Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718010 | XP_003612350.1 | 90.671 | 343 | 19 | 1 | 1 | 343 | 1 | 330 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718010 | sp|O81791|RKD5_ARATH | 50.152 | 329 | 147 | 8 | 1 | 326 | 40 | 354 | 8.47e-93 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718010 | G7K041 | 90.671 | 343 | 19 | 1 | 1 | 343 | 1 | 330 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0718010 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717990 | Msa0718010 | 0.821768 | 3.387332e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718010 | MtrunA17_Chr5g0406901 | 90.671 | 343 | 19 | 1 | 1 | 343 | 1 | 330 | 0.0 | 627 |
| Msa0718010 | MtrunA17_Chr3g0092141 | 34.839 | 155 | 86 | 3 | 181 | 327 | 18 | 165 | 3.06e-22 | 92.4 |
| Msa0718010 | MtrunA17_Chr4g0060761 | 36.090 | 133 | 81 | 1 | 204 | 336 | 145 | 273 | 1.54e-21 | 92.8 |
| Msa0718010 | MtrunA17_Chr3g0127001 | 36.496 | 137 | 67 | 3 | 191 | 327 | 138 | 254 | 1.92e-19 | 86.7 |
| Msa0718010 | MtrunA17_Chr1g0182631 | 37.600 | 125 | 60 | 2 | 203 | 327 | 121 | 227 | 2.41e-18 | 82.8 |
| Msa0718010 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 212 | 296 | 414 | 497 | 1.02e-13 | 72.0 |
| Msa0718010 | MtrunA17_Chr3g0143921 | 40.426 | 94 | 49 | 2 | 181 | 269 | 558 | 649 | 5.54e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718010 | AT4G35590.1 | 50.152 | 329 | 147 | 8 | 1 | 326 | 40 | 354 | 8.61e-94 | 284 |
| Msa0718010 | AT4G35590.2 | 50.476 | 315 | 139 | 8 | 15 | 326 | 4 | 304 | 2.30e-90 | 273 |
| Msa0718010 | AT1G74480.1 | 45.217 | 115 | 58 | 2 | 212 | 324 | 131 | 242 | 5.24e-22 | 94.7 |
| Msa0718010 | AT1G18790.1 | 45.192 | 104 | 54 | 1 | 222 | 325 | 136 | 236 | 5.32e-22 | 94.4 |
| Msa0718010 | AT5G66990.1 | 41.818 | 110 | 60 | 2 | 219 | 327 | 164 | 270 | 8.08e-20 | 88.2 |
| Msa0718010 | AT5G53040.1 | 41.739 | 115 | 54 | 1 | 213 | 327 | 147 | 248 | 1.30e-19 | 87.4 |
| Msa0718010 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 206 | 269 | 346 | 409 | 1.25e-13 | 72.0 |
Find 61 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_1:-12074588 | Msa0718010:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_1:-12074500 | Msa0718010:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5_1:-12076516 | Msa0718010:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_1:-12074438 | Msa0718010:intron |
| TTGAGATCATTAAGCAGGTT+TGG | 0.348731 | 5_1:+12075105 | None:intergenic |
| TTCTTTGACGCTTCAGCAAT+TGG | 0.353848 | 5_1:+12074548 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_1:+12075123 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5_1:-12074932 | Msa0718010:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_1:-12075133 | Msa0718010:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_1:-12075034 | Msa0718010:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_1:+12076381 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5_1:+12076505 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_1:-12074478 | Msa0718010:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5_1:-12076459 | Msa0718010:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_1:+12073673 | None:intergenic |
| GATGAAAATGAAGAAGAAGT+TGG | 0.388638 | 5_1:+12076863 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_1:+12075039 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396954 | 5_1:-12074977 | Msa0718010:CDS |
| CATAGAGAAGAGGCTCTTCA+TGG | 0.402183 | 5_1:-12073791 | Msa0718010:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_1:+12076590 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_1:-12074535 | Msa0718010:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 5_1:+12073840 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_1:-12073818 | Msa0718010:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_1:-12074517 | Msa0718010:CDS |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 5_1:+12073753 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5_1:+12074940 | None:intergenic |
| ACAGGCAAGACTATCTTTAG+TGG | 0.485270 | 5_1:+12074988 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_1:-12074487 | Msa0718010:CDS |
| AGAAGTTGGAGAAAGTATGA+AGG | 0.492347 | 5_1:+12076877 | None:intergenic |
| TCATGTTGAGATCATTAAGC+AGG | 0.496279 | 5_1:+12075100 | None:intergenic |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 5_1:-12073843 | Msa0718010:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5_1:-12073884 | Msa0718010:intron |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.504221 | 5_1:+12075110 | None:intergenic |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_1:-12073830 | Msa0718010:CDS |
| GCAAGACTATCTTTAGTGGT+TGG | 0.512102 | 5_1:+12074992 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_1:-12076587 | Msa0718010:CDS |
| TCTCAACATGATATACAAGT+TGG | 0.522938 | 5_1:-12075088 | Msa0718010:CDS |
