Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719570 | XP_039690071.1 | 95.485 | 598 | 20 | 2 | 1 | 598 | 144 | 734 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719570 | A0A2K3P756 | 85.403 | 596 | 83 | 2 | 1 | 594 | 8 | 601 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719570 | Msa0802550 | 0.840174 | 1.019102e-57 | -8.615850e-47 |
| Msa0719570 | Msa0840940 | 0.871819 | 5.110882e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719570 | MtrunA17_Chr5g0410341 | 74.917 | 606 | 138 | 6 | 1 | 597 | 146 | 746 | 0.0 | 914 |
| Msa0719570 | MtrunA17_Chr5g0410171 | 74.338 | 604 | 126 | 4 | 1 | 596 | 151 | 733 | 0.0 | 895 |
| Msa0719570 | MtrunA17_Chr5g0410271 | 98.471 | 327 | 5 | 0 | 272 | 598 | 2 | 328 | 0.0 | 661 |
| Msa0719570 | MtrunA17_Chr5g0410201 | 93.617 | 329 | 21 | 0 | 270 | 598 | 1 | 329 | 0.0 | 634 |
| Msa0719570 | MtrunA17_Chr6g0456101 | 46.296 | 594 | 285 | 10 | 4 | 590 | 168 | 734 | 1.94e-162 | 482 |
| Msa0719570 | MtrunA17_Chr6g0457101 | 44.908 | 599 | 269 | 10 | 4 | 595 | 142 | 686 | 1.55e-156 | 465 |
| Msa0719570 | MtrunA17_Chr5g0410461 | 52.258 | 465 | 179 | 9 | 170 | 594 | 1 | 462 | 1.23e-146 | 432 |
| Msa0719570 | MtrunA17_Chr5g0410581 | 43.333 | 630 | 299 | 16 | 4 | 595 | 186 | 795 | 1.55e-146 | 443 |
| Msa0719570 | MtrunA17_Chr6g0456141 | 57.022 | 356 | 146 | 4 | 244 | 595 | 30 | 382 | 1.91e-138 | 408 |
| Msa0719570 | MtrunA17_Chr5g0410371 | 66.554 | 296 | 93 | 2 | 303 | 594 | 1 | 294 | 1.47e-128 | 379 |
| Msa0719570 | MtrunA17_Chr5g0410291 | 93.122 | 189 | 9 | 1 | 1 | 189 | 8 | 192 | 6.43e-125 | 366 |
| Msa0719570 | MtrunA17_Chr5g0410211 | 81.579 | 190 | 34 | 1 | 1 | 189 | 8 | 197 | 1.91e-107 | 321 |
| Msa0719570 | MtrunA17_Chr5g0410191 | 81.771 | 192 | 35 | 0 | 406 | 597 | 2 | 193 | 3.75e-106 | 318 |
| Msa0719570 | MtrunA17_Chr5g0443001 | 35.176 | 597 | 317 | 16 | 8 | 594 | 65 | 601 | 8.46e-82 | 268 |
| Msa0719570 | MtrunA17_Chr5g0410181 | 85.185 | 135 | 20 | 0 | 464 | 598 | 1 | 135 | 3.24e-75 | 236 |
| Msa0719570 | MtrunA17_Chr2g0297701 | 32.620 | 561 | 303 | 20 | 66 | 597 | 58 | 572 | 4.14e-69 | 234 |
| Msa0719570 | MtrunA17_Chr2g0297701 | 34.568 | 162 | 89 | 6 | 12 | 173 | 83 | 227 | 3.38e-12 | 69.3 |
| Msa0719570 | MtrunA17_Chr3g0100741 | 30.570 | 579 | 327 | 14 | 8 | 577 | 67 | 579 | 4.40e-68 | 232 |
| Msa0719570 | MtrunA17_Chr2g0297491 | 38.218 | 348 | 191 | 5 | 248 | 594 | 53 | 377 | 6.36e-64 | 215 |
| Msa0719570 | MtrunA17_Chr5g0410541 | 52.381 | 210 | 89 | 5 | 391 | 595 | 13 | 216 | 1.77e-62 | 206 |
| Msa0719570 | MtrunA17_Chr5g0410451 | 48.515 | 202 | 99 | 1 | 399 | 595 | 34 | 235 | 2.73e-60 | 200 |
| Msa0719570 | MtrunA17_Chr3g0096941 | 29.661 | 590 | 341 | 15 | 8 | 586 | 67 | 593 | 4.84e-59 | 207 |
| Msa0719570 | MtrunA17_Chr2g0297481 | 38.796 | 299 | 171 | 5 | 303 | 598 | 186 | 475 | 1.22e-56 | 198 |
| Msa0719570 | MtrunA17_Chr3g0100301 | 48.469 | 196 | 94 | 1 | 395 | 590 | 209 | 397 | 1.41e-55 | 193 |
| Msa0719570 | MtrunA17_Chr2g0297681 | 39.590 | 293 | 172 | 4 | 303 | 593 | 399 | 688 | 2.21e-55 | 199 |
| Msa0719570 | MtrunA17_Chr2g0297691 | 38.926 | 298 | 169 | 6 | 303 | 594 | 401 | 691 | 4.40e-54 | 196 |
| Msa0719570 | MtrunA17_Chr2g0297651 | 38.567 | 293 | 176 | 3 | 303 | 594 | 401 | 690 | 3.27e-53 | 193 |
| Msa0719570 | MtrunA17_Chr2g0297711 | 35.811 | 296 | 186 | 3 | 304 | 597 | 236 | 529 | 8.22e-53 | 189 |
| Msa0719570 | MtrunA17_Chr5g0410381 | 48.780 | 205 | 82 | 2 | 5 | 188 | 39 | 241 | 6.12e-51 | 176 |
| Msa0719570 | MtrunA17_Chr2g0286551 | 28.056 | 638 | 377 | 18 | 10 | 590 | 42 | 654 | 1.44e-49 | 182 |
| Msa0719570 | MtrunA17_Chr2g0284501 | 26.603 | 624 | 387 | 17 | 12 | 588 | 49 | 648 | 1.72e-46 | 174 |
| Msa0719570 | MtrunA17_Chr3g0098481 | 32.803 | 314 | 198 | 5 | 290 | 594 | 22 | 331 | 1.54e-43 | 159 |
| Msa0719570 | MtrunA17_Chr2g0286601 | 35.836 | 293 | 177 | 4 | 285 | 576 | 371 | 653 | 1.56e-42 | 162 |
| Msa0719570 | MtrunA17_Chr5g0410501 | 39.535 | 258 | 139 | 8 | 157 | 405 | 39 | 288 | 2.18e-40 | 149 |
| Msa0719570 | MtrunA17_Chr2g0284541 | 27.184 | 618 | 383 | 15 | 12 | 588 | 39 | 630 | 7.17e-40 | 154 |
| Msa0719570 | MtrunA17_Chr5g0410511 | 41.026 | 195 | 110 | 1 | 406 | 595 | 2 | 196 | 1.48e-39 | 143 |
| Msa0719570 | MtrunA17_Chr3g0102001 | 31.699 | 306 | 188 | 4 | 302 | 595 | 440 | 736 | 6.69e-36 | 143 |
| Msa0719570 | MtrunA17_Chr3g0102001 | 30.583 | 206 | 117 | 6 | 2 | 191 | 44 | 239 | 7.33e-14 | 74.7 |
| Msa0719570 | MtrunA17_Chr3g0098301 | 28.743 | 334 | 217 | 6 | 275 | 590 | 63 | 393 | 7.23e-35 | 136 |
| Msa0719570 | MtrunA17_Chr2g0286561 | 36.628 | 172 | 102 | 1 | 405 | 576 | 14 | 178 | 1.80e-30 | 119 |
| Msa0719570 | MtrunA17_Chr5g0410411 | 50.360 | 139 | 66 | 2 | 1 | 138 | 174 | 310 | 9.37e-30 | 120 |
| Msa0719570 | MtrunA17_Chr3g0098531 | 31.489 | 235 | 156 | 3 | 362 | 592 | 48 | 281 | 1.72e-29 | 118 |
| Msa0719570 | MtrunA17_Chr5g0439061 | 31.959 | 291 | 192 | 4 | 304 | 590 | 438 | 726 | 6.84e-29 | 122 |
| Msa0719570 | MtrunA17_Chr5g0439061 | 30.846 | 201 | 112 | 8 | 5 | 191 | 52 | 239 | 7.84e-11 | 65.1 |
| Msa0719570 | MtrunA17_Chr5g0410471 | 57.944 | 107 | 43 | 1 | 1 | 107 | 208 | 312 | 3.60e-27 | 112 |
| Msa0719570 | MtrunA17_Chr6g0456151 | 47.761 | 134 | 59 | 3 | 4 | 133 | 160 | 286 | 7.48e-26 | 107 |
| Msa0719570 | MtrunA17_Chr5g0410551 | 52.336 | 107 | 48 | 2 | 303 | 408 | 1 | 105 | 2.26e-25 | 101 |
| Msa0719570 | MtrunA17_Chr5g0439081 | 36.686 | 169 | 104 | 2 | 420 | 587 | 30 | 196 | 3.82e-25 | 103 |
| Msa0719570 | MtrunA17_Chr5g0410441 | 56.667 | 90 | 36 | 2 | 318 | 406 | 1 | 88 | 2.26e-23 | 95.1 |
| Msa0719570 | MtrunA17_Chr1g0211541 | 32.576 | 264 | 150 | 10 | 302 | 548 | 218 | 470 | 2.05e-22 | 101 |
