AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720440 MtrunA17_Chr5g0411151 98.734 237 3 0 1 237 1 237 1.55e-180 494
Msa0720440 MtrunA17_Chr8g0366581 85.294 238 31 3 1 237 1 235 5.84e-142 396
Msa0720440 MtrunA17_Chr4g0040071 73.500 200 51 1 33 232 13 210 7.61e-110 315
Msa0720440 MtrunA17_Chr5g0395181 70.283 212 54 3 21 232 7 209 1.17e-107 309
Msa0720440 MtrunA17_Chr1g0179781 54.680 203 79 4 35 231 7 202 6.08e-72 218
Msa0720440 MtrunA17_Chr7g0265291 58.000 200 78 3 35 231 7 203 1.99e-70 214
Msa0720440 MtrunA17_Chr4g0020811 48.227 141 63 3 31 161 2 142 5.61e-42 140
Msa0720440 MtrunA17_Chr2g0308401 50.735 136 57 4 36 161 5 140 5.64e-42 140
Msa0720440 MtrunA17_Chr2g0320521 36.000 225 114 5 36 230 7 231 9.93e-41 139
Msa0720440 MtrunA17_Chr7g0230511 34.979 243 112 5 32 230 6 246 1.94e-38 134
Msa0720440 MtrunA17_Chr2g0297251 35.088 228 109 5 35 230 37 257 4.13e-37 130
Msa0720440 MtrunA17_Chr4g0065041 45.185 135 73 1 35 169 8 141 1.19e-35 127
Msa0720440 MtrunA17_Chr2g0320561 47.183 142 65 4 36 167 5 146 2.06e-35 126
Msa0720440 MtrunA17_Chr2g0320551 44.853 136 65 3 36 161 5 140 3.17e-34 120
Msa0720440 MtrunA17_Chr4g0052451 43.902 82 40 1 87 162 11 92 1.10e-19 80.9
Msa0720440 MtrunA17_Chr8g0392151 35.616 146 71 5 37 161 15 158 9.67e-18 79.3
Msa0720440 MtrunA17_Chr8g0386511 31.677 161 95 6 74 230 4 153 2.11e-15 71.2
Msa0720440 MtrunA17_Chr5g0434331 25.248 202 107 8 35 230 43 206 3.25e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720440 AT4G17900.1 74.249 233 52 4 1 231 1 227 4.12e-126 357
Msa0720440 AT4G17900.2 73.762 202 46 3 32 231 17 213 9.18e-107 307
Msa0720440 AT1G32700.1 72.093 215 55 2 25 237 2 213 4.28e-105 303
Msa0720440 AT1G32700.2 73.446 177 42 2 63 237 1 174 1.60e-82 244
Msa0720440 AT5G46710.1 53.191 235 95 6 1 230 1 225 1.48e-80 241
Msa0720440 AT1G21000.2 48.750 240 84 4 28 230 6 243 3.96e-76 230
Msa0720440 AT1G21000.1 48.750 240 84 4 28 230 9 246 4.51e-76 230
Msa0720440 AT5G46710.3 52.404 208 91 4 28 230 5 209 7.20e-73 221
Msa0720440 AT1G76590.1 49.130 230 81 2 35 230 18 245 5.97e-72 220
Msa0720440 AT5G46710.2 60.494 162 56 3 1 161 1 155 4.37e-68 207
Msa0720440 AT1G43000.2 47.907 215 100 2 28 230 9 223 6.32e-68 209
Msa0720440 AT1G43000.1 47.907 215 100 2 28 230 2 216 7.57e-68 208
Msa0720440 AT2G27930.1 45.673 208 81 5 35 232 4 189 3.70e-52 167
Msa0720440 AT2G27930.4 45.673 208 81 5 35 232 4 189 3.70e-52 167
Msa0720440 AT2G27930.3 54.745 137 52 2 35 161 4 140 2.29e-47 154
Msa0720440 AT2G27930.2 54.745 137 52 2 35 161 4 140 2.29e-47 154
Msa0720440 AT2G12646.3 46.667 135 71 1 35 169 3 136 1.60e-36 129
Msa0720440 AT2G12646.1 46.667 135 71 1 35 169 6 139 1.80e-36 129
Msa0720440 AT2G12646.2 46.667 135 71 1 35 169 6 139 1.80e-36 129
Msa0720440 AT1G31040.1 35.398 226 114 4 35 230 19 242 2.26e-36 129
Msa0720440 AT3G60670.1 45.455 132 71 1 30 161 2 132 1.50e-34 124
Msa0720440 AT2G27930.5 47.403 154 50 4 88 232 61 192 3.87e-34 121
Msa0720440 AT2G27930.6 47.403 154 50 4 88 232 61 192 3.87e-34 121
Msa0720440 AT2G01818.1 33.953 215 115 9 37 230 13 221 2.06e-21 89.4
Msa0720440 AT2G01818.2 33.766 154 80 7 94 230 9 157 3.26e-11 60.5

Find 87 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAGAAGCAGAGAAAT+AGG 0.160708 5_1:+16445855 None:intergenic
ACCATGATTCTCCTGTTCTT+TGG 0.256621 5_1:+16445709 None:intergenic
TGCATTAGTATATATATATC+AGG 0.262495 5_1:+16444095 None:intergenic
AAAATGTACTCCTTGGAAAA+AGG 0.303792 5_1:-16443778 Msa0720440:three_prime_UTR
GTGGTTGATGTTGTAAATAT+TGG 0.308658 5_1:-16443829 Msa0720440:three_prime_UTR
TGGTATTCCCTTTCTTCTCT+TGG 0.322835 5_1:+16444192 None:intergenic
TGGTTTGATTTCTCTGACAC+TGG 0.330907 5_1:+16445729 None:intergenic
AAAGGTGCTATATCTAAATA+TGG 0.332200 5_1:-16443760 Msa0720440:three_prime_UTR
GTAAATATTGGGTTAGTAAG+TGG 0.336700 5_1:-16443817 Msa0720440:three_prime_UTR
TCCTTCCGGTTCTGTTCTCT+TGG 0.350274 5_1:-16444870 Msa0720440:CDS
CAAAGACCACCGTTACATTC+AGG 0.356801 5_1:-16445386 Msa0720440:intron
TTCTGTAATTAACTGAAGTT+GGG 0.357223 5_1:+16444218 None:intergenic
GAGAGAGAAGCAGAGAAATA+GGG 0.369849 5_1:+16445856 None:intergenic
AAGAAGAGTGAGGGAGGGAA+TGG 0.371714 5_1:+16445904 None:intergenic
TGGTTGATGTTGTAAATATT+GGG 0.372886 5_1:-16443828 Msa0720440:three_prime_UTR
AATTGCCATTGGTGTGTGTT+TGG 0.376749 5_1:+16445768 None:intergenic
GTAGCCTTCTTGATTCCTTC+CGG 0.377067 5_1:-16444884 Msa0720440:CDS
TAAATATTGGGTTAGTAAGT+GGG 0.381932 5_1:-16443816 Msa0720440:three_prime_UTR
