenic | 30.0% | |
| TATAAGAAGGCAAAAGATGT+TGG | - | chr5_1:12055124-12055143 | Msa0717990:exon | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5_1:12055136-12055155 | Msa0717990:exon | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5_1:12055153-12055172 | Msa0717990:five_prime_UTR | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | + | chr5_1:12055179-12055198 | None:intergenic | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | - | chr5_1:12055256-12055275 | Msa0717990:five_prime_UTR | 30.0% |
| CATCTTCATCTTCATCTTCA+TGG | - | chr5_1:12052108-12052127 | Msa0717990:CDS | 35.0% | |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5_1:12052405-12052424 | Msa0717990:intron | 35.0% |
| TGAAAGCTACTCCAATTCTT+AGG | - | chr5_1:12052442-12052461 | Msa0717990:intron | 35.0% | |
| ! | AAGGGTATAAGAATGGTGTT+TGG | - | chr5_1:12052499-12052518 | Msa0717990:intron | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5_1:12052558-12052577 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5_1:12052566-12052585 | Msa0717990:intron | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5_1:12052576-12052595 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5_1:12052574-12052593 | Msa0717990:intron | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5_1:12052741-12052760 | Msa0717990:CDS | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5_1:12052756-12052775 | Msa0717990:CDS | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5_1:12053070-12053089 | Msa0717990:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5_1:12053071-12053090 | Msa0717990:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5_1:12053247-12053266 | Msa0717990:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5_1:12053391-12053410 | Msa0717990:CDS | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5_1:12053411-12053430 | Msa0717990:CDS | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5_1:12053433-12053452 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5_1:12053433-12053452 | Msa0717990:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5_1:12053449-12053468 | Msa0717990:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5_1:12053525-12053544 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5_1:12053543-12053562 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | + | chr5_1:12053615-12053634 | None:intergenic | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | + | chr5_1:12053616-12053635 | None:intergenic | 35.0% | |
| ! | ACTGTTCCACAACATACTTT+TGG | - | chr5_1:12053617-12053636 | Msa0717990:intron | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | + | chr5_1:12053626-12053645 | None:intergenic | 35.0% |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5_1:12053851-12053870 | None:intergenic | 35.0% | |
| TTGAGATCATTAAGCAGGTT+TGG | + | chr5_1:12053856-12053875 | None:intergenic | 35.0% | |
| TCATGTTGAGATCATTAAGC+AGG | + | chr5_1:12053861-12053880 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5_1:12053898-12053917 | None:intergenic | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | - | chr5_1:12054057-12054076 | Msa0717990:intron | 35.0% |
| GAACAACGTGATAATTGACT+GGG | + | chr5_1:12054117-12054136 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5_1:12054305-12054324 | Msa0717990:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5_1:12054314-12054333 | Msa0717990:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5_1:12054422-12054441 | Msa0717990:intron | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5_1:12054458-12054477 | Msa0717990:intron | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5_1:12054497-12054516 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5_1:12054748-12054767 | Msa0717990:CDS | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5_1:12054884-12054903 | Msa0717990:CDS | 35.0% |
| TATAGGCTTCAGTGCATATT+TGG | + | chr5_1:12054945-12054964 | None:intergenic | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | + | chr5_1:12055180-12055199 | None:intergenic | 35.0% | |
| AAATTGAGACCAAGAGATTC+AGG | - | chr5_1:12055192-12055211 | Msa0717990:five_prime_UTR | 35.0% | |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | + | chr5_1:12052078-12052097 | None:intergenic | 40.0% |
| TTCAACAACACCATTCAACC+AGG | - | chr5_1:12052157-12052176 | Msa0717990:CDS | 40.0% | |
| ATTGCATGTACCTGGTTGAA+TGG | + | chr5_1:12052170-12052189 | None:intergenic | 40.0% | |