| Msa0719570 | MtrunA17_Chr5g0410561 | 46.923 | 130 | 64 | 2 | 4 | 133 | 89 | 213 | 2.32e-20 | 90.1 |
| Msa0719570 | MtrunA17_Chr5g0439051 | 34.286 | 175 | 113 | 2 | 420 | 593 | 34 | 207 | 1.42e-19 | 87.8 |
| Msa0719570 | MtrunA17_Chr1g0211511 | 28.889 | 225 | 150 | 5 | 294 | 515 | 8 | 225 | 3.69e-19 | 89.0 |
| Msa0719570 | MtrunA17_Chr3g0100921 | 42.276 | 123 | 70 | 1 | 455 | 576 | 2 | 124 | 1.95e-18 | 82.4 |
| Msa0719570 | MtrunA17_Chr1g0211531 | 31.050 | 219 | 139 | 5 | 302 | 515 | 239 | 450 | 1.84e-17 | 85.9 |
| Msa0719570 | MtrunA17_Chr2g0297521 | 43.529 | 85 | 47 | 1 | 398 | 482 | 1 | 84 | 1.54e-14 | 69.3 |
| Msa0719570 | MtrunA17_Chr3g0098541 | 29.146 | 199 | 119 | 5 | 5 | 191 | 4 | 192 | 2.95e-14 | 74.7 |
| Msa0719570 | MtrunA17_Chr2g0297611 | 39.759 | 83 | 49 | 1 | 420 | 502 | 9 | 90 | 5.61e-13 | 65.1 |
| Msa0719570 | MtrunA17_Chr6g0455841 | 28.230 | 209 | 119 | 8 | 322 | 528 | 6 | 185 | 2.04e-12 | 66.2 |
| Msa0719570 | MtrunA17_Chr5g0439071 | 28.829 | 222 | 138 | 7 | 5 | 218 | 52 | 261 | 2.48e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719570 | AT3G18670.2 | 36.439 | 601 | 328 | 13 | 5 | 594 | 81 | 638 | 1.56e-122 | 376 |
| Msa0719570 | AT5G04700.1 | 34.812 | 586 | 325 | 13 | 15 | 594 | 121 | 655 | 5.16e-90 | 292 |
| Msa0719570 | AT5G04690.2 | 33.791 | 583 | 330 | 12 | 15 | 594 | 116 | 645 | 2.86e-88 | 287 |
| Msa0719570 | AT3G18670.1 | 43.452 | 336 | 183 | 5 | 262 | 594 | 252 | 583 | 3.30e-86 | 280 |
| Msa0719570 | AT3G18670.1 | 34.536 | 194 | 103 | 8 | 5 | 190 | 81 | 258 | 3.01e-23 | 104 |
| Msa0719570 | AT5G04690.3 | 33.390 | 584 | 317 | 14 | 15 | 594 | 116 | 631 | 2.48e-83 | 274 |
| Msa0719570 | AT5G04730.1 | 31.463 | 588 | 331 | 14 | 22 | 594 | 58 | 588 | 4.90e-79 | 261 |
| Msa0719570 | AT5G04680.1 | 32.020 | 609 | 348 | 14 | 15 | 594 | 108 | 679 | 4.62e-77 | 258 |
| Msa0719570 | AT5G04680.4 | 31.879 | 596 | 337 | 13 | 15 | 594 | 108 | 650 | 2.46e-76 | 256 |
| Msa0719570 | AT5G04680.2 | 31.882 | 574 | 324 | 12 | 35 | 594 | 7 | 527 | 1.70e-75 | 250 |
| Msa0719570 | AT5G04680.3 | 31.208 | 596 | 327 | 14 | 15 | 594 | 108 | 636 | 6.05e-71 | 241 |
| Msa0719570 | AT5G35810.1 | 38.816 | 304 | 175 | 5 | 303 | 598 | 35 | 335 | 4.43e-64 | 214 |
| Msa0719570 | AT5G04690.1 | 32.156 | 538 | 321 | 16 | 75 | 594 | 100 | 611 | 5.44e-64 | 222 |
| Msa0719570 | AT5G04690.1 | 32.515 | 163 | 97 | 3 | 15 | 175 | 116 | 267 | 1.07e-13 | 74.7 |
| Msa0719570 | AT3G54065.1 | 45.930 | 172 | 87 | 1 | 392 | 557 | 8 | 179 | 7.92e-45 | 159 |
| Msa0719570 | AT5G04700.2 | 28.861 | 395 | 228 | 10 | 15 | 406 | 121 | 465 | 9.88e-34 | 134 |
| Msa0719570 | AT4G03500.1 | 26.217 | 267 | 167 | 8 | 306 | 552 | 321 | 577 | 2.60e-11 | 67.0 |
| Msa0719570 | AT4G03500.2 | 26.217 | 267 | 167 | 8 | 306 | 552 | 298 | 554 | 2.60e-11 | 67.0 |
| Msa0719570 | AT4G03500.3 | 26.217 | 267 | 167 | 8 | 306 | 552 | 298 | 554 | 2.60e-11 | 67.0 |
Find 108 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTTGCTGGAAATTT+AGG | 0.060971 | 5_1:-14939289 | Msa0719570:CDS |
| TACCATACACTTTGCTATTT+TGG | 0.065585 | 5_1:+14942397 | None:intergenic |
| TCATATTCACATGTTATTTC+AGG | 0.196798 | 5_1:-14940118 | Msa0719570:CDS |
| TGTATCAATGCAGAAATATT+TGG | 0.218464 | 5_1:-14942188 | Msa0719570:intron |
| TACATCTTGCTGGAAATTTA+GGG | 0.275503 | 5_1:-14939288 | Msa0719570:CDS |
| TTCCCAAGTGGCAACAAATA+TGG | 0.279529 | 5_1:-14941958 | Msa0719570:CDS |
| CACTAGCTCCTTGTGGCTTT+CGG | 0.282604 | 5_1:+14938195 | None:intergenic |
| ACTTAAGTGGCAAAGACTTT+AGG | 0.288422 | 5_1:+14937918 | None:intergenic |
| ATACATGATGCAAGTGTAAA+TGG | 0.302746 | 5_1:-14939361 | Msa0719570:CDS |
| ATAAAATCTCTCTTTGCATT+TGG | 0.303142 | 5_1:+14939227 | None:intergenic |
| AAGCTAACCCCGACCTCTTA+TGG | 0.304029 | 5_1:-14939456 | Msa0719570:CDS |
| TCTTCTTTAGGAAGGATCTT+TGG | 0.321301 | 5_1:-14940330 | Msa0719570:intron |
| GTATTCTAAAGCACATTAAT+TGG | 0.329182 | 5_1:+14937584 | None:intergenic |
| TCTTGTTCCTAAAACTCATT+TGG | 0.331573 | 5_1:-14942261 | Msa0719570:CDS |
| TGTTGGTCTTCATAGATAAA+AGG | 0.345983 | 5_1:+14942342 | None:intergenic |
| AATAATCAGTAAGTTTCATT+TGG | 0.357146 | 5_1:+14937700 | None:intergenic |
| CGAAGAAATTGTGAAGAAAT+TGG | 0.359125 | 5_1:-14942507 | Msa0719570:CDS |
| CGAAAAGTGCAAAACTTATA+CGG | 0.363988 | 5_1:-14940972 | Msa0719570:CDS |
| AACTGGAATTTCACCATTGT+TGG | 0.367823 | 5_1:+14942325 | None:intergenic |
| ACTTCAATCCTACTCTTCAT+TGG | 0.375650 | 5_1:-14937974 | Msa0719570:CDS |
| ATTCCGCAAGTACATCTCTT+AGG | 0.378291 | 5_1:-14940285 | Msa0719570:intron |
| GAAGGTACTAGAACAATAAC+TGG | 0.383908 | 5_1:+14937767 | None:intergenic |
| TTCACTTGCTATGCTCTTGA+AGG | 0.385311 | 5_1:-14937834 | Msa0719570:CDS |
| AATACCCTCTTACATCTTGC+TGG | 0.391620 | 5_1:-14939298 | Msa0719570:CDS |
| AAAGTGTATGGTAGAAAAGA+AGG | 0.397258 | 5_1:-14942387 | Msa0719570:CDS |
| CATAGCAAGTGAAGCACAAA+AGG | 0.400124 | 5_1:+14937844 | None:intergenic |
| AGTTCTTCTTGCTGCAGCTA+AGG | 0.402235 | 5_1:-14942306 | Msa0719570:CDS |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 5_1:-14938094 | Msa0719570:CDS |
| TTAGTAATATTAAAGTTGTC+TGG | 0.412110 | 5_1:-14940093 | Msa0719570:intron |
| TTTGATCTTCACCGTAGATC+TGG | 0.414607 | 5_1:-14939259 | Msa0719570:CDS |
| TCAATAGACCATAAGAGGTC+GGG | 0.424370 | 5_1:+14939448 | None:intergenic |
| TTTCTCTGTGGTGTCCATGA+TGG | 0.430022 | 5_1:-14937870 | Msa0719570:CDS |
| GCTCTTGTTGCTGAGTTGAC+TGG | 0.432007 | 5_1:-14942425 | Msa0719570:CDS |
| TTAGCTGCAGCAAGAAGAAC+TGG | 0.432101 | 5_1:+14942308 | None:intergenic |
| CTGTCTTGATTGTTTCCACC+AGG | 0.436340 | 5_1:+14938076 | None:intergenic |
| TCTCTTTGCATTTGGAGAGC+AGG | 0.442521 | 5_1:+14939235 | None:intergenic |