CAGAAACACTTGGACATTGC+TGG 0.382483 5_1:-16445011 Msa0720440:CDS
GGGAGGGAATGGGTTCTTGT+AGG 0.392567 5_1:+16445915 None:intergenic
GTTCTGTAATTAACTGAAGT+TGG 0.401937 5_1:+16444217 None:intergenic
CTTCATACCATGATGTGATA+AGG 0.416229 5_1:-16445046 Msa0720440:CDS
AAACTTAGGTATAATTACTT+TGG 0.428168 5_1:+16443853 None:intergenic
TGAATGTAATATGTATTGTT+TGG 0.429253 5_1:-16445452 Msa0720440:CDS
CCTTGCACTGTTGATAATGT+AGG 0.430360 5_1:+16444980 None:intergenic
TATTGTTTGGATTGTATGAA+TGG 0.430470 5_1:-16445439 Msa0720440:CDS
GAATGGGTTCTTGTAGGTCT+TGG 0.431791 5_1:+16445921 None:intergenic
TTCAAATGCGGTCGAACAAT+GGG 0.441690 5_1:+16443684 None:intergenic
CTAAGAACTTCCAGAAGAAA+AGG 0.442353 5_1:-16444351 Msa0720440:CDS
GAGAAATCAAACCAAAGAAC+AGG 0.443596 5_1:-16445720 Msa0720440:CDS
ATACCACATAGAGCCCCATT+GGG 0.447453 5_1:-16444175 Msa0720440:CDS
GGAAATGAAAATGTACTCCT+TGG 0.450242 5_1:-16443785 Msa0720440:three_prime_UTR
TTCATACCATGATGTGATAA+GGG 0.458976 5_1:-16445045 Msa0720440:CDS
CAACATCAACCACAAAACTT+AGG 0.464632 5_1:+16443839 None:intergenic
AATCCAAATAGAAGTGGAAA+AGG 0.476100 5_1:-16444002 Msa0720440:three_prime_UTR
GTTCTGTTCTCTTGGTTGCA+AGG 0.482122 5_1:-16444862 Msa0720440:intron
TGCAACCAAGAGAACAGAAC+CGG 0.486127 5_1:+16444865 None:intergenic
AGAACAGCCAAGAGAAGAAA+GGG 0.492152 5_1:-16444199 Msa0720440:CDS
AGAAGAGTGAGGGAGGGAAT+GGG 0.492224 5_1:+16445905 None:intergenic
CAGAACAGCCAAGAGAAGAA+AGG 0.499241 5_1:-16444200 Msa0720440:CDS
GAATGTAACGGTGGTCTTTG+TGG 0.500381 5_1:+16445389 None:intergenic
TTTCAAATGCGGTCGAACAA+TGG 0.519380 5_1:+16443683 None:intergenic
AATAGAAGTGGAAAAGGTTG+AGG 0.522137 5_1:-16443996 Msa0720440:three_prime_UTR
CATCTGTTATCATCATCATC+AGG 0.523367 5_1:+16445550 None:intergenic
AAATATTGGGTTAGTAAGTG+GGG 0.528583 5_1:-16443815 Msa0720440:three_prime_UTR
CCTCAACCAAGGCCAGGAAA+AGG 0.529589 5_1:-16444936 Msa0720440:CDS
GCATTAGTATATATATATCA+GGG 0.535134 5_1:+16444096 None:intergenic
AATACCACATAGAGCCCCAT+TGG 0.536612 5_1:-16444176 Msa0720440:CDS
TTCAACAATGGTTTCAACCA+TGG 0.537430 5_1:+16445523 None:intergenic
GGGTTGTGTTCTTGAATGAA+AGG 0.538393 5_1:-16444959 Msa0720440:CDS
GAAGTAAAGAAGAGTGAGGG+AGG 0.538528 5_1:+16445898 None:intergenic
TGCACCACCAACTATTTCAC+AGG 0.545032 5_1:+16443954 None:intergenic
AAGTAAAGAAGAGTGAGGGA+GGG 0.545559 5_1:+16445899 None:intergenic
AAGAAAGCTTCTTTCAACAA+TGG 0.545716 5_1:+16445511 None:intergenic
TTGAGAAGTAAAGAAGAGTG+AGG 0.545760 5_1:+16445894 None:intergenic
CATTCACCCTTATCACATCA+TGG 0.546598 5_1:+16445039 None:intergenic
ACCAAAGAACAGGAGAATCA+TGG 0.546667 5_1:-16445710 Msa0720440:intron
TATGGTTTGAACAGATTAGG+AGG 0.550366 5_1:-16445070 Msa0720440:intron
GAATGTGAATTGCAGATTGT+GGG 0.552420 5_1:-16444379 Msa0720440:intron
AAAGACACCTGTGAAATAGT+TGG 0.556251 5_1:-16443961 Msa0720440:three_prime_UTR
GAAAGGCCTCAACCAAGGCC+AGG 0.557056 5_1:-16444942 Msa0720440:CDS
CCTACATTATCAACAGTGCA+AGG 0.564703 5_1:-16444980 Msa0720440:CDS
TGAGAAGTAAAGAAGAGTGA+GGG 0.572177 5_1:+16445895 None:intergenic
AAGGAGACAATTAACAGCAA+TGG 0.585369 5_1:-16444332 Msa0720440:CDS
GTTCTTGTAGGTCTTGGAAG+CGG 0.606379 5_1:+16445927 None:intergenic
AGCAATGGCATCAGATTCTG+AGG 0.610535 5_1:-16444317 Msa0720440:CDS
TCAAACCAAACACACACCAA+TGG 0.622465 5_1:-16445773 Msa0720440:exon
AACAATGGTTTCAACCATGG+TGG 0.622605 5_1:+16445526 None:intergenic
GAATGAGATTCAGAAACACT+TGG 0.628209 5_1:-16445021 Msa0720440:CDS
AATATTGGGTTAGTAAGTGG+GGG 0.637836 5_1:-16443814 Msa0720440:three_prime_UTR
GAAGACAAACCTGAATGTAA+CGG 0.653422 5_1:+16445377 None:intergenic
TGAATGAAAGGCCTCAACCA+AGG 0.654295 5_1:-16444947 Msa0720440:CDS
AGAACCGGAAGGAATCAAGA+AGG 0.656588 5_1:+16444880 None:intergenic
CTACATTATCAACAGTGCAA+GGG 0.657965 5_1:-16444979 Msa0720440:CDS
ACCACATAGAGCCCCATTGG+GGG 0.661326 5_1:-16444173 Msa0720440:CDS
TACCACATAGAGCCCCATTG+GGG 0.680294 5_1:-16444174 Msa0720440:CDS
CCACATAGAGCCCCATTGGG+GGG 0.682285 5_1:-16444172 Msa0720440:CDS
GACACCTGTGAAATAGTTGG+TGG 0.682466 5_1:-16443958 Msa0720440:three_prime_UTR
ATGATAACAGATGGCCACCA+TGG 0.683499 5_1:-16445540 Msa0720440:CDS
ACCAAGAGAACAGAACCGGA+AGG 0.684862 5_1:+16444869 None:intergenic
TCTGTAATTAACTGAAGTTG+GGG 0.688523 5_1:+16444219 None:intergenic
AATGTGAATTGCAGATTGTG+GGG 0.690938 5_1:-16444378 Msa0720440:intron
CATTAGTATATATATATCAG+GGG 0.691779 5_1:+16444097 None:intergenic
CTGATGATGATGATAACAGA+TGG 0.692210 5_1:-16445549 Msa0720440:CDS
GACAAACCTGAATGTAACGG+TGG 0.716496 5_1:+16445380 None:intergenic