| AATTGGCATATCAAAGTACT+TGG | 0.526594 | 5_1:+12074565 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_1:+12074604 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_1:+12076404 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_1:-12075076 | Msa0718010:CDS |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_1:-12073878 | Msa0718010:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 5_1:+12073667 | None:intergenic |
| GCGTCAAAGAATCTAAATGT+TGG | 0.549395 | 5_1:-12074536 | Msa0718010:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_1:+12076403 | None:intergenic |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_1:-12073879 | Msa0718010:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 5_1:-12073801 | Msa0718010:CDS |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_1:+12076824 | None:intergenic |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_1:-12073857 | Msa0718010:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_1:+12074464 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5_1:+12074970 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_1:-12073875 | Msa0718010:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_1:-12075043 | Msa0718010:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_1:-12076598 | Msa0718010:CDS |
| GGAGCATTTGAATCTAAACC+CGG | 0.637510 | 5_1:+12074865 | None:intergenic |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_1:-12075044 | Msa0718010:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_1:+12074597 | None:intergenic |
| TTCAACAACACTATTCAACC+AGG | 0.665257 | 5_1:-12076801 | Msa0718010:intron |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_1:+12074473 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_1:-12075030 | Msa0718010:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_1:-12076595 | Msa0718010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | - | chr5_1:12075871-12075890 | Msa0718010:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5_1:12076246-12076265 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5_1:12074309-12074328 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5_1:12074310-12074329 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5_1:12074337-12074356 | Msa0718010:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | - | chr5_1:12075879-12075898 | Msa0718010:intron | 15.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5_1:12074336-12074355 | Msa0718010:intron | 20.0% |
| !! | TGTATAAAATGTTGTGAAAT+AGG | - | chr5_1:12074496-12074515 | Msa0718010:CDS | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5_1:12074818-12074837 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5_1:12074892-12074911 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5_1:12074893-12074912 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5_1:12075077-12075096 | Msa0718010:CDS | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5_1:12075460-12075479 | Msa0718010:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | + | chr5_1:12075866-12075885 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5_1:12076021-12076040 | Msa0718010:intron | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5_1:12076063-12076082 | Msa0718010:intron | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5_1:12076406-12076425 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5_1:12076431-12076450 | Msa0718010:CDS | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5_1:12076557-12076576 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5_1:12076659-12076678 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTGTTTTGTTTG+TGG | - | chr5_1:12073971-12073990 | Msa0718010:intron | 25.0% |
| !!! | TTTGTTGTTGTTTTGTTTGT+GGG | - | chr5_1:12073972-12073991 | Msa0718010:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5_1:12074174-12074193 | Msa0718010:intron | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5_1:12074185-12074204 | Msa0718010:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5_1:12074401-12074420 | Msa0718010:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5_1:12074819-12074838 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5_1:12075035-12075054 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5_1:12075502-12075521 | Msa0718010:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5_1:12075955-12075974 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5_1:12076020-12076039 | Msa0718010:intron | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5_1:12076057-12076076 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5_1:12076320-12076339 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5_1:12076345-12076364 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5_1:12076395-12076414 | Msa0718010:CDS | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | + | chr5_1:12076474-12076493 | None:intergenic | 25.0% |
| ! | TAAGAAGTTCACTTAAAGAT+TGG | + | chr5_1:12076728-12076747 | None:intergenic | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | - | chr5_1:12073691-12073710 | Msa0718010:CDS | 30.0% | |
| GATGAAAATGAAGAAGAAGT+TGG | + | chr5_1:12073791-12073810 | None:intergenic | 30.0% | |
| ! | CATTTTCATCTTCATCTTCA+TGG | - | chr5_1:12073801-12073820 | Msa0718010:CDS | 30.0% |