| CATGCGTGCTAATGCGTACA+AGG | 0.443042 | 5_1:+14941990 | None:intergenic |
| GAAGAGTAGGATTGAAGTTG+AGG | 0.458968 | 5_1:+14937979 | None:intergenic |
| GGGAGGCCAGGTTATTGATC+AGG | 0.467530 | 5_1:-14942366 | Msa0719570:CDS |
| AATCCATATTTGTTGCCACT+TGG | 0.469531 | 5_1:+14941955 | None:intergenic |
| CTTCATGTTGCAGCGATAGC+TGG | 0.474395 | 5_1:-14942533 | Msa0719570:CDS |
| CACTTGCATCATGTATGAGT+TGG | 0.475670 | 5_1:+14939368 | None:intergenic |
| TCAACTCAGCAACAAGAGCT+AGG | 0.480624 | 5_1:+14942429 | None:intergenic |
| TATAAGTACTATCAACTAGT+TGG | 0.482551 | 5_1:-14937561 | Msa0719570:three_prime_UTR |
| CACCAAAATAGCAAAGTGTA+TGG | 0.486181 | 5_1:-14942399 | Msa0719570:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 5_1:-14942497 | Msa0719570:CDS |
| AATTTCCAGCAAGATGTAAG+AGG | 0.488916 | 5_1:+14939293 | None:intergenic |
| CTGACTTTGATTCTGATCTG+TGG | 0.491841 | 5_1:+14942031 | None:intergenic |
| ATCCATATTTGTTGCCACTT+GGG | 0.493011 | 5_1:+14941956 | None:intergenic |
| AATCGTGCACCCCAAGTGTA+AGG | 0.493640 | 5_1:-14938260 | Msa0719570:CDS |
| TAACGGCGCGTTATGCAGAA+AGG | 0.500456 | 5_1:-14937946 | Msa0719570:CDS |
| GTGGCAATTGTGGGAATCGT+TGG | 0.501784 | 5_1:+14942058 | None:intergenic |
| GGTAGAAAAGAAGGGAGGCC+AGG | 0.502333 | 5_1:-14942378 | Msa0719570:CDS |
| GATTCTGATCTGTGGGTAAG+TGG | 0.505508 | 5_1:+14942039 | None:intergenic |
| TGTAACAAATGCTGTTCTAC+CGG | 0.505604 | 5_1:-14940937 | Msa0719570:CDS |
| GTTCTTCTTGCTGCAGCTAA+GGG | 0.506106 | 5_1:-14942305 | Msa0719570:CDS |
| AACATGAAGAATACTCCTTC+CGG | 0.514614 | 5_1:+14942547 | None:intergenic |
| CTTTAGGAAGGATCTTTGGA+TGG | 0.516657 | 5_1:-14940326 | Msa0719570:intron |
| CACAAGGAGCTAGTGAAAGC+TGG | 0.525545 | 5_1:-14938187 | Msa0719570:CDS |
| AACGGCGCGTTATGCAGAAA+GGG | 0.526696 | 5_1:-14937945 | Msa0719570:CDS |
| TACTATCAACTAGTTGGATG+TGG | 0.529972 | 5_1:-14937555 | Msa0719570:three_prime_UTR |
| ATCAATAGACCATAAGAGGT+CGG | 0.531176 | 5_1:+14939447 | None:intergenic |
| AAGTGTATGGTAGAAAAGAA+GGG | 0.535226 | 5_1:-14942386 | Msa0719570:CDS |
| TGACTTTGATTCTGATCTGT+GGG | 0.537591 | 5_1:+14942032 | None:intergenic |
| AGAGCGAAAAGTAACTTAAG+TGG | 0.544621 | 5_1:+14937905 | None:intergenic |
| AAAGGTCCTGATCAATAACC+TGG | 0.552467 | 5_1:+14942360 | None:intergenic |
| CAGCTTTCACTAGCTCCTTG+TGG | 0.553008 | 5_1:+14938188 | None:intergenic |
| TTGCCACTTGGGAACACAGA+CGG | 0.560181 | 5_1:+14941967 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.563052 | 5_1:-14938160 | Msa0719570:CDS |
| TTAGAATTCCAATGAAGAGT+AGG | 0.566020 | 5_1:+14937966 | None:intergenic |
| CTGTGGGTAAGTGGCAATTG+TGG | 0.567316 | 5_1:+14942048 | None:intergenic |
| AGCACAAAAGGAAACCATCA+TGG | 0.568257 | 5_1:+14937856 | None:intergenic |
| TAAGGAATCTGAACTGAGAG+AGG | 0.568722 | 5_1:-14939548 | Msa0719570:CDS |
| TGTGGGTAAGTGGCAATTGT+GGG | 0.569318 | 5_1:+14942049 | None:intergenic |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 5_1:-14942496 | Msa0719570:CDS |
| ATGCTCTTGAAGGGACATGA+AGG | 0.576154 | 5_1:-14937824 | Msa0719570:CDS |
| CAATAGACCATAAGAGGTCG+GGG | 0.579829 | 5_1:+14939449 | None:intergenic |
| GGAGAGCAGGACCAGATCTA+CGG | 0.583724 | 5_1:+14939248 | None:intergenic |
| ACTCTTCATTGGAATTCTAA+CGG | 0.586393 | 5_1:-14937963 | Msa0719570:CDS |
| AGATCTACGGTGAAGATCAA+AGG | 0.590679 | 5_1:+14939261 | None:intergenic |
| TCACTTGCTATGCTCTTGAA+GGG | 0.593021 | 5_1:-14937833 | Msa0719570:CDS |
| CAACTCAGCAACAAGAGCTA+GGG | 0.594380 | 5_1:+14942430 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 5_1:-14938091 | Msa0719570:CDS |
| TTTCCACGTCTTCATCCGGA+AGG | 0.601903 | 5_1:-14942562 | Msa0719570:CDS |
| ATGTTGAAAGCAGCTAAGCA+TGG | 0.602004 | 5_1:-14939508 | Msa0719570:CDS |
| TTATCTATGAAGACCAACAA+TGG | 0.605556 | 5_1:-14942338 | Msa0719570:CDS |
| AATTGTGAAGAAATTGGTGA+AGG | 0.605805 | 5_1:-14942501 | Msa0719570:CDS |
| CAACTCAAAACATCTTCCAC+AGG | 0.607708 | 5_1:-14940909 | Msa0719570:intron |
| ATTTCCAGCAAGATGTAAGA+GGG | 0.615523 | 5_1:+14939294 | None:intergenic |
| ATGAAGAGTCGCAACTGTGA+AGG | 0.615755 | 5_1:+14937749 | None:intergenic |
| GAATCAAAGTCAGAATCAGA+TGG | 0.618803 | 5_1:-14942021 | Msa0719570:CDS |
| ATGCCGTCTGTGTTCCCAAG+TGG | 0.619107 | 5_1:-14941970 | Msa0719570:CDS |
| GTGAAAATGAAAGACAATCG+TGG | 0.626532 | 5_1:-14942461 | Msa0719570:CDS |
| GAACAGCATTTGTTACAATG+AGG | 0.629284 | 5_1:+14940943 | None:intergenic |
| ACTCCTTCCGGATGAAGACG+TGG | 0.630969 | 5_1:+14942559 | None:intergenic |
| TCTACGGTGAAGATCAAAGG+AGG | 0.647119 | 5_1:+14939264 | None:intergenic |
| GATATTTACCGAAAGCCACA+AGG | 0.651211 | 5_1:-14938203 | Msa0719570:CDS |
| CTTTCGGTAAATATCTCACG+AGG | 0.651762 | 5_1:+14938211 | None:intergenic |
| GAAAGCTGCAGCAAACATGA+TGG | 0.654889 | 5_1:+14938105 | None:intergenic |
| TGTCTTGATTGTTTCCACCA+GGG | 0.662086 | 5_1:+14938077 | None:intergenic |
| CTACCTAAGAGATGTACTTG+CGG | 0.662707 | 5_1:+14940282 | None:intergenic |
| GGTGGAAACAATCAAGACAG+TGG | 0.670462 | 5_1:-14938073 | Msa0719570:CDS |
| TATTATCAAATGCATCTACA+CGG | 0.671415 | 5_1:+14939317 | None:intergenic |
| ATGCGTGCTAATGCGTACAA+GGG | 0.686229 | 5_1:+14941991 | None:intergenic |
| CTACGGTGAAGATCAAAGGA+GGG | 0.699607 | 5_1:+14939265 | None:intergenic |
| GGAATTTGATTCAAGTACTG+TGG | 0.700162 | 5_1:-14937534 | Msa0719570:three_prime_UTR |
| GTACTGTGGTAAGAGAACTG+TGG | 0.734804 | 5_1:-14937520 | Msa0719570:three_prime_UTR |
| TGTATGGTAGAAAAGAAGGG+AGG | 0.739911 | 5_1:-14942383 | Msa0719570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTATTATGCATTTA+TGG | + | chr5_1:14938213-14938232 | None:intergenic | 10.0% |
| !! | ATTCAAATATATTATATTAG+GGG | - | chr5_1:14938716-14938735 | Msa0719570:intron | 10.0% |