GCAAGACAGAGAGAACAGAG+AGG 0.742658 5_1:+16445415 None:intergenic
CTGTAATTAACTGAAGTTGG+GGG 0.746847 5_1:+16444220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTGATTTTTGGTTT+GGG - chr5_1:16443983-16444002 Msa0720440:three_prime_UTR 15.0%
!!! TTTTTATTGATTTTTGGTTT+GGG - chr5_1:16443983-16444002 Msa0720440:three_prime_UTR 15.0%
!!! GTTCTGTTTTTATTGATTTT+TGG - chr5_1:16443977-16443996 Msa0720440:three_prime_UTR 20.0%
!!! GTTTTTATTGATTTTTGGTT+TGG - chr5_1:16443982-16444001 Msa0720440:three_prime_UTR 20.0%
!! TGAATGTAATATGTATTGTT+TGG - chr5_1:16444128-16444147 Msa0720440:three_prime_UTR 20.0%
!!! CTAAAGTTTGTTTTTTTGTA+TGG - chr5_1:16444492-16444511 Msa0720440:intron 20.0%
!! AATAATTGATGAGAATACAT+TGG + chr5_1:16444772-16444791 None:intergenic 20.0%
!!! CTAGTAAAGAAACTTTTTAT+GGG - chr5_1:16444977-16444996 Msa0720440:CDS 20.0%
!! AACACATAATAGTTATGATT+TGG + chr5_1:16445153-16445172 None:intergenic 20.0%
!! CATTAGTATATATATATCAG+GGG + chr5_1:16445486-16445505 None:intergenic 20.0%
!! GCATTAGTATATATATATCA+GGG + chr5_1:16445487-16445506 None:intergenic 20.0%
!! TGCATTAGTATATATATATC+AGG + chr5_1:16445488-16445507 None:intergenic 20.0%
!!! AAGTAAGTCTCTTTTAATAT+AGG - chr5_1:16445695-16445714 Msa0720440:intron 20.0%
!! AAACTTAGGTATAATTACTT+TGG + chr5_1:16445730-16445749 None:intergenic 20.0%
!!! GTTCTGTTTTTATTGATTTT+TGG - chr5_1:16443977-16443996 Msa0720440:three_prime_UTR 20.0%
!!! GTTTTTATTGATTTTTGGTT+TGG - chr5_1:16443982-16444001 Msa0720440:three_prime_UTR 20.0%
!! TGAATGTAATATGTATTGTT+TGG - chr5_1:16444128-16444147 Msa0720440:three_prime_UTR 20.0%
!!! CTAAAGTTTGTTTTTTTGTA+TGG - chr5_1:16444492-16444511 Msa0720440:intron 20.0%
!! AATAATTGATGAGAATACAT+TGG + chr5_1:16444772-16444791 None:intergenic 20.0%
!!! CTAGTAAAGAAACTTTTTAT+GGG - chr5_1:16444977-16444996 Msa0720440:CDS 20.0%
!! AACACATAATAGTTATGATT+TGG + chr5_1:16445153-16445172 None:intergenic 20.0%
!! CATTAGTATATATATATCAG+GGG + chr5_1:16445486-16445505 None:intergenic 20.0%
!! GCATTAGTATATATATATCA+GGG + chr5_1:16445487-16445506 None:intergenic 20.0%
!! TGCATTAGTATATATATATC+AGG + chr5_1:16445488-16445507 None:intergenic 20.0%
!!! AAGTAAGTCTCTTTTAATAT+AGG - chr5_1:16445695-16445714 Msa0720440:intron 20.0%
!! AAACTTAGGTATAATTACTT+TGG + chr5_1:16445730-16445749 None:intergenic 20.0%
! ATTTAGCATTAGATTCTTGA+TGG - chr5_1:16443901-16443920 Msa0720440:three_prime_UTR 25.0%
! TTTAGCATTAGATTCTTGAT+GGG - chr5_1:16443902-16443921 Msa0720440:three_prime_UTR 25.0%
! TATTGTTTGGATTGTATGAA+TGG - chr5_1:16444141-16444160 Msa0720440:exon 25.0%
!! CTTATAATCTGACACATTTT+TGG - chr5_1:16444271-16444290 Msa0720440:CDS 25.0%
!! TTATAGATTCGTTCTTTTTC+TGG - chr5_1:16444306-16444325 Msa0720440:CDS 25.0%
!! TATAGATTCGTTCTTTTTCT+GGG - chr5_1:16444307-16444326 Msa0720440:CDS 25.0%
!! ATCTAAGTGTTATTCTGAAA+TGG - chr5_1:16444372-16444391 Msa0720440:intron 25.0%
!!! TCTAAGTGTTATTCTGAAAT+GGG - chr5_1:16444373-16444392 Msa0720440:intron 25.0%
! AATTAGACATTAGACATCAA+TGG + chr5_1:16444466-16444485 None:intergenic 25.0%
!! GCTAGTAAAGAAACTTTTTA+TGG - chr5_1:16444976-16444995 Msa0720440:CDS 25.0%
! TGTGCAAAAGATTAAATTGA+AGG + chr5_1:16445069-16445088 None:intergenic 25.0%
! TTCTGTAATTAACTGAAGTT+GGG + chr5_1:16445365-16445384 None:intergenic 25.0%
!! GTAATTATACCTAAGTTTTG+TGG - chr5_1:16445732-16445751 Msa0720440:CDS 25.0%
!! TGGTTGATGTTGTAAATATT+GGG - chr5_1:16445752-16445771 Msa0720440:CDS 25.0%
!!! TAAATATTGGGTTAGTAAGT+GGG - chr5_1:16445764-16445783 Msa0720440:exon 25.0%
!!! AAAGGTGCTATATCTAAATA+TGG - chr5_1:16445820-16445839 Msa0720440:five_prime_UTR 25.0%
!! CTTTGTAAAGTTTTCAAATG+CGG + chr5_1:16445911-16445930 None:intergenic 25.0%
! ATTTAGCATTAGATTCTTGA+TGG - chr5_1:16443901-16443920 Msa0720440:three_prime_UTR 25.0%
! TTTAGCATTAGATTCTTGAT+GGG - chr5_1:16443902-16443921 Msa0720440:three_prime_UTR 25.0%
! TATTGTTTGGATTGTATGAA+TGG - chr5_1:16444141-16444160 Msa0720440:exon 25.0%
!! CTTATAATCTGACACATTTT+TGG - chr5_1:16444271-16444290 Msa0720440:CDS 25.0%
!! TTATAGATTCGTTCTTTTTC+TGG - chr5_1:16444306-16444325 Msa0720440:CDS 25.0%
!! TATAGATTCGTTCTTTTTCT+GGG - chr5_1:16444307-16444326 Msa0720440:CDS 25.0%
!! ATCTAAGTGTTATTCTGAAA+TGG - chr5_1:16444372-16444391 Msa0720440:intron 25.0%
!!! TCTAAGTGTTATTCTGAAAT+GGG - chr5_1:16444373-16444392 Msa0720440:intron 25.0%
! AATTAGACATTAGACATCAA+TGG + chr5_1:16444466-16444485 None:intergenic 25.0%
