AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841210 MtrunA17_Chr5g0410461 93.931 346 3 1 310 637 127 472 0.0 662
Msa0841210 MtrunA17_Chr5g0410171 45.578 735 255 17 1 627 34 731 0.0 548
Msa0841210 MtrunA17_Chr5g0410341 45.556 720 291 16 1 627 32 743 0.0 538
Msa0841210 MtrunA17_Chr5g0410371 74.587 303 58 2 351 635 1 302 1.79e-153 444
Msa0841210 MtrunA17_Chr5g0410471 90.187 214 10 2 3 205 105 318 1.15e-129 384
Msa0841210 MtrunA17_Chr5g0410201 59.271 329 109 4 319 627 2 325 2.46e-129 384
Msa0841210 MtrunA17_Chr5g0410271 58.232 328 112 4 320 627 2 324 2.08e-126 376
Msa0841210 MtrunA17_Chr6g0457101 39.207 681 293 19 20 626 51 684 7.37e-124 382
Msa0841210 MtrunA17_Chr6g0456101 40.441 680 318 23 20 623 66 734 1.55e-120 375
Msa0841210 MtrunA17_Chr5g0410581 53.644 343 138 4 311 633 459 800 6.45e-112 354
Msa0841210 MtrunA17_Chr5g0410581 45.631 309 128 11 4 295 77 362 2.75e-57 207
Msa0841210 MtrunA17_Chr6g0456141 52.252 333 134 6 310 623 51 377 8.04e-107 328
Msa0841210 MtrunA17_Chr5g0410381 65.021 243 68 4 77 308 6 242 1.76e-92 286
Msa0841210 MtrunA17_Chr5g0410191 58.763 194 75 2 434 627 2 190 9.79e-75 238
Msa0841210 MtrunA17_Chr5g0410451 57.561 205 85 2 432 635 39 242 4.05e-74 238
Msa0841210 MtrunA17_Chr5g0410411 54.622 238 89 6 4 227 73 305 1.11e-69 229
Msa0841210 MtrunA17_Chr5g0410541 55.556 216 88 4 419 633 13 221 5.94e-69 223
Msa0841210 MtrunA17_Chr2g0297701 32.523 535 297 14 114 628 80 570 4.66e-64 221
Msa0841210 MtrunA17_Chr5g0443001 29.791 574 305 13 117 630 69 604 9.20e-59 207
Msa0841210 MtrunA17_Chr2g0297691 30.612 539 307 14 115 628 196 692 2.01e-57 206
Msa0841210 MtrunA17_Chr2g0297681 30.387 543 303 15 115 628 194 690 1.50e-56 203
Msa0841210 MtrunA17_Chr2g0297491 41.111 270 153 4 360 628 114 378 6.27e-56 194
Msa0841210 MtrunA17_Chr5g0410561 50.459 218 89 7 24 227 1 213 6.09e-55 186
Msa0841210 MtrunA17_Chr2g0297651 30.112 538 310 15 115 628 196 691 1.77e-51 189
Msa0841210 MtrunA17_Chr3g0100741 27.462 528 330 12 117 610 71 579 8.41e-51 185
Msa0841210 MtrunA17_Chr2g0297481 30.871 528 276 18 135 629 4 475 1.12e-50 183
Msa0841210 MtrunA17_Chr3g0100301 30.162 431 218 10 189 612 40 394 3.24e-50 179
Msa0841210 MtrunA17_Chr5g0410511 46.078 204 108 2 434 636 2 204 8.35e-50 172
Msa0841210 MtrunA17_Chr2g0297711 37.037 270 163 3 361 628 263 527 1.95e-47 175
Msa0841210 MtrunA17_Chr3g0096941 27.011 522 339 12 117 609 71 579 3.11e-44 167
Msa0841210 MtrunA17_Chr2g0286601 34.296 277 169 3 351 623 408 675 1.07e-42 164
Msa0841210 MtrunA17_Chr5g0410181 56.618 136 54 2 492 627 1 131 3.74e-42 149
Msa0841210 MtrunA17_Chr5g0410211 44.292 219 83 7 103 308 5 197 1.13e-40 147
Msa0841210 MtrunA17_Chr5g0410291 44.292 219 78 8 103 308 5 192 2.37e-38 141
Msa0841210 MtrunA17_Chr2g0286551 35.740 277 163 5 363 634 400 666 9.36e-38 149
Msa0841210 MtrunA17_Chr3g0098481 32.500 240 157 3 392 629 97 333 3.10e-36 139
Msa0841210 MtrunA17_Chr2g0284501 37.452 259 141 6 364 611 400 648 7.56e-35 140
Msa0841210 MtrunA17_Chr5g0410501 46.479 142 57 2 311 433 147 288 2.26e-32 127
Msa0841210 MtrunA17_Chr3g0102001 37.500 232 137 3 396 626 510 734 1.42e-31 130
Msa0841210 MtrunA17_Chr2g0286561 34.031 191 122 1 433 623 14 200 4.00e-31 121
Msa0841210 MtrunA17_Chr2g0284541 39.189 222 125 4 364 583 384 597 2.72e-29 123
Msa0841210 MtrunA17_Chr3g0098301 29.210 291 177 8 350 616 101 386 4.78e-29 119
Msa0841210 MtrunA17_Chr5g0410441 56.522 92 36 2 362 449 15 106 6.19e-28 108
Msa0841210 MtrunA17_Chr5g0439061 32.895 228 148 2 396 623 504 726 1.63e-27 118
Msa0841210 MtrunA17_Chr3g0098531 27.801 241 170 3 390 629 48 285 7.59e-27 111
Msa0841210 MtrunA17_Chr5g0439081 31.604 212 133 4 430 636 8 212 3.81e-25 103
Msa0841210 MtrunA17_Chr5g0410551 46.667 105 37 2 351 436 1 105 4.66e-22 92.0
Msa0841210 MtrunA17_Chr5g0439051 34.211 190 119 3 438 626 23 207 1.20e-21 94.0
Msa0841210 MtrunA17_Chr1g0211541 28.455 246 154 4 349 574 217 460 5.16e-20 94.0
Msa0841210 MtrunA17_Chr6g0456151 32.895 228 126 8 20 227 66 286 1.03e-18 87.0
Msa0841210 MtrunA17_Chr1g0211531 28.090 267 164 7 342 583 231 494 2.16e-16 82.8
Msa0841210 MtrunA17_Chr1g0211511 26.400 250 162 5 342 571 8 255 5.98e-15 76.6
Msa0841210 MtrunA17_Chr3g0100921 40.000 100 60 0 483 582 2 101 1.34e-14 71.2
Msa0841210 MtrunA17_Chr2g0297521 41.176 85 49 1 426 510 1 84 6.21e-14 67.8
Msa0841210 MtrunA17_Chr2g0297611 37.805 82 50 1 449 530 10 90 3.90e-12 62.8
Msa0841210 MtrunA17_Chr5g0410251 43.038 79 40 1 1 74 30 108 9.19e-12 62.4
Msa0841210 MtrunA17_Chr6g0455841 28.571 196 110 8 363 556 18 185 3.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841210 AT3G18670.1 35.466 547 268 13 117 628 88 584 2.46e-97 310
Msa0841210 AT3G18670.2 33.784 592 272 13 117 628 88 639 1.36e-95 308
Msa0841210 AT5G04700.1 33.204 515 254 13 168 628 178 656 2.78e-69 238
Msa0841210 AT5G04730.1 32.703 529 285 15 148 628 84 589 4.77e-69 236
Msa0841210 AT5G04690.1 32.681 511 280 12 141 628 143 612 2.81e-66 229
Msa0841210 AT5G04690.2 31.734 542 278 12 141 628 143 646 1.07e-65 228
Msa0841210 AT5G04690.3 31.181 542 267 13 141 628 143 632 5.41e-63 220
Msa0841210 AT5G04680.2 30.948 559 273 15 141 628 12 528 2.30e-62 216
Msa0841210 AT5G04680.4 30.065 612 282 18 85 628 118 651 1.62e-61 217
Msa0841210 AT5G04680.1 30.882 612 306 19 85 628 118 680 7.33e-59 210
Msa0841210 AT5G04680.3 29.902 612 269 20 85 628 118 637 1.21e-58 208
Msa0841210 AT5G35810.1 38.235 272 158 6 363 628 65 332 4.63e-55 191
Msa0841210 AT3G54065.1 43.694 222 107 5 420 635 8 217 1.60e-48 170

