AlfalfaGEDB | Msa0718420

M. sativa cultivar zhongmu-4 / Msa0718420

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718420	XP_003612426.2	94.549	477	26	0	1	477	1	477	0.0	929

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718420	sp\|Q940Y3\|ARID3_ARATH	69.634	191	56	1	294	484	480	668	2.64e-84	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718420	G7K2M1	94.549	477	26	0	1	477	1	477	0.0	929

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TFs/TRs:

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Gene ID	Type	Classification
Msa0718420	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0718420	Msa0801080	0.830419	2.968035e-55	-8.615850e-47
Msa0718420	Msa0839470	0.981904	9.720940e-154	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718420	MtrunA17_Chr5g0407561	94.549	477	26	0	1	477	1	477	0.0	929
Msa0718420	MtrunA17_Chr3g0144341	51.899	237	88	2	247	478	32	247	3.73e-67	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718420	AT2G17410.1	69.634	191	56	1	294	484	480	668	2.68e-85	280
Msa0718420	AT2G17410.3	69.634	191	56	1	294	484	480	668	2.68e-85	280
Msa0718420	AT2G17410.2	69.634	191	56	1	294	484	480	668	3.01e-85	279
Msa0718420	AT1G76510.2	57.865	178	69	2	305	477	137	313	4.38e-59	201
Msa0718420	AT1G76510.4	57.865	178	69	2	305	477	137	313	4.38e-59	201
Msa0718420	AT1G76510.1	57.865	178	69	2	305	477	137	313	4.38e-59	201
Msa0718420	AT1G20910.1	56.742	178	71	2	305	477	101	277	1.89e-57	196
Msa0718420	AT1G20910.2	56.742	178	71	2	305	477	101	277	2.45e-57	196
Msa0718420	AT1G76510.3	51.244	201	69	3	305	477	137	336	2.71e-53	187

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Find 203 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAAGGTTGTTTCAGA+AGG	0.546742	5_1:-12669229	Msa0718420:CDS
AAACTTCCTCTGAGTAGTAA+CGG	0.584178	5_1:-12669088	Msa0718420:CDS
AAATGAGTCGGGAACAGAAG+AGG	0.595188	5_1:-12668621	Msa0718420:CDS
AAATGATGTTAAAATTGGGA+AGG	0.607157	5_1:-12669281	Msa0718420:CDS
AACACCTTCTGAAACAACCT+TGG	0.483020	5_1:+12669225	None:intergenic
AACAGCCGCTTCACAGACTT+CGG	0.465197	5_1:+12668982	None:intergenic
AACATATGTGGCTGCTAGGT+TGG	0.437374	5_1:-12663755	Msa0718420:three_prime_UTR
AACATGTTCTGCGGCGAATC+TGG	0.212068	5_1:+12668674	None:intergenic
AACCGGCCTCTGATGATACA+AGG	0.594824	5_1:-12668775	Msa0718420:CDS
AACCTCAAACAGCACAATTT+AGG	0.201766	5_1:-12670466	Msa0718420:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCAGCGTATCCAATTTA+GGG	-	chr5_1:12662423-12662442	Msa0718420:three_prime_UTR	30.0%
ATCTACTTATAGAACAACCA+TGG	+	chr5_1:12662628-12662647	None:intergenic	30.0%
AGGGTTTAGTATTAATAGCA+AGG	-	chr5_1:12662656-12662675	Msa0718420:three_prime_UTR	30.0%
TGGTGATATTGAAATGATAG+CGG	-	chr5_1:12663826-12663845	Msa0718420:three_prime_UTR	30.0%
AGGTTCATTTGTATTAGAAG+AGG	+	chr5_1:12664020-12664039	None:intergenic	30.0%
TCGTTATGATTTGACAGTAT+AGG	+	chr5_1:12664040-12664059	None:intergenic	30.0%
GATGCTGATCATTATTATGA+CGG	-	chr5_1:12664205-12664224	Msa0718420:intron	30.0%
AGCCATTCTCCATAAAATTT+GGG	+	chr5_1:12664319-12664338	None:intergenic	30.0%
AAGCCATTCTCCATAAAATT+TGG	+	chr5_1:12664320-12664339	None:intergenic	30.0%
CAACATAGATAACTCACTTA+AGG	+	chr5_1:12664348-12664367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	12662233	12670638	12662233	ID=Msa0718420;Name=Msa0718420
chr5_1	mRNA	12662233	12670638	12662233	ID=Msa0718420-mRNA-1;Parent=Msa0718420;Name=Msa0718420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=297\|0.90\|0.91\|1\|0.81\|0.75\|12\|845\|503
chr5_1	exon	12662233	12662695	12662233	ID=Msa0718420-mRNA-1:exon:5159;Parent=Msa0718420-mRNA-1
chr5_1	exon	12662814	12662906	12662814	ID=Msa0718420-mRNA-1:exon:5158;Parent=Msa0718420-mRNA-1
chr5_1	exon	12663557	12663607	12663557	ID=Msa0718420-mRNA-1:exon:5157;Parent=Msa0718420-mRNA-1
chr5_1	exon	12663693	12664011	12663693	ID=Msa0718420-mRNA-1:exon:5156;Parent=Msa0718420-mRNA-1
chr5_1	exon	12664107	12664163	12664107	ID=Msa0718420-mRNA-1:exon:5155;Parent=Msa0718420-mRNA-1
chr5_1	exon	12664253	12664360	12664253	ID=Msa0718420-mRNA-1:exon:5154;Parent=Msa0718420-mRNA-1
chr5_1	exon	12665364	12665456	12665364	ID=Msa0718420-mRNA-1:exon:5153;Parent=Msa0718420-mRNA-1
chr5_1	exon	12666702	12666747	12666702	ID=Msa0718420-mRNA-1:exon:5152;Parent=Msa0718420-mRNA-1
chr5_1	exon	12667511	12667563	12667511	ID=Msa0718420-mRNA-1:exon:5151;Parent=Msa0718420-mRNA-1
chr5_1	exon	12668369	12668408	12668369	ID=Msa0718420-mRNA-1:exon:5150;Parent=Msa0718420-mRNA-1
chr5_1	exon	12668521	12669589	12668521	ID=Msa0718420-mRNA-1:exon:5149;Parent=Msa0718420-mRNA-1
chr5_1	exon	12670377	12670638	12670377	ID=Msa0718420-mRNA-1:exon:5148;Parent=Msa0718420-mRNA-1
chr5_1	five_prime_UTR	12670377	12670638	12670377	ID=Msa0718420-mRNA-1:five_prime_utr;Parent=Msa0718420-mRNA-1
chr5_1	five_prime_UTR	12669555	12669589	12669555	ID=Msa0718420-mRNA-1:five_prime_utr;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12668521	12669554	12668521	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12668369	12668408	12668369	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12667511	12667563	12667511	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12666702	12666747	12666702	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12665364	12665456	12665364	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12664253	12664360	12664253	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12664107	12664163	12664107	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	CDS	12663931	12664011	12663931	ID=Msa0718420-mRNA-1:cds;Parent=Msa0718420-mRNA-1
chr5_1	three_prime_UTR	12663693	12663930	12663693	ID=Msa0718420-mRNA-1:three_prime_utr;Parent=Msa0718420-mRNA-1
chr5_1	three_prime_UTR	12663557	12663607	12663557	ID=Msa0718420-mRNA-1:three_prime_utr;Parent=Msa0718420-mRNA-1
chr5_1	three_prime_UTR	12662814	12662906	12662814	ID=Msa0718420-mRNA-1:three_prime_utr;Parent=Msa0718420-mRNA-1
chr5_1	three_prime_UTR	12662233	12662695	12662233	ID=Msa0718420-mRNA-1:three_prime_utr;Parent=Msa0718420-mRNA-1