| !! | TGTGGGGTGTTTTCTGTTTT+TGG | - | chr5_1:12052297-12052316 | Msa0717990:intron | 40.0% |
| !! | GTGGGGTGTTTTCTGTTTTT+GGG | - | chr5_1:12052298-12052317 | Msa0717990:intron | 40.0% |
| !!! | TGGGGTGTTTTCTGTTTTTG+GGG | - | chr5_1:12052299-12052318 | Msa0717990:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5_1:12052371-12052390 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5_1:12052371-12052390 | Msa0717990:intron | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5_1:12053116-12053135 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5_1:12053172-12053191 | Msa0717990:CDS | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5_1:12053432-12053451 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5_1:12053440-12053459 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5_1:12053455-12053474 | Msa0717990:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+TGG | - | chr5_1:12053556-12053575 | Msa0717990:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | + | chr5_1:12053609-12053628 | None:intergenic | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5_1:12053641-12053660 | Msa0717990:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5_1:12053797-12053816 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5_1:12053825-12053844 | Msa0717990:intron | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5_1:12053882-12053901 | Msa0717990:intron | 40.0% |
| GCAAGACTATCTTTAGTGGT+TGG | + | chr5_1:12053969-12053988 | None:intergenic | 40.0% | |
| ACAGGCAAGACTATCTTTAG+TGG | + | chr5_1:12053973-12053992 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5_1:12053991-12054010 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | + | chr5_1:12054021-12054040 | None:intergenic | 40.0% | |
| !!! | GCAGGTTTTGAAAGTTTACC+AGG | - | chr5_1:12054075-12054094 | Msa0717990:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+TGG | + | chr5_1:12054096-12054115 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | + | chr5_1:12054118-12054137 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5_1:12054160-12054179 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5_1:12054357-12054376 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCAGCAAT+TGG | + | chr5_1:12054413-12054432 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5_1:12054441-12054460 | Msa0717990:intron | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5_1:12054520-12054539 | Msa0717990:intron | 40.0% | |
| GCTTCAGTGCATATTTGGAT+TGG | + | chr5_1:12054940-12054959 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5_1:12055075-12055094 | Msa0717990:intron | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5_1:12055076-12055095 | Msa0717990:intron | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | + | chr5_1:12055117-12055136 | None:intergenic | 40.0% | |
| AACATCTTGCCTGAATCTCT+TGG | + | chr5_1:12055204-12055223 | None:intergenic | 40.0% | |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | - | chr5_1:12055213-12055232 | Msa0717990:five_prime_UTR | 40.0% |
| GAGAAGAAGAGTAATGAGCG+AGG | + | chr5_1:12052137-12052156 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | + | chr5_1:12052178-12052197 | None:intergenic | 45.0% | |
| !!! | GGGGTGTTTTCTGTTTTTGG+GGG | - | chr5_1:12052300-12052319 | Msa0717990:intron | 45.0% |
| !!! | GGGTGTTTTCTGTTTTTGGG+GGG | - | chr5_1:12052301-12052320 | Msa0717990:intron | 45.0% |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5_1:12052360-12052379 | Msa0717990:intron | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5_1:12053097-12053116 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5_1:12053096-12053115 | Msa0717990:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5_1:12053256-12053275 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5_1:12053257-12053276 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5_1:12053580-12053599 | Msa0717990:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5_1:12053652-12053671 | Msa0717990:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5_1:12053838-12053857 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5_1:12053928-12053947 | Msa0717990:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5_1:12053981-12054000 | Msa0717990:intron | 45.0% | |
| AGAAGACGAGTCTGAGTTAC+TGG | - | chr5_1:12054026-12054045 | Msa0717990:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5_1:12054471-12054490 | Msa0717990:intron | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5_1:12054887-12054906 | Msa0717990:CDS | 45.0% |