Find 131 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACTTTCATAAATAATT+TGG 0.159583 5_4:+17290852 None:intergenic
CATTATCGACATGATCTTAA+AGG 0.186021 5_4:-17286523 Msa0841210:CDS
CAGAACAATTCTTTATTCTT+TGG 0.203069 5_4:+17291643 None:intergenic
AAGAGAGTTTCAATGGTTTA+AGG 0.229180 5_4:-17287449 Msa0841210:intron
GTACTACAATGAACCACTTA+TGG 0.252983 5_4:+17286490 None:intergenic
TGTATCACTGCTGAAATATT+TGG 0.253668 5_4:-17291202 Msa0841210:intron
GCTGCAGCCTTTACAGTTCC+AGG 0.264273 5_4:-17286786 Msa0841210:CDS
TAGAACAAACAGAGAGAAAA+AGG 0.268023 5_4:+17286568 None:intergenic
TTTCCCTCTATGAATATGTT+AGG 0.273128 5_4:-17291986 None:intergenic
CAGTCTGGATAACGCCTAAA+AGG 0.301425 5_4:+17291957 None:intergenic
CAAAACTCGATTCTGTGAAT+TGG 0.302690 5_4:+17291237 None:intergenic
AATCATTTAGGCTCATTATA+TGG 0.310793 5_4:-17291806 Msa0841210:CDS
GGCACCCAATTGGGATTTCT+AGG 0.327771 5_4:-17290875 Msa0841210:CDS
TATATATGACATCGGCTTCC+AGG 0.333476 5_4:-17291570 Msa0841210:CDS
GTGCATGGTAGAGGAAATAA+AGG 0.338215 5_4:-17291398 Msa0841210:CDS
TAAATGATTCCAGGCGCTTT+TGG 0.340866 5_4:+17291820 None:intergenic
AATTCGAAACTGATGCTTCA+TGG 0.348970 5_4:-17291928 Msa0841210:CDS
TTGCACCTGGCAGCACATTT+AGG 0.353776 5_4:-17287520 Msa0841210:CDS
ATTCTTCTAGCTGCCGCTAA+TGG 0.360168 5_4:-17291325 Msa0841210:CDS
ATTTATCAGGTAAGGATTGC+TGG 0.365909 5_4:+17290945 None:intergenic
CAAAGAATAAAGAATTGTTC+TGG 0.367690 5_4:-17291642 Msa0841210:CDS
TACTACAATGAACCACTTAT+GGG 0.368135 5_4:+17286491 None:intergenic
CATACGAAAATATGCCTCTA+TGG 0.371634 5_4:+17287644 None:intergenic
TTTGTCAAACACTTTGGATT+TGG 0.373648 5_4:+17291261 None:intergenic
TACACACATTATGAAGTTAT+AGG 0.373654 5_4:-17287832 Msa0841210:CDS
TGATGCTTCATGGAAAATAA+AGG 0.374254 5_4:-17291918 Msa0841210:CDS
ACTAAGGCCGAGAATTTATC+AGG 0.379921 5_4:+17290932 None:intergenic
TTGCCTTGGAAGTTATTGTT+TGG 0.387767 5_4:-17286600 Msa0841210:CDS
CTTTAAGATCATGTCGATAA+TGG 0.388292 5_4:+17286524 None:intergenic
TTTGGCCTAGAAATCCCAAT+TGG 0.395842 5_4:+17290870 None:intergenic
TTTCCAAGTGGCACCCAATT+GGG 0.405636 5_4:-17290884 Msa0841210:CDS
GCAACATCTTATACAATTGT+AGG 0.407639 5_4:-17286834 Msa0841210:CDS
CTTCAATTATGTCAGGAATC+AGG 0.410277 5_4:-17287873 Msa0841210:intron
TTAGCGGCAGCTAGAAGAAT+AGG 0.427359 5_4:+17291328 None:intergenic
GAACTCGATTATTCCGTGTT+GGG 0.428128 5_4:+17287720 None:intergenic
CTTTCAATGAATATCTCATA+AGG 0.433992 5_4:+17286903 None:intergenic
GGTGGAAACGACGACAAAAC+TGG 0.435847 5_4:-17286765 Msa0841210:CDS
ATCCTTACCTGATAAATTCT+CGG 0.437868 5_4:-17290939 Msa0841210:CDS
ATTGGATTTGTCAAACACTT+TGG 0.438556 5_4:+17291255 None:intergenic
TAGTGAAAGATGGAGAGAAA+TGG 0.438852 5_4:-17286869 Msa0841210:CDS
TCAAACACTTTGGATTTGGT+GGG 0.439060 5_4:+17291265 None:intergenic
ATTATCGACATGATCTTAAA+GGG 0.440142 5_4:-17286522 Msa0841210:CDS
GATATTACAAGAACGATAAT+CGG 0.441300 5_4:+17286444 None:intergenic
GTCAAACACTTTGGATTTGG+TGG 0.443427 5_4:+17291264 None:intergenic
TGCAGAAGCCTCTTTGAGCT+TGG 0.447470 5_4:+17287765 None:intergenic
CTCCGTCCCTACGTTGTTGA+GGG 0.447774 5_4:-17291011 Msa0841210:CDS
AAATGCAAAGAGAGTTTCAA+TGG 0.447934 5_4:-17287456 Msa0841210:CDS
CAAACACTTTGGATTTGGTG+GGG 0.451286 5_4:+17291266 None:intergenic
TTTCGAATTCTGAAACAGTC+TGG 0.454616 5_4:+17291942 None:intergenic
TAATGAGCCTAAATGATTCC+AGG 0.455349 5_4:+17291811 None:intergenic
CCCAGAAACGTTGCTAGAAA+AGG 0.455513 5_4:-17291371 Msa0841210:CDS
GTGATGAGAGGTACGCCTAT+TGG 0.457145 5_4:-17291616 Msa0841210:CDS
GGTACGCCTATTGGAAATAT+CGG 0.457767 5_4:-17291607 Msa0841210:CDS
CTTCACGCAGCAGTGATTGC+TGG 0.458933 5_4:-17291538 Msa0841210:CDS
TGCTGGAAATGTGGAATTGT+TGG 0.459771 5_4:-17291521 Msa0841210:CDS
GGCCGAGAATTTATCAGGTA+AGG 0.460680 5_4:+17290937 None:intergenic
CAACTCATACATTCTGTCAA+TGG 0.460886 5_4:-17287592 Msa0841210:CDS
TCATTTGTTTATTGAACGGA+TGG 0.471650 5_4:+17286374 None:intergenic
TTAAAACAGCCAAAAGCGCC+TGG 0.474873 5_4:-17291829 Msa0841210:CDS
AAAAGCGCCTGGAATCATTT+AGG 0.476909 5_4:-17291818 Msa0841210:CDS
ATTCTCGGCCTTAGTTGCAT+TGG 0.477418 5_4:-17290924 Msa0841210:CDS
AGACATCGTATAGACTCGTT+TGG 0.481995 5_4:-17287553 Msa0841210:CDS
AAACACTTTGGATTTGGTGG+GGG 0.483841 5_4:+17291267 None:intergenic
CAATTCTTTGTGTCCATTAG+CGG 0.484696 5_4:+17291312 None:intergenic
TTGCATTTGCAGAGCAGCAC+CGG 0.486301 5_4:+17287471 None:intergenic
TTCCCTCTATGAATATGTTA+GGG 0.490501 5_4:-17291985 None:intergenic
GTCGTCATTTGTTTATTGAA+CGG 0.491644 5_4:+17286370 None:intergenic
TATATTGATAATGATTGCTC+GGG 0.495481 5_4:+17291040 None:intergenic
AGTGAAAGATGGAGAGAAAT+GGG 0.498200 5_4:-17286868 Msa0841210:CDS
ATATATTGATAATGATTGCT+CGG 0.502639 5_4:+17291039 None:intergenic
TGAACTCGATTATTCCGTGT+TGG 0.510589 5_4:+17287719 None:intergenic
AATCCCAATTGGGTGCCACT+TGG 0.512054 5_4:+17290881 None:intergenic
ACTTTCTCAAGAGCTTGCCT+TGG 0.512356 5_4:-17286614 Msa0841210:CDS
ATACTCCCAAGTGCCATGAT+TGG 0.513042 5_4:+17286468 None:intergenic
CATCTTTCACTAGCTCCTCA+TGG 0.514505 5_4:+17286880 None:intergenic
TATGGCAAAGATTTAACAGC+CGG 0.518073 5_4:-17291788 Msa0841210:CDS
TATCGTTCTTGTAATATCAC+AGG 0.519358 5_4:-17286439 Msa0841210:CDS
TAGCGGCAGCTAGAAGAATA+GGG 0.520879 5_4:+17291329 None:intergenic
AGTTACTTCTGCCGAAGTGT+TGG 0.521693 5_4:-17287802 Msa0841210:CDS
AATAGCAAAGTGCATGGTAG+AGG 0.523953 5_4:-17291407 Msa0841210:intron
TATGTTGTCATGTAAGAAGA+TGG 0.525735 5_4:+17286737 None:intergenic
TCTGATCGTCATAGCAGATC+CGG 0.526463 5_4:-17287490 Msa0841210:CDS
TCTCCGTCCCTACGTTGTTG+AGG 0.527493 5_4:-17291012 Msa0841210:CDS
TCAGGTAAGGATTGCTGGAG+AGG 0.527967 5_4:+17290950 None:intergenic
ATTCTTTATTCTTTGGAGAG+TGG 0.532153 5_4:+17291650 None:intergenic
