Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720110 | XP_003612831.1 | 98.143 | 377 | 7 | 0 | 13 | 389 | 1 | 377 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720110 | sp|O82290|SKL2_ARATH | 69.841 | 315 | 95 | 0 | 69 | 383 | 67 | 381 | 5.28e-157 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720110 | G7KCE4 | 98.143 | 377 | 7 | 0 | 13 | 389 | 1 | 377 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720110 | Msa0787410 | 0.873645 | 1.252063e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720110 | MtrunA17_Chr5g0410771 | 98.143 | 377 | 7 | 0 | 13 | 389 | 1 | 377 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720110 | AT2G35500.1 | 69.841 | 315 | 95 | 0 | 69 | 383 | 67 | 381 | 5.36e-158 | 450 |
Find 99 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTCTTCAGCCACTTTC+TGG | 0.132886 | 5_1:-15982368 | None:intergenic |
| AACTTATAGGATATTGTAAT+TGG | 0.156625 | 5_1:+15981370 | Msa0720110:five_prime_UTR |
| GAACGCAGCGAGACGAAATT+TGG | 0.246695 | 5_1:-15981528 | None:intergenic |
| CTGGAAGTTTCTTGTCTGAT+AGG | 0.299443 | 5_1:-15984456 | None:intergenic |
| GTTTCACCACCTTCACTTGA+TGG | 0.305523 | 5_1:-15985170 | None:intergenic |
| TCGTAAGTTGTGGTGGAAAC+AGG | 0.339571 | 5_1:-15981624 | None:intergenic |
| TGAAGAGCTTGCTACTGGTC+TGG | 0.344091 | 5_1:+15982380 | Msa0720110:CDS |
| GAAGAGCTTGCTACTGGTCT+GGG | 0.347927 | 5_1:+15982381 | Msa0720110:CDS |
| GGCAGTGAAGGAACATTTGC+AGG | 0.351085 | 5_1:-15981601 | None:intergenic |
| TTCTATCTCTGTTTGTGAAA+TGG | 0.353402 | 5_1:+15981416 | Msa0720110:CDS |
| TTAAACCCTCGGAAACAATA+TGG | 0.358216 | 5_1:+15982095 | Msa0720110:CDS |
| CTATCAGACAAGAAACTTCC+AGG | 0.381417 | 5_1:+15984457 | Msa0720110:CDS |
| CTGCTGGAAGATCTGATAAA+TGG | 0.382309 | 5_1:+15983723 | Msa0720110:CDS |
| ACATGAATCCACGGTTTGAT+TGG | 0.384554 | 5_1:-15982621 | None:intergenic |
| AAGTACAGTGCCTTCGCCTT+CGG | 0.393292 | 5_1:-15983550 | None:intergenic |
| TCATGGGAATCGCTCGCTGC+TGG | 0.401946 | 5_1:+15982285 | Msa0720110:CDS |
| TTTATGCAGGATTTACTGTC+TGG | 0.408090 | 5_1:+15983753 | Msa0720110:CDS |
| AGGGCAGCAGTTGCAACATT+AGG | 0.414670 | 5_1:+15983686 | Msa0720110:CDS |
| TTCACTTGATGGATCCCAAC+CGG | 0.425148 | 5_1:-15985159 | None:intergenic |
| ATGGAGTTAAGATTAAATAT+AGG | 0.430953 | 5_1:+15981947 | Msa0720110:CDS |
| GGAAGAAACCTGAGAGCAGC+AGG | 0.435236 | 5_1:-15981456 | None:intergenic |
| AAAACGATCCTGAGTTGAAA+TGG | 0.440141 | 5_1:+15982247 | Msa0720110:CDS |
| CTACCACTCCTGCTGCTCTC+AGG | 0.447405 | 5_1:+15981448 | Msa0720110:CDS |
| GGAGGTAAACATGGTGCTGC+TGG | 0.447752 | 5_1:+15983707 | Msa0720110:CDS |
| AGTGCTCTGCTAGTCATGTA+AGG | 0.451996 | 5_1:+15983666 | Msa0720110:intron |
| GGAATCACCAACAAGATAGA+TGG | 0.454311 | 5_1:-15982334 | None:intergenic |
| GGCCTGACATCATGGAATCA+TGG | 0.458410 | 5_1:+15982268 | Msa0720110:CDS |
| AGATGTGGTTGTGAAATTAC+AGG | 0.459192 | 5_1:+15984369 | Msa0720110:CDS |
| CATAAAACTTAGCATACAAA+GGG | 0.461286 | 5_1:-15985448 | None:intergenic |
| ATTAGTGTCTATCAACGTAA+TGG | 0.470764 | 5_1:-15982056 | None:intergenic |
| ACTTATAGGATATTGTAATT+GGG | 0.472051 | 5_1:+15981371 | Msa0720110:five_prime_UTR |
| TTAGTGTCTATCAACGTAAT+GGG | 0.472184 | 5_1:-15982055 | None:intergenic |
| TTCCTGGTTGTGGGGTTTGG+AGG | 0.472863 | 5_1:-15981477 | None:intergenic |
| AAAAGCCTGTACATAAGATT+GGG | 0.473332 | 5_1:+15985104 | Msa0720110:CDS |
| TCCCATGATTCCATGATGTC+AGG | 0.474648 | 5_1:-15982270 | None:intergenic |
| ACGATCAGAGTGTTGCAGTC+AGG | 0.476415 | 5_1:+15982028 | Msa0720110:CDS |
| GATTGGGATGTCGTGGTGAT+TGG | 0.488854 | 5_1:+15985120 | Msa0720110:CDS |
| CACTTTCTGGTTGATTTCAG+TGG | 0.492804 | 5_1:-15982355 | None:intergenic |
| AAATGGCGACATCTTTATGC+AGG | 0.496184 | 5_1:+15983740 | Msa0720110:CDS |
| TTATGCTAAAAGTGTGGCAC+AGG | 0.496935 | 5_1:+15984405 | Msa0720110:CDS |
| GGAACATCCATCTATCTTGT+TGG | 0.499276 | 5_1:+15982327 | Msa0720110:CDS |
| TCACTTGATGGATCCCAACC+GGG | 0.503267 | 5_1:-15985158 | None:intergenic |
| TTCTGATAATGCTTCAGAGA+TGG | 0.507023 | 5_1:+15981928 | Msa0720110:CDS |
| AAGAAGCACAAAAGACATAT+CGG | 0.507065 | 5_1:+15981982 | Msa0720110:CDS |
| ATTCCAGGGCTGCTTGCTGA+AGG | 0.508946 | 5_1:+15983513 | Msa0720110:intron |
| GAACATTTGCAGGGAGAAAG+AGG | 0.509068 | 5_1:-15981591 | None:intergenic |
| CGTTTAATATGTGTGACCAT+TGG | 0.509143 | 5_1:+15985504 | Msa0720110:three_prime_UTR |
| GCCTGACATCATGGAATCAT+GGG | 0.510245 | 5_1:+15982269 | Msa0720110:CDS |
| GTGGCTGAAGAGCTTGCTAC+TGG | 0.517891 | 5_1:+15982375 | Msa0720110:CDS |
| TTGTCACAGACTGAAGCATC+AGG | 0.519376 | 5_1:+15983776 | Msa0720110:CDS |
| CGTAAGTTGTGGTGGAAACA+GGG | 0.526645 | 5_1:-15981623 | None:intergenic |