| CAGCCATGGCAGTTATAAGA+AGG | - | chr5_1:12055111-12055130 | Msa0717990:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | + | chr5_1:12052199-12052218 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | + | chr5_1:12052200-12052219 | None:intergenic | 5.0% |
| !!! | AAAATTTGATTTTTTTTTAA+TGG | - | chr5_1:12052236-12052255 | Msa0717990:intron | 5.0% |
| !!! | AAATTTGATTTTTTTTTAAT+GGG | - | chr5_1:12052237-12052256 | Msa0717990:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5_1:12052363-12052382 | Msa0717990:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5_1:12052822-12052841 | Msa0717990:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5_1:12053087-12053106 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5_1:12053085-12053104 | Msa0717990:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5_1:12053111-12053130 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5_1:12053151-12053170 | Msa0717990:intron | 50.0% | |
| GCAGCCACAATTGCAACTGT+AGG | + | chr5_1:12053563-12053582 | None:intergenic | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5_1:12053579-12053598 | Msa0717990:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5_1:12053656-12053675 | Msa0717990:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5_1:12053914-12053933 | Msa0717990:intron | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5_1:12053915-12053934 | Msa0717990:intron | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5_1:12053924-12053943 | Msa0717990:intron | 50.0% | |
| ! | ACGGTGAACCACCGTGATTT+TGG | + | chr5_1:12054898-12054917 | None:intergenic | 50.0% |
| ACACATGACAACATCGCTGC+AGG | - | chr5_1:12055052-12055071 | Msa0717990:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5_1:12055070-12055089 | Msa0717990:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5_1:12055079-12055098 | Msa0717990:intron | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5_1:12055097-12055116 | Msa0717990:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | - | chr5_1:12055163-12055182 | Msa0717990:five_prime_UTR | 50.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | - | chr5_1:12052838-12052857 | Msa0717990:CDS | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5_1:12053922-12053941 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5_1:12054480-12054499 | Msa0717990:intron | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5_1:12054488-12054507 | None:intergenic | 55.0% | |
| CACGGTGGTTCACCGTGATT+CGG | - | chr5_1:12054902-12054921 | Msa0717990:CDS | 55.0% | |
| ACGGTGGTTCACCGTGATTC+GGG | - | chr5_1:12054903-12054922 | Msa0717990:CDS | 55.0% | |
| CGTTGAGACTGCCCGAATCA+CGG | + | chr5_1:12054917-12054936 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | - | chr5_1:12055058-12055077 | Msa0717990:intron | 55.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5_1:12052835-12052854 | Msa0717990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 12051967 | 12055301 | 12051967 | ID=Msa0717990;Name=Msa0717990 |
| chr5_1 | mRNA | 12051967 | 12055301 | 12051967 | ID=Msa0717990-mRNA-1;Parent=Msa0717990;Name=Msa0717990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=160|0.75|0.6|1|1|1|5|0|337 |
| chr5_1 | exon | 12051967 | 12052194 | 12051967 | ID=Msa0717990-mRNA-1:exon:4904;Parent=Msa0717990-mRNA-1 |
| chr5_1 | exon | 12052727 | 12052941 | 12052727 | ID=Msa0717990-mRNA-1:exon:4903;Parent=Msa0717990-mRNA-1 |
| chr5_1 | exon | 12053172 | 12053437 | 12053172 | ID=Msa0717990-mRNA-1:exon:4902;Parent=Msa0717990-mRNA-1 |
| chr5_1 | exon | 12054673 | 12054925 | 12054673 | ID=Msa0717990-mRNA-1:exon:4901;Parent=Msa0717990-mRNA-1 |
| chr5_1 | exon | 12055090 | 12055301 | 12055090 | ID=Msa0717990-mRNA-1:exon:4900;Parent=Msa0717990-mRNA-1 |
| chr5_1 | five_prime_UTR | 12055142 | 12055301 | 12055142 | ID=Msa0717990-mRNA-1:five_prime_utr;Parent=Msa0717990-mRNA-1 |
| chr5_1 | CDS | 12055090 | 12055141 | 12055090 | ID=Msa0717990-mRNA-1:cds;Parent=Msa0717990-mRNA-1 |
| chr5_1 | CDS | 12054673 | 12054925 | 12054673 | ID=Msa0717990-mRNA-1:cds;Parent=Msa0717990-mRNA-1 |
| chr5_1 | CDS | 12053172 | 12053437 | 12053172 | ID=Msa0717990-mRNA-1:cds;Parent=Msa0717990-mRNA-1 |
| chr5_1 | CDS | 12052727 | 12052941 | 12052727 | ID=Msa0717990-mRNA-1:cds;Parent=Msa0717990-mRNA-1 |
| chr5_1 | CDS | 12051967 | 12052194 | 12051967 | ID=Msa0717990-mRNA-1:cds;Parent=Msa0717990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