| !!! | ATATATATATTTAAAGTTCA+TGG | - | chr5_1:14939035-14939054 | Msa0719570:intron | 10.0% |
| !! | ATAATGTTATAAATAGATAA+AGG | - | chr5_1:14939255-14939274 | Msa0719570:CDS | 10.0% |
| !! | TATAATAAAGTATATATGTT+TGG | + | chr5_1:14941712-14941731 | None:intergenic | 10.0% |
| !! | TAAAGTTATGTTAATGTTAA+TGG | - | chr5_1:14937933-14937952 | Msa0719570:CDS | 15.0% |
| !!! | TGTTAATGGATTTTTTTTTA+CGG | - | chr5_1:14937947-14937966 | Msa0719570:CDS | 15.0% |
| !!! | TTTTTTAAGTAATCAACAAA+TGG | + | chr5_1:14938249-14938268 | None:intergenic | 15.0% |
| !! | TACAAAAGTGATAAAATATA+GGG | + | chr5_1:14938901-14938920 | None:intergenic | 15.0% |
| !! | ATACAAAAGTGATAAAATAT+AGG | + | chr5_1:14938902-14938921 | None:intergenic | 15.0% |
| !!! | TTTTATCACTTTTGTATATT+TGG | - | chr5_1:14938905-14938924 | Msa0719570:intron | 15.0% |
| !! | ATATATTAAATATATCCAAC+CGG | + | chr5_1:14939019-14939038 | None:intergenic | 15.0% |
| !! | ATATATAGAAAATGAGAAAA+GGG | + | chr5_1:14939686-14939705 | None:intergenic | 15.0% |
| !! | TATATATAGAAAATGAGAAA+AGG | + | chr5_1:14939687-14939706 | None:intergenic | 15.0% |
| !!! | GAAAAAAATGTTTTCAATTT+CGG | + | chr5_1:14940012-14940031 | None:intergenic | 15.0% |
| !!! | CTTAAATTCTTGAATTTTTT+GGG | + | chr5_1:14940507-14940526 | None:intergenic | 15.0% |
| !! | TCTATTGATAAAAATAAAAG+AGG | - | chr5_1:14940638-14940657 | Msa0719570:intron | 15.0% |
| !!! | TTTTTTATTTTTTAGTTCAC+AGG | - | chr5_1:14941102-14941121 | Msa0719570:intron | 15.0% |
| !!! | TTTTTATTTTTTAGTTCACA+GGG | - | chr5_1:14941103-14941122 | Msa0719570:intron | 15.0% |
| !! | TATACTTTATTATAGCAAAA+TGG | - | chr5_1:14941718-14941737 | Msa0719570:intron | 15.0% |
| !!! | ACTAACTATATTTTATGAAA+TGG | - | chr5_1:14941767-14941786 | Msa0719570:intron | 15.0% |
| !! | TATATTTGAATAAACTCTGA+TGG | + | chr5_1:14938707-14938726 | None:intergenic | 20.0% |
| !!! | TTTTACTTGAAAATGATTCT+TGG | + | chr5_1:14939535-14939554 | None:intergenic | 20.0% |
| !! | TTAGTAATATTAAAGTTGTC+TGG | - | chr5_1:14939978-14939997 | Msa0719570:intron | 20.0% |
| !!! | TTTTTCCTTTATTTCTTATG+AGG | - | chr5_1:14940026-14940045 | Msa0719570:intron | 20.0% |
| !! | AATAACCTCATAAGAAATAA+AGG | + | chr5_1:14940034-14940053 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTATGAGGTTAT+TGG | - | chr5_1:14940033-14940052 | Msa0719570:intron | 20.0% |
| !! | TACAAAATACTTGATATGTT+GGG | + | chr5_1:14940289-14940308 | None:intergenic | 20.0% |
| !!! | TATCATTTAAGTTGTACTAA+CGG | - | chr5_1:14940315-14940334 | Msa0719570:CDS | 20.0% |
| !!! | AAACTAGTCTATATTTACTT+TGG | - | chr5_1:14940342-14940361 | Msa0719570:intron | 20.0% |
| !!! | CCTTAAATTCTTGAATTTTT+TGG | + | chr5_1:14940508-14940527 | None:intergenic | 20.0% |
| !! | CCAAAAAATTCAAGAATTTA+AGG | - | chr5_1:14940505-14940524 | Msa0719570:intron | 20.0% |
| !!! | AAGTTTGAAACTCTAAAATA+AGG | + | chr5_1:14940998-14941017 | None:intergenic | 20.0% |
| !! | GTTCAAAATGCAAAATAAAT+AGG | - | chr5_1:14941068-14941087 | Msa0719570:intron | 20.0% |
| !!! | TTTTATTTTTTAGTTCACAG+GGG | - | chr5_1:14941104-14941123 | Msa0719570:intron | 20.0% |
| !!! | GTGTCTTTTTTTTATTACAA+CGG | - | chr5_1:14941254-14941273 | Msa0719570:intron | 20.0% |
| !! | TTAAAGAAATAAGGTGAAAA+AGG | + | chr5_1:14941466-14941485 | None:intergenic | 20.0% |
| !!! | AAGTTATAACCTATTTTCAT+AGG | + | chr5_1:14941503-14941522 | None:intergenic | 20.0% |
| !! | AATAATCAGTAAGTTTCATT+TGG | + | chr5_1:14942374-14942393 | None:intergenic | 20.0% |
| !! | AATTCTTCCAAATGAGTTTT+AGG | + | chr5_1:14937820-14937839 | None:intergenic | 25.0% |
| ! | TGTATCAATGCAGAAATATT+TGG | - | chr5_1:14937883-14937902 | Msa0719570:CDS | 25.0% |
| ! | ATGCAGAAATATTTGGTAAA+TGG | - | chr5_1:14937890-14937909 | Msa0719570:CDS | 25.0% |
| ! | AGCATATAGAAAAGGATATT+AGG | + | chr5_1:14938397-14938416 | None:intergenic | 25.0% |
| ! | ACAACAAAGAGTTGTTTAAA+CGG | + | chr5_1:14938464-14938483 | None:intergenic | 25.0% |
| ! | CAATAACTATAACTACATTG+TGG | + | chr5_1:14938619-14938638 | None:intergenic | 25.0% |
| ! | TGTAGTTATAGTTATTGTCA+TGG | - | chr5_1:14938622-14938641 | Msa0719570:intron | 25.0% |
| ! | AAGAAAACACTGCTTTAATT+TGG | + | chr5_1:14938663-14938682 | None:intergenic | 25.0% |
| ! | ATTATATTAGGGGATTGATA+TGG | - | chr5_1:14938726-14938745 | Msa0719570:intron | 25.0% |
| !!! | TTGGTTGACTATTATTTTAG+AGG | - | chr5_1:14938924-14938943 | Msa0719570:intron | 25.0% |
| !!! | TGGTTGACTATTATTTTAGA+GGG | - | chr5_1:14938925-14938944 | Msa0719570:intron | 25.0% |
| ! | TCTCAAAACTGAAAACAAAA+TGG | + | chr5_1:14939076-14939095 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTATATACAATCG+AGG | + | chr5_1:14939382-14939401 | None:intergenic | 25.0% |
| ! | TTATTCTCTCTTTCTTCTTT+AGG | - | chr5_1:14939729-14939748 | Msa0719570:intron | 25.0% |
| !!! | ATTTTGATGACTTCTTTTTC+AGG | - | chr5_1:14939918-14939937 | Msa0719570:intron | 25.0% |
| !!! | TCATATTCACATGTTATTTC+AGG | - | chr5_1:14939953-14939972 | Msa0719570:intron | 25.0% |
| ! | ACAAAATACTTGATATGTTG+GGG | + | chr5_1:14940288-14940307 | None:intergenic | 25.0% |
| ! | CTACAAAATACTTGATATGT+TGG | + | chr5_1:14940290-14940309 | None:intergenic | 25.0% |
| !!! | ATCATTTAAGTTGTACTAAC+GGG | - | chr5_1:14940316-14940335 | Msa0719570:CDS | 25.0% |
| !! | TTTTATCAATAGACCATAAG+AGG | + | chr5_1:14940631-14940650 | None:intergenic | 25.0% |
| ! | TATTATCAAATGCATCTACA+CGG | + | chr5_1:14940757-14940776 | None:intergenic | 25.0% |
| ! | ATAAAATCTCTCTTTGCATT+TGG | + | chr5_1:14940847-14940866 | None:intergenic | 25.0% |
| !! | AAATGCAAAGAGAGATTTTA+TGG | - | chr5_1:14940846-14940865 | Msa0719570:intron | 25.0% |