| CACTGAAATCAACCAGAAAG+TGG | 0.526884 | 5_1:+15982356 | Msa0720110:CDS |
| TGAGATTGAGAAAATGATGA+AGG | 0.537787 | 5_1:-15981561 | None:intergenic |
| CACAAACCATATTGTTTCCG+AGG | 0.538620 | 5_1:-15982101 | None:intergenic |
| GACATCCCAATCTTATGTAC+AGG | 0.539700 | 5_1:-15985109 | None:intergenic |
| CTCAAGATCGTCACATCCAA+TGG | 0.545447 | 5_1:-15985520 | None:intergenic |
| TTCCTCCAAACCCCACAACC+AGG | 0.548734 | 5_1:+15981475 | Msa0720110:CDS |
| GTTGAAATGGCCTGACATCA+TGG | 0.556044 | 5_1:+15982260 | Msa0720110:CDS |
| AGTGAAGGTGGTGAAACTCT+TGG | 0.556988 | 5_1:+15985176 | Msa0720110:CDS |
| AAACCTGAGAGCAGCAGGAG+TGG | 0.561605 | 5_1:-15981451 | None:intergenic |
| AAGATTAAATATAGGAAACA+TGG | 0.562321 | 5_1:+15981955 | Msa0720110:CDS |
| GGTGGAAACAGGGGCAGTGA+AGG | 0.571453 | 5_1:-15981613 | None:intergenic |
| GCAGCAGTTGCAACATTAGG+AGG | 0.571731 | 5_1:+15983689 | Msa0720110:CDS |
| TCATAAAACTTAGCATACAA+AGG | 0.573858 | 5_1:-15985449 | None:intergenic |
| ATGTCAGGCCATTTCAACTC+AGG | 0.577136 | 5_1:-15982255 | None:intergenic |
| CACTTGATGGATCCCAACCG+GGG | 0.581260 | 5_1:-15985157 | None:intergenic |
| CTGTACTTGAAAGCATAAGT+AGG | 0.593080 | 5_1:+15983565 | Msa0720110:CDS |
| AAGTACCTCGTAAGTTGTGG+TGG | 0.595394 | 5_1:-15981631 | None:intergenic |
| AGATGAAGATTCAGCAAGGG+AGG | 0.603993 | 5_1:+15984300 | Msa0720110:intron |
| AGTAAGTACCTCGTAAGTTG+TGG | 0.608725 | 5_1:-15981634 | None:intergenic |
| AAGAGCTTGCTACTGGTCTG+GGG | 0.608924 | 5_1:+15982382 | Msa0720110:CDS |
| GACTCAGTAGCCGAAGGCGA+AGG | 0.609903 | 5_1:+15983540 | Msa0720110:CDS |
| GGTTGTGAAATTACAGGGAT+GGG | 0.612080 | 5_1:+15984375 | Msa0720110:CDS |
| ACAAACCATATTGTTTCCGA+GGG | 0.614295 | 5_1:-15982100 | None:intergenic |
| TGTTTCCACCACAACTTACG+AGG | 0.616074 | 5_1:+15981626 | Msa0720110:CDS |
| AAACTTAGCATACAAAGGGG+TGG | 0.617388 | 5_1:-15985444 | None:intergenic |
| ACTTGATGGATCCCAACCGG+GGG | 0.619202 | 5_1:-15985156 | None:intergenic |
| AACTTATTCCAATCAAACCG+TGG | 0.626048 | 5_1:+15982613 | Msa0720110:CDS |
| GTGCTCTGCTAGTCATGTAA+GGG | 0.626183 | 5_1:+15983667 | Msa0720110:intron |
| AACATTTGCAGGGAGAAAGA+GGG | 0.627712 | 5_1:-15981590 | None:intergenic |
| TACAGATGAAGATTCAGCAA+GGG | 0.627827 | 5_1:+15984297 | Msa0720110:intron |
| ATGACACTTACATGAATCCA+CGG | 0.632412 | 5_1:-15982630 | None:intergenic |
| TGGTTGTGAAATTACAGGGA+TGG | 0.647286 | 5_1:+15984374 | Msa0720110:CDS |
| GGTTCTGACTCAGTAGCCGA+AGG | 0.651113 | 5_1:+15983534 | Msa0720110:CDS |
| TCCTGCTTATGCTAAAAGTG+TGG | 0.654346 | 5_1:+15984399 | Msa0720110:CDS |
| TGGGATCCATCAAGTGAAGG+TGG | 0.654631 | 5_1:+15985164 | Msa0720110:CDS |
| GGTTGGGATCCATCAAGTGA+AGG | 0.654783 | 5_1:+15985161 | Msa0720110:CDS |
| TGCATATACGAATGCAGATG+TGG | 0.657277 | 5_1:+15984354 | Msa0720110:CDS |
| GCAGTGAAGGAACATTTGCA+GGG | 0.659693 | 5_1:-15981600 | None:intergenic |
| TACATAAGATTGGGATGTCG+TGG | 0.660254 | 5_1:+15985113 | Msa0720110:CDS |
| TATAGATGATGATCATCTTG+TGG | 0.662960 | 5_1:+15982212 | Msa0720110:CDS |
| ATACAGATGAAGATTCAGCA+AGG | 0.667293 | 5_1:+15984296 | Msa0720110:intron |
| CTAATCACAAATAATCAACA+TGG | 0.675298 | 5_1:+15985372 | Msa0720110:three_prime_UTR |
| GTAAGTTGTGGTGGAAACAG+GGG | 0.682098 | 5_1:-15981622 | None:intergenic |
| GCAACATTAGGAGGTAAACA+TGG | 0.688881 | 5_1:+15983698 | Msa0720110:CDS |
| GATGTGGTTGTGAAATTACA+GGG | 0.701042 | 5_1:+15984370 | Msa0720110:CDS |
| CTTGATGGATCCCAACCGGG+GGG | 0.707433 | 5_1:-15985155 | None:intergenic |
| TATGCTAAAAGTGTGGCACA+GGG | 0.729528 | 5_1:+15984406 | Msa0720110:CDS |
| ATAAAACTTAGCATACAAAG+GGG | 0.743011 | 5_1:-15985447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATAGAAAAAGAAAT+TGG | - | chr5_1:15981828-15981847 | None:intergenic | 10.0% |
| !!! | ATTTTAAACTATGTTAAAAA+TGG | + | chr5_1:15982126-15982145 | Msa0720110:intron | 10.0% |
| !!! | ATTTTAGTTGATATATTATT+TGG | + | chr5_1:15983801-15983820 | Msa0720110:intron | 10.0% |
| !! | TCTAATTATGAATATTCATA+AGG | + | chr5_1:15982432-15982451 | Msa0720110:intron | 15.0% |
| !! | TAATATTACAATAAAACTCT+AGG | + | chr5_1:15982789-15982808 | Msa0720110:intron | 15.0% |
| !! | GCAAATATATATCAAAATAT+TGG | - | chr5_1:15983214-15983233 | None:intergenic | 15.0% |
| !!! | ATTTTCAAAGTCAAACTTAT+AGG | + | chr5_1:15981357-15981376 | Msa0720110:five_prime_UTR | 20.0% |
| !! | AACTTATAGGATATTGTAAT+TGG | + | chr5_1:15981370-15981389 | Msa0720110:five_prime_UTR | 20.0% |
| !! | ACTTATAGGATATTGTAATT+GGG | + | chr5_1:15981371-15981390 | Msa0720110:five_prime_UTR | 20.0% |
| !!! | ATTGAGAAAACAAACATTTT+TGG | + | chr5_1:15981691-15981710 | Msa0720110:intron | 20.0% |
