AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719670 MtrunA17_Chr5g0410461 93.931 346 3 1 313 640 127 472 0.0 662
Msa0719670 MtrunA17_Chr5g0410171 45.640 734 259 15 1 630 34 731 0.0 554
Msa0719670 MtrunA17_Chr5g0410341 45.417 720 295 15 1 630 32 743 0.0 538
Msa0719670 MtrunA17_Chr5g0410371 74.587 303 58 2 354 638 1 302 1.93e-153 444
Msa0719670 MtrunA17_Chr5g0410471 91.121 214 11 1 3 208 105 318 2.11e-133 394
Msa0719670 MtrunA17_Chr5g0410201 59.271 329 109 4 322 630 2 325 3.73e-129 383
Msa0719670 MtrunA17_Chr5g0410271 58.232 328 112 4 323 630 2 324 2.37e-126 376
Msa0719670 MtrunA17_Chr6g0457101 39.207 681 296 18 20 629 51 684 5.35e-125 385
Msa0719670 MtrunA17_Chr6g0456101 40.501 679 322 22 20 626 66 734 7.63e-122 379
Msa0719670 MtrunA17_Chr5g0410581 53.644 343 138 4 314 636 459 800 7.82e-112 354
Msa0719670 MtrunA17_Chr5g0410581 45.955 309 130 10 4 298 77 362 7.42e-60 214
Msa0719670 MtrunA17_Chr6g0456141 48.925 372 158 8 280 626 13 377 2.95e-107 329
Msa0719670 MtrunA17_Chr5g0410381 66.255 243 68 3 77 311 6 242 4.87e-97 298
Msa0719670 MtrunA17_Chr5g0410191 58.763 194 75 2 437 630 2 190 1.26e-74 237
Msa0719670 MtrunA17_Chr5g0410451 57.561 205 85 2 435 638 39 242 4.80e-74 238
Msa0719670 MtrunA17_Chr5g0410411 55.462 238 90 5 4 230 73 305 4.47e-73 238
Msa0719670 MtrunA17_Chr5g0410541 55.556 216 88 4 422 636 13 221 7.46e-69 223
Msa0719670 MtrunA17_Chr2g0297701 32.710 535 299 13 114 631 80 570 5.44e-66 227
Msa0719670 MtrunA17_Chr5g0443001 29.791 574 308 12 117 633 69 604 4.48e-60 211
Msa0719670 MtrunA17_Chr2g0297691 30.798 539 309 13 115 631 196 692 4.87e-59 210
Msa0719670 MtrunA17_Chr2g0297681 30.571 543 305 14 115 631 194 690 4.07e-58 208
Msa0719670 MtrunA17_Chr5g0410561 50.917 218 91 6 24 230 1 213 4.74e-58 194
Msa0719670 MtrunA17_Chr2g0297491 41.111 270 153 4 363 631 114 378 7.30e-56 194
Msa0719670 MtrunA17_Chr2g0297651 30.297 538 312 14 115 631 196 691 4.28e-53 194
Msa0719670 MtrunA17_Chr3g0100741 27.462 528 333 11 117 613 71 579 1.13e-51 188
Msa0719670 MtrunA17_Chr2g0297481 30.871 528 276 18 138 632 4 475 1.55e-50 182
Msa0719670 MtrunA17_Chr3g0100301 30.162 431 218 10 192 615 40 394 2.99e-50 180
Msa0719670 MtrunA17_Chr5g0410511 46.078 204 108 2 437 639 2 204 8.25e-50 172
Msa0719670 MtrunA17_Chr2g0297711 37.037 270 163 3 364 631 263 527 1.95e-47 175
Msa0719670 MtrunA17_Chr3g0096941 27.011 522 342 11 117 612 71 579 9.14e-45 169
Msa0719670 MtrunA17_Chr2g0286601 34.296 277 169 3 354 626 408 675 9.10e-43 164
Msa0719670 MtrunA17_Chr5g0410211 45.205 219 84 6 103 311 5 197 1.05e-42 152
Msa0719670 MtrunA17_Chr5g0410181 56.618 136 54 2 495 630 1 131 4.08e-42 148
Msa0719670 MtrunA17_Chr5g0410291 44.749 219 80 7 103 311 5 192 4.85e-40 145
Msa0719670 MtrunA17_Chr2g0286551 35.740 277 163 5 366 637 400 666 9.64e-38 149
Msa0719670 MtrunA17_Chr3g0098481 32.500 240 157 3 395 632 97 333 3.60e-36 139
Msa0719670 MtrunA17_Chr2g0284501 37.452 259 141 6 367 614 400 648 8.27e-35 140
Msa0719670 MtrunA17_Chr5g0410501 46.479 142 57 2 314 436 147 288 2.41e-32 127
Msa0719670 MtrunA17_Chr3g0102001 37.500 232 137 3 399 629 510 734 1.78e-31 130
Msa0719670 MtrunA17_Chr2g0286561 34.031 191 122 1 436 626 14 200 3.97e-31 121
Msa0719670 MtrunA17_Chr2g0284541 39.189 222 125 4 367 586 384 597 2.95e-29 123
Msa0719670 MtrunA17_Chr3g0098301 29.210 291 177 8 353 619 101 386 5.04e-29 119
Msa0719670 MtrunA17_Chr5g0410441 56.522 92 36 2 365 452 15 106 7.74e-28 108
Msa0719670 MtrunA17_Chr5g0439061 32.895 228 148 2 399 626 504 726 1.62e-27 118
Msa0719670 MtrunA17_Chr3g0098531 27.801 241 170 3 393 632 48 285 7.10e-27 111
Msa0719670 MtrunA17_Chr5g0439081 31.604 212 133 4 433 639 8 212 3.36e-25 103
Msa0719670 MtrunA17_Chr5g0410551 46.667 105 37 2 354 439 1 105 4.69e-22 92.0
Msa0719670 MtrunA17_Chr5g0439051 34.211 190 119 3 441 629 23 207 1.29e-21 94.0
Msa0719670 MtrunA17_Chr1g0211541 28.455 246 154 4 352 577 217 460 5.31e-20 94.0
Msa0719670 MtrunA17_Chr6g0456151 33.043 230 126 8 20 230 66 286 1.24e-19 89.7
Msa0719670 MtrunA17_Chr1g0211531 28.090 267 164 7 345 586 231 494 2.38e-16 82.4
Msa0719670 MtrunA17_Chr1g0211511 26.400 250 162 5 345 574 8 255 4.75e-15 77.0
Msa0719670 MtrunA17_Chr3g0100921 40.000 100 60 0 486 585 2 101 1.35e-14 71.2
Msa0719670 MtrunA17_Chr2g0297521 41.176 85 49 1 429 513 1 84 6.24e-14 67.8
Msa0719670 MtrunA17_Chr2g0297611 37.805 82 50 1 452 533 10 90 3.69e-12 62.8
Msa0719670 MtrunA17_Chr6g0455841 28.571 196 110 8 366 559 18 185 3.59e-11 62.8
Msa0719670 MtrunA17_Chr5g0410251 41.772 79 41 1 1 74 30 108 4.05e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719670 AT3G18670.1 36.197 547 267 13 117 631 88 584 2.54e-99 316
Msa0719670 AT3G18670.2 34.459 592 271 13 117 631 88 639 1.17e-97 313
Msa0719670 AT5G04700.1 32.174 575 294 16 117 631 118 656 2.27e-69 238
Msa0719670 AT5G04730.1 32.703 529 285 15 151 631 84 589 3.62e-69 236
Msa0719670 AT5G04690.1 32.717 541 297 14 117 631 113 612 3.74e-67 231
Msa0719670 AT5G04690.2 31.818 572 295 14 117 631 113 646 1.04e-66 231
Msa0719670 AT5G04690.3 31.294 572 284 15 117 631 113 632 1.01e-63 223
Msa0719670 AT5G04680.2 30.948 559 273 15 144 631 12 528 3.05e-62 216
Msa0719670 AT5G04680.4 30.612 588 294 16 117 631 105 651 2.84e-61 216
Msa0719670 AT5G04680.1 31.463 588 318 17 117 631 105 680 1.96e-58 209
Msa0719670 AT5G04680.3 30.442 588 281 18 117 631 105 637 2.67e-58 207
Msa0719670 AT5G35810.1 38.235 272 158 6 366 631 65 332 6.09e-55 191
Msa0719670 AT3G54065.1 43.694 222 107 5 423 638 8 217 1.81e-48 170