TGGCAATAACTTGTTGCACC+TGG 0.540571 5_4:-17287533 Msa0841210:CDS
CATATTCACTGCATTTCTCA+TGG 0.544524 5_4:-17286718 Msa0841210:CDS
TGGAATTGTTGGTGAAAGTA+GGG 0.547426 5_4:-17291510 Msa0841210:CDS
TCCATACCGATATTTCCAAT+AGG 0.548152 5_4:+17291601 None:intergenic
CATGAGGAGCTAGTGAAAGA+TGG 0.552759 5_4:-17286879 Msa0841210:CDS
TTGGCCTAGAAATCCCAATT+GGG 0.552989 5_4:+17290871 None:intergenic
CTGCTATGACGATCAGATGA+AGG 0.554930 5_4:+17287496 None:intergenic
GTTCATTGTAGTACCAATCA+TGG 0.555376 5_4:-17286481 Msa0841210:CDS
TGCGTGAAGTAGCGAAGACC+TGG 0.560154 5_4:+17291552 None:intergenic
GCCTATTGGAAATATCGGTA+TGG 0.560203 5_4:-17291602 Msa0841210:CDS
ACCTTGTTCATGATCTGCAC+CGG 0.561022 5_4:+17291769 None:intergenic
GTTTCCACCTGGAACTGTAA+AGG 0.563160 5_4:+17286779 None:intergenic
CATTTGTTTATTGAACGGAT+GGG 0.564108 5_4:+17286375 None:intergenic
AGACCAAACAATAACTTCCA+AGG 0.568693 5_4:+17286597 None:intergenic
TAATAGTTCCAAGCTCAAAG+AGG 0.570868 5_4:-17287773 Msa0841210:CDS
GTGCCACTTGGAAAAGATGT+AGG 0.572327 5_4:+17290893 None:intergenic
AAGGAAGCCGAAAATGATGA+TGG 0.573881 5_4:-17286933 Msa0841210:CDS
AGGGATATGAAACCCATAAG+TGG 0.578644 5_4:-17286503 Msa0841210:CDS
GAATAAAGAATTGTTCTGGA+AGG 0.580301 5_4:-17291638 Msa0841210:CDS
GTGGAATTGTTGGTGAAAGT+AGG 0.581941 5_4:-17291511 Msa0841210:CDS
GTAGTACCAATCATGGCACT+TGG 0.582602 5_4:-17286474 Msa0841210:CDS
TGCATGGTAGAGGAAATAAA+GGG 0.582858 5_4:-17291397 Msa0841210:CDS
ATGTTGTCATGTAAGAAGAT+GGG 0.590707 5_4:+17286738 None:intergenic
ATGAAATCTTCCGCTCAACA+TGG 0.593061 5_4:-17286404 Msa0841210:CDS
ATGATTCCCTCAACAACGTA+GGG 0.595992 5_4:+17291005 None:intergenic
CATATCATTCAACTATCATG+TGG 0.604069 5_4:-17291881 Msa0841210:CDS
TACCGAAATAGCAAAGTGCA+TGG 0.611483 5_4:-17291413 Msa0841210:intron
CTCGAATGTATATATGACAT+CGG 0.616856 5_4:-17291578 Msa0841210:CDS
ACATTCTGTCAATGGACGGA+AGG 0.617474 5_4:-17287584 Msa0841210:CDS
TAGTACCAATCATGGCACTT+GGG 0.623895 5_4:-17286473 Msa0841210:CDS
TTCCCTCAACAACGTAGGGA+CGG 0.626973 5_4:+17291009 None:intergenic
AAGGACCTAAATGTGCTGCC+AGG 0.631007 5_4:+17287515 None:intergenic
GCCGTCGATAGCTGCCATAG+AGG 0.633165 5_4:-17287658 Msa0841210:intron
TCATACATTCTGTCAATGGA+CGG 0.635424 5_4:-17287588 Msa0841210:CDS
AATGATTCCCTCAACAACGT+AGG 0.651538 5_4:+17291004 None:intergenic
TCTATGAATATGTTAGGGCA+AGG 0.652204 5_4:-17291980 None:intergenic
AGCAGTGATTGCTGGAAATG+TGG 0.655602 5_4:-17291530 Msa0841210:CDS
TATACCAATGAAAATCAAGA+CGG 0.658060 5_4:+17286662 None:intergenic
ATATGCATGCAAGACGAACA+CGG 0.664176 5_4:-17291475 Msa0841210:CDS
ATGTTGCATGCATCCCAACA+CGG 0.665878 5_4:-17287733 Msa0841210:CDS
TTGTTCTGGAAGGTGATGAG+AGG 0.672631 5_4:-17291628 Msa0841210:CDS
AAAGGCTGCAGCAAACATGA+TGG 0.673254 5_4:+17286797 None:intergenic
GCCGGTGCAGATCATGAACA+AGG 0.680709 5_4:-17291770 Msa0841210:intron
GCAGCCTTTACAGTTCCAGG+TGG 0.696330 5_4:-17286783 Msa0841210:CDS
GGCTGCAGCAAACATGATGG+TGG 0.726270 5_4:+17286800 None:intergenic
GATATTCATTGAAAGCCATG+AGG 0.729208 5_4:-17286895 Msa0841210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATAATATGATACAA+TGG - chr5_4:17288096-17288115 Msa0841210:intron 10.0%
!! ATAAAAAAAAAGATAAGTAA+AGG - chr5_4:17288352-17288371 Msa0841210:intron 10.0%
!! TAAAAAAAAAGATAAGTAAA+GGG - chr5_4:17288353-17288372 Msa0841210:intron 10.0%
!!! TTATCTTTTATAAAAAAAAC+CGG + chr5_4:17288463-17288482 None:intergenic 10.0%
!! AATATTTAACTATCATTATA+TGG + chr5_4:17288604-17288623 None:intergenic 10.0%
!!! AAATATTTTCTTTTTAAAAG+AGG + chr5_4:17288869-17288888 None:intergenic 10.0%
!! TATATTAGTAATTATATTGT+TGG + chr5_4:17290279-17290298 None:intergenic 10.0%
!! AATATAATTACTAATATAGT+TGG - chr5_4:17290281-17290300 Msa0841210:intron 10.0%
!! TTTATAAAATGTAATCTAAA+AGG + chr5_4:17291020-17291039 None:intergenic 10.0%
!!! TAAAAATGAGTTAATTTTTT+TGG - chr5_4:17291153-17291172 Msa0841210:intron 10.0%
!! ACTTACTTTCATAAATAATT+TGG + chr5_4:17287496-17287515 None:intergenic 15.0%
!! ATAGTTTAAATAAAGTTAGA+TGG - chr5_4:17287589-17287608 Msa0841210:CDS 15.0%
!! TATTATCATATTACTAACTT+AGG + chr5_4:17287773-17287792 None:intergenic 15.0%
!! TCAATTAATATAAAAAGAAG+CGG - chr5_4:17287948-17287967 Msa0841210:intron 15.0%
!!! TAAATTTATATTTTTCCTTC+CGG - chr5_4:17288441-17288460 Msa0841210:intron 15.0%
!!! ACTTTTTTATAAGAGAAAAA+TGG + chr5_4:17288551-17288570 None:intergenic 15.0%
!! GTAATAAAATATTTGAATAG+AGG - chr5_4:17288651-17288670 Msa0841210:intron 15.0%
!! TTATTATTAATATGTGATGT+TGG + chr5_4:17289129-17289148 None:intergenic 15.0%
!!! AATTAATGAGTTTTTTTTAC+TGG + chr5_4:17289571-17289590 None:intergenic 15.0%
!!! ATATCAATTGTTATTAGTAT+TGG + chr5_4:17290150-17290169 None:intergenic 15.0%
!! TATACTGTAATTAAATAGAT+TGG + chr5_4:17291316-17291335 None:intergenic 15.0%
!!! GAAACTTTTAAATCAGTTAA+TGG + chr5_4:17286603-17286622 None:intergenic 20.0%
!!! GTATGTTGTTAATTTCTTTT+TGG - chr5_4:17287186-17287205 Msa0841210:intron 20.0%
!!! ATATATTGATAATGATTGCT+CGG + chr5_4:17287309-17287328 None:intergenic 20.0%
!!! TCACACTATTCTTTTTTTAT+TGG - chr5_4:17287518-17287537 Msa0841210:CDS 20.0%
!! TAATCTGAATAGTATCTATT+GGG + chr5_4:17287644-17287663 None:intergenic 20.0%
!! TTAATCTGAATAGTATCTAT+TGG + chr5_4:17287645-17287664 None:intergenic 20.0%
!! CAATTAATATAAAAAGAAGC+GGG - chr5_4:17287949-17287968 Msa0841210:intron 20.0%
!! ATAATATGATACAATGGTTA+TGG - chr5_4:17288102-17288121 Msa0841210:intron 20.0%
!! ATAAAATATTTGAATAGAGG+AGG - chr5_4:17288654-17288673 Msa0841210:intron 20.0%
!! TTAAAAGAGGTTTATTCAAA+TGG + chr5_4:17288856-17288875 None:intergenic 20.0%
!! CCATTTATATATATTCATGT+GGG + chr5_4:17289213-17289232 None:intergenic 20.0%