| !!! | TTGTTGTTGTTTTGTTTGTG+GGG | - | chr5_1:12073973-12073992 | Msa0718010:intron | 30.0% |
| GATTTCAACAACCTAAGAAT+TGG | + | chr5_1:12074149-12074168 | None:intergenic | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5_1:12074173-12074192 | Msa0718010:intron | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5_1:12074250-12074269 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5_1:12074273-12074292 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5_1:12074346-12074365 | Msa0718010:intron | 30.0% |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5_1:12074407-12074426 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5_1:12074410-12074429 | Msa0718010:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | + | chr5_1:12074483-12074502 | None:intergenic | 30.0% | |
| TTGTGAAATAGGAACTATAG+CGG | - | chr5_1:12074507-12074526 | Msa0718010:CDS | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5_1:12074670-12074689 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5_1:12075103-12075122 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5_1:12075328-12075347 | Msa0718010:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5_1:12075329-12075348 | Msa0718010:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5_1:12075498-12075517 | None:intergenic | 30.0% | |
| TCTCAACATGATATACAAGT+TGG | - | chr5_1:12075563-12075582 | Msa0718010:intron | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5_1:12075832-12075851 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5_1:12075938-12075957 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5_1:12076089-12076108 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5_1:12076116-12076135 | Msa0718010:intron | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | - | chr5_1:12076498-12076517 | Msa0718010:CDS | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5_1:12076649-12076668 | Msa0718010:intron | 30.0% |
| AAGTTCACTTAAAGATTGGT+AGG | + | chr5_1:12076724-12076743 | None:intergenic | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5_1:12076833-12076852 | Msa0718010:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5_1:12076850-12076869 | Msa0718010:exon | 30.0% | |
| !!! | TTTCGTTTGTTTTTGGATCG+AGG | + | chr5_1:12073687-12073706 | None:intergenic | 35.0% |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | + | chr5_1:12073694-12073713 | None:intergenic | 35.0% |
| ! | AGAAGTTGGAGAAAGTATGA+AGG | + | chr5_1:12073777-12073796 | None:intergenic | 35.0% |
| TTCAACAACACTATTCAACC+AGG | - | chr5_1:12073850-12073869 | Msa0718010:CDS | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | - | chr5_1:12073989-12074008 | Msa0718010:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | - | chr5_1:12073990-12074009 | Msa0718010:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | - | chr5_1:12073991-12074010 | Msa0718010:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5_1:12074098-12074117 | Msa0718010:intron | 35.0% |
| TGAAAGCTACTCCAATTCTT+AGG | - | chr5_1:12074135-12074154 | Msa0718010:intron | 35.0% | |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5_1:12074192-12074211 | Msa0718010:intron | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5_1:12074251-12074270 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5_1:12074259-12074278 | Msa0718010:intron | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5_1:12074269-12074288 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5_1:12074267-12074286 | Msa0718010:intron | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5_1:12074434-12074453 | Msa0718010:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5_1:12074449-12074468 | Msa0718010:CDS | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5_1:12074763-12074782 | Msa0718010:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5_1:12074764-12074783 | Msa0718010:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5_1:12074940-12074959 | Msa0718010:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5_1:12075084-12075103 | Msa0718010:CDS | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5_1:12075104-12075123 | Msa0718010:CDS | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5_1:12075126-12075145 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5_1:12075126-12075145 | Msa0718010:CDS | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5_1:12075142-12075161 | Msa0718010:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5_1:12075218-12075237 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5_1:12075236-12075255 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | + | chr5_1:12075308-12075327 | None:intergenic | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | + | chr5_1:12075309-12075328 | None:intergenic | 35.0% | |
| ! | ACTGTTCCACAACATACTTT+TGG | - | chr5_1:12075310-12075329 | Msa0718010:intron | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | + | chr5_1:12075319-12075338 | None:intergenic | 35.0% |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5_1:12075544-12075563 | None:intergenic | 35.0% | |