Find 133 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACTTTCATAAATAATT+TGG 0.159583 5_1:+15072421 None:intergenic
CATTATCGACATGATCTTAA+AGG 0.186021 5_1:-15068100 Msa0719670:CDS
CAGAACAATTCTTTATTCTT+TGG 0.203069 5_1:+15073216 None:intergenic
AAGAGAGTTTCAATGGTTTA+AGG 0.229180 5_1:-15069026 Msa0719670:intron
GTACTACAATGAACCACTTA+TGG 0.252983 5_1:+15068067 None:intergenic
ATGTTAGGGCAAGGCCTTCT+AGG 0.258477 5_1:-15073544 Msa0719670:CDS
TGTATCACTGCTGAGATATT+TGG 0.261550 5_1:-15072766 Msa0719670:intron
GCTGCAGCCTTTACAGTTCC+AGG 0.264273 5_1:-15068363 Msa0719670:CDS
TAGAACAAACAGAGAGAAAA+AGG 0.268023 5_1:+15068145 None:intergenic
TTTCCCTCTATGAATATGTT+AGG 0.273128 5_1:-15073559 None:intergenic
CAAAACTCGATTCTGTGAAT+TGG 0.302690 5_1:+15072801 None:intergenic
AATCATTTAGGCTCATTATA+TGG 0.310793 5_1:-15073379 Msa0719670:CDS
TATATATGACATCGGCTTCC+AGG 0.333476 5_1:-15073143 Msa0719670:CDS
GTGCATGGTAGAGGAAATAA+AGG 0.338215 5_1:-15072962 Msa0719670:CDS
TAAATGATTCCAGGCGCTTT+TGG 0.340866 5_1:+15073393 None:intergenic
TCTCCGTCCCTACGTTGTTA+AGG 0.349696 5_1:-15072581 Msa0719670:CDS
GGCACCCGATTGGGATTTCT+AGG 0.351879 5_1:-15072444 Msa0719670:CDS
CTCCGTCCCTACGTTGTTAA+GGG 0.352434 5_1:-15072580 Msa0719670:CDS
TTGCACCTGGCAGCACATTT+AGG 0.353776 5_1:-15069097 Msa0719670:CDS
ATTCTTCTAGCTGCCGCTAA+TGG 0.360168 5_1:-15072889 Msa0719670:CDS
ATTTATCAGGTAAGGATTGC+TGG 0.365909 5_1:+15072514 None:intergenic
CAAAGAATAAAGAATTGTTC+TGG 0.367690 5_1:-15073215 Msa0719670:CDS
TACTACAATGAACCACTTAT+GGG 0.368135 5_1:+15068068 None:intergenic
CATACGAAAATATGCCTCTA+TGG 0.371634 5_1:+15069221 None:intergenic
TTTGTCAAACACTTTGGATT+TGG 0.373648 5_1:+15072825 None:intergenic
TACACACATTATGAAGTTAT+AGG 0.373654 5_1:-15069409 Msa0719670:CDS
ACTAAGGCCGAGAATTTATC+AGG 0.379921 5_1:+15072501 None:intergenic
TGATGCATCATGGAAAATAA+AGG 0.382865 5_1:-15073491 Msa0719670:CDS
TTGCCTTGGAAGTTATTGTT+TGG 0.387767 5_1:-15068177 Msa0719670:CDS
CTTTAAGATCATGTCGATAA+TGG 0.388292 5_1:+15068101 None:intergenic
CTTCATGCTGCAGTAATTGC+TGG 0.399972 5_1:-15073111 Msa0719670:CDS
CAGTCTGGATAAAGCCTAGA+AGG 0.405167 5_1:+15073530 None:intergenic
GCAACATCTTATACAATTGT+AGG 0.407639 5_1:-15068411 Msa0719670:CDS
CTTCAATTATGTCAGGAATC+AGG 0.410277 5_1:-15069450 Msa0719670:intron
TTTCCAAGTGGCACCCGATT+GGG 0.417478 5_1:-15072453 Msa0719670:CDS
TTTCAAATTCTGAAACAGTC+TGG 0.425070 5_1:+15073515 None:intergenic
TTAGCGGCAGCTAGAAGAAT+AGG 0.427359 5_1:+15072892 None:intergenic
GAACTCGATTATTCCGTGTT+GGG 0.428128 5_1:+15069297 None:intergenic
CTTTCAATGAATATCTCATA+AGG 0.433992 5_1:+15068480 None:intergenic
GGTGGAAACGACGACAAAAC+TGG 0.435847 5_1:-15068342 Msa0719670:CDS
ATCCTTACCTGATAAATTCT+CGG 0.437868 5_1:-15072508 Msa0719670:CDS
ATTGGATTTGTCAAACACTT+TGG 0.438556 5_1:+15072819 None:intergenic
TAGTGAAAGATGGAGAGAAA+TGG 0.438852 5_1:-15068446 Msa0719670:CDS
TCAAACACTTTGGATTTGGT+GGG 0.439060 5_1:+15072829 None:intergenic
ATTATCGACATGATCTTAAA+GGG 0.440142 5_1:-15068099 Msa0719670:CDS
GATATTACAAGAACGATAAT+CGG 0.441300 5_1:+15068021 None:intergenic
GTCAAACACTTTGGATTTGG+TGG 0.443427 5_1:+15072828 None:intergenic
TGCAGAAGCCTCTTTGAGCT+TGG 0.447470 5_1:+15069342 None:intergenic
AAATGCAAAGAGAGTTTCAA+TGG 0.447934 5_1:-15069033 Msa0719670:CDS
CAAACACTTTGGATTTGGTG+GGG 0.451286 5_1:+15072830 None:intergenic
TAATGAGCCTAAATGATTCC+AGG 0.455349 5_1:+15073384 None:intergenic
CCCAGAAACGTTGCTAGAAA+AGG 0.455513 5_1:-15072935 Msa0719670:CDS
GTGATGAGAGGTACGCCTAT+TGG 0.457145 5_1:-15073189 Msa0719670:CDS
GGTACGCCTATTGGAAATAT+CGG 0.457767 5_1:-15073180 Msa0719670:CDS
GGCCGAGAATTTATCAGGTA+AGG 0.460680 5_1:+15072506 None:intergenic
CAACTCATACATTCTGTCAA+TGG 0.460886 5_1:-15069169 Msa0719670:CDS
TCATTTGTTTATTGAACGGA+TGG 0.471650 5_1:+15067951 None:intergenic
TTAAAACAGCCAAAAGCGCC+TGG 0.474873 5_1:-15073402 Msa0719670:CDS
AAAAGCGCCTGGAATCATTT+AGG 0.476909 5_1:-15073391 Msa0719670:CDS
ATTCTCGGCCTTAGTTGCAT+TGG 0.480433 5_1:-15072493 Msa0719670:CDS
AGACATCGTATAGACTCGTT+TGG 0.481995 5_1:-15069130 Msa0719670:CDS
AAACACTTTGGATTTGGTGG+GGG 0.483841 5_1:+15072831 None:intergenic
CAATTCTTTGTGTCCATTAG+CGG 0.484696 5_1:+15072876 None:intergenic
TTGCATTTGCAGAGCAGCAC+CGG 0.486301 5_1:+15069048 None:intergenic
TGTGGAAAATGTGGAATTGT+TGG 0.486891 5_1:-15073085 Msa0719670:CDS
TTCCCTCTATGAATATGTTA+GGG 0.490501 5_1:-15073558 None:intergenic
GTCGTCATTTGTTTATTGAA+CGG 0.491644 5_1:+15067947 None:intergenic
TATATTGATAATGATTGCTC+GGG 0.495481 5_1:+15072609 None:intergenic
AGTGAAAGATGGAGAGAAAT+GGG 0.498200 5_1:-15068445 Msa0719670:CDS
ATATATTGATAATGATTGCT+CGG 0.502639 5_1:+15072608 None:intergenic
AATCCCAATCGGGTGCCACT+TGG 0.507477 5_1:+15072450 None:intergenic
TGAACTCGATTATTCCGTGT+TGG 0.510589 5_1:+15069296 None:intergenic
ACTTTCTCAAGAGCTTGCCT+TGG 0.512356 5_1:-15068191 Msa0719670:CDS
ATACTCCCAAGTGCCATGAT+TGG 0.513042 5_1:+15068045 None:intergenic
CATCTTTCACTAGCTCCTCA+TGG 0.514505 5_1:+15068457 None:intergenic
TGCTGGAAATGTGGAAAATG+TGG 0.517608 5_1:-15073094 Msa0719670:CDS
TATGGCAAAGATTTAACAGC+CGG 0.518073 5_1:-15073361 Msa0719670:CDS
TATCGTTCTTGTAATATCAC+AGG 0.519358 5_1:-15068016 Msa0719670:CDS
TAGCGGCAGCTAGAAGAATA+GGG 0.520879 5_1:+15072893 None:intergenic
TTTGGCCTAGAAATCCCAAT+CGG 0.521150 5_1:+15072439 None:intergenic
AGTTACTTCTGCCGAAGTGT+TGG 0.521693 5_1:-15069379 Msa0719670:CDS
AATAGCAAAGTGCATGGTAG+AGG 0.523953 5_1:-15072971 Msa0719670:intron
TATGTTGTCATGTAAGAAGA+TGG 0.525735 5_1:+15068314 None:intergenic
TCTGATCGTCATAGCAGATC+CGG 0.526463 5_1:-15069067 Msa0719670:CDS
TCAGGTAAGGATTGCTGGAG+AGG 0.527967 5_1:+15072519 None:intergenic