!! TTTCAAATATGTGATGAATT+AGG - chr5_4:17289602-17289621 Msa0841210:intron 20.0%
!! TTCAAATATGTGATGAATTA+GGG - chr5_4:17289603-17289622 Msa0841210:intron 20.0%
!! TTGTATATACGATCAAATAT+TGG - chr5_4:17290004-17290023 Msa0841210:intron 20.0%
!!! AAATATGGTTCAATATTTTG+CGG + chr5_4:17290242-17290261 None:intergenic 20.0%
!! TTAGTAATTATATTGTTGGA+GGG + chr5_4:17290275-17290294 None:intergenic 20.0%
!! ATTAGTAATTATATTGTTGG+AGG + chr5_4:17290276-17290295 None:intergenic 20.0%
!!! TGTCTTAGCATTTAAAATAT+TGG - chr5_4:17290325-17290344 Msa0841210:intron 20.0%
!!! TATTAAATTTTCCAACACTT+CGG + chr5_4:17290557-17290576 None:intergenic 20.0%
!! TGAAGACAATTAATTTAGAT+GGG + chr5_4:17290925-17290944 None:intergenic 20.0%
!! TTGAAGACAATTAATTTAGA+TGG + chr5_4:17290926-17290945 None:intergenic 20.0%
! AATCATTTAGGCTCATTATA+TGG - chr5_4:17286539-17286558 Msa0841210:CDS 25.0%
! ATCAAACTCTTGAATGATAA+TGG - chr5_4:17286656-17286675 Msa0841210:CDS 25.0%
! CAGAACAATTCTTTATTCTT+TGG + chr5_4:17286705-17286724 None:intergenic 25.0%
! CAAAGAATAAAGAATTGTTC+TGG - chr5_4:17286703-17286722 Msa0841210:CDS 25.0%
!!! ACTTGTTTTATTCAAATGTG+TGG - chr5_4:17287223-17287242 Msa0841210:intron 25.0%
!!! TATATTGATAATGATTGCTC+GGG + chr5_4:17287308-17287327 None:intergenic 25.0%
!!! ATTCTTTTTTTATTGGTACC+AGG - chr5_4:17287525-17287544 Msa0841210:CDS 25.0%
! CAATATGTATTTCAGAGTAT+TGG + chr5_4:17287559-17287578 None:intergenic 25.0%
! TGATAATAACGAATTGATGA+TGG - chr5_4:17287785-17287804 Msa0841210:CDS 25.0%
!! TATGGTGATTTGTACATTTA+TGG - chr5_4:17288120-17288139 Msa0841210:intron 25.0%
! TAAGTTATTTAAAAAGGACG+TGG - chr5_4:17288151-17288170 Msa0841210:intron 25.0%
! GTGGAACAAATATAAGAAAA+AGG - chr5_4:17288170-17288189 Msa0841210:intron 25.0%
!! ATTTTAAATGATCATCGTCA+TGG + chr5_4:17288393-17288412 None:intergenic 25.0%
!! CTTTTATAAAAAAAACCGGA+AGG + chr5_4:17288459-17288478 None:intergenic 25.0%
!!! TCTTATAAAAAAGTACCGAA+AGG - chr5_4:17288557-17288576 Msa0841210:intron 25.0%
! TTAAAGCAAAACTAAATCCA+AGG - chr5_4:17288774-17288793 Msa0841210:intron 25.0%
! TAAAGCAAAACTAAATCCAA+GGG - chr5_4:17288775-17288794 Msa0841210:intron 25.0%
! TTCAAATGGAGAAAGATAAA+TGG + chr5_4:17288842-17288861 None:intergenic 25.0%
! CCCACATGAATATATATAAA+TGG - chr5_4:17289210-17289229 Msa0841210:intron 25.0%
! GCCATTTATATATATTCATG+TGG + chr5_4:17289214-17289233 None:intergenic 25.0%
!! TGATATCGATATTTCTCTTT+TGG - chr5_4:17289272-17289291 Msa0841210:intron 25.0%
!! ATCACATATTTGAAATGTGA+GGG + chr5_4:17289597-17289616 None:intergenic 25.0%
! TCAAATATGTGATGAATTAG+GGG - chr5_4:17289604-17289623 Msa0841210:intron 25.0%
!!! TTCTTTTTTCAAAGAAACGA+GGG + chr5_4:17289707-17289726 None:intergenic 25.0%
! CAATTCGAATTAAGCATATA+AGG + chr5_4:17290418-17290437 None:intergenic 25.0%
! TACACACATTATGAAGTTAT+AGG - chr5_4:17290513-17290532 Msa0841210:intron 25.0%
!! CTATACCATGTTTTGTAAAA+TGG + chr5_4:17290991-17291010 None:intergenic 25.0%
!! CATTTTACAAAACATGGTAT+AGG - chr5_4:17290989-17291008 Msa0841210:CDS 25.0%
! GTGTTTCAACAACATTTATT+AGG + chr5_4:17291059-17291078 None:intergenic 25.0%
!!! ATTTTAGAGTACTGAACATA+TGG + chr5_4:17291081-17291100 None:intergenic 25.0%
! ACTTATATTTCGTAACAGAA+GGG + chr5_4:17291134-17291153 None:intergenic 25.0%
! TACTTATATTTCGTAACAGA+AGG + chr5_4:17291135-17291154 None:intergenic 25.0%
! TAACGAAAGTTTGATGTATT+TGG + chr5_4:17291180-17291199 None:intergenic 25.0%
! AACGAAATATAAGCAAAAGT+TGG + chr5_4:17291204-17291223 None:intergenic 25.0%
! ACTGTAATTAAATAGATTGG+TGG + chr5_4:17291313-17291332 None:intergenic 25.0%
! CTTTCAATGAATATCTCATA+AGG + chr5_4:17291445-17291464 None:intergenic 25.0%
! TATACCAATGAAAATCAAGA+CGG + chr5_4:17291686-17291705 None:intergenic 25.0%
! ATTATCGACATGATCTTAAA+GGG - chr5_4:17291823-17291842 Msa0841210:CDS 25.0%
! GATATTACAAGAACGATAAT+CGG + chr5_4:17291904-17291923 None:intergenic 25.0%
TGATGCTTCATGGAAAATAA+AGG - chr5_4:17286427-17286446 Msa0841210:CDS 30.0%
CATATCATTCAACTATCATG+TGG - chr5_4:17286464-17286483 Msa0841210:CDS 30.0%
TATCATTCAAGAGTTTGATG+AGG + chr5_4:17286655-17286674 None:intergenic 30.0%
! ATTCTTTATTCTTTGGAGAG+TGG + chr5_4:17286698-17286717 None:intergenic 30.0%
! GAATAAAGAATTGTTCTGGA+AGG - chr5_4:17286707-17286726 Msa0841210:CDS 30.0%
CTCGAATGTATATATGACAT+CGG - chr5_4:17286767-17286786 Msa0841210:CDS 30.0%
TTTGTCAAACACTTTGGATT+TGG + chr5_4:17287087-17287106 None:intergenic 30.0%
ATTGGATTTGTCAAACACTT+TGG + chr5_4:17287093-17287112 None:intergenic 30.0%
TGTATCACTGCTGAAATATT+TGG - chr5_4:17287143-17287162 Msa0841210:intron 30.0%
! TCTGATTCTGATATTTTGCT+AGG + chr5_4:17287374-17287393 None:intergenic 30.0%
ATCCTTACCTGATAAATTCT+CGG - chr5_4:17287406-17287425 Msa0841210:intron 30.0%
! TATCTCTTTGAGTTAAAACG+TGG - chr5_4:17287713-17287732 Msa0841210:intron 30.0%
! ATCTCTTTGAGTTAAAACGT+GGG - chr5_4:17287714-17287733 Msa0841210:intron 30.0%
TCATCAAATGATGAATCGTT+CGG - chr5_4:17288228-17288247 Msa0841210:intron 30.0%
! CACTAATGTTGATAAAGAAC+TGG + chr5_4:17288419-17288438 None:intergenic 30.0%
ATCTACATATACTCTCCTTT+CGG + chr5_4:17288575-17288594 None:intergenic 30.0%
!!! GGATTTAGTTTTGCTTTAAG+TGG + chr5_4:17288773-17288792 None:intergenic 30.0%
AGTATGATATTGCCGAAATT+GGG - chr5_4:17288939-17288958 Msa0841210:intron 30.0%
CGTTGTTCTAATAATGCTTT+CGG - chr5_4:17289066-17289085 Msa0841210:intron 30.0%
GTTGTTCTAATAATGCTTTC+GGG - chr5_4:17289067-17289086 Msa0841210:intron 30.0%
!! TCATAAAAGTACCGGTTAAA+AGG + chr5_4:17289161-17289180 None:intergenic 30.0%
! AACTTGTGTCATAAAAGTAC+CGG + chr5_4:17289169-17289188 None:intergenic 30.0%