| !!! | CTTTTTGTAATTTGATCTTT+TGG | + | chr5_1:15981850-15981869 | Msa0720110:intron | 20.0% |
| !! | ATGGAGTTAAGATTAAATAT+AGG | + | chr5_1:15981947-15981966 | Msa0720110:CDS | 20.0% |
| !! | AAGATTAAATATAGGAAACA+TGG | + | chr5_1:15981955-15981974 | Msa0720110:CDS | 20.0% |
| !! | ACATCTGAAAAAAAAAAACA+AGG | - | chr5_1:15982663-15982682 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTCAGATGTCT+TGG | + | chr5_1:15982665-15982684 | Msa0720110:intron | 20.0% |
| !!! | TTTTTTTTTTCAGATGTCTT+GGG | + | chr5_1:15982666-15982685 | Msa0720110:intron | 20.0% |
| !! | AAATGATTCAAGAAAAATGA+TGG | - | chr5_1:15983104-15983123 | None:intergenic | 20.0% |
| !!! | AATTTCTTCATTTCATTTTC+TGG | + | chr5_1:15983594-15983613 | Msa0720110:intron | 20.0% |
| !!! | TTTTGAAAAATTTCCAACAA+AGG | - | chr5_1:15984003-15984022 | None:intergenic | 20.0% |
| !!! | TTGTTGGAAATTTTTCAAAA+CGG | + | chr5_1:15984003-15984022 | Msa0720110:intron | 20.0% |
| !! | TTGGATAAACAGTTTAATTA+AGG | + | chr5_1:15984642-15984661 | Msa0720110:intron | 20.0% |
| !! | TGGATAAACAGTTTAATTAA+GGG | + | chr5_1:15984643-15984662 | Msa0720110:intron | 20.0% |
| !!! | TCTGAGTTTTTTGTTTTATA+GGG | - | chr5_1:15985288-15985307 | None:intergenic | 20.0% |
| !!! | TTCTGAGTTTTTTGTTTTAT+AGG | - | chr5_1:15985289-15985308 | None:intergenic | 20.0% |
| !!! | GCTAAGTTTTATGAATTAAT+CGG | + | chr5_1:15985458-15985477 | Msa0720110:three_prime_UTR | 20.0% |
| ! | ATTTGTACATTACAAACAGT+AGG | - | chr5_1:15981673-15981692 | None:intergenic | 25.0% |
| !! | TGAGTTTGATTTATAACTGA+TGG | + | chr5_1:15981877-15981896 | Msa0720110:intron | 25.0% |
| !! | ATCAGTTTGACTCTAATTTT+AGG | + | chr5_1:15982862-15982881 | Msa0720110:intron | 25.0% |
| !!! | TTGACTCTAATTTTAGGTAA+AGG | + | chr5_1:15982868-15982887 | Msa0720110:intron | 25.0% |
| ! | GATTATCCATATGCTAAAAT+AGG | - | chr5_1:15982934-15982953 | None:intergenic | 25.0% |
| ! | CAAAGATATGTTACAAATTG+AGG | + | chr5_1:15983024-15983043 | Msa0720110:intron | 25.0% |
| ! | TTTGATATATATTTGCGAGT+TGG | + | chr5_1:15983218-15983237 | Msa0720110:intron | 25.0% |
| !! | ATTAATATCCCTGACATTTT+TGG | - | chr5_1:15983261-15983280 | None:intergenic | 25.0% |
| ! | ATATAGGATTTAAGTGACTA+AGG | - | chr5_1:15983465-15983484 | None:intergenic | 25.0% |
| ! | GTTAATACACTGCAATATAT+AGG | - | chr5_1:15983481-15983500 | None:intergenic | 25.0% |
| ! | AACAAATGTAATCATATTCC+AGG | + | chr5_1:15983498-15983517 | Msa0720110:intron | 25.0% |
| ! | ACAAATGTAATCATATTCCA+GGG | + | chr5_1:15983499-15983518 | Msa0720110:intron | 25.0% |
| !!! | TATTATTTGGCTGTTTTTAC+AGG | + | chr5_1:15983814-15983833 | Msa0720110:intron | 25.0% |
| ! | ATAAAATTTCTTCGAGTCAA+GGG | - | chr5_1:15983911-15983930 | None:intergenic | 25.0% |
| !! | TGATAGGATTAACTGTTTTA+GGG | - | chr5_1:15984443-15984462 | None:intergenic | 25.0% |
| ! | TTGGATAAACAGTTTAATCA+AGG | + | chr5_1:15984753-15984772 | Msa0720110:intron | 25.0% |
| ! | TGGATAAACAGTTTAATCAA+GGG | + | chr5_1:15984754-15984773 | Msa0720110:intron | 25.0% |
| ! | TGACATTCATTATGTTTCTT+AGG | - | chr5_1:15984902-15984921 | None:intergenic | 25.0% |
| !!! | CTGAGTTTTTTGTTTTATAG+GGG | - | chr5_1:15985287-15985306 | None:intergenic | 25.0% |
| ! | CTAATCACAAATAATCAACA+TGG | + | chr5_1:15985372-15985391 | Msa0720110:three_prime_UTR | 25.0% |
| ! | TCCAACAAAAAATCATGTTA+CGG | - | chr5_1:15985401-15985420 | None:intergenic | 25.0% |
| !!! | TAACATGATTTTTTGTTGGA+TGG | + | chr5_1:15985401-15985420 | Msa0720110:three_prime_UTR | 25.0% |
| ! | ATAAAACTTAGCATACAAAG+GGG | - | chr5_1:15985450-15985469 | None:intergenic | 25.0% |
| ! | CATAAAACTTAGCATACAAA+GGG | - | chr5_1:15985451-15985470 | None:intergenic | 25.0% |
| ! | TCATAAAACTTAGCATACAA+AGG | - | chr5_1:15985452-15985471 | None:intergenic | 25.0% |
| TTCTATCTCTGTTTGTGAAA+TGG | + | chr5_1:15981416-15981435 | Msa0720110:CDS | 30.0% | |
| TGAGATTGAGAAAATGATGA+AGG | - | chr5_1:15981564-15981583 | None:intergenic | 30.0% | |
| ! | AAGAAGCACAAAAGACATAT+CGG | + | chr5_1:15981982-15982001 | Msa0720110:CDS | 30.0% |
| TTAGTGTCTATCAACGTAAT+GGG | - | chr5_1:15982058-15982077 | None:intergenic | 30.0% | |
| ATTAGTGTCTATCAACGTAA+TGG | - | chr5_1:15982059-15982078 | None:intergenic | 30.0% | |
| TATAGATGATGATCATCTTG+TGG | + | chr5_1:15982212-15982231 | Msa0720110:CDS | 30.0% | |
| TTTAATGTTCATCTCTTCTC+AGG | + | chr5_1:15982558-15982577 | Msa0720110:intron | 30.0% | |
| TATGCTAAAATAGGCAGAAT+TGG | - | chr5_1:15982925-15982944 | None:intergenic | 30.0% | |
| !!! | ATTCTGCCTATTTTAGCATA+TGG | + | chr5_1:15982925-15982944 | Msa0720110:intron | 30.0% |
| !! | TTTTTGGCAAAGTTCACTTA+AGG | - | chr5_1:15983245-15983264 | None:intergenic | 30.0% |