| !! | AAGAGAGATTTTATGGTTTA+AGG | - | chr5_1:14940853-14940872 | Msa0719570:intron | 25.0% |
| ! | GGTGCAAAATTAATATCATA+AGG | - | chr5_1:14941046-14941065 | Msa0719570:intron | 25.0% |
| ! | CAAGATAAAATCAAGTCAAA+CGG | + | chr5_1:14941332-14941351 | None:intergenic | 25.0% |
| ! | CTAGTTTAACCTATGAAAAT+AGG | - | chr5_1:14941491-14941510 | Msa0719570:intron | 25.0% |
| !! | CTTCTTATCTTCTACATTTT+TGG | + | chr5_1:14941840-14941859 | None:intergenic | 25.0% |
| !!! | GTATTCTAAAGCACATTAAT+TGG | + | chr5_1:14942490-14942509 | None:intergenic | 25.0% |
| ! | TATAAGTACTATCAACTAGT+TGG | - | chr5_1:14942510-14942529 | Msa0719570:CDS | 25.0% |
| CGAAGAAATTGTGAAGAAAT+TGG | - | chr5_1:14937564-14937583 | Msa0719570:three_prime_UTR | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | - | chr5_1:14937570-14937589 | Msa0719570:three_prime_UTR | 30.0% | |
| !!! | TACCATACACTTTGCTATTT+TGG | + | chr5_1:14937677-14937696 | None:intergenic | 30.0% |
| AAAGTGTATGGTAGAAAAGA+AGG | - | chr5_1:14937684-14937703 | Msa0719570:three_prime_UTR | 30.0% | |
| AAGTGTATGGTAGAAAAGAA+GGG | - | chr5_1:14937685-14937704 | Msa0719570:three_prime_UTR | 30.0% | |
| !! | TGTTGGTCTTCATAGATAAA+AGG | + | chr5_1:14937732-14937751 | None:intergenic | 30.0% |
| TTATCTATGAAGACCAACAA+TGG | - | chr5_1:14937733-14937752 | Msa0719570:CDS | 30.0% | |
| TCTTGTTCCTAAAACTCATT+TGG | - | chr5_1:14937810-14937829 | Msa0719570:CDS | 30.0% | |
| ! | ACAGATGAAGATTTTCACAA+TGG | - | chr5_1:14937841-14937860 | Msa0719570:CDS | 30.0% |
| ATATGTTGTCATACTAGATG+TGG | - | chr5_1:14937977-14937996 | Msa0719570:CDS | 30.0% | |
| TAGAAAAGGATATTAGGTGT+GGG | + | chr5_1:14938391-14938410 | None:intergenic | 30.0% | |
| ATAGAAAAGGATATTAGGTG+TGG | + | chr5_1:14938392-14938411 | None:intergenic | 30.0% | |
| CAGTCATGATTAAAAAAGTG+TGG | + | chr5_1:14938430-14938449 | None:intergenic | 30.0% | |
| ACAACAAATGAAAACGTCAA+CGG | + | chr5_1:14938542-14938561 | None:intergenic | 30.0% | |
| ! | CGAAAAGTGCAAAACTTATA+CGG | - | chr5_1:14939099-14939118 | Msa0719570:intron | 30.0% |
| !!! | GATGTTTTGAGTTGTTTTTC+CGG | + | chr5_1:14939156-14939175 | None:intergenic | 30.0% |
| AGTGAGAAGAAAATCAAAAC+AGG | - | chr5_1:14939337-14939356 | Msa0719570:CDS | 30.0% | |
| TTCTTGCTCTTACTATGATT+GGG | + | chr5_1:14939496-14939515 | None:intergenic | 30.0% | |
| ! | TTTTCACATCCACAAATATG+AGG | - | chr5_1:14939815-14939834 | Msa0719570:intron | 30.0% |
| TTTCACATCCACAAATATGA+GGG | - | chr5_1:14939816-14939835 | Msa0719570:intron | 30.0% | |
| GTGATGTGTTGTCTTAATAA+TGG | - | chr5_1:14940108-14940127 | Msa0719570:CDS | 30.0% | |
| TGTTGTCTTAATAATGGCTA+TGG | - | chr5_1:14940114-14940133 | Msa0719570:CDS | 30.0% | |
| ! | TCGTATATTTCTTTTATCGC+TGG | + | chr5_1:14940437-14940456 | None:intergenic | 30.0% |
| ATACATGATGCAAGTGTAAA+TGG | - | chr5_1:14940710-14940729 | Msa0719570:intron | 30.0% | |
| TTACATCTTGCTGGAAATTT+AGG | - | chr5_1:14940782-14940801 | Msa0719570:intron | 30.0% | |
| TACATCTTGCTGGAAATTTA+GGG | - | chr5_1:14940783-14940802 | Msa0719570:intron | 30.0% | |
| TTTCACATGCACACAAAAAT+AGG | - | chr5_1:14940904-14940923 | Msa0719570:intron | 30.0% | |
| TTCACATGCACACAAAAATA+GGG | - | chr5_1:14940905-14940924 | Msa0719570:intron | 30.0% | |
| ! | AGTCTTATACGTGCTTTAAT+AGG | - | chr5_1:14940935-14940954 | Msa0719570:CDS | 30.0% |
| !!! | TTTTGAGTTCTTGAACTTCT+TGG | - | chr5_1:14941016-14941035 | Msa0719570:intron | 30.0% |
| ! | AAGGCTTGTGATATTTTCAT+TGG | + | chr5_1:14941447-14941466 | None:intergenic | 30.0% |
| CTAGAGAGCTTAAAGAAATA+AGG | + | chr5_1:14941475-14941494 | None:intergenic | 30.0% | |
| TAGGCACTTTGTATAAACTA+TGG | + | chr5_1:14941645-14941664 | None:intergenic | 30.0% | |
| AACCTAAGTGTGTATCATAT+AGG | + | chr5_1:14941664-14941683 | None:intergenic | 30.0% | |
| TTTATGAAATGGATGATTGC+AGG | - | chr5_1:14941778-14941797 | Msa0719570:intron | 30.0% | |
| ! | TGTTTTGTCCTTCAAGAAAA+GGG | + | chr5_1:14942029-14942048 | None:intergenic | 30.0% |
| ! | ATGTTTTGTCCTTCAAGAAA+AGG | + | chr5_1:14942030-14942049 | None:intergenic | 30.0% |
| TTAGAATTCCAATGAAGAGT+AGG | + | chr5_1:14942108-14942127 | None:intergenic | 30.0% | |
| ACTCTTCATTGGAATTCTAA+CGG | - | chr5_1:14942108-14942127 | Msa0719570:intron | 30.0% | |
| !!! | CATTATGCTTTTTTTCTCTG+TGG | - | chr5_1:14942189-14942208 | Msa0719570:CDS | 30.0% |
| !!! | GATTTTCAAGTCTACAGTAT+TGG | - | chr5_1:14942348-14942367 | Msa0719570:CDS | 30.0% |
| AACATGAAGAATACTCCTTC+CGG | + | chr5_1:14937527-14937546 | None:intergenic | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | - | chr5_1:14937575-14937594 | Msa0719570:three_prime_UTR | 35.0% | |
| GTGAAAATGAAAGACAATCG+TGG | - | chr5_1:14937610-14937629 | Msa0719570:three_prime_UTR | 35.0% | |
| CACCAAAATAGCAAAGTGTA+TGG | - | chr5_1:14937672-14937691 | Msa0719570:three_prime_UTR | 35.0% | |
| AACTGGAATTTCACCATTGT+TGG | + | chr5_1:14937749-14937768 | None:intergenic | 35.0% | |
| TGGTAAATGGTGACATATCT+TGG | - | chr5_1:14937903-14937922 | Msa0719570:CDS | 35.0% | |
| TGACTTTGATTCTGATCTGT+GGG | + | chr5_1:14938042-14938061 | None:intergenic | 35.0% | |
| GAATCAAAGTCAGAATCAGA+TGG | - | chr5_1:14938050-14938069 | Msa0719570:CDS | 35.0% | |
| ! | ATCCATATTTGTTGCCACTT+GGG | + | chr5_1:14938118-14938137 | None:intergenic | 35.0% |
| ! | AATCCATATTTGTTGCCACT+TGG | + | chr5_1:14938119-14938138 | None:intergenic | 35.0% |
| ACTGTTGCAGCATATAGAAA+AGG | + | chr5_1:14938405-14938424 | None:intergenic | 35.0% | |
| TTGGAAGACAACAAAGAAGA+CGG | + | chr5_1:14938499-14938518 | None:intergenic | 35.0% | |
| AACAAATGAAAACGTCAACG+GGG | + | chr5_1:14938540-14938559 | None:intergenic | 35.0% | |
| CAACAAATGAAAACGTCAAC+GGG | + | chr5_1:14938541-14938560 | None:intergenic | 35.0% | |