TCATGTGGGTAATAAAAAAC+AGG + chr5_4:17289199-17289218 None:intergenic 30.0%
!! ATGGCTCAAAGCTTTTATTT+AGG - chr5_4:17289229-17289248 Msa0841210:intron 30.0%
!! CTCAAAGCTTTTATTTAGGT+TGG - chr5_4:17289233-17289252 Msa0841210:intron 30.0%
!!! CTGATTTTGTTGATTTGTTC+AGG - chr5_4:17289426-17289445 Msa0841210:intron 30.0%
TTCCATTACCTAGATAGTAA+TGG - chr5_4:17289501-17289520 Msa0841210:intron 30.0%
TACCATTACTATCTAGGTAA+TGG + chr5_4:17289506-17289525 None:intergenic 30.0%
TTTACGTACCATTACTATCT+AGG + chr5_4:17289512-17289531 None:intergenic 30.0%
! CATCACATATTTGAAATGTG+AGG + chr5_4:17289598-17289617 None:intergenic 30.0%
!!! TCTTTTTTCAAAGAAACGAG+GGG + chr5_4:17289706-17289725 None:intergenic 30.0%
!!! GTTCTTTTTTCAAAGAAACG+AGG + chr5_4:17289708-17289727 None:intergenic 30.0%
ATTCAAAAAACGTGTTAGCA+TGG - chr5_4:17289869-17289888 Msa0841210:intron 30.0%
TCATGATGTGATTTATGAGT+CGG + chr5_4:17289901-17289920 None:intergenic 30.0%
! ACATGTTTTCCTACTGATAT+AGG + chr5_4:17290092-17290111 None:intergenic 30.0%
GAGGGATTATGTTTCAAATA+TGG + chr5_4:17290257-17290276 None:intergenic 30.0%
TGATTCCTGACATAATTGAA+GGG + chr5_4:17290473-17290492 None:intergenic 30.0%
AAATGCAAAGAGAGTTTCAA+TGG - chr5_4:17290889-17290908 Msa0841210:CDS 30.0%
AAGAGAGTTTCAATGGTTTA+AGG - chr5_4:17290896-17290915 Msa0841210:CDS 30.0%
AATTACACTCCAACAGTATT+AGG - chr5_4:17291098-17291117 Msa0841210:intron 30.0%
CTTATATTTCGTAACAGAAG+GGG + chr5_4:17291133-17291152 None:intergenic 30.0%
ATGTTGAAACACATGATTCT+TGG + chr5_4:17291256-17291275 None:intergenic 30.0%
AATAGATTGGTGGAATTATG+TGG + chr5_4:17291303-17291322 None:intergenic 30.0%
! AGTTTTACATCCCAAGTTTA+AGG - chr5_4:17291393-17291412 Msa0841210:CDS 30.0%
! CTTCTTACCATCATCATTTT+CGG + chr5_4:17291422-17291441 None:intergenic 30.0%
GCAACATCTTATACAATTGT+AGG - chr5_4:17291511-17291530 Msa0841210:CDS 30.0%
ATGTTGTCATGTAAGAAGAT+GGG + chr5_4:17291610-17291629 None:intergenic 30.0%
TATGTTGTCATGTAAGAAGA+TGG + chr5_4:17291611-17291630 None:intergenic 30.0%
TAGAACAAACAGAGAGAAAA+AGG + chr5_4:17291780-17291799 None:intergenic 30.0%
!! CTTTAAGATCATGTCGATAA+TGG + chr5_4:17291824-17291843 None:intergenic 30.0%
CATTATCGACATGATCTTAA+AGG - chr5_4:17291822-17291841 Msa0841210:CDS 30.0%
TACTACAATGAACCACTTAT+GGG + chr5_4:17291857-17291876 None:intergenic 30.0%
TATCGTTCTTGTAATATCAC+AGG - chr5_4:17291906-17291925 Msa0841210:CDS 30.0%
CATTTGTTTATTGAACGGAT+GGG + chr5_4:17291973-17291992 None:intergenic 30.0%
TCATTTGTTTATTGAACGGA+TGG + chr5_4:17291974-17291993 None:intergenic 30.0%
!! TTTCGAATTCTGAAACAGTC+TGG + chr5_4:17286406-17286425 None:intergenic 35.0%
AATTCGAAACTGATGCTTCA+TGG - chr5_4:17286417-17286436 Msa0841210:CDS 35.0%
TAATGAGCCTAAATGATTCC+AGG + chr5_4:17286537-17286556 None:intergenic 35.0%
TATGGCAAAGATTTAACAGC+CGG - chr5_4:17286557-17286576 Msa0841210:CDS 35.0%
!! TTGAATGATAATGGCAGATG+TGG - chr5_4:17286665-17286684 Msa0841210:CDS 35.0%
TCCATACCGATATTTCCAAT+AGG + chr5_4:17286747-17286766 None:intergenic 35.0%
! TGGAATTGTTGGTGAAAGTA+GGG - chr5_4:17286835-17286854 Msa0841210:CDS 35.0%
!! TACCATGCACTTTGCTATTT+CGG + chr5_4:17286937-17286956 None:intergenic 35.0%
TGCATGGTAGAGGAAATAAA+GGG - chr5_4:17286948-17286967 Msa0841210:CDS 35.0%
CAATTCTTTGTGTCCATTAG+CGG + chr5_4:17287036-17287055 None:intergenic 35.0%
! TCAAACACTTTGGATTTGGT+GGG + chr5_4:17287083-17287102 None:intergenic 35.0%
CAAAACTCGATTCTGTGAAT+TGG + chr5_4:17287111-17287130 None:intergenic 35.0%
ATTTGATCCATGATCAGATG+TGG - chr5_4:17287250-17287269 Msa0841210:intron 35.0%
ATTTATCAGGTAAGGATTGC+TGG + chr5_4:17287403-17287422 None:intergenic 35.0%
! CATTTTTGCCAATGCAACTA+AGG + chr5_4:17287432-17287451 None:intergenic 35.0%
! GTTGTGAGTTTTTACGGTTT+TGG - chr5_4:17287971-17287990 Msa0841210:intron 35.0%
!!! TTTTTACGGTTTTGGTGATG+TGG - chr5_4:17287979-17287998 Msa0841210:intron 35.0%
TGGTGCAATTACTGAGATTA+TGG - chr5_4:17287999-17288018 Msa0841210:intron 35.0%
GGTGCAATTACTGAGATTAT+GGG - chr5_4:17288000-17288019 Msa0841210:intron 35.0%
CAATTACTGAGATTATGGGT+GGG - chr5_4:17288004-17288023 Msa0841210:intron 35.0%
AATTACTGAGATTATGGGTG+GGG - chr5_4:17288005-17288024 Msa0841210:intron 35.0%
CATCAAATGATGAATCGTTC+GGG - chr5_4:17288229-17288248 Msa0841210:intron 35.0%
! AACCAAACTACCGATTACTA+GGG - chr5_4:17288293-17288312 Msa0841210:intron 35.0%
TTGTTAATCCTTTAGATCCC+AGG + chr5_4:17288330-17288349 None:intergenic 35.0%
GAGTATGATATTGCCGAAAT+TGG - chr5_4:17288938-17288957 Msa0841210:intron 35.0%
! AAAGACCTATGCCTTTTAAC+CGG - chr5_4:17289147-17289166 Msa0841210:intron 35.0%
! TTTTGGCCAGTAAAGCTTTT+GGG - chr5_4:17289289-17289308 Msa0841210:intron 35.0%
CTACTTTGTAAGATATTCCG+TGG - chr5_4:17289453-17289472 Msa0841210:intron 35.0%
TAACAACTCCAAGACTGATT+AGG - chr5_4:17290446-17290465 Msa0841210:intron 35.0%
CTGATTCCTGACATAATTGA+AGG + chr5_4:17290474-17290493 None:intergenic 35.0%
CTTCAATTATGTCAGGAATC+AGG - chr5_4:17290472-17290491 Msa0841210:intron 35.0%
TAATAGTTCCAAGCTCAAAG+AGG - chr5_4:17290572-17290591 Msa0841210:intron 35.0%
CATACGAAAATATGCCTCTA+TGG + chr5_4:17290704-17290723 None:intergenic 35.0%
CAACTCATACATTCTGTCAA+TGG - chr5_4:17290753-17290772 Msa0841210:intron 35.0%
TCATACATTCTGTCAATGGA+CGG - chr5_4:17290757-17290776 Msa0841210:intron 35.0%
!! TCAACGTATACTAGCTTTGT+TGG - chr5_4:17290965-17290984 Msa0841210:CDS 35.0%
!! GTTGGCCATTTTACAAAACA+TGG - chr5_4:17290983-17291002 Msa0841210:CDS 35.0%
TGTTTCGTACCTAATACTGT+TGG + chr5_4:17291110-17291129 None:intergenic 35.0%
! TTGGTGGAATTATGTGGTTT+TGG + chr5_4:17291297-17291316 None:intergenic 35.0%