| !! | AATAGCTCTAAGATAAACCT+CGG | - | chr5_1:15983314-15983333 | None:intergenic | 30.0% |
| ! | TGCTAATATCTTTCGAGTAA+GGG | - | chr5_1:15983380-15983399 | None:intergenic | 30.0% |
| ! | ATGCTAATATCTTTCGAGTA+AGG | - | chr5_1:15983381-15983400 | None:intergenic | 30.0% |
| TTACTCGAAAGATATTAGCA+TGG | + | chr5_1:15983380-15983399 | Msa0720110:intron | 30.0% | |
| GCATCTTGTATTAGTATAAG+AGG | + | chr5_1:15983407-15983426 | Msa0720110:intron | 30.0% | |
| TGTATTAGTATAAGAGGACA+TGG | + | chr5_1:15983413-15983432 | Msa0720110:intron | 30.0% | |
| !! | TGTTTTCAAGGTTCAAAACA+AGG | - | chr5_1:15983871-15983890 | None:intergenic | 30.0% |
| GATAAAATTTCTTCGAGTCA+AGG | - | chr5_1:15983912-15983931 | None:intergenic | 30.0% | |
| TCATTACAAAGATTGTGTGT+TGG | + | chr5_1:15983930-15983949 | Msa0720110:intron | 30.0% | |
| ! | AACAAAGGTTGATTCAATCA+TGG | - | chr5_1:15983988-15984007 | None:intergenic | 30.0% |
| ATGATTGAATCAACCTTTGT+TGG | + | chr5_1:15983987-15984006 | Msa0720110:intron | 30.0% | |
| !! | GAAATTTTTCAAAACGGTGT+GGG | + | chr5_1:15984009-15984028 | Msa0720110:intron | 30.0% |
| AGAAGTGAGAAAACTAAACA+AGG | + | chr5_1:15984045-15984064 | Msa0720110:intron | 30.0% | |
| GAAGTGAGAAAACTAAACAA+GGG | + | chr5_1:15984046-15984065 | Msa0720110:intron | 30.0% | |
| AAGTGAGAAAACTAAACAAG+GGG | + | chr5_1:15984047-15984066 | Msa0720110:intron | 30.0% | |
| ! | CTGATAGGATTAACTGTTTT+AGG | - | chr5_1:15984444-15984463 | None:intergenic | 30.0% |
| !! | CAGAAGTTTGATGTTTTAAG+GGG | - | chr5_1:15984577-15984596 | None:intergenic | 30.0% |
| !! | CCAGAAGTTTGATGTTTTAA+GGG | - | chr5_1:15984578-15984597 | None:intergenic | 30.0% |
| ! | CATTTCGTTAAGAGTATGTT+TGG | + | chr5_1:15984623-15984642 | Msa0720110:intron | 30.0% |
| !! | CAGAAGTTTGATGTTTTAAG+GGG | - | chr5_1:15984577-15984596 | None:intergenic | 30.0% |
| !! | CCAGAAGTTTGATGTTTTAA+GGG | - | chr5_1:15984578-15984597 | None:intergenic | 30.0% |
| ! | CATTTCGTTAAGAGTATGTT+TGG | + | chr5_1:15984623-15984642 | Msa0720110:intron | 30.0% |
| ! | GCTCAAGATTTTATGTCATA+AGG | + | chr5_1:15984947-15984966 | Msa0720110:intron | 30.0% |
| TTCTAAATGTACCTTCTACA+TGG | + | chr5_1:15984998-15985017 | Msa0720110:intron | 30.0% | |
| TCTAAATGTACCTTCTACAT+GGG | + | chr5_1:15984999-15985018 | Msa0720110:intron | 30.0% | |
| AAAAAGCCTGTACATAAGAT+TGG | + | chr5_1:15985103-15985122 | Msa0720110:CDS | 30.0% | |
| AAAAGCCTGTACATAAGATT+GGG | + | chr5_1:15985104-15985123 | Msa0720110:CDS | 30.0% | |
| !!! | ACCGTAACATGATTTTTTGT+TGG | + | chr5_1:15985397-15985416 | Msa0720110:three_prime_UTR | 30.0% |
| ! | TTGTATGTTTTCCTGGTTGT+GGG | - | chr5_1:15981489-15981508 | None:intergenic | 35.0% |
| ! | GAAGAAGTTGTATGTTTTCC+TGG | - | chr5_1:15981496-15981515 | None:intergenic | 35.0% |
| AATGTTGCTAAGTGTGTGTT+TGG | + | chr5_1:15981729-15981748 | Msa0720110:intron | 35.0% | |
| !! | AGGACGATGAAAATTGGTTT+TGG | + | chr5_1:15981756-15981775 | Msa0720110:intron | 35.0% |
| ! | TTCTGATAATGCTTCAGAGA+TGG | + | chr5_1:15981928-15981947 | Msa0720110:CDS | 35.0% |
| ! | ACACTAATCCTCTTTTTGAC+AGG | + | chr5_1:15982071-15982090 | Msa0720110:CDS | 35.0% |
| GGTTTAATCCTGTCAAAAAG+AGG | - | chr5_1:15982082-15982101 | None:intergenic | 35.0% | |
| ! | TTTTGACAGGATTAAACCCT+CGG | + | chr5_1:15982084-15982103 | Msa0720110:CDS | 35.0% |
| TTAAACCCTCGGAAACAATA+TGG | + | chr5_1:15982095-15982114 | Msa0720110:CDS | 35.0% | |
| ACAAACCATATTGTTTCCGA+GGG | - | chr5_1:15982103-15982122 | None:intergenic | 35.0% | |
| ! | TGGAATTTTGAACCGTATTG+TGG | + | chr5_1:15982146-15982165 | Msa0720110:intron | 35.0% |
| ! | GGAATTTTGAACCGTATTGT+GGG | + | chr5_1:15982147-15982166 | Msa0720110:intron | 35.0% |
| !! | TGGTTGAATGGTTCTGATTT+GGG | + | chr5_1:15982183-15982202 | Msa0720110:intron | 35.0% |
| ! | AAAACGATCCTGAGTTGAAA+TGG | + | chr5_1:15982247-15982266 | Msa0720110:CDS | 35.0% |
| TATTCATAAGGCTCGTAACT+AGG | + | chr5_1:15982444-15982463 | Msa0720110:intron | 35.0% | |
| GGAGAAATAATTATGCGAAG+TGG | + | chr5_1:15982465-15982484 | Msa0720110:intron | 35.0% | |
| ! | AGCAACTCTTTTGTACTTAG+TGG | - | chr5_1:15982590-15982609 | None:intergenic | 35.0% |
| AACTTATTCCAATCAAACCG+TGG | + | chr5_1:15982613-15982632 | Msa0720110:CDS | 35.0% | |
| ATGACACTTACATGAATCCA+CGG | - | chr5_1:15982633-15982652 | None:intergenic | 35.0% | |
| TATGGATAATCAGTGTCACA+TGG | + | chr5_1:15982943-15982962 | Msa0720110:intron | 35.0% | |
| AGTCGAAGTAACACACATAA+CGG | - | chr5_1:15983002-15983021 | None:intergenic | 35.0% | |
| AAAAGCCATGAATTGCATCA+AGG | - | chr5_1:15983078-15983097 | None:intergenic | 35.0% | |
| !! | TCACAAACCCACTTTTATCA+TGG | - | chr5_1:15983160-15983179 | None:intergenic | 35.0% |