Gene Sequence

>Msa0718420

ATGAGTGATACAAAAGAAAACGACGAAGTGGGTCAGGGTGTTCCGGCGAATGTTAATGTAGAGGAAGCTGACTATGTCATTGTTGAAAATGAAAATTCAAATCAAGCTTCAACTAGTCCACAATTAGGAGATGATGATGAGATGATTATTGATAATCTTGCTGGTTTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCGGTTACTGTAGAGGAAACTTCAAAGAATGTTGAAAATGTGTCAAATGATGTTAAAATTGGGAAGGAAGAGGTGCATGCTGAGGATGAAAATGTGAAACCCAAGGTTGTTTCAGAAGGTGTTTCACAAGAAAATGTTCAAGATACCCTTCACACGGTTCCAGTTGAGGCGGCTGATGCTCATATTTTGGATACAGCTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCAAAAAACTTCCTCTGAGTAGTAACGGTGTTGAGAATGATGGTATTGCATGTCAAAATAATGTTAGTGATGGTGATATTGAAATGATAGCGGTGGAGGTTGAGGTGAAGCCCGAAGTCTGTGAAGCGGCTGTTAGTAAAGCTTGTGAAGTTGAACCTATATCGTTGAGTAATAACAATCCTACTACACCACAACCTGCCTCTTCTGATGCAAATGAACCTATACTGTCAAATCATAATGATCCTACTACACCACAACCTGCCTCTTCTAATACAAATGAACCTATACTGTCAAATCATAACGATCCTACTACACCACAACCGGCCTCTGATGATACAAGGCCAGAAGTCAAGAATGTTTTAGAAGTTGAAAGTAAGGGTGGTGAAGAGCAAGTTGCTGAGCCTGTAGATAATGAAAACCCAGATTCGCCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGACGGAAATGAGTCGGGAACAGAAGAGGACCAAGCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGACTTCAAACCTCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGGTTGGGAGGCTATGAGAAGGTAACCTCATGTAAGTTGTGGCGGAGTGTGGGAGAGTCTTTCAAACCCCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGCGGCGAGCTGAATGTACCTGTCACATCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGGTTTAGCATCAGGTAGATCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTGGTGACCCTATTATAAAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAGTATGATGTACCTAAACGTAAGAGCCCATCTTATATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCGTCAAGACCACAGTTAA

Protein sequence

>Msa0718420

MSDTKENDEVGQGVPANVNVEEADYVIVENENSNQASTSPQLGDDDEMIIDNLAGLDSYLDQEMHLEVQPVTVEETSKNVENVSNDVKIGKEEVHAEDENVKPKVVSEGVSQENVQDTLHTVPVEAADAHILDTAEGEDASDVKVDAKKLPLSSNGVENDGIACQNNVSDGDIEMIAVEVEVKPEVCEAAVSKACEVEPISLSNNNPTTPQPASSDANEPILSNHNDPTTPQPASSNTNEPILSNHNDPTTPQPASDDTRPEVKNVLEVESKGGEEQVAEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPVTSPPEPVNVENQGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREKQLKSISMMYLNVRAHLIWIMQSKQHGVNRQDHS*