ATTCTTTATTCTTTGGAGAG+TGG 0.532153 5_1:+15073223 None:intergenic
TGGCAATAACTTGTTGCACC+TGG 0.540571 5_1:-15069110 Msa0719670:CDS
CATATTCACTGCATTTCTCA+TGG 0.544524 5_1:-15068295 Msa0719670:CDS
AATTTGAAACTGATGCATCA+TGG 0.545997 5_1:-15073501 Msa0719670:CDS
TGGAATTGTTGGTGAAAGTA+GGG 0.547426 5_1:-15073074 Msa0719670:CDS
TCCATACCGATATTTCCAAT+AGG 0.548152 5_1:+15073174 None:intergenic
CATGAGGAGCTAGTGAAAGA+TGG 0.552759 5_1:-15068456 Msa0719670:CDS
CTGCTATGACGATCAGATGA+AGG 0.554930 5_1:+15069073 None:intergenic
AGCATGAAGAAGCGAAGACC+TGG 0.554946 5_1:+15073125 None:intergenic
GTTCATTGTAGTACCAATCA+TGG 0.555376 5_1:-15068058 Msa0719670:CDS
GTGCCACTTGGAAAAGATGT+AGG 0.556314 5_1:+15072462 None:intergenic
GCCTATTGGAAATATCGGTA+TGG 0.560203 5_1:-15073175 Msa0719670:CDS
ATGATTCCCTTAACAACGTA+GGG 0.560792 5_1:+15072574 None:intergenic
ACCTTGTTCATGATCTGCAC+CGG 0.561022 5_1:+15073342 None:intergenic
GTTTCCACCTGGAACTGTAA+AGG 0.563160 5_1:+15068356 None:intergenic
CATTTGTTTATTGAACGGAT+GGG 0.564108 5_1:+15067952 None:intergenic
AGACCAAACAATAACTTCCA+AGG 0.568693 5_1:+15068174 None:intergenic
TAATAGTTCCAAGCTCAAAG+AGG 0.570868 5_1:-15069350 Msa0719670:CDS
AAGGAAGCCGAAAATGATGA+TGG 0.573881 5_1:-15068510 Msa0719670:CDS
AGGGATATGAAACCCATAAG+TGG 0.578644 5_1:-15068080 Msa0719670:CDS
GAATAAAGAATTGTTCTGGA+AGG 0.580301 5_1:-15073211 Msa0719670:CDS
GTGGAATTGTTGGTGAAAGT+AGG 0.581941 5_1:-15073075 Msa0719670:CDS
GTAGTACCAATCATGGCACT+TGG 0.582602 5_1:-15068051 Msa0719670:CDS
TGCATGGTAGAGGAAATAAA+GGG 0.582858 5_1:-15072961 Msa0719670:CDS
ATGTTGTCATGTAAGAAGAT+GGG 0.590707 5_1:+15068315 None:intergenic
ATGAAATCTTCCGCTCAACA+TGG 0.593061 5_1:-15067981 Msa0719670:CDS
CATATCATTCAACTATCATG+TGG 0.594477 5_1:-15073454 Msa0719670:CDS
TTGGCCTAGAAATCCCAATC+GGG 0.602780 5_1:+15072440 None:intergenic
TACCGAAATAGCAAAGTGCA+TGG 0.611483 5_1:-15072977 Msa0719670:intron
CTCGAATGTATATATGACAT+CGG 0.616856 5_1:-15073151 Msa0719670:CDS
ACATTCTGTCAATGGACGGA+AGG 0.617474 5_1:-15069161 Msa0719670:CDS
TAGTACCAATCATGGCACTT+GGG 0.623895 5_1:-15068050 Msa0719670:CDS
TTCCCTTAACAACGTAGGGA+CGG 0.626973 5_1:+15072578 None:intergenic
TGCAGTAATTGCTGGAAATG+TGG 0.630821 5_1:-15073103 Msa0719670:CDS
AAGGACCTAAATGTGCTGCC+AGG 0.631007 5_1:+15069092 None:intergenic
GCCGTCGATAGCTGCCATAG+AGG 0.633165 5_1:-15069235 Msa0719670:intron
AATGATTCCCTTAACAACGT+AGG 0.635342 5_1:+15072573 None:intergenic
TCATACATTCTGTCAATGGA+CGG 0.635424 5_1:-15069165 Msa0719670:CDS
TCTATGAATATGTTAGGGCA+AGG 0.652204 5_1:-15073553 None:intergenic
TATACCAATGAAAATCAAGA+CGG 0.658060 5_1:+15068239 None:intergenic
ATATGCATGCAAGACGAACA+CGG 0.664176 5_1:-15073039 Msa0719670:CDS
ATGTTGCATGCATCCCAACA+CGG 0.665878 5_1:-15069310 Msa0719670:CDS
TTGTTCTGGAAGGTGATGAG+AGG 0.672631 5_1:-15073201 Msa0719670:CDS
AAAGGCTGCAGCAAACATGA+TGG 0.673254 5_1:+15068374 None:intergenic
GCCGGTGCAGATCATGAACA+AGG 0.680709 5_1:-15073343 Msa0719670:intron
GCAGCCTTTACAGTTCCAGG+TGG 0.696330 5_1:-15068360 Msa0719670:CDS
GGCTGCAGCAAACATGATGG+TGG 0.726270 5_1:+15068377 None:intergenic
GATATTCATTGAAAGCCATG+AGG 0.729208 5_1:-15068472 Msa0719670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATAATATGATACAA+TGG - chr5_1:15069676-15069695 Msa0719670:intron 10.0%
!! TAAAAAAAAAAGATAAGTAA+AGG - chr5_1:15069930-15069949 Msa0719670:intron 10.0%
!! AAAAAAAAAAGATAAGTAAA+GGG - chr5_1:15069931-15069950 Msa0719670:intron 10.0%
!! TATTTAACTATCATTATATA+TGG + chr5_1:15070180-15070199 None:intergenic 10.0%
!! TATATTAGTAATTATATTGT+TGG + chr5_1:15071852-15071871 None:intergenic 10.0%
!! AATATAATTACTAATATAGT+TGG - chr5_1:15071854-15071873 Msa0719670:intron 10.0%
!! TTTATAAAATGTAATCTAAA+AGG + chr5_1:15072593-15072612 None:intergenic 10.0%
!!! TAAAAATGAGTTAATTTTTT+TGG - chr5_1:15072726-15072745 Msa0719670:intron 10.0%
!!! ATATGTTGTTAATTTCTTTT+TGG - chr5_1:15068772-15068791 Msa0719670:intron 15.0%
!! ACTTACTTTCATAAATAATT+TGG + chr5_1:15069077-15069096 None:intergenic 15.0%
!! ATAGTTTAAATAAAGTTAGA+TGG - chr5_1:15069170-15069189 Msa0719670:CDS 15.0%
!! TATTATCATATTACTAACTT+AGG + chr5_1:15069354-15069373 None:intergenic 15.0%
!! TCAATTAATATAATAAGAAG+CGG - chr5_1:15069529-15069548 Msa0719670:intron 15.0%
!! TAAGTTATTTAAAAAGGATA+TGG - chr5_1:15069731-15069750 Msa0719670:intron 15.0%
!!! TTATCTTTTATAAAAAGAAC+CGG + chr5_1:15070041-15070060 None:intergenic 15.0%
!!! AAATATTTTCTTTTTAGAAG+AGG + chr5_1:15070442-15070461 None:intergenic 15.0%
!! TTATTATTAATATGTGATGT+TGG + chr5_1:15070702-15070721 None:intergenic 15.0%
!!! AATTAATGAGTTTTTTTTAC+TGG + chr5_1:15071144-15071163 None:intergenic 15.0%
!!! ATATCAATTGTTATTAGTAT+TGG + chr5_1:15071723-15071742 None:intergenic 15.0%
!! TATACTGTAATTAAATAGAT+TGG + chr5_1:15072889-15072908 None:intergenic 15.0%
!! TTGTCATAAAAATCAGTTTA+TGG + chr5_1:15068201-15068220 None:intergenic 20.0%
!!! ACTTTTTTTATTCAAATGTG+TGG - chr5_1:15068809-15068828 Msa0719670:intron 20.0%
!!! ATATATTGATAATGATTGCT+CGG + chr5_1:15068890-15068909 None:intergenic 20.0%
!!! TCACACTATTCTTTTTTTAT+TGG - chr5_1:15069099-15069118 Msa0719670:CDS 20.0%
!! TAATCTGAATAGTATCTATT+GGG + chr5_1:15069223-15069242 None:intergenic 20.0%
!! TTAATCTGAATAGTATCTAT+TGG + chr5_1:15069224-15069243 None:intergenic 20.0%
!! CAATTAATATAATAAGAAGC+GGG - chr5_1:15069530-15069549 Msa0719670:intron 20.0%
!! ATAATATGATACAATGGTTA+TGG - chr5_1:15069682-15069701 Msa0719670:intron 20.0%
!! ATGGAACAAATATAAGAAAA+AGG - chr5_1:15069750-15069769 Msa0719670:intron 20.0%
!! TAACTTTATATTATTCCTTC+CGG - chr5_1:15070019-15070038 Msa0719670:intron 20.0%