| ! | ATAAAAGTGGGTTTGTGAGT+TGG | + | chr5_1:15983162-15983181 | Msa0720110:intron | 35.0% |
| !!! | TTTGTGAGTTGGTTTTTGGA+GGG | + | chr5_1:15983173-15983192 | Msa0720110:intron | 35.0% |
| TGAACTTTGCCAAAAATGTC+AGG | + | chr5_1:15983249-15983268 | Msa0720110:intron | 35.0% | |
| GAACTTTGCCAAAAATGTCA+GGG | + | chr5_1:15983250-15983269 | Msa0720110:intron | 35.0% | |
| !! | ATAGCTCTAAGATAAACCTC+GGG | - | chr5_1:15983313-15983332 | None:intergenic | 35.0% |
| ! | GCTAATATCTTTCGAGTAAG+GGG | - | chr5_1:15983379-15983398 | None:intergenic | 35.0% |
| ! | CTGTACTTGAAAGCATAAGT+AGG | + | chr5_1:15983565-15983584 | Msa0720110:CDS | 35.0% |
| ! | TTCTGGATACTTTTGTTGCT+AGG | + | chr5_1:15983611-15983630 | Msa0720110:intron | 35.0% |
| TTTATGCAGGATTTACTGTC+TGG | + | chr5_1:15983753-15983772 | Msa0720110:CDS | 35.0% | |
| TCAAAACAAGGTTGGACTAT+TGG | - | chr5_1:15983859-15983878 | None:intergenic | 35.0% | |
| TTCAAGGTTCAAAACAAGGT+TGG | - | chr5_1:15983867-15983886 | None:intergenic | 35.0% | |
| !!! | TGACTCATCTCTTGTTTTCA+AGG | - | chr5_1:15983883-15983902 | None:intergenic | 35.0% |
| TACAAAGATTGTGTGTTGGA+TGG | + | chr5_1:15983934-15983953 | Msa0720110:intron | 35.0% | |
| ACAAAGATTGTGTGTTGGAT+GGG | + | chr5_1:15983935-15983954 | Msa0720110:intron | 35.0% | |
| !! | GGAAATTTTTCAAAACGGTG+TGG | + | chr5_1:15984008-15984027 | Msa0720110:intron | 35.0% |
| AAACAATCTCACGAGTGTTT+AGG | - | chr5_1:15984102-15984121 | None:intergenic | 35.0% | |
| ATACAGATGAAGATTCAGCA+AGG | + | chr5_1:15984296-15984315 | Msa0720110:intron | 35.0% | |
| TACAGATGAAGATTCAGCAA+GGG | + | chr5_1:15984297-15984316 | Msa0720110:intron | 35.0% | |
| AGATGTGGTTGTGAAATTAC+AGG | + | chr5_1:15984369-15984388 | Msa0720110:CDS | 35.0% | |
| GATGTGGTTGTGAAATTACA+GGG | + | chr5_1:15984370-15984389 | Msa0720110:CDS | 35.0% | |
| AATAAATCAGCACAACTACC+TGG | - | chr5_1:15984478-15984497 | None:intergenic | 35.0% | |
| ACTCAAACAGTCAAATGGAT+TGG | - | chr5_1:15984529-15984548 | None:intergenic | 35.0% | |
| TGACTACTCAAACAGTCAAA+TGG | - | chr5_1:15984534-15984553 | None:intergenic | 35.0% | |
| CCCTTAAAACATCAAACTTC+TGG | + | chr5_1:15984575-15984594 | Msa0720110:intron | 35.0% | |
| ! | GCCAGAAGTTTGATGTTTTA+AGG | - | chr5_1:15984579-15984598 | None:intergenic | 35.0% |
| CCCTTAAAACATCAAACTTC+TGG | + | chr5_1:15984575-15984594 | Msa0720110:intron | 35.0% | |
| ! | GCCAGAAGTTTGATGTTTTA+AGG | - | chr5_1:15984579-15984598 | None:intergenic | 35.0% |
| !!! | CAAATTTTTTCAGCAGCAGT+TGG | + | chr5_1:15985243-15985262 | Msa0720110:three_prime_UTR | 35.0% |
| !! | CTTTGTGTTCGATTTTGAGT+AGG | - | chr5_1:15985347-15985366 | None:intergenic | 35.0% |
| CGTTTAATATGTGTGACCAT+TGG | + | chr5_1:15985504-15985523 | Msa0720110:three_prime_UTR | 35.0% | |
| ! | TGTATGTTTTCCTGGTTGTG+GGG | - | chr5_1:15981488-15981507 | None:intergenic | 40.0% |
| ! | GTTGTATGTTTTCCTGGTTG+TGG | - | chr5_1:15981490-15981509 | None:intergenic | 40.0% |
| AACATTTGCAGGGAGAAAGA+GGG | - | chr5_1:15981593-15981612 | None:intergenic | 40.0% | |
| AGTAAGTACCTCGTAAGTTG+TGG | - | chr5_1:15981637-15981656 | None:intergenic | 40.0% | |
| TACAAACAGTAGGAGACAGT+TGG | - | chr5_1:15981663-15981682 | None:intergenic | 40.0% | |
| !! | CTAAGTGTGTGTTTGGTTCT+AGG | + | chr5_1:15981736-15981755 | Msa0720110:intron | 40.0% |
| !! | GGTTCTAGGACGATGAAAAT+TGG | + | chr5_1:15981750-15981769 | Msa0720110:intron | 40.0% |
| CACAAACCATATTGTTTCCG+AGG | - | chr5_1:15982104-15982123 | None:intergenic | 40.0% | |
| ! | TTTTCGCCTTTGTGGTTGAA+TGG | + | chr5_1:15982171-15982190 | Msa0720110:intron | 40.0% |
| TCAGAACCATTCAACCACAA+AGG | - | chr5_1:15982180-15982199 | None:intergenic | 40.0% | |
| !! | GTGGTTGAATGGTTCTGATT+TGG | + | chr5_1:15982182-15982201 | Msa0720110:intron | 40.0% |
| ! | GGATCATCACAGCTTTTGAA+AGG | + | chr5_1:15982306-15982325 | Msa0720110:CDS | 40.0% |
| GGAACATCCATCTATCTTGT+TGG | + | chr5_1:15982327-15982346 | Msa0720110:CDS | 40.0% | |
| GGAATCACCAACAAGATAGA+TGG | - | chr5_1:15982337-15982356 | None:intergenic | 40.0% | |
| !! | CACTTTCTGGTTGATTTCAG+TGG | - | chr5_1:15982358-15982377 | None:intergenic | 40.0% |
| CACTGAAATCAACCAGAAAG+TGG | + | chr5_1:15982356-15982375 | Msa0720110:CDS | 40.0% | |
| CAGAGTTGCACATCAATCAT+AGG | - | chr5_1:15982510-15982529 | None:intergenic | 40.0% | |
| TGATGTGCAACTCTGATCAA+TGG | + | chr5_1:15982515-15982534 | Msa0720110:intron | 40.0% | |
| ACATGAATCCACGGTTTGAT+TGG | - | chr5_1:15982624-15982643 | None:intergenic | 40.0% | |
| TACAAATTGAGGAACCAGTC+TGG | + | chr5_1:15983035-15983054 | Msa0720110:intron | 40.0% | |