| TTGAGATCATTAAGCAGGTT+TGG | + | chr5_1:12075549-12075568 | None:intergenic | 35.0% | |
| TCATGTTGAGATCATTAAGC+AGG | + | chr5_1:12075554-12075573 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5_1:12075591-12075610 | None:intergenic | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | - | chr5_1:12075750-12075769 | Msa0718010:intron | 35.0% |
| GAACAACGTGATAATTGACT+GGG | + | chr5_1:12075810-12075829 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5_1:12075998-12076017 | Msa0718010:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5_1:12076007-12076026 | Msa0718010:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5_1:12076115-12076134 | Msa0718010:intron | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5_1:12076151-12076170 | Msa0718010:intron | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5_1:12076190-12076209 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5_1:12076445-12076464 | Msa0718010:CDS | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5_1:12076581-12076600 | Msa0718010:CDS | 35.0% |
| TATAGGCTTCAGTGCATATT+TGG | + | chr5_1:12076642-12076661 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | - | chr5_1:12076821-12076840 | Msa0718010:CDS | 35.0% | |
| AACATCTTGTCTGAATCTCT+TGG | + | chr5_1:12076901-12076920 | None:intergenic | 35.0% | |
| !! | GACAAGATGTTTTCAAGAGA+AGG | - | chr5_1:12076910-12076929 | Msa0718010:five_prime_UTR | 35.0% |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | - | chr5_1:12073992-12074011 | Msa0718010:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | - | chr5_1:12073993-12074012 | Msa0718010:intron | 40.0% |
| !!! | GGTGTTTTTTGTTTTTGGGG+GGG | - | chr5_1:12073994-12074013 | Msa0718010:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5_1:12074064-12074083 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5_1:12074064-12074083 | Msa0718010:intron | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5_1:12074809-12074828 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5_1:12074865-12074884 | Msa0718010:CDS | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5_1:12075125-12075144 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5_1:12075133-12075152 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5_1:12075148-12075167 | Msa0718010:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5_1:12075249-12075268 | Msa0718010:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | + | chr5_1:12075302-12075321 | None:intergenic | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5_1:12075334-12075353 | Msa0718010:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5_1:12075490-12075509 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5_1:12075518-12075537 | Msa0718010:intron | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5_1:12075575-12075594 | Msa0718010:intron | 40.0% |
| GCAAGACTATCTTTAGTGGT+TGG | + | chr5_1:12075662-12075681 | None:intergenic | 40.0% | |
| ACAGGCAAGACTATCTTTAG+TGG | + | chr5_1:12075666-12075685 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5_1:12075684-12075703 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | + | chr5_1:12075714-12075733 | None:intergenic | 40.0% | |
| !!! | AGCAGGTTTTGAAAGTTCAC+CGG | - | chr5_1:12075767-12075786 | Msa0718010:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+CGG | + | chr5_1:12075789-12075808 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | + | chr5_1:12075811-12075830 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5_1:12075853-12075872 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5_1:12076050-12076069 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCAGCAAT+TGG | + | chr5_1:12076106-12076125 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5_1:12076134-12076153 | Msa0718010:intron | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5_1:12076213-12076232 | Msa0718010:intron | 40.0% | |
| GCTTCAGTGCATATTTGGAT+TGG | + | chr5_1:12076637-12076656 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5_1:12076772-12076791 | Msa0718010:intron | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5_1:12076773-12076792 | Msa0718010:intron | 40.0% | |
| GAGAAGAAGAGTAATGAGCG+AGG | + | chr5_1:12073830-12073849 | None:intergenic | 45.0% | |
| GGTCTTGCATTGTATGTACC+TGG | + | chr5_1:12073871-12073890 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5_1:12074053-12074072 | Msa0718010:intron | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5_1:12074790-12074809 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5_1:12074789-12074808 | Msa0718010:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5_1:12074949-12074968 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5_1:12074950-12074969 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5_1:12075273-12075292 | Msa0718010:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5_1:12075345-12075364 | Msa0718010:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5_1:12075531-12075550 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5_1:12075621-12075640 | Msa0718010:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5_1:12075674-12075693 | Msa0718010:intron | 45.0% | |