| TACATTGTGGTAGCAACTAA+TGG | + | chr5_1:14938606-14938625 | None:intergenic | 35.0% | |
| ! | TACTAAAGTGTTTCCTGAAC+CGG | - | chr5_1:14938997-14939016 | Msa0719570:intron | 35.0% |
| ! | TAAATATATCCAACCGGTTC+AGG | + | chr5_1:14939013-14939032 | None:intergenic | 35.0% |
| ! | GAACAGCATTTGTTACAATG+AGG | + | chr5_1:14939131-14939150 | None:intergenic | 35.0% |
| TGTAACAAATGCTGTTCTAC+CGG | - | chr5_1:14939134-14939153 | Msa0719570:intron | 35.0% | |
| ! | TTGATTTTCTTCTCACTCTC+CGG | + | chr5_1:14939334-14939353 | None:intergenic | 35.0% |
| TATACAATCGAGGTGTGTTT+GGG | + | chr5_1:14939372-14939391 | None:intergenic | 35.0% | |
| ATATACAATCGAGGTGTGTT+TGG | + | chr5_1:14939373-14939392 | None:intergenic | 35.0% | |
| GTTCTTGCTCTTACTATGAT+TGG | + | chr5_1:14939497-14939516 | None:intergenic | 35.0% | |
| ! | TGTTAAACCTTTGGTGGTTA+GGG | + | chr5_1:14939565-14939584 | None:intergenic | 35.0% |
| ATGTTGTTGTGTGGTCTATA+GGG | + | chr5_1:14939636-14939655 | None:intergenic | 35.0% | |
| ATGAGAAAAGGGTTAGACTA+GGG | + | chr5_1:14939675-14939694 | None:intergenic | 35.0% | |
| AATGAGAAAAGGGTTAGACT+AGG | + | chr5_1:14939676-14939695 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTCTTCTTTAGGA+AGG | - | chr5_1:14939733-14939752 | Msa0719570:intron | 35.0% |
| ! | TCTTCTTTAGGAAGGATCTT+TGG | - | chr5_1:14939741-14939760 | Msa0719570:intron | 35.0% |
| TGTATTCACCCTCATATTTG+TGG | + | chr5_1:14939827-14939846 | None:intergenic | 35.0% | |
| CTACTTCTCTACAACTTAGA+TGG | + | chr5_1:14940243-14940262 | None:intergenic | 35.0% | |
| CATCTAAGTTGTAGAGAAGT+AGG | - | chr5_1:14940241-14940260 | Msa0719570:intron | 35.0% | |
| TGTAGAGAAGTAGGAATTCA+CGG | - | chr5_1:14940250-14940269 | Msa0719570:intron | 35.0% | |
| TCATCATAGAATTGGAGAGA+GGG | + | chr5_1:14940414-14940433 | None:intergenic | 35.0% | |
| ATCAATAGACCATAAGAGGT+CGG | + | chr5_1:14940627-14940646 | None:intergenic | 35.0% | |
| ! | GTTGGAAGACTTCTTTTCTA+CGG | + | chr5_1:14940688-14940707 | None:intergenic | 35.0% |
| ATTTCCAGCAAGATGTAAGA+GGG | + | chr5_1:14940780-14940799 | None:intergenic | 35.0% | |
| AATTTCCAGCAAGATGTAAG+AGG | + | chr5_1:14940781-14940800 | None:intergenic | 35.0% | |
| CTTGAACTTCTTGGCTATAT+TGG | - | chr5_1:14941025-14941044 | Msa0719570:intron | 35.0% | |
| TGCCTATATGATACACACTT+AGG | - | chr5_1:14941659-14941678 | Msa0719570:intron | 35.0% | |
| !!! | TTTTTGGCTTCCTTACACTT+GGG | + | chr5_1:14941824-14941843 | None:intergenic | 35.0% |
| !!! | ATTTTTGGCTTCCTTACACT+TGG | + | chr5_1:14941825-14941844 | None:intergenic | 35.0% |
| TAGTGAAAGCTGGAGAAAAA+TGG | - | chr5_1:14941894-14941913 | Msa0719570:intron | 35.0% | |
| AGTGAAAGCTGGAGAAAAAT+GGG | - | chr5_1:14941895-14941914 | Msa0719570:intron | 35.0% | |
| ! | GTTTTGTCCTTCAAGAAAAG+GGG | + | chr5_1:14942028-14942047 | None:intergenic | 35.0% |
| ACTTCAATCCTACTCTTCAT+TGG | - | chr5_1:14942097-14942116 | Msa0719570:intron | 35.0% | |
| ACTTAAGTGGCAAAGACTTT+AGG | + | chr5_1:14942156-14942175 | None:intergenic | 35.0% | |
| AGAGCGAAAAGTAACTTAAG+TGG | + | chr5_1:14942169-14942188 | None:intergenic | 35.0% | |
| !! | GAAGGTACTAGAACAATAAC+TGG | + | chr5_1:14942307-14942326 | None:intergenic | 35.0% |
| TACTATCAACTAGTTGGATG+TGG | - | chr5_1:14942516-14942535 | Msa0719570:CDS | 35.0% | |
| ! | GGAATTTGATTCAAGTACTG+TGG | - | chr5_1:14942537-14942556 | Msa0719570:CDS | 35.0% |
| ! | ATGTTTTCCACGTCTTCATC+CGG | - | chr5_1:14937505-14937524 | Msa0719570:three_prime_UTR | 40.0% |
| GTGAAGAAATTGGTGAAGGA+AGG | - | chr5_1:14937574-14937593 | Msa0719570:three_prime_UTR | 40.0% | |
| TGTATGGTAGAAAAGAAGGG+AGG | - | chr5_1:14937688-14937707 | Msa0719570:three_prime_UTR | 40.0% | |
| AAAGGTCCTGATCAATAACC+TGG | + | chr5_1:14937714-14937733 | None:intergenic | 40.0% | |
| CTGACTTTGATTCTGATCTG+TGG | + | chr5_1:14938043-14938062 | None:intergenic | 40.0% | |
| TTCCCAAGTGGCAACAAATA+TGG | - | chr5_1:14938113-14938132 | Msa0719570:CDS | 40.0% | |
| TGTTGCCAATTATGTCCTTG+CGG | - | chr5_1:14938292-14938311 | Msa0719570:intron | 40.0% | |
| TTGTTTAAACGGTGAGTGCA+TGG | + | chr5_1:14938453-14938472 | None:intergenic | 40.0% | |
| GATGATGAACGCAACTACAT+TGG | + | chr5_1:14938518-14938537 | None:intergenic | 40.0% | |
| ATTGTGGTAGCAACTAATGG+TGG | + | chr5_1:14938603-14938622 | None:intergenic | 40.0% | |
| CGCAAGAGATATGTATATGC+TGG | - | chr5_1:14938773-14938792 | Msa0719570:intron | 40.0% | |
| CAACTCAAAACATCTTCCAC+AGG | - | chr5_1:14939162-14939181 | Msa0719570:intron | 40.0% | |
| CAAAACATCTTCCACAGGTA+CGG | - | chr5_1:14939167-14939186 | Msa0719570:intron | 40.0% | |
| ! | TCTCGCTCTCTTCAGATTTT+TGG | + | chr5_1:14939397-14939416 | None:intergenic | 40.0% |
| ! | CTGTTAAACCTTTGGTGGTT+AGG | + | chr5_1:14939566-14939585 | None:intergenic | 40.0% |
| CTAACCACCAAAGGTTTAAC+AGG | - | chr5_1:14939564-14939583 | Msa0719570:CDS | 40.0% | |
| CATGTTGTTGTGTGGTCTAT+AGG | + | chr5_1:14939637-14939656 | None:intergenic | 40.0% | |
| TAGTTTGGCATGTTGTTGTG+TGG | + | chr5_1:14939645-14939664 | None:intergenic | 40.0% | |
| CAACAACATGCCAAACTAAG+AGG | - | chr5_1:14939647-14939666 | Msa0719570:intron | 40.0% | |
| ! | CTTTAGGAAGGATCTTTGGA+TGG | - | chr5_1:14939745-14939764 | Msa0719570:intron | 40.0% |
| ATTCCGCAAGTACATCTCTT+AGG | - | chr5_1:14939786-14939805 | Msa0719570:intron | 40.0% | |
| CTACCTAAGAGATGTACTTG+CGG | + | chr5_1:14939792-14939811 | None:intergenic | 40.0% | |
| ! | AATACACACTGTGTTGCTCT+TGG | - | chr5_1:14939841-14939860 | Msa0719570:intron | 40.0% |
| GTAGAGAAGTAGGAATTCAC+GGG | - | chr5_1:14940251-14940270 | Msa0719570:intron | 40.0% | |
| !! | GGAATTCACGGGTTTTAATC+CGG | - | chr5_1:14940262-14940281 | Msa0719570:intron | 40.0% |