!!! TATCTCTTATAAAAAAGTAC+CGG - chr5_1:15070131-15070150 Msa0719670:intron 20.0%
!! GTAATAAAATATTTGAACAG+AGG - chr5_1:15070229-15070248 Msa0719670:intron 20.0%
!! CCATTTATATATATTCATGT+GGG + chr5_1:15070786-15070805 None:intergenic 20.0%
!! TTTCAAATATGTGATGAATT+AGG - chr5_1:15071175-15071194 Msa0719670:intron 20.0%
!! TTCAAATATGTGATGAATTA+GGG - chr5_1:15071176-15071195 Msa0719670:intron 20.0%
!! TTGTATATACGATCAAATAT+TGG - chr5_1:15071577-15071596 Msa0719670:intron 20.0%
!!! AAATATGGTTCAATATTTTG+CGG + chr5_1:15071815-15071834 None:intergenic 20.0%
!! TTAGTAATTATATTGTTGGA+GGG + chr5_1:15071848-15071867 None:intergenic 20.0%
!! ATTAGTAATTATATTGTTGG+AGG + chr5_1:15071849-15071868 None:intergenic 20.0%
!!! TGTCTTAGCATTTAAAATAT+TGG - chr5_1:15071898-15071917 Msa0719670:intron 20.0%
!!! TATTAAATTTTCCAACACTT+CGG + chr5_1:15072130-15072149 None:intergenic 20.0%
!! TGAAGACAATTAATTTAGAT+GGG + chr5_1:15072498-15072517 None:intergenic 20.0%
!! TTGAAGACAATTAATTTAGA+TGG + chr5_1:15072499-15072518 None:intergenic 20.0%
! AATCATTTAGGCTCATTATA+TGG - chr5_1:15068116-15068135 Msa0719670:CDS 25.0%
!! GGAACTTTTAAATCAGTTAA+TGG + chr5_1:15068180-15068199 None:intergenic 25.0%
! ATCAAACTCTTGAATGTTAA+TGG - chr5_1:15068233-15068252 Msa0719670:CDS 25.0%
! CAGAACAATTCTTTATTCTT+TGG + chr5_1:15068282-15068301 None:intergenic 25.0%
! CAAAGAATAAAGAATTGTTC+TGG - chr5_1:15068280-15068299 Msa0719670:CDS 25.0%
!!! TATATTGATAATGATTGCTC+GGG + chr5_1:15068889-15068908 None:intergenic 25.0%
!!! ATTCTTTTTTTATTGGTACC+AGG - chr5_1:15069106-15069125 Msa0719670:CDS 25.0%
! CAAAATGTATTTCAGAGTAT+TGG + chr5_1:15069140-15069159 None:intergenic 25.0%
! TGATAATAACGAATTGATGA+TGG - chr5_1:15069366-15069385 Msa0719670:CDS 25.0%
!! ATTTTAAATGATCATCGTCA+TGG + chr5_1:15069971-15069990 None:intergenic 25.0%
! ATAAAATATTTGAACAGAGG+AGG - chr5_1:15070232-15070251 Msa0719670:intron 25.0%
! TTCAAATGGAGAAAGATAAA+TGG + chr5_1:15070415-15070434 None:intergenic 25.0%
! TTAGAAGAGGTTTATTCAAA+TGG + chr5_1:15070429-15070448 None:intergenic 25.0%
! CCCACATGAATATATATAAA+TGG - chr5_1:15070783-15070802 Msa0719670:intron 25.0%
! GCCATTTATATATATTCATG+TGG + chr5_1:15070787-15070806 None:intergenic 25.0%
!! TGATATCGATATTTCTCTTT+TGG - chr5_1:15070845-15070864 Msa0719670:intron 25.0%
!! ATCACATATTTGAAATGTGA+GGG + chr5_1:15071170-15071189 None:intergenic 25.0%
! TCAAATATGTGATGAATTAG+GGG - chr5_1:15071177-15071196 Msa0719670:intron 25.0%
!!! TTCTTTTTTCAAAGAAACGA+GGG + chr5_1:15071280-15071299 None:intergenic 25.0%
! CAATTCGAATTAAGCATATA+AGG + chr5_1:15071991-15072010 None:intergenic 25.0%
! TACACACATTATGAAGTTAT+AGG - chr5_1:15072086-15072105 Msa0719670:intron 25.0%
!! CTATACCATGTTTTGTAAAA+TGG + chr5_1:15072564-15072583 None:intergenic 25.0%
!! CATTTTACAAAACATGGTAT+AGG - chr5_1:15072562-15072581 Msa0719670:CDS 25.0%
! GTGTTTCAACAACATTTATT+AGG + chr5_1:15072632-15072651 None:intergenic 25.0%
!!! ATTTTAGAGTACTGAACATA+TGG + chr5_1:15072654-15072673 None:intergenic 25.0%
! ACTTATATTTCGTAACAGAA+GGG + chr5_1:15072707-15072726 None:intergenic 25.0%
! TACTTATATTTCGTAACAGA+AGG + chr5_1:15072708-15072727 None:intergenic 25.0%
! TAACGAAAGTTTGATGTATT+TGG + chr5_1:15072753-15072772 None:intergenic 25.0%
! ACTGTAATTAAATAGATTGG+TGG + chr5_1:15072886-15072905 None:intergenic 25.0%
! CTTTCAATGAATATCTCATA+AGG + chr5_1:15073018-15073037 None:intergenic 25.0%
! TATACCAATGAAAATCAAGA+CGG + chr5_1:15073259-15073278 None:intergenic 25.0%
! ATTATCGACATGATCTTAAA+GGG - chr5_1:15073396-15073415 Msa0719670:CDS 25.0%
! GATATTACAAGAACGATAAT+CGG + chr5_1:15073477-15073496 None:intergenic 25.0%
!! TTTCAAATTCTGAAACAGTC+TGG + chr5_1:15067983-15068002 None:intergenic 30.0%
! AATTTGAAACTGATGCATCA+TGG - chr5_1:15067994-15068013 Msa0719670:CDS 30.0%
TGATGCATCATGGAAAATAA+AGG - chr5_1:15068004-15068023 Msa0719670:CDS 30.0%
CATATCATTCAACTATCATG+TGG - chr5_1:15068041-15068060 Msa0719670:CDS 30.0%
TAACATTCAAGAGTTTGATG+AGG + chr5_1:15068232-15068251 None:intergenic 30.0%
! ATTCTTTATTCTTTGGAGAG+TGG + chr5_1:15068275-15068294 None:intergenic 30.0%
! GAATAAAGAATTGTTCTGGA+AGG - chr5_1:15068284-15068303 Msa0719670:CDS 30.0%
CTCGAATGTATATATGACAT+CGG - chr5_1:15068344-15068363 Msa0719670:CDS 30.0%
TTTGTCAAACACTTTGGATT+TGG + chr5_1:15068673-15068692 None:intergenic 30.0%
ATTGGATTTGTCAAACACTT+TGG + chr5_1:15068679-15068698 None:intergenic 30.0%
ATCCTTACCTGATAAATTCT+CGG - chr5_1:15068987-15069006 Msa0719670:intron 30.0%
! TCTCTTTGAGTTAAAACATG+TGG - chr5_1:15069294-15069313 Msa0719670:intron 30.0%
! CTCTTTGAGTTAAAACATGT+GGG - chr5_1:15069295-15069314 Msa0719670:intron 30.0%
ACTTCAAATGATGAATCGTT+CGG - chr5_1:15069805-15069824 Msa0719670:intron 30.0%
AACCAAACTACAGATTACTA+GGG - chr5_1:15069870-15069889 Msa0719670:intron 30.0%
TTGTTAATCCTTTAGATCTC+AGG + chr5_1:15069907-15069926 None:intergenic 30.0%
! CTTTTATAAAAAGAACCGGA+AGG + chr5_1:15070037-15070056 None:intergenic 30.0%
!! TCTTATAAAAAAGTACCGGA+AGG - chr5_1:15070135-15070154 Msa0719670:intron 30.0%
ACCACTTAAAGCAAAACTAA+AGG - chr5_1:15070347-15070366 Msa0719670:intron 30.0%
CCACTTAAAGCAAAACTAAA+GGG - chr5_1:15070348-15070367 Msa0719670:intron 30.0%
AGTATGATATTGCCGAAATT+GGG - chr5_1:15070512-15070531 Msa0719670:intron 30.0%
CGTTGTTCTAATAATGCTTT+CGG - chr5_1:15070639-15070658 Msa0719670:intron 30.0%
GTTGTTCTAATAATGCTTTC+GGG - chr5_1:15070640-15070659 Msa0719670:intron 30.0%
!! TCATAAAAGTACCGGTTAAA+AGG + chr5_1:15070734-15070753 None:intergenic 30.0%
! AACTTGTGTCATAAAAGTAC+CGG + chr5_1:15070742-15070761 None:intergenic 30.0%