! TTTTCGGCTTCCTTAAACTT+GGG + chr5_4:17291406-17291425 None:intergenic 35.0%
! ATTTTCGGCTTCCTTAAACT+TGG + chr5_4:17291407-17291426 None:intergenic 35.0%
GATATTCATTGAAAGCCATG+AGG - chr5_4:17291450-17291469 Msa0841210:CDS 35.0%
TAGTGAAAGATGGAGAGAAA+TGG - chr5_4:17291476-17291495 Msa0841210:CDS 35.0%
AGTGAAAGATGGAGAGAAAT+GGG - chr5_4:17291477-17291496 Msa0841210:CDS 35.0%
CATATTCACTGCATTTCTCA+TGG - chr5_4:17291627-17291646 Msa0841210:CDS 35.0%
! ACTTCCGTCTTGATTTTCAT+TGG - chr5_4:17291679-17291698 Msa0841210:intron 35.0%
TTGCCTTGGAAGTTATTGTT+TGG - chr5_4:17291745-17291764 Msa0841210:intron 35.0%
AGACCAAACAATAACTTCCA+AGG + chr5_4:17291751-17291770 None:intergenic 35.0%
GTACTACAATGAACCACTTA+TGG + chr5_4:17291858-17291877 None:intergenic 35.0%
GTTCATTGTAGTACCAATCA+TGG - chr5_4:17291864-17291883 Msa0841210:CDS 35.0%
! TAAATGATTCCAGGCGCTTT+TGG + chr5_4:17286528-17286547 None:intergenic 40.0%
!! AAAAGCGCCTGGAATCATTT+AGG - chr5_4:17286527-17286546 Msa0841210:CDS 40.0%
GGTACGCCTATTGGAAATAT+CGG - chr5_4:17286738-17286757 Msa0841210:CDS 40.0%
GCCTATTGGAAATATCGGTA+TGG - chr5_4:17286743-17286762 Msa0841210:CDS 40.0%
!! TATATATGACATCGGCTTCC+AGG - chr5_4:17286775-17286794 Msa0841210:CDS 40.0%
TGCTGGAAATGTGGAATTGT+TGG - chr5_4:17286824-17286843 Msa0841210:CDS 40.0%
! GTGGAATTGTTGGTGAAAGT+AGG - chr5_4:17286834-17286853 Msa0841210:CDS 40.0%
ATATGCATGCAAGACGAACA+CGG - chr5_4:17286870-17286889 Msa0841210:CDS 40.0%
TACCGAAATAGCAAAGTGCA+TGG - chr5_4:17286932-17286951 Msa0841210:CDS 40.0%
AATAGCAAAGTGCATGGTAG+AGG - chr5_4:17286938-17286957 Msa0841210:CDS 40.0%
GTGCATGGTAGAGGAAATAA+AGG - chr5_4:17286947-17286966 Msa0841210:CDS 40.0%
!! CCTTTTCTAGCAACGTTTCT+GGG + chr5_4:17286977-17286996 None:intergenic 40.0%
!! TCCTTTTCTAGCAACGTTTC+TGG + chr5_4:17286978-17286997 None:intergenic 40.0%
!! AAACACTTTGGATTTGGTGG+GGG + chr5_4:17287081-17287100 None:intergenic 40.0%
!! CAAACACTTTGGATTTGGTG+GGG + chr5_4:17287082-17287101 None:intergenic 40.0%
GTCAAACACTTTGGATTTGG+TGG + chr5_4:17287084-17287103 None:intergenic 40.0%
ATGATTCCCTCAACAACGTA+GGG + chr5_4:17287343-17287362 None:intergenic 40.0%
AATGATTCCCTCAACAACGT+AGG + chr5_4:17287344-17287363 None:intergenic 40.0%
ACTAAGGCCGAGAATTTATC+AGG + chr5_4:17287416-17287435 None:intergenic 40.0%
! ATGCCTACATCTTTTCCAAG+TGG - chr5_4:17287449-17287468 Msa0841210:intron 40.0%
TTGGCCTAGAAATCCCAATT+GGG + chr5_4:17287477-17287496 None:intergenic 40.0%
TTTGGCCTAGAAATCCCAAT+TGG + chr5_4:17287478-17287497 None:intergenic 40.0%
!! AGAGTATTGGAATGTTTGCC+TGG + chr5_4:17287546-17287565 None:intergenic 40.0%
GTTAAAACGTGGGTTCAATG+TGG - chr5_4:17287724-17287743 Msa0841210:CDS 40.0%
CATGGAAAATCTCAGTGTTG+AGG + chr5_4:17287870-17287889 None:intergenic 40.0%
ATGTGAGATTGAGGTTCAAC+TGG - chr5_4:17287893-17287912 Msa0841210:intron 40.0%
!!! AAGCGGGTTGTGAGTTTTTA+CGG - chr5_4:17287965-17287984 Msa0841210:intron 40.0%
GCAATTACTGAGATTATGGG+TGG - chr5_4:17288003-17288022 Msa0841210:intron 40.0%
ATTAGGCTTAAGAGGGGATT+AGG - chr5_4:17288029-17288048 Msa0841210:intron 40.0%
TTAGGCTTAAGAGGGGATTA+GGG - chr5_4:17288030-17288049 Msa0841210:intron 40.0%
!! GGGAGAACAAGTTGGATTTT+TGG - chr5_4:17288249-17288268 Msa0841210:intron 40.0%
! CAACCAAACTACCGATTACT+AGG - chr5_4:17288292-17288311 Msa0841210:intron 40.0%
! ACCAAACTACCGATTACTAG+GGG - chr5_4:17288294-17288313 Msa0841210:intron 40.0%
AAAAGAGTCCCCCTAGTAAT+CGG + chr5_4:17288306-17288325 None:intergenic 40.0%
! CTCTTTTTCCTGGGATCTAA+AGG - chr5_4:17288319-17288338 Msa0841210:intron 40.0%
AAAGATAAATGGTGCGAGAG+AGG + chr5_4:17288831-17288850 None:intergenic 40.0%
CAGCAACACATGTTACCTTT+CGG + chr5_4:17288973-17288992 None:intergenic 40.0%
ACCACAAAAGATTTCTTCCG+CGG - chr5_4:17289009-17289028 Msa0841210:intron 40.0%
!! AAGTACCGGTTAAAAGGCAT+AGG + chr5_4:17289155-17289174 None:intergenic 40.0%
! CTTTTGGCCAGTAAAGCTTT+TGG - chr5_4:17289288-17289307 Msa0841210:intron 40.0%
GACATACCCAAAAGCTTTAC+TGG + chr5_4:17289298-17289317 None:intergenic 40.0%
CCAACAAATATGCAACTCCA+CGG + chr5_4:17289473-17289492 None:intergenic 40.0%
TATGTGATGAATTAGGGGAG+CGG - chr5_4:17289609-17289628 Msa0841210:intron 40.0%
CATGCCAATAAGAGTGAAGT+CGG - chr5_4:17289780-17289799 Msa0841210:intron 40.0%
!! TTTGCCGACTTCACTCTTAT+TGG + chr5_4:17289787-17289806 None:intergenic 40.0%
AGAGTGAAGTCGGCAAAATT+TGG - chr5_4:17289790-17289809 Msa0841210:intron 40.0%
! AGTCGGCAAAATTTGGAACA+AGG - chr5_4:17289797-17289816 Msa0841210:intron 40.0%
! GTCGGCAAAATTTGGAACAA+GGG - chr5_4:17289798-17289817 Msa0841210:intron 40.0%
AAAACTGTCTGCAACTCATG+CGG - chr5_4:17290063-17290082 Msa0841210:intron 40.0%
ATGCGGAAACCTATATCAGT+AGG - chr5_4:17290080-17290099 Msa0841210:intron 40.0%
!! TCGATTTGTTGACTGGTGTA+TGG + chr5_4:17290214-17290233 None:intergenic 40.0%
TAGGTCCCTTCAATTATGTC+AGG - chr5_4:17290465-17290484 Msa0841210:intron 40.0%
GAACTCGATTATTCCGTGTT+GGG + chr5_4:17290628-17290647 None:intergenic 40.0%
TGAACTCGATTATTCCGTGT+TGG + chr5_4:17290629-17290648 None:intergenic 40.0%
TCGAGTTCATAAATGCCATG+AGG - chr5_4:17290640-17290659 Msa0841210:intron 40.0%
CGAGTTCATAAATGCCATGA+GGG - chr5_4:17290641-17290660 Msa0841210:intron 40.0%
TCGACGGCTGAAAGAAAATT+AGG + chr5_4:17290675-17290694 None:intergenic 40.0%
AGACATCGTATAGACTCGTT+TGG - chr5_4:17290792-17290811 Msa0841210:intron 40.0%
AAGGAAGCCGAAAATGATGA+TGG - chr5_4:17291412-17291431 Msa0841210:intron 40.0%
AGGGATATGAAACCCATAAG+TGG - chr5_4:17291842-17291861 Msa0841210:CDS 40.0%
TAGTACCAATCATGGCACTT+GGG - chr5_4:17291872-17291891 Msa0841210:CDS 40.0%