| AATACTTGATATGTTGGGGC+CGG | + | chr5_1:14940284-14940303 | None:intergenic | 40.0% | |
| GTCATCATAGAATTGGAGAG+AGG | + | chr5_1:14940415-14940434 | None:intergenic | 40.0% | |
| ATCGCTGGTCATCATAGAAT+TGG | + | chr5_1:14940422-14940441 | None:intergenic | 40.0% | |
| TAAGGAATCTGAACTGAGAG+AGG | - | chr5_1:14940523-14940542 | Msa0719570:intron | 40.0% | |
| ATGTTGAAAGCAGCTAAGCA+TGG | - | chr5_1:14940563-14940582 | Msa0719570:intron | 40.0% | |
| TCAATAGACCATAAGAGGTC+GGG | + | chr5_1:14940626-14940645 | None:intergenic | 40.0% | |
| CACTTGCATCATGTATGAGT+TGG | + | chr5_1:14940706-14940725 | None:intergenic | 40.0% | |
| AATACCCTCTTACATCTTGC+TGG | - | chr5_1:14940773-14940792 | Msa0719570:intron | 40.0% | |
| AGATCTACGGTGAAGATCAA+AGG | + | chr5_1:14940813-14940832 | None:intergenic | 40.0% | |
| TTTGATCTTCACCGTAGATC+TGG | - | chr5_1:14940812-14940831 | Msa0719570:intron | 40.0% | |
| TATAGAAGATCTGCTTGCAG+TGG | - | chr5_1:14940961-14940980 | Msa0719570:CDS | 40.0% | |
| GTCAGCTAAACCTACTCAAA+TGG | - | chr5_1:14941126-14941145 | Msa0719570:intron | 40.0% | |
| AGGATCTTGTCCATTTGAGT+AGG | + | chr5_1:14941139-14941158 | None:intergenic | 40.0% | |
| ! | GCAAAATGGATTTCAGTAGC+TGG | - | chr5_1:14941732-14941751 | Msa0719570:intron | 40.0% |
| AAATGGATGATTGCAGGAAG+TGG | - | chr5_1:14941784-14941803 | Msa0719570:intron | 40.0% | |
| !!! | TTTTGGCTTCCTTACACTTG+GGG | + | chr5_1:14941823-14941842 | None:intergenic | 40.0% |
| CTTTCGGTAAATATCTCACG+AGG | + | chr5_1:14941863-14941882 | None:intergenic | 40.0% | |
| GATATTTACCGAAAGCCACA+AGG | - | chr5_1:14941868-14941887 | Msa0719570:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | - | chr5_1:14941911-14941930 | Msa0719570:intron | 40.0% | |
| ! | TGGAATTCCCCTTTTCTTGA+AGG | - | chr5_1:14942018-14942037 | Msa0719570:CDS | 40.0% |
| GAAGAGTAGGATTGAAGTTG+AGG | + | chr5_1:14942095-14942114 | None:intergenic | 40.0% | |
| AGCACAAAAGGAAACCATCA+TGG | + | chr5_1:14942218-14942237 | None:intergenic | 40.0% | |
| CATAGCAAGTGAAGCACAAA+AGG | + | chr5_1:14942230-14942249 | None:intergenic | 40.0% | |
| !! | TTCACTTGCTATGCTCTTGA+AGG | - | chr5_1:14942237-14942256 | Msa0719570:CDS | 40.0% |
| !! | TCACTTGCTATGCTCTTGAA+GGG | - | chr5_1:14942238-14942257 | Msa0719570:CDS | 40.0% |
| CAACTCAGCAACAAGAGCTA+GGG | + | chr5_1:14937644-14937663 | None:intergenic | 45.0% | |
| TCAACTCAGCAACAAGAGCT+AGG | + | chr5_1:14937645-14937664 | None:intergenic | 45.0% | |
| TTAGCTGCAGCAAGAAGAAC+TGG | + | chr5_1:14937766-14937785 | None:intergenic | 45.0% | |
| AGTTCTTCTTGCTGCAGCTA+AGG | - | chr5_1:14937765-14937784 | Msa0719570:CDS | 45.0% | |
| GTTCTTCTTGCTGCAGCTAA+GGG | - | chr5_1:14937766-14937785 | Msa0719570:CDS | 45.0% | |
| TGTGGGTAAGTGGCAATTGT+GGG | + | chr5_1:14938025-14938044 | None:intergenic | 45.0% | |
| GATTCTGATCTGTGGGTAAG+TGG | + | chr5_1:14938035-14938054 | None:intergenic | 45.0% | |
| ATGCGTGCTAATGCGTACAA+GGG | + | chr5_1:14938083-14938102 | None:intergenic | 45.0% | |
| GACAACAAAGAAGACGGTGA+CGG | + | chr5_1:14938493-14938512 | None:intergenic | 45.0% | |
| ! | AAAGTGTTTCCTGAACCGGT+TGG | - | chr5_1:14939001-14939020 | Msa0719570:intron | 45.0% |
| ACAACACCATCAAGACCGAT+AGG | - | chr5_1:14939290-14939309 | Msa0719570:CDS | 45.0% | |
| AGTAAGAGCAAGAACTCGCA+TGG | - | chr5_1:14939502-14939521 | Msa0719570:CDS | 45.0% | |
| AACTTCTCCCTAACCACCAA+AGG | - | chr5_1:14939555-14939574 | Msa0719570:CDS | 45.0% | |
| TGACGCTCCTGTTAAACCTT+TGG | + | chr5_1:14939574-14939593 | None:intergenic | 45.0% | |
| TGTGGTCTATAGGGATCTCT+CGG | + | chr5_1:14939627-14939646 | None:intergenic | 45.0% | |
| CGCAAGTACATCTCTTAGGT+AGG | - | chr5_1:14939790-14939809 | Msa0719570:intron | 45.0% | |
| !! | TGAAACTTGCTAGCATGAGC+GGG | + | chr5_1:14940194-14940213 | None:intergenic | 45.0% |
| !! | CTGAAACTTGCTAGCATGAG+CGG | + | chr5_1:14940195-14940214 | None:intergenic | 45.0% |
| CAATAGACCATAAGAGGTCG+GGG | + | chr5_1:14940625-14940644 | None:intergenic | 45.0% | |
| CTACGGTGAAGATCAAAGGA+GGG | + | chr5_1:14940809-14940828 | None:intergenic | 45.0% | |
| TCTACGGTGAAGATCAAAGG+AGG | + | chr5_1:14940810-14940829 | None:intergenic | 45.0% | |
| TCTCTTTGCATTTGGAGAGC+AGG | + | chr5_1:14940839-14940858 | None:intergenic | 45.0% | |
| AAATGGACAAGATCCTCCCT+TGG | - | chr5_1:14941143-14941162 | Msa0719570:intron | 45.0% | |
| AAGTCAATACCAGCAGCCAA+GGG | + | chr5_1:14941162-14941181 | None:intergenic | 45.0% | |
| GAAAGCTGCAGCAAACATGA+TGG | + | chr5_1:14941969-14941988 | None:intergenic | 45.0% | |
| TTTCTCTGTGGTGTCCATGA+TGG | - | chr5_1:14942201-14942220 | Msa0719570:CDS | 45.0% | |
| ATGCTCTTGAAGGGACATGA+AGG | - | chr5_1:14942247-14942266 | Msa0719570:CDS | 45.0% | |
| ATGAAGAGTCGCAACTGTGA+AGG | + | chr5_1:14942325-14942344 | None:intergenic | 45.0% | |
| GTACTGTGGTAAGAGAACTG+TGG | - | chr5_1:14942551-14942570 | Msa0719570:CDS | 45.0% | |
| !!! | GTTTTTTTTTTTTTTATTAT+CGG | - | chr5_1:14938173-14938192 | Msa0719570:CDS | 5.0% |
| !! | TTATTCAAATATATTATATT+AGG | - | chr5_1:14938714-14938733 | Msa0719570:intron | 5.0% |
| !! | TATTCAAATATATTATATTA+GGG | - | chr5_1:14938715-14938734 | Msa0719570:intron | 5.0% |
| TTTCCACGTCTTCATCCGGA+AGG | - | chr5_1:14937509-14937528 | Msa0719570:three_prime_UTR | 50.0% | |
| CTTCATGTTGCAGCGATAGC+TGG | - | chr5_1:14937538-14937557 | Msa0719570:three_prime_UTR | 50.0% | |
| ! | GCTCTTGTTGCTGAGTTGAC+TGG | - | chr5_1:14937646-14937665 | Msa0719570:three_prime_UTR | 50.0% |
| GTGGCAATTGTGGGAATCGT+TGG | + | chr5_1:14938016-14938035 | None:intergenic | 50.0% | |
| CTGTGGGTAAGTGGCAATTG+TGG | + | chr5_1:14938026-14938045 | None:intergenic | 50.0% | |