!! GCTAGTAAAGAAACTTTTTA+TGG - chr5_1:16444976-16444995 Msa0720440:CDS 25.0%
! TGTGCAAAAGATTAAATTGA+AGG + chr5_1:16445069-16445088 None:intergenic 25.0%
! TTCTGTAATTAACTGAAGTT+GGG + chr5_1:16445365-16445384 None:intergenic 25.0%
!! GTAATTATACCTAAGTTTTG+TGG - chr5_1:16445732-16445751 Msa0720440:CDS 25.0%
!! TGGTTGATGTTGTAAATATT+GGG - chr5_1:16445752-16445771 Msa0720440:CDS 25.0%
!!! TAAATATTGGGTTAGTAAGT+GGG - chr5_1:16445764-16445783 Msa0720440:exon 25.0%
!!! AAAGGTGCTATATCTAAATA+TGG - chr5_1:16445820-16445839 Msa0720440:five_prime_UTR 25.0%
!! CTTTGTAAAGTTTTCAAATG+CGG + chr5_1:16445911-16445930 None:intergenic 25.0%
! TCTTGATTTTCAATTGCCAT+TGG + chr5_1:16443826-16443845 None:intergenic 30.0%
!!! TTGGTTTGGGATTTTTGAAT+AGG - chr5_1:16443996-16444015 Msa0720440:three_prime_UTR 30.0%
!! TGGTTTGGGATTTTTGAATA+GGG - chr5_1:16443997-16444016 Msa0720440:three_prime_UTR 30.0%
AAGAAAGCTTCTTTCAACAA+TGG + chr5_1:16444072-16444091 None:intergenic 30.0%
AATAGCTGAAAATCAGCAAA+AGG + chr5_1:16444416-16444435 None:intergenic 30.0%
TTGTATGGTTTGAACAGATT+AGG - chr5_1:16444507-16444526 Msa0720440:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr5_1:16444535-16444554 Msa0720440:intron 30.0%
AATTGATGAGAATACATTGG+TGG + chr5_1:16444769-16444788 None:intergenic 30.0%
! TGCACTATAACAATGTTTTG+TGG - chr5_1:16444864-16444883 Msa0720440:CDS 30.0%
! ACTATAACAATGTTTTGTGG+CGG - chr5_1:16444867-16444886 Msa0720440:CDS 30.0%
!!! TGAGGTTGACTTTTTCATAA+TGG - chr5_1:16445014-16445033 Msa0720440:CDS 30.0%
!!! GAGGTTGACTTTTTCATAAT+GGG - chr5_1:16445015-16445034 Msa0720440:CDS 30.0%
! TTCAAAGCATTAAACAACCA+TGG - chr5_1:16445095-16445114 Msa0720440:intron 30.0%
! TCAAAGCATTAAACAACCAT+GGG - chr5_1:16445096-16445115 Msa0720440:intron 30.0%
AAGTCAATATTCAAATCCCA+TGG + chr5_1:16445115-16445134 None:intergenic 30.0%
! AGTTATGATTTGGACAAAGA+TGG + chr5_1:16445143-16445162 None:intergenic 30.0%
! TTAATTGTCTCCTTTTCTTC+TGG + chr5_1:16445242-16445261 None:intergenic 30.0%
!! GAACTTTGATTTTCTTCTGA+CGG + chr5_1:16445317-16445336 None:intergenic 30.0%
TCTGTAATTAACTGAAGTTG+GGG + chr5_1:16445364-16445383 None:intergenic 30.0%
GTTCTGTAATTAACTGAAGT+TGG + chr5_1:16445366-16445385 None:intergenic 30.0%
TGCAAAAATCCAAATAGAAG+TGG - chr5_1:16445572-16445591 Msa0720440:intron 30.0%
AATCCAAATAGAAGTGGAAA+AGG - chr5_1:16445578-16445597 Msa0720440:intron 30.0%
GTGCATTTAGCAAAAAGAAT+GGG - chr5_1:16445644-16445663 Msa0720440:intron 30.0%
TGCATTTAGCAAAAAGAATG+GGG - chr5_1:16445645-16445664 Msa0720440:intron 30.0%
! GTGGTTGATGTTGTAAATAT+TGG - chr5_1:16445751-16445770 Msa0720440:CDS 30.0%
!! GTAAATATTGGGTTAGTAAG+TGG - chr5_1:16445763-16445782 Msa0720440:exon 30.0%
!! AAATATTGGGTTAGTAAGTG+GGG - chr5_1:16445765-16445784 Msa0720440:exon 30.0%
AAAATGTACTCCTTGGAAAA+AGG - chr5_1:16445802-16445821 Msa0720440:five_prime_UTR 30.0%
! TCTTGATTTTCAATTGCCAT+TGG + chr5_1:16443826-16443845 None:intergenic 30.0%
!!! TTGGTTTGGGATTTTTGAAT+AGG - chr5_1:16443996-16444015 Msa0720440:three_prime_UTR 30.0%
!! TGGTTTGGGATTTTTGAATA+GGG - chr5_1:16443997-16444016 Msa0720440:three_prime_UTR 30.0%
AAGAAAGCTTCTTTCAACAA+TGG + chr5_1:16444072-16444091 None:intergenic 30.0%
AATAGCTGAAAATCAGCAAA+AGG + chr5_1:16444416-16444435 None:intergenic 30.0%
TTGTATGGTTTGAACAGATT+AGG - chr5_1:16444507-16444526 Msa0720440:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr5_1:16444535-16444554 Msa0720440:intron 30.0%
AATTGATGAGAATACATTGG+TGG + chr5_1:16444769-16444788 None:intergenic 30.0%
! TGCACTATAACAATGTTTTG+TGG - chr5_1:16444864-16444883 Msa0720440:CDS 30.0%
! ACTATAACAATGTTTTGTGG+CGG - chr5_1:16444867-16444886 Msa0720440:CDS 30.0%
!!! TGAGGTTGACTTTTTCATAA+TGG - chr5_1:16445014-16445033 Msa0720440:CDS 30.0%
!!! GAGGTTGACTTTTTCATAAT+GGG - chr5_1:16445015-16445034 Msa0720440:CDS 30.0%
! TTCAAAGCATTAAACAACCA+TGG - chr5_1:16445095-16445114 Msa0720440:intron 30.0%
! TCAAAGCATTAAACAACCAT+GGG - chr5_1:16445096-16445115 Msa0720440:intron 30.0%
AAGTCAATATTCAAATCCCA+TGG + chr5_1:16445115-16445134 None:intergenic 30.0%
! AGTTATGATTTGGACAAAGA+TGG + chr5_1:16445143-16445162 None:intergenic 30.0%
! TTAATTGTCTCCTTTTCTTC+TGG + chr5_1:16445242-16445261 None:intergenic 30.0%
!! GAACTTTGATTTTCTTCTGA+CGG + chr5_1:16445317-16445336 None:intergenic 30.0%
TCTGTAATTAACTGAAGTTG+GGG + chr5_1:16445364-16445383 None:intergenic 30.0%
GTTCTGTAATTAACTGAAGT+TGG + chr5_1:16445366-16445385 None:intergenic 30.0%