ATGAAATCTTCCGCTCAACA+TGG - chr5_4:17291941-17291960 Msa0841210:CDS 40.0%
! TGGGATTTTTCCATGTTGAG+CGG + chr5_4:17291954-17291973 None:intergenic 40.0%
! ATGTTAGGGCAAGGCCTTTT+AGG - chr5_4:17286374-17286393 Msa0841210:CDS 45.0%
CAGTCTGGATAACGCCTAAA+AGG + chr5_4:17286391-17286410 None:intergenic 45.0%
!! TTAAAACAGCCAAAAGCGCC+TGG - chr5_4:17286516-17286535 Msa0841210:CDS 45.0%
ACCTTGTTCATGATCTGCAC+CGG + chr5_4:17286579-17286598 None:intergenic 45.0%
!! TTGTTCTGGAAGGTGATGAG+AGG - chr5_4:17286717-17286736 Msa0841210:CDS 45.0%
AGCAGTGATTGCTGGAAATG+TGG - chr5_4:17286815-17286834 Msa0841210:CDS 45.0%
CCCAGAAACGTTGCTAGAAA+AGG - chr5_4:17286974-17286993 Msa0841210:intron 45.0%
TAGCGGCAGCTAGAAGAATA+GGG + chr5_4:17287019-17287038 None:intergenic 45.0%
TTAGCGGCAGCTAGAAGAAT+AGG + chr5_4:17287020-17287039 None:intergenic 45.0%
! ATTCTTCTAGCTGCCGCTAA+TGG - chr5_4:17287020-17287039 Msa0841210:intron 45.0%
!!! GGGGGTTTTGGAGTAAAGAT+AGG + chr5_4:17287063-17287082 None:intergenic 45.0%
!!! TTTGGATTTGGTGGGGGTTT+TGG + chr5_4:17287075-17287094 None:intergenic 45.0%
CTCAAAGCCACATCTGATCA+TGG + chr5_4:17287260-17287279 None:intergenic 45.0%
GGCCGAGAATTTATCAGGTA+AGG + chr5_4:17287411-17287430 None:intergenic 45.0%
ATTCTCGGCCTTAGTTGCAT+TGG - chr5_4:17287421-17287440 Msa0841210:intron 45.0%
!! GTGCCACTTGGAAAAGATGT+AGG + chr5_4:17287455-17287474 None:intergenic 45.0%
! TTTTCCAAGTGGCACCCAAT+TGG - chr5_4:17287460-17287479 Msa0841210:CDS 45.0%
TTTCCAAGTGGCACCCAATT+GGG - chr5_4:17287461-17287480 Msa0841210:CDS 45.0%
TCCATGAGCATGTGAGATTG+AGG - chr5_4:17287884-17287903 Msa0841210:intron 45.0%
ACCTCAATCTCACATGCTCA+TGG + chr5_4:17287888-17287907 None:intergenic 45.0%
GAGATTATGGGTGGGGAATT+AGG - chr5_4:17288012-17288031 Msa0841210:intron 45.0%
GTGGGGAATTAGGCTTAAGA+GGG - chr5_4:17288022-17288041 Msa0841210:intron 45.0%
TGGGGAATTAGGCTTAAGAG+GGG - chr5_4:17288023-17288042 Msa0841210:intron 45.0%
AATCGTTCGGGAGAACAAGT+TGG - chr5_4:17288241-17288260 Msa0841210:intron 45.0%
! CCAAACTACCGATTACTAGG+GGG - chr5_4:17288295-17288314 Msa0841210:intron 45.0%
AGGATTGCTATATGCTGCGA+AGG - chr5_4:17288674-17288693 Msa0841210:intron 45.0%
GAAGGAAATGATGCATGACC+TGG - chr5_4:17288692-17288711 Msa0841210:intron 45.0%
ACCTGGATACGACAAAACGT+GGG - chr5_4:17288709-17288728 Msa0841210:intron 45.0%
GCAAAACTAAATCCAAGGGC+TGG - chr5_4:17288779-17288798 Msa0841210:intron 45.0%
TTGCATTGCAGATTTGAGCG+TGG - chr5_4:17288898-17288917 Msa0841210:intron 45.0%
TTGCAGATTTGAGCGTGGAA+AGG - chr5_4:17288903-17288922 Msa0841210:intron 45.0%
TCGGACGAAGTTCCCAATTT+CGG + chr5_4:17288954-17288973 None:intergenic 45.0%
AATTGGGAACTTCGTCCGAA+AGG - chr5_4:17288955-17288974 Msa0841210:intron 45.0%
! ACCGCGGAAGAAATCTTTTG+TGG + chr5_4:17289013-17289032 None:intergenic 45.0%
CCGTGGAGTTGCATATTTGT+TGG - chr5_4:17289470-17289489 Msa0841210:intron 45.0%
! TTGCAGACAGTTTTGCACGT+TGG + chr5_4:17290057-17290076 None:intergenic 45.0%
!! GGTTCGATCGATTTGTTGAC+TGG + chr5_4:17290221-17290240 None:intergenic 45.0%
TGAAGGGACCTAATCAGTCT+TGG + chr5_4:17290457-17290476 None:intergenic 45.0%
AGTTACTTCTGCCGAAGTGT+TGG - chr5_4:17290543-17290562 Msa0841210:intron 45.0%
ATGTTGCATGCATCCCAACA+CGG - chr5_4:17290612-17290631 Msa0841210:intron 45.0%
! ATTAGGATTAGCGTCCCTCA+TGG + chr5_4:17290658-17290677 None:intergenic 45.0%
ACATTCTGTCAATGGACGGA+AGG - chr5_4:17290761-17290780 Msa0841210:intron 45.0%
!! TGGCAATAACTTGTTGCACC+TGG - chr5_4:17290812-17290831 Msa0841210:intron 45.0%
CTGCTATGACGATCAGATGA+AGG + chr5_4:17290852-17290871 None:intergenic 45.0%
TCTGATCGTCATAGCAGATC+CGG - chr5_4:17290855-17290874 Msa0841210:intron 45.0%
CATCTTTCACTAGCTCCTCA+TGG + chr5_4:17291468-17291487 None:intergenic 45.0%
CATGAGGAGCTAGTGAAAGA+TGG - chr5_4:17291466-17291485 Msa0841210:CDS 45.0%
AAAGGCTGCAGCAAACATGA+TGG + chr5_4:17291551-17291570 None:intergenic 45.0%
GTTTCCACCTGGAACTGTAA+AGG + chr5_4:17291569-17291588 None:intergenic 45.0%
ACTTTCTCAAGAGCTTGCCT+TGG - chr5_4:17291731-17291750 Msa0841210:intron 45.0%
GTAGTACCAATCATGGCACT+TGG - chr5_4:17291871-17291890 Msa0841210:CDS 45.0%
ATACTCCCAAGTGCCATGAT+TGG + chr5_4:17291880-17291899 None:intergenic 45.0%
!! TATTAATAAGTTATTTAAAA+AGG - chr5_4:17288145-17288164 Msa0841210:intron 5.0%
!!! TCTTTTTATTATTTTTTTTA+AGG - chr5_4:17289381-17289400 Msa0841210:intron 5.0%
! GTGATGAGAGGTACGCCTAT+TGG - chr5_4:17286729-17286748 Msa0841210:CDS 50.0%
! GCGCTTGTTGCACGTTATAC+TGG - chr5_4:17286906-17286925 Msa0841210:CDS 50.0%
TTCCCTCAACAACGTAGGGA+CGG + chr5_4:17287339-17287358 None:intergenic 50.0%
TCAGGTAAGGATTGCTGGAG+AGG + chr5_4:17287398-17287417 None:intergenic 50.0%
!! AATCCCAATTGGGTGCCACT+TGG + chr5_4:17287467-17287486 None:intergenic 50.0%
GGCACCCAATTGGGATTTCT+AGG - chr5_4:17287470-17287489 Msa0841210:CDS 50.0%
GGTGGGGAATTAGGCTTAAG+AGG - chr5_4:17288021-17288040 Msa0841210:intron 50.0%
CCCCCTAGTAATCGGTAGTT+TGG + chr5_4:17288298-17288317 None:intergenic 50.0%
! ACTAGGGGGACTCTTTTTCC+TGG - chr5_4:17288309-17288328 Msa0841210:intron 50.0%
! CTAGGGGGACTCTTTTTCCT+GGG - chr5_4:17288310-17288329 Msa0841210:intron 50.0%
GACCTGGATACGACAAAACG+TGG - chr5_4:17288708-17288727 Msa0841210:intron 50.0%
ATTTCTTCCGCGGTCCAATG+TGG - chr5_4:17289019-17289038 Msa0841210:intron 50.0%
CCTTTCTGCCTATGCCACAT+TGG + chr5_4:17289036-17289055 None:intergenic 50.0%
CCAATGTGGCATAGGCAGAA+AGG - chr5_4:17289033-17289052 Msa0841210:intron 50.0%
TGCAGAAGCCTCTTTGAGCT+TGG + chr5_4:17290583-17290602 None:intergenic 50.0%
TTGCACCTGGCAGCACATTT+AGG - chr5_4:17290825-17290844 Msa0841210:intron 50.0%