| CATGCGTGCTAATGCGTACA+AGG | + | chr5_1:14938084-14938103 | None:intergenic | 50.0% | |
| ! | TTGCCACTTGGGAACACAGA+CGG | + | chr5_1:14938107-14938126 | None:intergenic | 50.0% |
| CCAAACGCATGACTCTTGCA+CGG | - | chr5_1:14938347-14938366 | Msa0719570:intron | 50.0% | |
| TTGAGCTGCGACAATGGCAA+AGG | + | chr5_1:14938579-14938598 | None:intergenic | 50.0% | |
| AGTTGTGCAATCCGTACCTG+TGG | + | chr5_1:14939181-14939200 | None:intergenic | 50.0% | |
| GAATGTCTGCCAGGACCTAT+CGG | + | chr5_1:14939308-14939327 | None:intergenic | 50.0% | |
| GTGAGAGAGAGACTCACCAT+AGG | - | chr5_1:14939419-14939438 | Msa0719570:CDS | 50.0% | |
| GTGGTCTGTGGTAGTACCTA+TGG | + | chr5_1:14939438-14939457 | None:intergenic | 50.0% | |
| AACATGCATGTCGTGGTCTG+TGG | + | chr5_1:14939450-14939469 | None:intergenic | 50.0% | |
| TGCATGTTCCAGCACATGAG+AGG | - | chr5_1:14939462-14939481 | Msa0719570:CDS | 50.0% | |
| CGCTCCTGTTAAACCTTTGG+TGG | + | chr5_1:14939571-14939590 | None:intergenic | 50.0% | |
| GACTAGGGCTCCTCTTAGTT+TGG | + | chr5_1:14939660-14939679 | None:intergenic | 50.0% | |
| AAGCTAACCCCGACCTCTTA+TGG | - | chr5_1:14940615-14940634 | Msa0719570:intron | 50.0% | |
| CAAGTCAATACCAGCAGCCA+AGG | + | chr5_1:14941163-14941182 | None:intergenic | 50.0% | |
| AATCGTGCACCCCAAGTGTA+AGG | - | chr5_1:14941811-14941830 | Msa0719570:intron | 50.0% | |
| CACTAGCTCCTTGTGGCTTT+CGG | + | chr5_1:14941879-14941898 | None:intergenic | 50.0% | |
| CAGCTTTCACTAGCTCCTTG+TGG | + | chr5_1:14941886-14941905 | None:intergenic | 50.0% | |
| CACAAGGAGCTAGTGAAAGC+TGG | - | chr5_1:14941884-14941903 | Msa0719570:intron | 50.0% | |
| TAACGGCGCGTTATGCAGAA+AGG | - | chr5_1:14942125-14942144 | Msa0719570:intron | 50.0% | |
| AACGGCGCGTTATGCAGAAA+GGG | - | chr5_1:14942126-14942145 | Msa0719570:intron | 50.0% | |
| ACTCCTTCCGGATGAAGACG+TGG | + | chr5_1:14937515-14937534 | None:intergenic | 55.0% | |
| GGTAGAAAAGAAGGGAGGCC+AGG | - | chr5_1:14937693-14937712 | Msa0719570:three_prime_UTR | 55.0% | |
| GGGAGGCCAGGTTATTGATC+AGG | - | chr5_1:14937705-14937724 | Msa0719570:exon | 55.0% | |
| ATGCCGTCTGTGTTCCCAAG+TGG | - | chr5_1:14938101-14938120 | Msa0719570:CDS | 55.0% | |
| CGCGACCGCAAGGACATAAT+TGG | + | chr5_1:14938300-14938319 | None:intergenic | 55.0% | |
| CGCGAGCACGTAGTGCTAAA+TGG | - | chr5_1:14938316-14938335 | Msa0719570:intron | 55.0% | |
| CCGTGCAAGAGTCATGCGTT+TGG | + | chr5_1:14938350-14938369 | None:intergenic | 55.0% | |
| GGTGGTTTGAGCTGCGACAA+TGG | + | chr5_1:14938585-14938604 | None:intergenic | 55.0% | |
| CCAGGACCTATCGGTCTTGA+TGG | + | chr5_1:14939299-14939318 | None:intergenic | 55.0% | |
| CCATCAAGACCGATAGGTCC+TGG | - | chr5_1:14939296-14939315 | Msa0719570:CDS | 55.0% | |
| GTCCTGGCAGACATTCAGAC+CGG | - | chr5_1:14939312-14939331 | Msa0719570:CDS | 55.0% | |
| GTGCTGGAACATGCATGTCG+TGG | + | chr5_1:14939457-14939476 | None:intergenic | 55.0% | |
| ATGTGCAGCCTCTCATGTGC+TGG | + | chr5_1:14939473-14939492 | None:intergenic | 55.0% | |
| AATGGCTATGGTGCGTGACC+TGG | - | chr5_1:14940126-14940145 | Msa0719570:CDS | 55.0% | |
| ACACAACATGCGCGATGACC+AGG | + | chr5_1:14940147-14940166 | None:intergenic | 55.0% | |
| GGAGAGCAGGACCAGATCTA+CGG | + | chr5_1:14940826-14940845 | None:intergenic | 55.0% | |
| TCAATACCAGCAGCCAAGGG+AGG | + | chr5_1:14941159-14941178 | None:intergenic | 55.0% | |
| CTCCGGTCTGAATGTCTGCC+AGG | + | chr5_1:14939317-14939336 | None:intergenic | 60.0% | |
| CAAGATCCTCCCTTGGCTGC+TGG | - | chr5_1:14941150-14941169 | Msa0719570:intron | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | - | chr5_1:14941977-14941996 | Msa0719570:CDS | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | - | chr5_1:14941980-14941999 | Msa0719570:CDS | 60.0% | |
| ACTACGTGCTCGCGACCGCA+AGG | + | chr5_1:14938310-14938329 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 14937505 | 14942588 | 14937505 | ID=Msa0719570;Name=Msa0719570 |
| chr5_1 | mRNA | 14937505 | 14942588 | 14937505 | ID=Msa0719570-mRNA-1;Parent=Msa0719570;Name=Msa0719570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.85|1|0.66|0.85|7|210|598 |
| chr5_1 | exon | 14937505 | 14938293 | 14937505 | ID=Msa0719570-mRNA-1:exon:5800;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14939219 | 14939655 | 14939219 | ID=Msa0719570-mRNA-1:exon:5799;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14940094 | 14940153 | 14940094 | ID=Msa0719570-mRNA-1:exon:5798;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14940286 | 14940342 | 14940286 | ID=Msa0719570-mRNA-1:exon:5797;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14940910 | 14941005 | 14940910 | ID=Msa0719570-mRNA-1:exon:5796;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14941932 | 14942099 | 14941932 | ID=Msa0719570-mRNA-1:exon:5795;Parent=Msa0719570-mRNA-1 |
| chr5_1 | exon | 14942189 | 14942588 | 14942189 | ID=Msa0719570-mRNA-1:exon:5794;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14942189 | 14942588 | 14942189 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14941932 | 14942099 | 14941932 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14940910 | 14941005 | 14940910 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14940286 | 14940342 | 14940286 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14940094 | 14940153 | 14940094 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14939219 | 14939655 | 14939219 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | CDS | 14937715 | 14938293 | 14937715 | ID=Msa0719570-mRNA-1:cds;Parent=Msa0719570-mRNA-1 |
| chr5_1 | three_prime_UTR | 14937505 | 14937714 | 14937505 | ID=Msa0719570-mRNA-1:three_prime_utr;Parent=Msa0719570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