| ATGAATTGCATCAAGGACAG+AGG | - | chr5_1:15983071-15983090 | None:intergenic | 40.0% | |
| TCTGTCCTTGATGCAATTCA+TGG | + | chr5_1:15983070-15983089 | Msa0720110:intron | 40.0% | |
| !! | TATCATGGCCAACCACTTTT+GGG | - | chr5_1:15983145-15983164 | None:intergenic | 40.0% |
| ! | TTATCATGGCCAACCACTTT+TGG | - | chr5_1:15983146-15983165 | None:intergenic | 40.0% |
| ! | TGGTTGGCCATGATAAAAGT+GGG | + | chr5_1:15983150-15983169 | Msa0720110:intron | 40.0% |
| !!! | TGGGTTTGTGAGTTGGTTTT+TGG | + | chr5_1:15983169-15983188 | Msa0720110:intron | 40.0% |
| !!! | GTTTGTGAGTTGGTTTTTGG+AGG | + | chr5_1:15983172-15983191 | Msa0720110:intron | 40.0% |
| !!! | AGTTGGTTTTTGGAGGGTTT+TGG | + | chr5_1:15983179-15983198 | Msa0720110:intron | 40.0% |
| !! | TAGCTCTAAGATAAACCTCG+GGG | - | chr5_1:15983312-15983331 | None:intergenic | 40.0% |
| GCAACATTAGGAGGTAAACA+TGG | + | chr5_1:15983698-15983717 | Msa0720110:CDS | 40.0% | |
| CTGCTGGAAGATCTGATAAA+TGG | + | chr5_1:15983723-15983742 | Msa0720110:CDS | 40.0% | |
| AAATGGCGACATCTTTATGC+AGG | + | chr5_1:15983740-15983759 | Msa0720110:CDS | 40.0% | |
| CAAAGATTGTGTGTTGGATG+GGG | + | chr5_1:15983936-15983955 | Msa0720110:intron | 40.0% | |
| AAAGATTGTGTGTTGGATGG+GGG | + | chr5_1:15983937-15983956 | Msa0720110:intron | 40.0% | |
| !! | ATTTTTCAAAACGGTGTGGG+TGG | + | chr5_1:15984012-15984031 | Msa0720110:intron | 40.0% |
| !! | TTTTTCAAAACGGTGTGGGT+GGG | + | chr5_1:15984013-15984032 | Msa0720110:intron | 40.0% |
| CTCGTGAGATTGTTTGAAAG+AGG | + | chr5_1:15984107-15984126 | Msa0720110:intron | 40.0% | |
| TGCATATACGAATGCAGATG+TGG | + | chr5_1:15984354-15984373 | Msa0720110:CDS | 40.0% | |
| TGGTTGTGAAATTACAGGGA+TGG | + | chr5_1:15984374-15984393 | Msa0720110:CDS | 40.0% | |
| GGTTGTGAAATTACAGGGAT+GGG | + | chr5_1:15984375-15984394 | Msa0720110:CDS | 40.0% | |
| TCCTGCTTATGCTAAAAGTG+TGG | + | chr5_1:15984399-15984418 | Msa0720110:CDS | 40.0% | |
| ! | TTATGCTAAAAGTGTGGCAC+AGG | + | chr5_1:15984405-15984424 | Msa0720110:CDS | 40.0% |
| ! | TATGCTAAAAGTGTGGCACA+GGG | + | chr5_1:15984406-15984425 | Msa0720110:CDS | 40.0% |
| CTGGAAGTTTCTTGTCTGAT+AGG | - | chr5_1:15984459-15984478 | None:intergenic | 40.0% | |
| CTATCAGACAAGAAACTTCC+AGG | + | chr5_1:15984457-15984476 | Msa0720110:CDS | 40.0% | |
| GGAGTCTAATGTGACATCAA+GGG | - | chr5_1:15984508-15984527 | None:intergenic | 40.0% | |
| TGGAGTCTAATGTGACATCA+AGG | - | chr5_1:15984509-15984528 | None:intergenic | 40.0% | |
| AAACTTCTGGCCTGATAACT+TGG | + | chr5_1:15984588-15984607 | Msa0720110:intron | 40.0% | |
| AAGCAACTGTCCAAGTTATC+AGG | - | chr5_1:15984601-15984620 | None:intergenic | 40.0% | |
| AAACTTCTGGCCTGATAAGT+TGG | + | chr5_1:15984699-15984718 | Msa0720110:intron | 40.0% | |
| AAGCAACTGTCCAACTTATC+AGG | - | chr5_1:15984712-15984731 | None:intergenic | 40.0% | |
| ! | CCATTTTCATCCCATGTAGA+AGG | - | chr5_1:15985012-15985031 | None:intergenic | 40.0% |
| CCTTCTACATGGGATGAAAA+TGG | + | chr5_1:15985009-15985028 | Msa0720110:intron | 40.0% | |
| GTTCAACTCTGTTATCATGC+AGG | + | chr5_1:15985077-15985096 | Msa0720110:intron | 40.0% | |
| GACATCCCAATCTTATGTAC+AGG | - | chr5_1:15985112-15985131 | None:intergenic | 40.0% | |
| TACATAAGATTGGGATGTCG+TGG | + | chr5_1:15985113-15985132 | Msa0720110:CDS | 40.0% | |
| AAACTTAGCATACAAAGGGG+TGG | - | chr5_1:15985447-15985466 | None:intergenic | 40.0% | |
| GAACATTTGCAGGGAGAAAG+AGG | - | chr5_1:15981594-15981613 | None:intergenic | 45.0% | |
| GCAGTGAAGGAACATTTGCA+GGG | - | chr5_1:15981603-15981622 | None:intergenic | 45.0% | |
| ! | GTAAGTTGTGGTGGAAACAG+GGG | - | chr5_1:15981625-15981644 | None:intergenic | 45.0% |
| ! | CGTAAGTTGTGGTGGAAACA+GGG | - | chr5_1:15981626-15981645 | None:intergenic | 45.0% |
| ! | TCGTAAGTTGTGGTGGAAAC+AGG | - | chr5_1:15981627-15981646 | None:intergenic | 45.0% |
| TGTTTCCACCACAACTTACG+AGG | + | chr5_1:15981626-15981645 | Msa0720110:CDS | 45.0% | |
| AAGTACCTCGTAAGTTGTGG+TGG | - | chr5_1:15981634-15981653 | None:intergenic | 45.0% | |
| AAGGCGAAAAGCCCACAATA+CGG | - | chr5_1:15982161-15982180 | None:intergenic | 45.0% | |
| !! | TGAATGGTTCTGATTTGGGC+AGG | + | chr5_1:15982187-15982206 | Msa0720110:intron | 45.0% |
| ATGTCAGGCCATTTCAACTC+AGG | - | chr5_1:15982258-15982277 | None:intergenic | 45.0% | |
| GTTGAAATGGCCTGACATCA+TGG | + | chr5_1:15982260-15982279 | Msa0720110:CDS | 45.0% | |
| GCCTGACATCATGGAATCAT+GGG | + | chr5_1:15982269-15982288 | Msa0720110:CDS | 45.0% | |
| TCCCATGATTCCATGATGTC+AGG | - | chr5_1:15982273-15982292 | None:intergenic | 45.0% | |
| CACACATAACGGCTACAGAA+AGG | - | chr5_1:15982991-15983010 | None:intergenic | 45.0% | |