AAGGACCTAAATGTGCTGCC+AGG + chr5_4:17290833-17290852 None:intergenic 50.0%
TTGCATTTGCAGAGCAGCAC+CGG + chr5_4:17290877-17290896 None:intergenic 50.0%
! GTTTTGTCGTCGTTTCCACC+TGG + chr5_4:17291580-17291599 None:intergenic 50.0%
GGTGGAAACGACGACAAAAC+TGG - chr5_4:17291580-17291599 Msa0841210:CDS 50.0%
GCCGGTGCAGATCATGAACA+AGG - chr5_4:17286575-17286594 Msa0841210:CDS 55.0%
TGCGTGAAGTAGCGAAGACC+TGG + chr5_4:17286796-17286815 None:intergenic 55.0%
CTTCACGCAGCAGTGATTGC+TGG - chr5_4:17286807-17286826 Msa0841210:CDS 55.0%
TCTCCGTCCCTACGTTGTTG+AGG - chr5_4:17287333-17287352 Msa0841210:intron 55.0%
CTCCGTCCCTACGTTGTTGA+GGG - chr5_4:17287334-17287353 Msa0841210:intron 55.0%
! GCCCACGTTTTGTCGTATCC+AGG + chr5_4:17288713-17288732 None:intergenic 55.0%
GCCTCTATGGCAGCTATCGA+CGG + chr5_4:17290691-17290710 None:intergenic 55.0%
GGCTGCAGCAAACATGATGG+TGG + chr5_4:17291548-17291567 None:intergenic 55.0%
GCTGCAGCCTTTACAGTTCC+AGG - chr5_4:17291559-17291578 Msa0841210:CDS 55.0%
GCAGCCTTTACAGTTCCAGG+TGG - chr5_4:17291562-17291581 Msa0841210:CDS 55.0%
GACGAATGCACACCAGCCCT+TGG + chr5_4:17288794-17288813 None:intergenic 60.0%
TCCGCGGTCCAATGTGGCAT+AGG - chr5_4:17289025-17289044 Msa0841210:intron 60.0%
GCCTATGCCACATTGGACCG+CGG + chr5_4:17289029-17289048 None:intergenic 60.0%
GCCGTCGATAGCTGCCATAG+AGG - chr5_4:17290687-17290706 Msa0841210:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17286374 17291993 17286374 ID=Msa0841210;Name=Msa0841210
chr5_4 mRNA 17286374 17291993 17286374 ID=Msa0841210-mRNA-1;Parent=Msa0841210;Name=Msa0841210-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0.5|0.42|7|0|637
chr5_4 exon 17291771 17291993 17291771 ID=Msa0841210-mRNA-1:exon:7406;Parent=Msa0841210-mRNA-1
chr5_4 exon 17291449 17291685 17291449 ID=Msa0841210-mRNA-1:exon:7405;Parent=Msa0841210-mRNA-1
chr5_4 exon 17291203 17291424 17291203 ID=Msa0841210-mRNA-1:exon:7404;Parent=Msa0841210-mRNA-1
chr5_4 exon 17290858 17291100 17290858 ID=Msa0841210-mRNA-1:exon:7403;Parent=Msa0841210-mRNA-1
chr5_4 exon 17287724 17287880 17287724 ID=Msa0841210-mRNA-1:exon:7402;Parent=Msa0841210-mRNA-1
chr5_4 exon 17287450 17287669 17287450 ID=Msa0841210-mRNA-1:exon:7401;Parent=Msa0841210-mRNA-1
chr5_4 exon 17286374 17286985 17286374 ID=Msa0841210-mRNA-1:exon:7400;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17291771 17291993 17291771 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17291449 17291685 17291449 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17291203 17291424 17291203 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17290858 17291100 17290858 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17287724 17287880 17287724 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17287450 17287669 17287450 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
chr5_4 CDS 17286374 17286985 17286374 ID=Msa0841210-mRNA-1:cds;Parent=Msa0841210-mRNA-1
Gene Sequence

>Msa0841210

ATGTTAGGGCAAGGCCTTTTAGGCGTTATCCAGACTGTTTCAGAATTCGAAACTGATGCTTCATGGAAAATAAAGGATGTGAAAGCTTTGCATATCATTCAACTATCATGTGGACGAGAGATTGCTGATGAGATTAGTCATTTTAAAACAGCCAAAAGCGCCTGGAATCATTTAGGCTCATTATATGGCAAAGATTTAACAGCCGGTGCAGATCATGAACAAGATGTGGATGATAGCCACTCTCCAAAGAATAAAGAATTGTTCTGGAAGGTGATGAGAGGTACGCCTATTGGAAATATCGGTATGGACTCGAATGTATATATGACATCGGCTTCCAGGTCTTCGCTACTTCACGCAGCAGTGATTGCTGGAAATGTGGAATTGTTGGTGAAAGTAGGGAAAGACACGTTAATATGCATGCAAGACGAACACGGTGACACAGCTCTTGCGCTTGTTGCACCAAAGTGCATGGTAGAGGAAATAAAGGGACTCCCAGAAACGTTGCTAGAAAAGGAGAACAATGACAATGTAATCCCTATTCTTCTAGCTGCCGCTAATGGACACAAAGAATTGACTTCCTATCTTTACTCCAAAACCCCCACCAAATCCAAAGTGTTTGACAAATCCAATTCACAGAATCGAGTTTTGCTTCTTTCACTATGTATCACTGCTGAAATATTTGATGTGGCTTTGAGATTACTCAGACGTTTCAAAGATCTGCCCGAGCAATCATTATCAATATATAACTTCTCCGTCCCTACGTTGTTGAGGGAATCATTATCACTACCTAGCAAAATATCAGAATCAGATCCTCTCCAGCAATCCTTACCTGATAAATTCTCGGCCTTAGTTGCATTGGCAAAAATGCCTACATCTTTTCCAAGTGGCACCCAATTGGGATTTCTAGGCCAAATTATTTATGAAAGAATCAGGAAGATATATGATCAGAAATACACACATTATGAAGTTATAGGAATATTGAGTTACTTCTGCCGAAGTGTTGGAAAATTTAATAGTTCCAAGCTCAAAGAGGCTTCTGCATATGAAGCAATGTTGCATGCATCCCAACACGGAATAATCGACTGCCATAGAGGCATATTTTCGTATGCAATCTTGCATCGCAAACAAAATGTGTTTCAACTCATACATTCTGTCAATGGACGGAAGGAGATACTTAGACATCGTATAGACTCGTTTGGCAATAACTTGTTGCACCTGGCAGCACATTTAGGTCCTTCATCTGATCGTCATAGCAGATCCGGTGCTGCTCTGCAAATGCAAAGAGAGTTTCAATGGTTTAAGGCGGTTGAGAAAGTTTTACATCCCAAGTTTAAGGAAGCCGAAAATGATGATGGTAAGAAGCCTTATGAGATATTCATTGAAAGCCATGAGGAGCTAGTGAAAGATGGAGAGAAATGGGCAAAAGACACAGCAACATCTTATACAATTGTAGGTACTCTCATCACCACCATCATGTTTGCTGCAGCCTTTACAGTTCCAGGTGGAAACGACGACAAAACTGGTTTGCCCATCTTCTTACATGACAACATATTCACTGCATTTCTCATGGCAGACGCAGTATCTCTCTTCGCATCTGCGACTTCCGTCTTGATTTTCATTGGTATACTCACATCGCGTTATGCTGAGAAAGACTTTCTCAAGAGCTTGCCTTGGAAGTTATTGTTTGGTCTTTTGCTCCTTTTTCTCTCTGTTTGTTCTATGATAGTTGCATTTAGCGCTGCCATTATCGACATGATCTTAAAGGGATATGAAACCCATAAGTGGTTCATTGTAGTACCAATCATGGCACTTGGGAGTATTCCGATTATCGTTCTTGTAATATCACAGGTGAGCTTCATGTATGAAATCTTCCGCTCAACATGGAAAAATCCCATCCGTTCAATAAACAAATGA
Protein sequence

>Msa0841210

MLGQGLLGVIQTVSEFETDASWKIKDVKALHIIQLSCGREIADEISHFKTAKSAWNHLGSLYGKDLTAGADHEQDVDDSHSPKNKELFWKVMRGTPIGNIGMDSNVYMTSASRSSLLHAAVIAGNVELLVKVGKDTLICMQDEHGDTALALVAPKCMVEEIKGLPETLLEKENNDNVIPILLAAANGHKELTSYLYSKTPTKSKVFDKSNSQNRVLLLSLCITAEIFDVALRLLRRFKDLPEQSLSIYNFSVPTLLRESLSLPSKISESDPLQQSLPDKFSALVALAKMPTSFPSGTQLGFLGQIIYERIRKIYDQKYTHYEVIGILSYFCRSVGKFNSSKLKEASAYEAMLHASQHGIIDCHRGIFSYAILHRKQNVFQLIHSVNGRKEILRHRIDSFGNNLLHLAAHLGPSSDRHSRSGAALQMQREFQWFKAVEKVLHPKFKEAENDDGKKPYEIFIESHEELVKDGEKWAKDTATSYTIVGTLITTIMFAAAFTVPGGNDDKTGLPIFLHDNIFTAFLMADAVSLFASATSVLIFIGILTSRYAEKDFLKSLPWKLLFGLLLLFLSVCSMIVAFSAAIIDMILKGYETHKWFIVVPIMALGSIPIIVLVISQVSFMYEIFRSTWKNPIRSINK*