| AGAAGACGAGTCTGAGTTAC+TGG | - | chr5_1:12075719-12075738 | Msa0718010:intron | 45.0% | |
| !!! | GCAGGTTTTGAAAGTTCACC+GGG | - | chr5_1:12075768-12075787 | Msa0718010:intron | 45.0% |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5_1:12076164-12076183 | Msa0718010:intron | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5_1:12076584-12076603 | Msa0718010:CDS | 45.0% |
| TTGCCTTCTTATCACTGCCA+TGG | + | chr5_1:12076814-12076833 | None:intergenic | 45.0% | |
| CATAGAGAAGAGGCTCTTCA+TGG | - | chr5_1:12076860-12076879 | Msa0718010:five_prime_UTR | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | + | chr5_1:12073892-12073911 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | + | chr5_1:12073893-12073912 | None:intergenic | 5.0% |
| !!! | AAAATTTTGATTTTTTTTAA+TGG | - | chr5_1:12073928-12073947 | Msa0718010:intron | 5.0% |
| !!! | AAATTTTGATTTTTTTTAAT+GGG | - | chr5_1:12073929-12073948 | Msa0718010:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5_1:12074056-12074075 | Msa0718010:intron | 50.0% | |
| TAGGAACTATAGCGGCGCTA+TGG | - | chr5_1:12074515-12074534 | Msa0718010:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5_1:12074780-12074799 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5_1:12074778-12074797 | Msa0718010:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5_1:12074804-12074823 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5_1:12074844-12074863 | Msa0718010:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5_1:12075272-12075291 | Msa0718010:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5_1:12075349-12075368 | Msa0718010:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5_1:12075607-12075626 | Msa0718010:intron | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5_1:12075608-12075627 | Msa0718010:intron | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5_1:12075617-12075636 | Msa0718010:intron | 50.0% | |
| ! | ACGGTGAACCACCGTGATTT+TGG | + | chr5_1:12076595-12076614 | None:intergenic | 50.0% |
| ACACATGACAACATCGCTGC+AGG | - | chr5_1:12076749-12076768 | Msa0718010:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5_1:12076767-12076786 | Msa0718010:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5_1:12076776-12076795 | Msa0718010:intron | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5_1:12076794-12076813 | Msa0718010:intron | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | - | chr5_1:12076808-12076827 | Msa0718010:CDS | 50.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | - | chr5_1:12074531-12074550 | Msa0718010:CDS | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | + | chr5_1:12075256-12075275 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5_1:12075615-12075634 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5_1:12076173-12076192 | Msa0718010:intron | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5_1:12076181-12076200 | None:intergenic | 55.0% | |
| CACGGTGGTTCACCGTGATT+CGG | - | chr5_1:12076599-12076618 | Msa0718010:CDS | 55.0% | |
| ACGGTGGTTCACCGTGATTC+GGG | - | chr5_1:12076600-12076619 | Msa0718010:CDS | 55.0% | |
| CGTTGAGACTGCCCGAATCA+CGG | + | chr5_1:12076614-12076633 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | - | chr5_1:12076755-12076774 | Msa0718010:intron | 55.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5_1:12074528-12074547 | Msa0718010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 12073678 | 12076995 | 12073678 | ID=Msa0718010;Name=Msa0718010 |
| chr5_1 | mRNA | 12073678 | 12076995 | 12073678 | ID=Msa0718010-mRNA-1;Parent=Msa0718010;Name=Msa0718010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=142|0.75|0.6|1|1|1|5|0|343 |
| chr5_1 | exon | 12073678 | 12073902 | 12073678 | ID=Msa0718010-mRNA-1:exon:4899;Parent=Msa0718010-mRNA-1 |
| chr5_1 | exon | 12074439 | 12074653 | 12074439 | ID=Msa0718010-mRNA-1:exon:4898;Parent=Msa0718010-mRNA-1 |
| chr5_1 | exon | 12074863 | 12075149 | 12074863 | ID=Msa0718010-mRNA-1:exon:4897;Parent=Msa0718010-mRNA-1 |
| chr5_1 | exon | 12076385 | 12076637 | 12076385 | ID=Msa0718010-mRNA-1:exon:4896;Parent=Msa0718010-mRNA-1 |
| chr5_1 | exon | 12076802 | 12076995 | 12076802 | ID=Msa0718010-mRNA-1:exon:4895;Parent=Msa0718010-mRNA-1 |
| chr5_1 | five_prime_UTR | 12076854 | 12076995 | 12076854 | ID=Msa0718010-mRNA-1:five_prime_utr;Parent=Msa0718010-mRNA-1 |
| chr5_1 | CDS | 12076802 | 12076853 | 12076802 | ID=Msa0718010-mRNA-1:cds;Parent=Msa0718010-mRNA-1 |
| chr5_1 | CDS | 12076385 | 12076637 | 12076385 | ID=Msa0718010-mRNA-1:cds;Parent=Msa0718010-mRNA-1 |
| chr5_1 | CDS | 12074863 | 12075149 | 12074863 | ID=Msa0718010-mRNA-1:cds;Parent=Msa0718010-mRNA-1 |
| chr5_1 | CDS | 12074439 | 12074653 | 12074439 | ID=Msa0718010-mRNA-1:cds;Parent=Msa0718010-mRNA-1 |
| chr5_1 | CDS | 12073678 | 12073902 | 12073678 | ID=Msa0718010-mRNA-1:cds;Parent=Msa0718010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