TCATGTGGGTAATAAAAAAC+AGG + chr5_1:15070772-15070791 None:intergenic 30.0%
!! ATGGCTCAAAGCTTTTATTT+AGG - chr5_1:15070802-15070821 Msa0719670:intron 30.0%
!! CTCAAAGCTTTTATTTAGGT+TGG - chr5_1:15070806-15070825 Msa0719670:intron 30.0%
!!! CTGATTTTGTTGATTTGTTC+AGG - chr5_1:15070999-15071018 Msa0719670:intron 30.0%
TTCCATTACCTAGATAGTAA+TGG - chr5_1:15071074-15071093 Msa0719670:intron 30.0%
TACCATTACTATCTAGGTAA+TGG + chr5_1:15071079-15071098 None:intergenic 30.0%
TTTACGTACCATTACTATCT+AGG + chr5_1:15071085-15071104 None:intergenic 30.0%
! CATCACATATTTGAAATGTG+AGG + chr5_1:15071171-15071190 None:intergenic 30.0%
!!! TCTTTTTTCAAAGAAACGAG+GGG + chr5_1:15071279-15071298 None:intergenic 30.0%
!!! GTTCTTTTTTCAAAGAAACG+AGG + chr5_1:15071281-15071300 None:intergenic 30.0%
ATTCAAAAAACGTGTTAGCA+TGG - chr5_1:15071442-15071461 Msa0719670:intron 30.0%
TCATGATGTGATTTATGAGT+CGG + chr5_1:15071474-15071493 None:intergenic 30.0%
! ACATGTTTTCCTACTGATAT+AGG + chr5_1:15071665-15071684 None:intergenic 30.0%
GAGGGATTATGTTTCAAATA+TGG + chr5_1:15071830-15071849 None:intergenic 30.0%
TGATTCCTGACATAATTGAA+GGG + chr5_1:15072046-15072065 None:intergenic 30.0%
AAATGCAAAGAGAGTTTCAA+TGG - chr5_1:15072462-15072481 Msa0719670:CDS 30.0%
AAGAGAGTTTCAATGGTTTA+AGG - chr5_1:15072469-15072488 Msa0719670:CDS 30.0%
AATTACACTCCAACAGTATT+AGG - chr5_1:15072671-15072690 Msa0719670:intron 30.0%
CTTATATTTCGTAACAGAAG+GGG + chr5_1:15072706-15072725 None:intergenic 30.0%
AACGAAATCTAAGCAAAAGT+TGG + chr5_1:15072777-15072796 None:intergenic 30.0%
ATGTTGAAACACATGATTCT+TGG + chr5_1:15072829-15072848 None:intergenic 30.0%
AATAGATTGGTGGAATTATG+TGG + chr5_1:15072876-15072895 None:intergenic 30.0%
! AGTTTTACATCCCAAGTTTA+AGG - chr5_1:15072966-15072985 Msa0719670:CDS 30.0%
! CTTCTTACCATCATCATTTT+CGG + chr5_1:15072995-15073014 None:intergenic 30.0%
GCAACATCTTATACAATTGT+AGG - chr5_1:15073084-15073103 Msa0719670:CDS 30.0%
ATGTTGTCATGTAAGAAGAT+GGG + chr5_1:15073183-15073202 None:intergenic 30.0%
TATGTTGTCATGTAAGAAGA+TGG + chr5_1:15073184-15073203 None:intergenic 30.0%
TAGAACAAACAGAGAGAAAA+AGG + chr5_1:15073353-15073372 None:intergenic 30.0%
!! CTTTAAGATCATGTCGATAA+TGG + chr5_1:15073397-15073416 None:intergenic 30.0%
CATTATCGACATGATCTTAA+AGG - chr5_1:15073395-15073414 Msa0719670:CDS 30.0%
TACTACAATGAACCACTTAT+GGG + chr5_1:15073430-15073449 None:intergenic 30.0%
TATCGTTCTTGTAATATCAC+AGG - chr5_1:15073479-15073498 Msa0719670:CDS 30.0%
CATTTGTTTATTGAACGGAT+GGG + chr5_1:15073546-15073565 None:intergenic 30.0%
TCATTTGTTTATTGAACGGA+TGG + chr5_1:15073547-15073566 None:intergenic 30.0%
TAATGAGCCTAAATGATTCC+AGG + chr5_1:15068114-15068133 None:intergenic 35.0%
TATGGCAAAGATTTAACAGC+CGG - chr5_1:15068134-15068153 Msa0719670:CDS 35.0%
TTGAATGTTAATGGCAGATG+TGG - chr5_1:15068242-15068261 Msa0719670:CDS 35.0%
TCCATACCGATATTTCCAAT+AGG + chr5_1:15068324-15068343 None:intergenic 35.0%
TGTGGAAAATGTGGAATTGT+TGG - chr5_1:15068410-15068429 Msa0719670:CDS 35.0%
! TGGAATTGTTGGTGAAAGTA+GGG - chr5_1:15068421-15068440 Msa0719670:CDS 35.0%
!! TACCATGCACTTTGCTATTT+CGG + chr5_1:15068523-15068542 None:intergenic 35.0%
TGCATGGTAGAGGAAATAAA+GGG - chr5_1:15068534-15068553 Msa0719670:CDS 35.0%
CAATTCTTTGTGTCCATTAG+CGG + chr5_1:15068622-15068641 None:intergenic 35.0%
! TCAAACACTTTGGATTTGGT+GGG + chr5_1:15068669-15068688 None:intergenic 35.0%
CAAAACTCGATTCTGTGAAT+TGG + chr5_1:15068697-15068716 None:intergenic 35.0%
TGTATCACTGCTGAGATATT+TGG - chr5_1:15068729-15068748 Msa0719670:intron 35.0%
ATGATTCCCTTAACAACGTA+GGG + chr5_1:15068924-15068943 None:intergenic 35.0%
AATGATTCCCTTAACAACGT+AGG + chr5_1:15068925-15068944 None:intergenic 35.0%
!!! TCTGATTCTGAGATTTTGCT+AGG + chr5_1:15068955-15068974 None:intergenic 35.0%
ATTTATCAGGTAAGGATTGC+TGG + chr5_1:15068984-15069003 None:intergenic 35.0%
!! CATTTTAGCCAATGCAACTA+AGG + chr5_1:15069013-15069032 None:intergenic 35.0%
TAAAACATGTGGGTTCAATG+TGG - chr5_1:15069305-15069324 Msa0719670:CDS 35.0%
! GTTGTGAGTTTTTACGGTTT+TGG - chr5_1:15069552-15069571 Msa0719670:intron 35.0%
!!! TTTTTACGGTTTTGGTGATG+TGG - chr5_1:15069560-15069579 Msa0719670:intron 35.0%
TGGTGCAATTACTGAGATTA+TGG - chr5_1:15069580-15069599 Msa0719670:intron 35.0%
GGTGCAATTACTGAGATTAT+GGG - chr5_1:15069581-15069600 Msa0719670:intron 35.0%
CAATTACTGAGATTATGGGT+GGG - chr5_1:15069585-15069604 Msa0719670:intron 35.0%
!! ATCACTTGAGTTGAATCACT+CGG + chr5_1:15069779-15069798 None:intergenic 35.0%
CTTCAAATGATGAATCGTTC+GGG - chr5_1:15069806-15069825 Msa0719670:intron 35.0%
CAACCAAACTACAGATTACT+AGG - chr5_1:15069869-15069888 Msa0719670:intron 35.0%
ACCAAACTACAGATTACTAG+GGG - chr5_1:15069871-15069890 Msa0719670:intron 35.0%
! CTCTTTTTCCTGAGATCTAA+AGG - chr5_1:15069896-15069915 Msa0719670:intron 35.0%
CACTAATGTTGATCAAGAAC+TGG + chr5_1:15069997-15070016 None:intergenic 35.0%
ATATCTACATACTCTCCTTC+CGG + chr5_1:15070153-15070172 None:intergenic 35.0%
!!! CCCTTTAGTTTTGCTTTAAG+TGG + chr5_1:15070351-15070370 None:intergenic 35.0%
TTAAAGCAAAACTAAAGGGC+TGG - chr5_1:15070352-15070371 Msa0719670:intron 35.0%
GAGTATGATATTGCCGAAAT+TGG - chr5_1:15070511-15070530 Msa0719670:intron 35.0%
! AAAGACCTATGCCTTTTAAC+CGG - chr5_1:15070720-15070739 Msa0719670:intron 35.0%
! TTTTGGCCAGTAAAGCTTTT+GGG - chr5_1:15070862-15070881 Msa0719670:intron 35.0%
CTACTTTGTAAGATATTCCG+TGG - chr5_1:15071026-15071045 Msa0719670:intron 35.0%
TAACAACTCCAAGACTGATT+AGG - chr5_1:15072019-15072038 Msa0719670:intron 35.0%
CTGATTCCTGACATAATTGA+AGG + chr5_1:15072047-15072066 None:intergenic 35.0%