| GAGGAGGAAAAAAACCAGAC+TGG | - | chr5_1:15983052-15983071 | None:intergenic | 45.0% | |
| AATTGCATCAAGGACAGAGG+AGG | - | chr5_1:15983068-15983087 | None:intergenic | 45.0% | |
| AATCATTTCAGACCCCATCC+TGG | + | chr5_1:15983116-15983135 | Msa0720110:intron | 45.0% | |
| !!! | ACTTTTGGGTTTCCAGGATG+GGG | - | chr5_1:15983131-15983150 | None:intergenic | 45.0% |
| !!! | CACTTTTGGGTTTCCAGGAT+GGG | - | chr5_1:15983132-15983151 | None:intergenic | 45.0% |
| ! | GTGGTTGGCCATGATAAAAG+TGG | + | chr5_1:15983149-15983168 | Msa0720110:intron | 45.0% |
| !! | TGGTTTTTGGAGGGTTTTGG+AGG | + | chr5_1:15983182-15983201 | Msa0720110:intron | 45.0% |
| !!! | GGTTTTTGGAGGGTTTTGGA+GGG | + | chr5_1:15983183-15983202 | Msa0720110:intron | 45.0% |
| AATCCTAGACTTGCAACCCT+CGG | + | chr5_1:15983278-15983297 | Msa0720110:intron | 45.0% | |
| AGTGCTCTGCTAGTCATGTA+AGG | + | chr5_1:15983666-15983685 | Msa0720110:intron | 45.0% | |
| GTGCTCTGCTAGTCATGTAA+GGG | + | chr5_1:15983667-15983686 | Msa0720110:intron | 45.0% | |
| ! | TTGTCACAGACTGAAGCATC+AGG | + | chr5_1:15983776-15983795 | Msa0720110:CDS | 45.0% |
| AGATGAAGATTCAGCAAGGG+AGG | + | chr5_1:15984300-15984319 | Msa0720110:intron | 45.0% | |
| ! | GCCACACTTTTAGCATAAGC+AGG | - | chr5_1:15984403-15984422 | None:intergenic | 45.0% |
| ! | TTCACTTGATGGATCCCAAC+CGG | - | chr5_1:15985162-15985181 | None:intergenic | 45.0% |
| GTTTCACCACCTTCACTTGA+TGG | - | chr5_1:15985173-15985192 | None:intergenic | 45.0% | |
| AGTGAAGGTGGTGAAACTCT+TGG | + | chr5_1:15985176-15985195 | Msa0720110:CDS | 45.0% | |
| CTCAAGATCGTCACATCCAA+TGG | - | chr5_1:15985523-15985542 | None:intergenic | 45.0% | |
| ! | GTTTTCCTGGTTGTGGGGTT+TGG | - | chr5_1:15981483-15981502 | None:intergenic | 50.0% |
| GAACGCAGCGAGACGAAATT+TGG | - | chr5_1:15981531-15981550 | None:intergenic | 50.0% | |
| GGCAGTGAAGGAACATTTGC+AGG | - | chr5_1:15981604-15981623 | None:intergenic | 50.0% | |
| !! | ACGATCAGAGTGTTGCAGTC+AGG | + | chr5_1:15982028-15982047 | Msa0720110:CDS | 50.0% |
| ! | TTGTGGGCTTTTCGCCTTTG+TGG | + | chr5_1:15982163-15982182 | Msa0720110:intron | 50.0% |
| GGCCTGACATCATGGAATCA+TGG | + | chr5_1:15982268-15982287 | Msa0720110:CDS | 50.0% | |
| ! | CAAGCTCTTCAGCCACTTTC+TGG | - | chr5_1:15982371-15982390 | None:intergenic | 50.0% |
| !! | TGAAGAGCTTGCTACTGGTC+TGG | + | chr5_1:15982380-15982399 | Msa0720110:CDS | 50.0% |
| !! | GAAGAGCTTGCTACTGGTCT+GGG | + | chr5_1:15982381-15982400 | Msa0720110:CDS | 50.0% |
| !! | AAGAGCTTGCTACTGGTCTG+GGG | + | chr5_1:15982382-15982401 | Msa0720110:CDS | 50.0% |
| TGGGCTATTCCTTCCACCAT+AGG | + | chr5_1:15982685-15982704 | Msa0720110:intron | 50.0% | |
| GGGCTATTCCTTCCACCATA+GGG | + | chr5_1:15982686-15982705 | Msa0720110:intron | 50.0% | |
| TGAAGAACCTTGCAGCCCTA+TGG | - | chr5_1:15982704-15982723 | None:intergenic | 50.0% | |
| !!! | CCACTTTTGGGTTTCCAGGA+TGG | - | chr5_1:15983133-15983152 | None:intergenic | 50.0% |
| CCATCCTGGAAACCCAAAAG+TGG | + | chr5_1:15983130-15983149 | Msa0720110:intron | 50.0% | |
| !!! | CCAACCACTTTTGGGTTTCC+AGG | - | chr5_1:15983137-15983156 | None:intergenic | 50.0% |
| CCTGGAAACCCAAAAGTGGT+TGG | + | chr5_1:15983134-15983153 | Msa0720110:intron | 50.0% | |
| TAAGATAAACCTCGGGGCCA+AGG | - | chr5_1:15983306-15983325 | None:intergenic | 50.0% | |
| AAGTACAGTGCCTTCGCCTT+CGG | - | chr5_1:15983553-15983572 | None:intergenic | 50.0% | |
| AGGGCAGCAGTTGCAACATT+AGG | + | chr5_1:15983686-15983705 | Msa0720110:CDS | 50.0% | |
| GCAGCAGTTGCAACATTAGG+AGG | + | chr5_1:15983689-15983708 | Msa0720110:CDS | 50.0% | |
| GATTGGGATGTCGTGGTGAT+TGG | + | chr5_1:15985120-15985139 | Msa0720110:CDS | 50.0% | |
| AAACATCAAACCCCCCGGTT+GGG | + | chr5_1:15985145-15985164 | Msa0720110:CDS | 50.0% | |
| ! | TCACTTGATGGATCCCAACC+GGG | - | chr5_1:15985161-15985180 | None:intergenic | 50.0% |
| GGTTGGGATCCATCAAGTGA+AGG | + | chr5_1:15985161-15985180 | Msa0720110:CDS | 50.0% | |
| TGGGATCCATCAAGTGAAGG+TGG | + | chr5_1:15985164-15985183 | Msa0720110:CDS | 50.0% | |
| AAACCTGAGAGCAGCAGGAG+TGG | - | chr5_1:15981454-15981473 | None:intergenic | 55.0% | |
| GGAAGAAACCTGAGAGCAGC+AGG | - | chr5_1:15981459-15981478 | None:intergenic | 55.0% | |
| TTCCTCCAAACCCCACAACC+AGG | + | chr5_1:15981475-15981494 | Msa0720110:CDS | 55.0% | |
| TTCCTGGTTGTGGGGTTTGG+AGG | - | chr5_1:15981480-15981499 | None:intergenic | 55.0% | |
| !! | GTGGCTGAAGAGCTTGCTAC+TGG | + | chr5_1:15982375-15982394 | Msa0720110:CDS | 55.0% |
| AGAACCTTGCAGCCCTATGG+TGG | - | chr5_1:15982701-15982720 | None:intergenic | 55.0% | |
| GTTCCGAGGGTTGCAAGTCT+AGG | - | chr5_1:15983284-15983303 | None:intergenic | 55.0% | |
| ACTTGCAACCCTCGGAACCT+TGG | + | chr5_1:15983286-15983305 | Msa0720110:intron | 55.0% | |