TGCAAAAATCCAAATAGAAG+TGG - chr5_1:16445572-16445591 Msa0720440:intron 30.0%
AATCCAAATAGAAGTGGAAA+AGG - chr5_1:16445578-16445597 Msa0720440:intron 30.0%
GTGCATTTAGCAAAAAGAAT+GGG - chr5_1:16445644-16445663 Msa0720440:intron 30.0%
TGCATTTAGCAAAAAGAATG+GGG - chr5_1:16445645-16445664 Msa0720440:intron 30.0%
! GTGGTTGATGTTGTAAATAT+TGG - chr5_1:16445751-16445770 Msa0720440:CDS 30.0%
!! GTAAATATTGGGTTAGTAAG+TGG - chr5_1:16445763-16445782 Msa0720440:exon 30.0%
!! AAATATTGGGTTAGTAAGTG+GGG - chr5_1:16445765-16445784 Msa0720440:exon 30.0%
AAAATGTACTCCTTGGAAAA+AGG - chr5_1:16445802-16445821 Msa0720440:five_prime_UTR 30.0%
TGAGAAGTAAAGAAGAGTGA+GGG + chr5_1:16443688-16443707 None:intergenic 35.0%
TTGAGAAGTAAAGAAGAGTG+AGG + chr5_1:16443689-16443708 None:intergenic 35.0%
GTGAAAAAGTGAACGATGTT+TGG + chr5_1:16443778-16443797 None:intergenic 35.0%
GAGAAATCAAACCAAAGAAC+AGG - chr5_1:16443860-16443879 Msa0720440:three_prime_UTR 35.0%
CATCTGTTATCATCATCATC+AGG + chr5_1:16444033-16444052 None:intergenic 35.0%
! CTGATGATGATGATAACAGA+TGG - chr5_1:16444031-16444050 Msa0720440:three_prime_UTR 35.0%
TTCAACAATGGTTTCAACCA+TGG + chr5_1:16444060-16444079 None:intergenic 35.0%
GAAGACAAACCTGAATGTAA+CGG + chr5_1:16444206-16444225 None:intergenic 35.0%
!!! TCTGACACATTTTTGGTTCA+TGG - chr5_1:16444278-16444297 Msa0720440:CDS 35.0%
!!! CTGACACATTTTTGGTTCAT+GGG - chr5_1:16444279-16444298 Msa0720440:CDS 35.0%
TATGGTTTGAACAGATTAGG+AGG - chr5_1:16444510-16444529 Msa0720440:intron 35.0%
CTTCATACCATGATGTGATA+AGG - chr5_1:16444534-16444553 Msa0720440:intron 35.0%
GAATGAGATTCAGAAACACT+TGG - chr5_1:16444559-16444578 Msa0720440:intron 35.0%
CTACATTATCAACAGTGCAA+GGG - chr5_1:16444601-16444620 Msa0720440:intron 35.0%
CTGAACAAATCGCTATTGTT+CGG - chr5_1:16444804-16444823 Msa0720440:intron 35.0%
TGGGTTAAAATGAGTTGTTG+AGG - chr5_1:16444996-16445015 Msa0720440:CDS 35.0%
TGAATGTGAATTGCAGATTG+TGG - chr5_1:16445200-16445219 Msa0720440:intron 35.0%
GAATGTGAATTGCAGATTGT+GGG - chr5_1:16445201-16445220 Msa0720440:intron 35.0%
AATGTGAATTGCAGATTGTG+GGG - chr5_1:16445202-16445221 Msa0720440:intron 35.0%
CTAAGAACTTCCAGAAGAAA+AGG - chr5_1:16445229-16445248 Msa0720440:intron 35.0%
AAGGAGACAATTAACAGCAA+TGG - chr5_1:16445248-16445267 Msa0720440:intron 35.0%
CTGTAATTAACTGAAGTTGG+GGG + chr5_1:16445363-16445382 None:intergenic 35.0%
! CAACCTTTTCCACTTCTATT+TGG + chr5_1:16445584-16445603 None:intergenic 35.0%
AATAGAAGTGGAAAAGGTTG+AGG - chr5_1:16445584-16445603 Msa0720440:intron 35.0%
AAAGACACCTGTGAAATAGT+TGG - chr5_1:16445619-16445638 Msa0720440:intron 35.0%
GGTGCATTTAGCAAAAAGAA+TGG - chr5_1:16445643-16445662 Msa0720440:intron 35.0%
CAACATCAACCACAAAACTT+AGG + chr5_1:16445744-16445763 None:intergenic 35.0%
!! AATATTGGGTTAGTAAGTGG+GGG - chr5_1:16445766-16445785 Msa0720440:exon 35.0%
GGAAATGAAAATGTACTCCT+TGG - chr5_1:16445795-16445814 Msa0720440:five_prime_UTR 35.0%
! AGATATAGCACCTTTTTCCA+AGG + chr5_1:16445815-16445834 None:intergenic 35.0%
TGAGAAGTAAAGAAGAGTGA+GGG + chr5_1:16443688-16443707 None:intergenic 35.0%
TTGAGAAGTAAAGAAGAGTG+AGG + chr5_1:16443689-16443708 None:intergenic 35.0%
GTGAAAAAGTGAACGATGTT+TGG + chr5_1:16443778-16443797 None:intergenic 35.0%
GAGAAATCAAACCAAAGAAC+AGG - chr5_1:16443860-16443879 Msa0720440:three_prime_UTR 35.0%
CATCTGTTATCATCATCATC+AGG + chr5_1:16444033-16444052 None:intergenic 35.0%
! CTGATGATGATGATAACAGA+TGG - chr5_1:16444031-16444050 Msa0720440:three_prime_UTR 35.0%
TTCAACAATGGTTTCAACCA+TGG + chr5_1:16444060-16444079 None:intergenic 35.0%
GAAGACAAACCTGAATGTAA+CGG + chr5_1:16444206-16444225 None:intergenic 35.0%
!!! TCTGACACATTTTTGGTTCA+TGG - chr5_1:16444278-16444297 Msa0720440:CDS 35.0%
!!! CTGACACATTTTTGGTTCAT+GGG - chr5_1:16444279-16444298 Msa0720440:CDS 35.0%
TATGGTTTGAACAGATTAGG+AGG - chr5_1:16444510-16444529 Msa0720440:intron 35.0%
CTTCATACCATGATGTGATA+AGG - chr5_1:16444534-16444553 Msa0720440:intron 35.0%
GAATGAGATTCAGAAACACT+TGG - chr5_1:16444559-16444578 Msa0720440:intron 35.0%
CTACATTATCAACAGTGCAA+GGG - chr5_1:16444601-16444620 Msa0720440:intron 35.0%
CTGAACAAATCGCTATTGTT+CGG - chr5_1:16444804-16444823 Msa0720440:intron 35.0%
TGGGTTAAAATGAGTTGTTG+AGG - chr5_1:16444996-16445015 Msa0720440:CDS 35.0%
TGAATGTGAATTGCAGATTG+TGG - chr5_1:16445200-16445219 Msa0720440:intron 35.0%
GAATGTGAATTGCAGATTGT+GGG - chr5_1:16445201-16445220 Msa0720440:intron 35.0%
AATGTGAATTGCAGATTGTG+GGG - chr5_1:16445202-16445221 Msa0720440:intron 35.0%