CTTCAATTATGTCAGGAATC+AGG - chr5_1:15072045-15072064 Msa0719670:intron 35.0%
TAATAGTTCCAAGCTCAAAG+AGG - chr5_1:15072145-15072164 Msa0719670:intron 35.0%
CATACGAAAATATGCCTCTA+TGG + chr5_1:15072277-15072296 None:intergenic 35.0%
CAACTCATACATTCTGTCAA+TGG - chr5_1:15072326-15072345 Msa0719670:intron 35.0%
TCATACATTCTGTCAATGGA+CGG - chr5_1:15072330-15072349 Msa0719670:intron 35.0%
!! TCAACGTATACTAGCTTTGT+TGG - chr5_1:15072538-15072557 Msa0719670:CDS 35.0%
!! GTTGGCCATTTTACAAAACA+TGG - chr5_1:15072556-15072575 Msa0719670:CDS 35.0%
TGTTTCGTACCTAATACTGT+TGG + chr5_1:15072683-15072702 None:intergenic 35.0%
! TTGGTGGAATTATGTGGTTT+TGG + chr5_1:15072870-15072889 None:intergenic 35.0%
! TTTTCGGCTTCCTTAAACTT+GGG + chr5_1:15072979-15072998 None:intergenic 35.0%
! ATTTTCGGCTTCCTTAAACT+TGG + chr5_1:15072980-15072999 None:intergenic 35.0%
GATATTCATTGAAAGCCATG+AGG - chr5_1:15073023-15073042 Msa0719670:CDS 35.0%
TAGTGAAAGATGGAGAGAAA+TGG - chr5_1:15073049-15073068 Msa0719670:CDS 35.0%
AGTGAAAGATGGAGAGAAAT+GGG - chr5_1:15073050-15073069 Msa0719670:CDS 35.0%
CATATTCACTGCATTTCTCA+TGG - chr5_1:15073200-15073219 Msa0719670:CDS 35.0%
! ACTTCCGTCTTGATTTTCAT+TGG - chr5_1:15073252-15073271 Msa0719670:intron 35.0%
TTGCCTTGGAAGTTATTGTT+TGG - chr5_1:15073318-15073337 Msa0719670:intron 35.0%
AGACCAAACAATAACTTCCA+AGG + chr5_1:15073324-15073343 None:intergenic 35.0%
GTACTACAATGAACCACTTA+TGG + chr5_1:15073431-15073450 None:intergenic 35.0%
GTTCATTGTAGTACCAATCA+TGG - chr5_1:15073437-15073456 Msa0719670:CDS 35.0%
! TAAATGATTCCAGGCGCTTT+TGG + chr5_1:15068105-15068124 None:intergenic 40.0%
!! AAAAGCGCCTGGAATCATTT+AGG - chr5_1:15068104-15068123 Msa0719670:CDS 40.0%
GGTACGCCTATTGGAAATAT+CGG - chr5_1:15068315-15068334 Msa0719670:CDS 40.0%
GCCTATTGGAAATATCGGTA+TGG - chr5_1:15068320-15068339 Msa0719670:CDS 40.0%
!! TATATATGACATCGGCTTCC+AGG - chr5_1:15068352-15068371 Msa0719670:CDS 40.0%
TGCAGTAATTGCTGGAAATG+TGG - chr5_1:15068392-15068411 Msa0719670:CDS 40.0%
TGCTGGAAATGTGGAAAATG+TGG - chr5_1:15068401-15068420 Msa0719670:CDS 40.0%
! GTGGAATTGTTGGTGAAAGT+AGG - chr5_1:15068420-15068439 Msa0719670:CDS 40.0%
ATATGCATGCAAGACGAACA+CGG - chr5_1:15068456-15068475 Msa0719670:CDS 40.0%
TACCGAAATAGCAAAGTGCA+TGG - chr5_1:15068518-15068537 Msa0719670:CDS 40.0%
AATAGCAAAGTGCATGGTAG+AGG - chr5_1:15068524-15068543 Msa0719670:CDS 40.0%
GTGCATGGTAGAGGAAATAA+AGG - chr5_1:15068533-15068552 Msa0719670:CDS 40.0%
!! CCTTTTCTAGCAACGTTTCT+GGG + chr5_1:15068563-15068582 None:intergenic 40.0%
!! TCCTTTTCTAGCAACGTTTC+TGG + chr5_1:15068564-15068583 None:intergenic 40.0%
!! AAACACTTTGGATTTGGTGG+GGG + chr5_1:15068667-15068686 None:intergenic 40.0%
!! CAAACACTTTGGATTTGGTG+GGG + chr5_1:15068668-15068687 None:intergenic 40.0%
GTCAAACACTTTGGATTTGG+TGG + chr5_1:15068670-15068689 None:intergenic 40.0%
GTTTGATCCATGATCAGATG+TGG - chr5_1:15068831-15068850 Msa0719670:intron 40.0%
ACTAAGGCCGAGAATTTATC+AGG + chr5_1:15068997-15069016 None:intergenic 40.0%
! ATGCCTACATCTTTTCCAAG+TGG - chr5_1:15069030-15069049 Msa0719670:CDS 40.0%
TTTGGCCTAGAAATCCCAAT+CGG + chr5_1:15069059-15069078 None:intergenic 40.0%
!! AGAGTATTGGAATGTTTGCC+TGG + chr5_1:15069127-15069146 None:intergenic 40.0%
CATGGAAAATCTCAGTGTTG+AGG + chr5_1:15069451-15069470 None:intergenic 40.0%
ATGTGAGATTGAGGTTCAAC+TGG - chr5_1:15069474-15069493 Msa0719670:intron 40.0%
!!! AAGCGGGTTGTGAGTTTTTA+CGG - chr5_1:15069546-15069565 Msa0719670:intron 40.0%
GCAATTACTGAGATTATGGG+TGG - chr5_1:15069584-15069603 Msa0719670:intron 40.0%
TGAGATTATGGGTGGGAATT+AGG - chr5_1:15069592-15069611 Msa0719670:intron 40.0%
ATTAGGCTTAAGAGGGGATT+AGG - chr5_1:15069609-15069628 Msa0719670:intron 40.0%
TTAGGCTTAAGAGGGGATTA+GGG - chr5_1:15069610-15069629 Msa0719670:intron 40.0%
!! GGGAGAACAAGTTGGATTTT+TGG - chr5_1:15069826-15069845 Msa0719670:intron 40.0%
CCAAACTACAGATTACTAGG+GGG - chr5_1:15069872-15069891 Msa0719670:intron 40.0%
AGGATTGCTATATGTTGCGA+AGG - chr5_1:15070252-15070271 Msa0719670:intron 40.0%
AAAGATAAATGGTGCGAGAG+AGG + chr5_1:15070404-15070423 None:intergenic 40.0%
TTGGACGAAGTTCCCAATTT+CGG + chr5_1:15070527-15070546 None:intergenic 40.0%
AATTGGGAACTTCGTCCAAA+AGG - chr5_1:15070528-15070547 Msa0719670:intron 40.0%
! CAGCAACACATGTTACCTTT+TGG + chr5_1:15070546-15070565 None:intergenic 40.0%
ACCACAAAAGATTTCTTCCG+CGG - chr5_1:15070582-15070601 Msa0719670:intron 40.0%
!! AAGTACCGGTTAAAAGGCAT+AGG + chr5_1:15070728-15070747 None:intergenic 40.0%
! CTTTTGGCCAGTAAAGCTTT+TGG - chr5_1:15070861-15070880 Msa0719670:intron 40.0%
GACATACCCAAAAGCTTTAC+TGG + chr5_1:15070871-15070890 None:intergenic 40.0%
CCAACAAATATGCAACTCCA+CGG + chr5_1:15071046-15071065 None:intergenic 40.0%
TATGTGATGAATTAGGGGAG+CGG - chr5_1:15071182-15071201 Msa0719670:intron 40.0%
CATGCCAATAAGAGTGAAGT+CGG - chr5_1:15071353-15071372 Msa0719670:intron 40.0%
!! TTTGCCGACTTCACTCTTAT+TGG + chr5_1:15071360-15071379 None:intergenic 40.0%
AGAGTGAAGTCGGCAAAATT+TGG - chr5_1:15071363-15071382 Msa0719670:intron 40.0%
! AGTCGGCAAAATTTGGAACA+AGG - chr5_1:15071370-15071389 Msa0719670:intron 40.0%
! GTCGGCAAAATTTGGAACAA+GGG - chr5_1:15071371-15071390 Msa0719670:intron 40.0%
AAAACTGTCTGCAACTCATG+CGG - chr5_1:15071636-15071655 Msa0719670:intron 40.0%
ATGCGGAAACCTATATCAGT+AGG - chr5_1:15071653-15071672 Msa0719670:intron 40.0%
!! TCGATTTGTTGACTGGTGTA+TGG + chr5_1:15071787-15071806 None:intergenic 40.0%
TAGGTCCCTTCAATTATGTC+AGG - chr5_1:15072038-15072057 Msa0719670:intron 40.0%
GAACTCGATTATTCCGTGTT+GGG + chr5_1:15072201-15072220 None:intergenic 40.0%