| ! | ATTCCAGGGCTGCTTGCTGA+AGG | + | chr5_1:15983513-15983532 | Msa0720110:intron | 55.0% |
| ! | GGTTCTGACTCAGTAGCCGA+AGG | + | chr5_1:15983534-15983553 | Msa0720110:CDS | 55.0% |
| !! | GGAGGTAAACATGGTGCTGC+TGG | + | chr5_1:15983707-15983726 | Msa0720110:CDS | 55.0% |
| GTGTGTTGGATGGGGGATTC+AGG | + | chr5_1:15983944-15983963 | Msa0720110:intron | 55.0% | |
| TGTTGGATGGGGGATTCAGG+AGG | + | chr5_1:15983947-15983966 | Msa0720110:intron | 55.0% | |
| GATTCAGGAGGCGAAGAGTG+TGG | + | chr5_1:15983959-15983978 | Msa0720110:intron | 55.0% | |
| TTCAAAACGGTGTGGGTGGG+TGG | + | chr5_1:15984016-15984035 | Msa0720110:intron | 55.0% | |
| TCAAAACGGTGTGGGTGGGT+GGG | + | chr5_1:15984017-15984036 | Msa0720110:intron | 55.0% | |
| TGGCCAAACATCAAACCCCC+CGG | + | chr5_1:15985140-15985159 | Msa0720110:CDS | 55.0% | |
| CAACCGGGGGGTTTGATGTT+TGG | - | chr5_1:15985146-15985165 | None:intergenic | 55.0% | |
| CAAACATCAAACCCCCCGGT+TGG | + | chr5_1:15985144-15985163 | Msa0720110:CDS | 55.0% | |
| ! | ACTTGATGGATCCCAACCGG+GGG | - | chr5_1:15985159-15985178 | None:intergenic | 55.0% |
| ! | CACTTGATGGATCCCAACCG+GGG | - | chr5_1:15985160-15985179 | None:intergenic | 55.0% |
| CTACCACTCCTGCTGCTCTC+AGG | + | chr5_1:15981448-15981467 | Msa0720110:CDS | 60.0% | |
| GGTGGAAACAGGGGCAGTGA+AGG | - | chr5_1:15981616-15981635 | None:intergenic | 60.0% | |
| TCATGGGAATCGCTCGCTGC+TGG | + | chr5_1:15982285-15982304 | Msa0720110:CDS | 60.0% | |
| ! | CCTTGCAGCCCTATGGTGGA+AGG | - | chr5_1:15982697-15982716 | None:intergenic | 60.0% |
| CCTTCCACCATAGGGCTGCA+AGG | + | chr5_1:15982694-15982713 | Msa0720110:intron | 60.0% | |
| GAACCTTCAGCAAGCAGCCC+TGG | - | chr5_1:15983519-15983538 | None:intergenic | 60.0% | |
| GACTCAGTAGCCGAAGGCGA+AGG | + | chr5_1:15983540-15983559 | Msa0720110:CDS | 60.0% | |
| CAAAACGGTGTGGGTGGGTG+GGG | + | chr5_1:15984018-15984037 | Msa0720110:intron | 60.0% | |
| AAAACGGTGTGGGTGGGTGG+GGG | + | chr5_1:15984019-15984038 | Msa0720110:intron | 60.0% | |
| ! | CTTGATGGATCCCAACCGGG+GGG | - | chr5_1:15985158-15985177 | None:intergenic | 60.0% |
| CCTCGGGGCCAAGGTTCCGA+GGG | - | chr5_1:15983297-15983316 | None:intergenic | 70.0% | |
| ACCTCGGGGCCAAGGTTCCG+AGG | - | chr5_1:15983298-15983317 | None:intergenic | 70.0% | |
| CCCTCGGAACCTTGGCCCCG+AGG | + | chr5_1:15983294-15983313 | Msa0720110:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15981338 | 15985566 | 15981338 | ID=Msa0720110;Name=Msa0720110 |
| chr5_1 | mRNA | 15981338 | 15985566 | 15981338 | ID=Msa0720110-mRNA-1;Parent=Msa0720110;Name=Msa0720110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=61|1|1|1|1|1|8|358|389 |
| chr5_1 | exon | 15981338 | 15981647 | 15981338 | ID=Msa0720110-mRNA-1:exon:6125;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15981926 | 15982116 | 15981926 | ID=Msa0720110-mRNA-1:exon:6126;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15982209 | 15982403 | 15982209 | ID=Msa0720110-mRNA-1:exon:6127;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15982580 | 15982641 | 15982580 | ID=Msa0720110-mRNA-1:exon:6128;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15983520 | 15983586 | 15983520 | ID=Msa0720110-mRNA-1:exon:6129;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15983679 | 15983797 | 15983679 | ID=Msa0720110-mRNA-1:exon:6130;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15984302 | 15984478 | 15984302 | ID=Msa0720110-mRNA-1:exon:6131;Parent=Msa0720110-mRNA-1 |
| chr5_1 | exon | 15985099 | 15985566 | 15985099 | ID=Msa0720110-mRNA-1:exon:6132;Parent=Msa0720110-mRNA-1 |
| chr5_1 | five_prime_UTR | 15981338 | 15981398 | 15981338 | ID=Msa0720110-mRNA-1:five_prime_utr;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15981399 | 15981647 | 15981399 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15981926 | 15982116 | 15981926 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15982209 | 15982403 | 15982209 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15982580 | 15982641 | 15982580 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15983520 | 15983586 | 15983520 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15983679 | 15983797 | 15983679 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15984302 | 15984478 | 15984302 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | CDS | 15985099 | 15985208 | 15985099 | ID=Msa0720110-mRNA-1:cds;Parent=Msa0720110-mRNA-1 |
| chr5_1 | three_prime_UTR | 15985209 | 15985566 | 15985209 | ID=Msa0720110-mRNA-1:three_prime_utr;Parent=Msa0720110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