CTAAGAACTTCCAGAAGAAA+AGG - chr5_1:16445229-16445248 Msa0720440:intron 35.0%
AAGGAGACAATTAACAGCAA+TGG - chr5_1:16445248-16445267 Msa0720440:intron 35.0%
CTGTAATTAACTGAAGTTGG+GGG + chr5_1:16445363-16445382 None:intergenic 35.0%
! CAACCTTTTCCACTTCTATT+TGG + chr5_1:16445584-16445603 None:intergenic 35.0%
AATAGAAGTGGAAAAGGTTG+AGG - chr5_1:16445584-16445603 Msa0720440:intron 35.0%
AAAGACACCTGTGAAATAGT+TGG - chr5_1:16445619-16445638 Msa0720440:intron 35.0%
GGTGCATTTAGCAAAAAGAA+TGG - chr5_1:16445643-16445662 Msa0720440:intron 35.0%
CAACATCAACCACAAAACTT+AGG + chr5_1:16445744-16445763 None:intergenic 35.0%
!! AATATTGGGTTAGTAAGTGG+GGG - chr5_1:16445766-16445785 Msa0720440:exon 35.0%
GGAAATGAAAATGTACTCCT+TGG - chr5_1:16445795-16445814 Msa0720440:five_prime_UTR 35.0%
! AGATATAGCACCTTTTTCCA+AGG + chr5_1:16445815-16445834 None:intergenic 35.0%
AAGTAAAGAAGAGTGAGGGA+GGG + chr5_1:16443684-16443703 None:intergenic 40.0%
GAGAGAGAAGCAGAGAAATA+GGG + chr5_1:16443727-16443746 None:intergenic 40.0%
AGAGAGAGAAGCAGAGAAAT+AGG + chr5_1:16443728-16443747 None:intergenic 40.0%
TCAAACCAAACACACACCAA+TGG - chr5_1:16443807-16443826 Msa0720440:three_prime_UTR 40.0%
AATTGCCATTGGTGTGTGTT+TGG + chr5_1:16443815-16443834 None:intergenic 40.0%
! TGGTTTGATTTCTCTGACAC+TGG + chr5_1:16443854-16443873 None:intergenic 40.0%
ACCAAAGAACAGGAGAATCA+TGG - chr5_1:16443870-16443889 Msa0720440:three_prime_UTR 40.0%
ACCATGATTCTCCTGTTCTT+TGG + chr5_1:16443874-16443893 None:intergenic 40.0%
!!! ATTTTTGAATAGGGTGCTGG+AGG - chr5_1:16444006-16444025 Msa0720440:three_prime_UTR 40.0%
AACAATGGTTTCAACCATGG+TGG + chr5_1:16444057-16444076 None:intergenic 40.0%
CTCAGCACAGAAAACAAAAG+TGG + chr5_1:16444352-16444371 None:intergenic 40.0%
CATTCACCCTTATCACATCA+TGG + chr5_1:16444544-16444563 None:intergenic 40.0%
!! CCTTGCACTGTTGATAATGT+AGG + chr5_1:16444603-16444622 None:intergenic 40.0%
CCTACATTATCAACAGTGCA+AGG - chr5_1:16444600-16444619 Msa0720440:intron 40.0%
GGGTTGTGTTCTTGAATGAA+AGG - chr5_1:16444621-16444640 Msa0720440:intron 40.0%
GCTATAACAATGTTGTGTGG+CGG + chr5_1:16444910-16444929 None:intergenic 40.0%
TGCGCTATAACAATGTTGTG+TGG + chr5_1:16444913-16444932 None:intergenic 40.0%
CAAGAGTCTCGTGAATCAAA+TGG + chr5_1:16445043-16445062 None:intergenic 40.0%
TAATTAACTGAAGTTGGGGG+TGG + chr5_1:16445360-16445379 None:intergenic 40.0%
AGAACAGCCAAGAGAAGAAA+GGG - chr5_1:16445381-16445400 Msa0720440:intron 40.0%
TGGTATTCCCTTTCTTCTCT+TGG + chr5_1:16445391-16445410 None:intergenic 40.0%
!!! TACTTGTTTTGCTACACGCA+CGG + chr5_1:16445680-16445699 None:intergenic 40.0%
TTCAAATGCGGTCGAACAAT+GGG + chr5_1:16445899-16445918 None:intergenic 40.0%
TTTCAAATGCGGTCGAACAA+TGG + chr5_1:16445900-16445919 None:intergenic 40.0%
AAGTAAAGAAGAGTGAGGGA+GGG + chr5_1:16443684-16443703 None:intergenic 40.0%
GAGAGAGAAGCAGAGAAATA+GGG + chr5_1:16443727-16443746 None:intergenic 40.0%
AGAGAGAGAAGCAGAGAAAT+AGG + chr5_1:16443728-16443747 None:intergenic 40.0%
TCAAACCAAACACACACCAA+TGG - chr5_1:16443807-16443826 Msa0720440:three_prime_UTR 40.0%
AATTGCCATTGGTGTGTGTT+TGG + chr5_1:16443815-16443834 None:intergenic 40.0%
! TGGTTTGATTTCTCTGACAC+TGG + chr5_1:16443854-16443873 None:intergenic 40.0%
ACCAAAGAACAGGAGAATCA+TGG - chr5_1:16443870-16443889 Msa0720440:three_prime_UTR 40.0%
ACCATGATTCTCCTGTTCTT+TGG + chr5_1:16443874-16443893 None:intergenic 40.0%
!!! ATTTTTGAATAGGGTGCTGG+AGG - chr5_1:16444006-16444025 Msa0720440:three_prime_UTR 40.0%
AACAATGGTTTCAACCATGG+TGG + chr5_1:16444057-16444076 None:intergenic 40.0%
CTCAGCACAGAAAACAAAAG+TGG + chr5_1:16444352-16444371 None:intergenic 40.0%
CATTCACCCTTATCACATCA+TGG + chr5_1:16444544-16444563 None:intergenic 40.0%
!! CCTTGCACTGTTGATAATGT+AGG + chr5_1:16444603-16444622 None:intergenic 40.0%
CCTACATTATCAACAGTGCA+AGG - chr5_1:16444600-16444619 Msa0720440:intron 40.0%
GGGTTGTGTTCTTGAATGAA+AGG - chr5_1:16444621-16444640 Msa0720440:intron 40.0%
GCTATAACAATGTTGTGTGG+CGG + chr5_1:16444910-16444929 None:intergenic 40.0%
TGCGCTATAACAATGTTGTG+TGG + chr5_1:16444913-16444932 None:intergenic 40.0%
CAAGAGTCTCGTGAATCAAA+TGG + chr5_1:16445043-16445062 None:intergenic 40.0%
TAATTAACTGAAGTTGGGGG+TGG + chr5_1:16445360-16445379 None:intergenic 40.0%
AGAACAGCCAAGAGAAGAAA+GGG - chr5_1:16445381-16445400 Msa0720440:intron 40.0%
TGGTATTCCCTTTCTTCTCT+TGG + chr5_1:16445391-16445410 None:intergenic 40.0%
!!! TACTTGTTTTGCTACACGCA+CGG + chr5_1:16445680-16445699 None:intergenic 40.0%