TGAACTCGATTATTCCGTGT+TGG + chr5_1:15072202-15072221 None:intergenic 40.0%
TCGAGTTCATAAATGCCATG+AGG - chr5_1:15072213-15072232 Msa0719670:intron 40.0%
CGAGTTCATAAATGCCATGA+GGG - chr5_1:15072214-15072233 Msa0719670:intron 40.0%
TCGACGGCTGAAAGAAAATT+AGG + chr5_1:15072248-15072267 None:intergenic 40.0%
AGACATCGTATAGACTCGTT+TGG - chr5_1:15072365-15072384 Msa0719670:intron 40.0%
AAGGAAGCCGAAAATGATGA+TGG - chr5_1:15072985-15073004 Msa0719670:intron 40.0%
AGGGATATGAAACCCATAAG+TGG - chr5_1:15073415-15073434 Msa0719670:CDS 40.0%
TAGTACCAATCATGGCACTT+GGG - chr5_1:15073445-15073464 Msa0719670:CDS 40.0%
ATGAAATCTTCCGCTCAACA+TGG - chr5_1:15073514-15073533 Msa0719670:CDS 40.0%
! TGGGATTTTTCCATGTTGAG+CGG + chr5_1:15073527-15073546 None:intergenic 40.0%
CAGTCTGGATAAAGCCTAGA+AGG + chr5_1:15067968-15067987 None:intergenic 45.0%
!! TTAAAACAGCCAAAAGCGCC+TGG - chr5_1:15068093-15068112 Msa0719670:CDS 45.0%
ACCTTGTTCATGATCTGCAC+CGG + chr5_1:15068156-15068175 None:intergenic 45.0%
!! TTGTTCTGGAAGGTGATGAG+AGG - chr5_1:15068294-15068313 Msa0719670:CDS 45.0%
CTTCATGCTGCAGTAATTGC+TGG - chr5_1:15068384-15068403 Msa0719670:CDS 45.0%
CCCAGAAACGTTGCTAGAAA+AGG - chr5_1:15068560-15068579 Msa0719670:intron 45.0%
TAGCGGCAGCTAGAAGAATA+GGG + chr5_1:15068605-15068624 None:intergenic 45.0%
TTAGCGGCAGCTAGAAGAAT+AGG + chr5_1:15068606-15068625 None:intergenic 45.0%
! ATTCTTCTAGCTGCCGCTAA+TGG - chr5_1:15068606-15068625 Msa0719670:intron 45.0%
!!! GGGGGTTTTGGAGTAAAGAT+AGG + chr5_1:15068649-15068668 None:intergenic 45.0%
!!! TTTGGATTTGGTGGGGGTTT+TGG + chr5_1:15068661-15068680 None:intergenic 45.0%
CTCAAAGCCACATCTGATCA+TGG + chr5_1:15068841-15068860 None:intergenic 45.0%
TTCCCTTAACAACGTAGGGA+CGG + chr5_1:15068920-15068939 None:intergenic 45.0%
GGCCGAGAATTTATCAGGTA+AGG + chr5_1:15068992-15069011 None:intergenic 45.0%
ATTCTCGGCCTTAGTTGCAT+TGG - chr5_1:15069002-15069021 Msa0719670:intron 45.0%
!! GTGCCACTTGGAAAAGATGT+AGG + chr5_1:15069036-15069055 None:intergenic 45.0%
TTGGCCTAGAAATCCCAATC+GGG + chr5_1:15069058-15069077 None:intergenic 45.0%
TCCATGAGCATGTGAGATTG+AGG - chr5_1:15069465-15069484 Msa0719670:intron 45.0%
ACCTCAATCTCACATGCTCA+TGG + chr5_1:15069469-15069488 None:intergenic 45.0%
GGTGGGAATTAGGCTTAAGA+GGG - chr5_1:15069602-15069621 Msa0719670:intron 45.0%
GTGGGAATTAGGCTTAAGAG+GGG - chr5_1:15069603-15069622 Msa0719670:intron 45.0%
AATCGTTCGGGAGAACAAGT+TGG - chr5_1:15069818-15069837 Msa0719670:intron 45.0%
CCCCCTAGTAATCTGTAGTT+TGG + chr5_1:15069875-15069894 None:intergenic 45.0%
ACCTGGATACGACAAAACGT+GGG - chr5_1:15070287-15070306 Msa0719670:intron 45.0%
TTGCATTGCAGATTTGAGCG+TGG - chr5_1:15070471-15070490 Msa0719670:intron 45.0%
TTGCAGATTTGAGCGTGGAA+AGG - chr5_1:15070476-15070495 Msa0719670:intron 45.0%
! ACCGCGGAAGAAATCTTTTG+TGG + chr5_1:15070586-15070605 None:intergenic 45.0%
CCGTGGAGTTGCATATTTGT+TGG - chr5_1:15071043-15071062 Msa0719670:intron 45.0%
! TTGCAGACAGTTTTGCACGT+TGG + chr5_1:15071630-15071649 None:intergenic 45.0%
!! GGTTCGATCGATTTGTTGAC+TGG + chr5_1:15071794-15071813 None:intergenic 45.0%
TGAAGGGACCTAATCAGTCT+TGG + chr5_1:15072030-15072049 None:intergenic 45.0%
AGTTACTTCTGCCGAAGTGT+TGG - chr5_1:15072116-15072135 Msa0719670:intron 45.0%
ATGTTGCATGCATCCCAACA+CGG - chr5_1:15072185-15072204 Msa0719670:intron 45.0%
! ATTAGGATTAGCGTCCCTCA+TGG + chr5_1:15072231-15072250 None:intergenic 45.0%
ACATTCTGTCAATGGACGGA+AGG - chr5_1:15072334-15072353 Msa0719670:intron 45.0%
!! TGGCAATAACTTGTTGCACC+TGG - chr5_1:15072385-15072404 Msa0719670:intron 45.0%
CTGCTATGACGATCAGATGA+AGG + chr5_1:15072425-15072444 None:intergenic 45.0%
TCTGATCGTCATAGCAGATC+CGG - chr5_1:15072428-15072447 Msa0719670:CDS 45.0%
CATCTTTCACTAGCTCCTCA+TGG + chr5_1:15073041-15073060 None:intergenic 45.0%
CATGAGGAGCTAGTGAAAGA+TGG - chr5_1:15073039-15073058 Msa0719670:CDS 45.0%
AAAGGCTGCAGCAAACATGA+TGG + chr5_1:15073124-15073143 None:intergenic 45.0%
GTTTCCACCTGGAACTGTAA+AGG + chr5_1:15073142-15073161 None:intergenic 45.0%
ACTTTCTCAAGAGCTTGCCT+TGG - chr5_1:15073304-15073323 Msa0719670:intron 45.0%
GTAGTACCAATCATGGCACT+TGG - chr5_1:15073444-15073463 Msa0719670:CDS 45.0%
ATACTCCCAAGTGCCATGAT+TGG + chr5_1:15073453-15073472 None:intergenic 45.0%
!! TATTAATAAGTTATTTAAAA+AGG - chr5_1:15069725-15069744 Msa0719670:intron 5.0%
!!! TCTTTTTATTATTTTTTTTA+AGG - chr5_1:15070954-15070973 Msa0719670:intron 5.0%
ATGTTAGGGCAAGGCCTTCT+AGG - chr5_1:15067951-15067970 Msa0719670:CDS 50.0%
! GTGATGAGAGGTACGCCTAT+TGG - chr5_1:15068306-15068325 Msa0719670:CDS 50.0%
AGCATGAAGAAGCGAAGACC+TGG + chr5_1:15068373-15068392 None:intergenic 50.0%
! GCGCTTGTTGCACGTTATAC+TGG - chr5_1:15068492-15068511 Msa0719670:CDS 50.0%
TCTCCGTCCCTACGTTGTTA+AGG - chr5_1:15068914-15068933 Msa0719670:intron 50.0%
CTCCGTCCCTACGTTGTTAA+GGG - chr5_1:15068915-15068934 Msa0719670:intron 50.0%
TCAGGTAAGGATTGCTGGAG+AGG + chr5_1:15068979-15068998 None:intergenic 50.0%
! TTTTCCAAGTGGCACCCGAT+TGG - chr5_1:15069041-15069060 Msa0719670:CDS 50.0%
TTTCCAAGTGGCACCCGATT+GGG - chr5_1:15069042-15069061 Msa0719670:CDS 50.0%
GGGTGGGAATTAGGCTTAAG+AGG - chr5_1:15069601-15069620 Msa0719670:intron 50.0%
GAAGGAAATGATGCACGACC+TGG - chr5_1:15070270-15070289 Msa0719670:intron 50.0%
GACCTGGATACGACAAAACG+TGG - chr5_1:15070286-15070305 Msa0719670:intron 50.0%
ATTTCTTCCGCGGTCCAATG+TGG - chr5_1:15070592-15070611 Msa0719670:intron 50.0%
CCTTTCTGCCTATGCCACAT+TGG + chr5_1:15070609-15070628 None:intergenic 50.0%
CCAATGTGGCATAGGCAGAA+AGG - chr5_1:15070606-15070625 Msa0719670:intron 50.0%
TGCAGAAGCCTCTTTGAGCT+TGG + chr5_1:15072156-15072175 None:intergenic 50.0%
TTGCACCTGGCAGCACATTT+AGG - chr5_1:15072398-15072417 Msa0719670:intron 50.0%
AAGGACCTAAATGTGCTGCC+AGG + chr5_1:15072406-15072425 None:intergenic 50.0%
TTGCATTTGCAGAGCAGCAC+CGG + chr5_1:15072450-15072469 None:intergenic 50.0%
! GTTTTGTCGTCGTTTCCACC+TGG + chr5_1:15073153-15073172 None:intergenic 50.0%
GGTGGAAACGACGACAAAAC+TGG - chr5_1:15073153-15073172 Msa0719670:CDS 50.0%
GCCGGTGCAGATCATGAACA+AGG - chr5_1:15068152-15068171 Msa0719670:CDS 55.0%
!! AATCCCAATCGGGTGCCACT+TGG + chr5_1:15069048-15069067 None:intergenic 55.0%
GGCACCCGATTGGGATTTCT+AGG - chr5_1:15069051-15069070 Msa0719670:CDS 55.0%
! GCCCACGTTTTGTCGTATCC+AGG + chr5_1:15070291-15070310 None:intergenic 55.0%
GCCTCTATGGCAGCTATCGA+CGG + chr5_1:15072264-15072283 None:intergenic 55.0%
GGCTGCAGCAAACATGATGG+TGG + chr5_1:15073121-15073140 None:intergenic 55.0%
GCTGCAGCCTTTACAGTTCC+AGG - chr5_1:15073132-15073151 Msa0719670:CDS 55.0%
GCAGCCTTTACAGTTCCAGG+TGG - chr5_1:15073135-15073154 Msa0719670:CDS 55.0%
TCCGCGGTCCAATGTGGCAT+AGG - chr5_1:15070598-15070617 Msa0719670:intron 60.0%
GCCTATGCCACATTGGACCG+CGG + chr5_1:15070602-15070621 None:intergenic 60.0%
GCCGTCGATAGCTGCCATAG+AGG - chr5_1:15072260-15072279 Msa0719670:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 15067951 15073566 15067951 ID=Msa0719670;Name=Msa0719670
chr5_1 mRNA 15067951 15073566 15067951 ID=Msa0719670-mRNA-1;Parent=Msa0719670;Name=Msa0719670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0.5|0.42|7|0|640
chr5_1 exon 15073344 15073566 15073344 ID=Msa0719670-mRNA-1:exon:5840;Parent=Msa0719670-mRNA-1
chr5_1 exon 15073013 15073258 15073013 ID=Msa0719670-mRNA-1:exon:5839;Parent=Msa0719670-mRNA-1
chr5_1 exon 15072767 15072988 15072767 ID=Msa0719670-mRNA-1:exon:5838;Parent=Msa0719670-mRNA-1
chr5_1 exon 15072427 15072669 15072427 ID=Msa0719670-mRNA-1:exon:5837;Parent=Msa0719670-mRNA-1
chr5_1 exon 15069301 15069457 15069301 ID=Msa0719670-mRNA-1:exon:5836;Parent=Msa0719670-mRNA-1
chr5_1 exon 15069027 15069246 15069027 ID=Msa0719670-mRNA-1:exon:5835;Parent=Msa0719670-mRNA-1
chr5_1 exon 15067951 15068562 15067951 ID=Msa0719670-mRNA-1:exon:5834;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15073344 15073566 15073344 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15073013 15073258 15073013 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15072767 15072988 15072767 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15072427 15072669 15072427 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15069301 15069457 15069301 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15069027 15069246 15069027 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
chr5_1 CDS 15067951 15068562 15067951 ID=Msa0719670-mRNA-1:cds;Parent=Msa0719670-mRNA-1
Gene Sequence

>Msa0719670

ATGTTAGGGCAAGGCCTTCTAGGCTTTATCCAGACTGTTTCAGAATTTGAAACTGATGCATCATGGAAAATAAAGGACGTGAAAGCTTTGCATATCATTCAACTATCATGTGGAAGAGAGATTGCTGATGAGATTAGTCATTTTAAAACAGCCAAAAGCGCCTGGAATCATTTAGGCTCATTATATGGCAAAGATTTAACAGCCGGTGCAGATCATGAACAAGATGTGGATGATAGCCACTCTCCAAAGAATAAAGAATTGTTCTGGAAGGTGATGAGAGGTACGCCTATTGGAAATATCGGTATGGACTCGAATGTATATATGACATCGGCTTCCAGGTCTTCGCTTCTTCATGCTGCAGTAATTGCTGGAAATGTGGAAAATGTGGAATTGTTGGTGAAAGTAGGGAAAGACACGTTAATATGCATGCAAGACGAACACGGTGACACAGCTCTTGCGCTTGTTGCACCAAAGTGCATGGTAGAGGAAATAAAGGGACTCCCAGAAACGTTGCTAGAAAAGGAGAACAATGACAATGTAATCCCTATTCTTCTAGCTGCCGCTAATGGACACAAAGAATTGACTTCCTATCTTTACTCCAAAACCCCCACCAAATCCAAAGTGTTTGACAAATCCAATTCACAGAATCGAGTTTTGCTTCTTTCACTATGTATCACTGCTGAGATATTTGATGTGGCTTTGAGATTACTCAGACGTTTCAAAGATCTGCCCGAGCAATCATTATCAATATATAACTTCTCCGTCCCTACGTTGTTAAGGGAATCATTATCACTACCTAGCAAAATCTCAGAATCAGATCCTCTCCAGCAATCCTTACCTGATAAATTCTCGGCCTTAGTTGCATTGGCTAAAATGCCTACATCTTTTCCAAGTGGCACCCGATTGGGATTTCTAGGCCAAATTATTTATGAAAGAATCAGGAAGATATATGATCAGAAATACACACATTATGAAGTTATAGGAATATTGAGTTACTTCTGCCGAAGTGTTGGAAAATTTAATAGTTCCAAGCTCAAAGAGGCTTCTGCATATGAAGCAATGTTGCATGCATCCCAACACGGAATAATCGACTGCCATAGAGGCATATTTTCGTATGCAATCTTGCATCGCAAACAAAATGTGTTTCAACTCATACATTCTGTCAATGGACGGAAGGAGATACTTAGACATCGTATAGACTCGTTTGGCAATAACTTGTTGCACCTGGCAGCACATTTAGGTCCTTCATCTGATCGTCATAGCAGATCCGGTGCTGCTCTGCAAATGCAAAGAGAGTTTCAATGGTTTAAGGCGGTTGAGAAAGTTTTACATCCCAAGTTTAAGGAAGCCGAAAATGATGATGGTAAGAAGCCTTATGAGATATTCATTGAAAGCCATGAGGAGCTAGTGAAAGATGGAGAGAAATGGGCAAAAGACACAGCAACATCTTATACAATTGTAGGTACTCTCATCACCACCATCATGTTTGCTGCAGCCTTTACAGTTCCAGGTGGAAACGACGACAAAACTGGTTTGCCCATCTTCTTACATGACAACATATTCACTGCATTTCTCATGGCAGACGCAGTATCTCTCTTCGCATCTGCGACTTCCGTCTTGATTTTCATTGGTATACTCACATCGCGTTATGCTGAGAAAGACTTTCTCAAGAGCTTGCCTTGGAAGTTATTGTTTGGTCTTTTGCTCCTTTTTCTCTCTGTTTGTTCTATGATAGTTGCATTTAGCGCTGCCATTATCGACATGATCTTAAAGGGATATGAAACCCATAAGTGGTTCATTGTAGTACCAATCATGGCACTTGGGAGTATTCCGATTATCGTTCTTGTAATATCACAGGTGAGCTTCATGTATGAAATCTTCCGCTCAACATGGAAAAATCCCATCCGTTCAATAAACAAATGA
Protein sequence

>Msa0719670

MLGQGLLGFIQTVSEFETDASWKIKDVKALHIIQLSCGREIADEISHFKTAKSAWNHLGSLYGKDLTAGADHEQDVDDSHSPKNKELFWKVMRGTPIGNIGMDSNVYMTSASRSSLLHAAVIAGNVENVELLVKVGKDTLICMQDEHGDTALALVAPKCMVEEIKGLPETLLEKENNDNVIPILLAAANGHKELTSYLYSKTPTKSKVFDKSNSQNRVLLLSLCITAEIFDVALRLLRRFKDLPEQSLSIYNFSVPTLLRESLSLPSKISESDPLQQSLPDKFSALVALAKMPTSFPSGTRLGFLGQIIYERIRKIYDQKYTHYEVIGILSYFCRSVGKFNSSKLKEASAYEAMLHASQHGIIDCHRGIFSYAILHRKQNVFQLIHSVNGRKEILRHRIDSFGNNLLHLAAHLGPSSDRHSRSGAALQMQREFQWFKAVEKVLHPKFKEAENDDGKKPYEIFIESHEELVKDGEKWAKDTATSYTIVGTLITTIMFAAAFTVPGGNDDKTGLPIFLHDNIFTAFLMADAVSLFASATSVLIFIGILTSRYAEKDFLKSLPWKLLFGLLLLFLSVCSMIVAFSAAIIDMILKGYETHKWFIVVPIMALGSIPIIVLVISQVSFMYEIFRSTWKNPIRSINK*