TTCAAATGCGGTCGAACAAT+GGG + chr5_1:16445899-16445918 None:intergenic 40.0%
TTTCAAATGCGGTCGAACAA+TGG + chr5_1:16445900-16445919 None:intergenic 40.0%
GTTCTTGTAGGTCTTGGAAG+CGG + chr5_1:16443656-16443675 None:intergenic 45.0%
! GAATGGGTTCTTGTAGGTCT+TGG + chr5_1:16443662-16443681 None:intergenic 45.0%
GAAGTAAAGAAGAGTGAGGG+AGG + chr5_1:16443685-16443704 None:intergenic 45.0%
! GGGATTTTTGAATAGGGTGC+TGG - chr5_1:16444003-16444022 Msa0720440:three_prime_UTR 45.0%
ATGATAACAGATGGCCACCA+TGG - chr5_1:16444040-16444059 Msa0720440:three_prime_UTR 45.0%
GAATGTAACGGTGGTCTTTG+TGG + chr5_1:16444194-16444213 None:intergenic 45.0%
CAAAGACCACCGTTACATTC+AGG - chr5_1:16444194-16444213 Msa0720440:CDS 45.0%
GACAAACCTGAATGTAACGG+TGG + chr5_1:16444203-16444222 None:intergenic 45.0%
CAGAAACACTTGGACATTGC+TGG - chr5_1:16444569-16444588 Msa0720440:intron 45.0%
TGAATGAAAGGCCTCAACCA+AGG - chr5_1:16444633-16444652 Msa0720440:intron 45.0%
! GTGTTTGTGACACCTTTTCC+TGG + chr5_1:16444659-16444678 None:intergenic 45.0%
GTAGCCTTCTTGATTCCTTC+CGG - chr5_1:16444696-16444715 Msa0720440:intron 45.0%
AGAACCGGAAGGAATCAAGA+AGG + chr5_1:16444703-16444722 None:intergenic 45.0%
TGCAACCAAGAGAACAGAAC+CGG + chr5_1:16444718-16444737 None:intergenic 45.0%
GTTCTGTTCTCTTGGTTGCA+AGG - chr5_1:16444718-16444737 Msa0720440:intron 45.0%
CGCAGCTATAGTGAGAACAT+TGG - chr5_1:16444929-16444948 Msa0720440:CDS 45.0%
AGCAATGGCATCAGATTCTG+AGG - chr5_1:16445263-16445282 Msa0720440:intron 45.0%
CAGAACAGCCAAGAGAAGAA+AGG - chr5_1:16445380-16445399 Msa0720440:intron 45.0%
AATACCACATAGAGCCCCAT+TGG - chr5_1:16445404-16445423 Msa0720440:CDS 45.0%
ATACCACATAGAGCCCCATT+GGG - chr5_1:16445405-16445424 Msa0720440:CDS 45.0%
GACACCTGTGAAATAGTTGG+TGG - chr5_1:16445622-16445641 Msa0720440:intron 45.0%
TGCACCACCAACTATTTCAC+AGG + chr5_1:16445629-16445648 None:intergenic 45.0%
!!! ACTTGTTTTGCTACACGCAC+GGG + chr5_1:16445679-16445698 None:intergenic 45.0%
GTTAGTAAGTGGGGGAAGAA+AGG - chr5_1:16445774-16445793 Msa0720440:exon 45.0%
GTTCTTGTAGGTCTTGGAAG+CGG + chr5_1:16443656-16443675 None:intergenic 45.0%
! GAATGGGTTCTTGTAGGTCT+TGG + chr5_1:16443662-16443681 None:intergenic 45.0%
GAAGTAAAGAAGAGTGAGGG+AGG + chr5_1:16443685-16443704 None:intergenic 45.0%
! GGGATTTTTGAATAGGGTGC+TGG - chr5_1:16444003-16444022 Msa0720440:three_prime_UTR 45.0%
ATGATAACAGATGGCCACCA+TGG - chr5_1:16444040-16444059 Msa0720440:three_prime_UTR 45.0%
GAATGTAACGGTGGTCTTTG+TGG + chr5_1:16444194-16444213 None:intergenic 45.0%
CAAAGACCACCGTTACATTC+AGG - chr5_1:16444194-16444213 Msa0720440:CDS 45.0%
GACAAACCTGAATGTAACGG+TGG + chr5_1:16444203-16444222 None:intergenic 45.0%
CAGAAACACTTGGACATTGC+TGG - chr5_1:16444569-16444588 Msa0720440:intron 45.0%
TGAATGAAAGGCCTCAACCA+AGG - chr5_1:16444633-16444652 Msa0720440:intron 45.0%
! GTGTTTGTGACACCTTTTCC+TGG + chr5_1:16444659-16444678 None:intergenic 45.0%
GTAGCCTTCTTGATTCCTTC+CGG - chr5_1:16444696-16444715 Msa0720440:intron 45.0%
AGAACCGGAAGGAATCAAGA+AGG + chr5_1:16444703-16444722 None:intergenic 45.0%
TGCAACCAAGAGAACAGAAC+CGG + chr5_1:16444718-16444737 None:intergenic 45.0%
GTTCTGTTCTCTTGGTTGCA+AGG - chr5_1:16444718-16444737 Msa0720440:intron 45.0%
CGCAGCTATAGTGAGAACAT+TGG - chr5_1:16444929-16444948 Msa0720440:CDS 45.0%
AGCAATGGCATCAGATTCTG+AGG - chr5_1:16445263-16445282 Msa0720440:intron 45.0%
CAGAACAGCCAAGAGAAGAA+AGG - chr5_1:16445380-16445399 Msa0720440:intron 45.0%
AATACCACATAGAGCCCCAT+TGG - chr5_1:16445404-16445423 Msa0720440:CDS 45.0%
ATACCACATAGAGCCCCATT+GGG - chr5_1:16445405-16445424 Msa0720440:CDS 45.0%
GACACCTGTGAAATAGTTGG+TGG - chr5_1:16445622-16445641 Msa0720440:intron 45.0%
TGCACCACCAACTATTTCAC+AGG + chr5_1:16445629-16445648 None:intergenic 45.0%
!!! ACTTGTTTTGCTACACGCAC+GGG + chr5_1:16445679-16445698 None:intergenic 45.0%
GTTAGTAAGTGGGGGAAGAA+AGG - chr5_1:16445774-16445793 Msa0720440:exon 45.0%
AGAAGAGTGAGGGAGGGAAT+GGG + chr5_1:16443678-16443697 None:intergenic 50.0%
AAGAAGAGTGAGGGAGGGAA+TGG + chr5_1:16443679-16443698 None:intergenic 50.0%
GCAAGACAGAGAGAACAGAG+AGG + chr5_1:16444168-16444187 None:intergenic 50.0%
TCCTTCCGGTTCTGTTCTCT+TGG - chr5_1:16444710-16444729 Msa0720440:intron 50.0%
ACCAAGAGAACAGAACCGGA+AGG + chr5_1:16444714-16444733 None:intergenic 50.0%
TACCACATAGAGCCCCATTG+GGG - chr5_1:16445406-16445425 Msa0720440:CDS 50.0%
TAGATCAAGTCCCCCCAATG+GGG + chr5_1:16445421-16445440 None:intergenic 50.0%
CTAGATCAAGTCCCCCCAAT+GGG + chr5_1:16445422-16445441 None:intergenic 50.0%
TCTAGATCAAGTCCCCCCAA+TGG + chr5_1:16445423-16445442 None:intergenic 50.0%
AGAAGAGTGAGGGAGGGAAT+GGG + chr5_1:16443678-16443697 None:intergenic 50.0%
AAGAAGAGTGAGGGAGGGAA+TGG + chr5_1:16443679-16443698 None:intergenic 50.0%
GCAAGACAGAGAGAACAGAG+AGG + chr5_1:16444168-16444187 None:intergenic 50.0%
TCCTTCCGGTTCTGTTCTCT+TGG - chr5_1:16444710-16444729 Msa0720440:intron 50.0%
ACCAAGAGAACAGAACCGGA+AGG + chr5_1:16444714-16444733 None:intergenic 50.0%
TACCACATAGAGCCCCATTG+GGG - chr5_1:16445406-16445425 Msa0720440:CDS 50.0%
TAGATCAAGTCCCCCCAATG+GGG + chr5_1:16445421-16445440 None:intergenic 50.0%
CTAGATCAAGTCCCCCCAAT+GGG + chr5_1:16445422-16445441 None:intergenic 50.0%
TCTAGATCAAGTCCCCCCAA+TGG + chr5_1:16445423-16445442 None:intergenic 50.0%
! GGGAGGGAATGGGTTCTTGT+AGG + chr5_1:16443668-16443687 None:intergenic 55.0%
!!! CCTTTTCCTGGCCTTGGTTG+AGG + chr5_1:16444647-16444666 None:intergenic 55.0%
CCTCAACCAAGGCCAGGAAA+AGG - chr5_1:16444644-16444663 Msa0720440:intron 55.0%
! GTGACACCTTTTCCTGGCCT+TGG + chr5_1:16444653-16444672 None:intergenic 55.0%
GAAGTTGGGGGTGGTGTAGA+TGG + chr5_1:16445351-16445370 None:intergenic 55.0%
ACCACATAGAGCCCCATTGG+GGG - chr5_1:16445407-16445426 Msa0720440:CDS 55.0%
! GGGAGGGAATGGGTTCTTGT+AGG + chr5_1:16443668-16443687 None:intergenic 55.0%
!!! CCTTTTCCTGGCCTTGGTTG+AGG + chr5_1:16444647-16444666 None:intergenic 55.0%
CCTCAACCAAGGCCAGGAAA+AGG - chr5_1:16444644-16444663 Msa0720440:intron 55.0%
! GTGACACCTTTTCCTGGCCT+TGG + chr5_1:16444653-16444672 None:intergenic 55.0%
GAAGTTGGGGGTGGTGTAGA+TGG + chr5_1:16445351-16445370 None:intergenic 55.0%
ACCACATAGAGCCCCATTGG+GGG - chr5_1:16445407-16445426 Msa0720440:CDS 55.0%
GAAAGGCCTCAACCAAGGCC+AGG - chr5_1:16444638-16444657 Msa0720440:intron 60.0%
CCACATAGAGCCCCATTGGG+GGG - chr5_1:16445408-16445427 Msa0720440:CDS 60.0%
GAAAGGCCTCAACCAAGGCC+AGG - chr5_1:16444638-16444657 Msa0720440:intron 60.0%
CCACATAGAGCCCCATTGGG+GGG - chr5_1:16445408-16445427 Msa0720440:CDS 60.0%
CCCCCCAATGGGGCTCTATG+TGG + chr5_1:16445411-16445430 None:intergenic 65.0%
CCCCCCAATGGGGCTCTATG+TGG + chr5_1:16445411-16445430 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16443635 16445967 16443635 ID=Msa0720440;Name=Msa0720440
chr5_1 mRNA 16443635 16445967 16443635 ID=Msa0720440-mRNA-1;Parent=Msa0720440;Name=Msa0720440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=191|1|1|1|1|1|4|518|237
chr5_1 exon 16443635 16444386 16443635 ID=Msa0720440-mRNA-1:exon:6265;Parent=Msa0720440-mRNA-1
chr5_1 exon 16444863 16445078 16444863 ID=Msa0720440-mRNA-1:exon:6264;Parent=Msa0720440-mRNA-1
chr5_1 exon 16445387 16445584 16445387 ID=Msa0720440-mRNA-1:exon:6263;Parent=Msa0720440-mRNA-1
chr5_1 exon 16445711 16445967 16445711 ID=Msa0720440-mRNA-1:exon:6262;Parent=Msa0720440-mRNA-1
chr5_1 five_prime_UTR 16445777 16445967 16445777 ID=Msa0720440-mRNA-1:five_prime_utr;Parent=Msa0720440-mRNA-1
chr5_1 CDS 16445711 16445776 16445711 ID=Msa0720440-mRNA-1:cds;Parent=Msa0720440-mRNA-1
chr5_1 CDS 16445387 16445584 16445387 ID=Msa0720440-mRNA-1:cds;Parent=Msa0720440-mRNA-1
chr5_1 CDS 16444863 16445078 16444863 ID=Msa0720440-mRNA-1:cds;Parent=Msa0720440-mRNA-1
chr5_1 CDS 16444153 16444386 16444153 ID=Msa0720440-mRNA-1:cds;Parent=Msa0720440-mRNA-1
chr5_1 three_prime_UTR 16443635 16444152 16443635 ID=Msa0720440-mRNA-1:three_prime_utr;Parent=Msa0720440-mRNA-1
Gene Sequence

>Msa0720440

ATGGCAATTGAAAATCAAGAAAACACCAGTGTCAGAGAAATCAAACCAAAGAACAGGAGAATCATGGGTGCTGGAGGACCTGATGATGATGATAACAGATGGCCACCATGGTTGAAACCATTGTTGAAAGAAGCTTTCTTTGTTCAATGCAAGATACATGCTGATTCTCACAAGAGTGAATGTAATATGTATTGTTTGGATTGTATGAATGGTCCTCTCTGTTCTCTCTGTCTTGCTTACCACAAAGACCACCGTTACATTCAGATTAGGAGGTCTTCATACCATGATGTGATAAGGGTGAATGAGATTCAGAAACACTTGGACATTGCTGGTGTTCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAAAGGCCTCAACCAAGGCCAGGAAAAGGTGTCACAAACACTTGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCCTTCCGGTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACATCTAAGAACTTCCAGAAGAAAAGGAGACAATTAACAGCAATGGCATCAGATTCTGAGGAGTCATACAGTAGCAACAACATTCATAGCCGTCAGAAGAAAATCAAAGTTCAAAGCTTTACACCATCTACACCACCCCCAACTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAGCCCCATTGGGGGGACTTGATCTAGATTATTAG
Protein sequence

>Msa0720440

MAIENQENTSVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKRRQLTAMASDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDLDY*