AlfalfaGEDB | Msa0841610

M. sativa cultivar zhongmu-4 / Msa0841610

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841610	XP_003612885.1	98.734	237	3	0	1	237	1	237	1.68e-176	494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841610	sp\|Q1G3Q4\|RITF1_ARATH	46.667	135	71	1	35	169	6	139	1.77e-35	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841610	G7KDS6	98.734	237	3	0	1	237	1	237	8.03e-177	494

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TFs/TRs:

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Gene ID	Type	Classification
Msa0841610	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0720440	Msa0841610	0.861530	9.615132e-64	-8.615850e-47
Msa0760980	Msa0841610	0.862809	3.896565e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841610	MtrunA17_Chr5g0411151	98.734	237	3	0	1	237	1	237	1.55e-180	494
Msa0841610	MtrunA17_Chr8g0366581	85.294	238	31	3	1	237	1	235	5.84e-142	396
Msa0841610	MtrunA17_Chr4g0040071	73.500	200	51	1	33	232	13	210	7.61e-110	315
Msa0841610	MtrunA17_Chr5g0395181	70.283	212	54	3	21	232	7	209	1.17e-107	309
Msa0841610	MtrunA17_Chr1g0179781	54.680	203	79	4	35	231	7	202	6.08e-72	218
Msa0841610	MtrunA17_Chr7g0265291	58.000	200	78	3	35	231	7	203	1.99e-70	214
Msa0841610	MtrunA17_Chr4g0020811	48.227	141	63	3	31	161	2	142	5.61e-42	140
Msa0841610	MtrunA17_Chr2g0308401	50.735	136	57	4	36	161	5	140	5.64e-42	140
Msa0841610	MtrunA17_Chr2g0320521	36.000	225	114	5	36	230	7	231	9.93e-41	139
Msa0841610	MtrunA17_Chr7g0230511	34.979	243	112	5	32	230	6	246	1.94e-38	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841610	AT4G17900.1	74.249	233	52	4	1	231	1	227	4.12e-126	357
Msa0841610	AT4G17900.2	73.762	202	46	3	32	231	17	213	9.18e-107	307
Msa0841610	AT1G32700.1	72.093	215	55	2	25	237	2	213	4.28e-105	303
Msa0841610	AT1G32700.2	73.446	177	42	2	63	237	1	174	1.60e-82	244
Msa0841610	AT5G46710.1	53.191	235	95	6	1	230	1	225	1.48e-80	241
Msa0841610	AT1G21000.2	48.750	240	84	4	28	230	6	243	3.96e-76	230
Msa0841610	AT1G21000.1	48.750	240	84	4	28	230	9	246	4.51e-76	230
Msa0841610	AT5G46710.3	52.404	208	91	4	28	230	5	209	7.20e-73	221
Msa0841610	AT1G76590.1	49.130	230	81	2	35	230	18	245	5.97e-72	220
Msa0841610	AT5G46710.2	60.494	162	56	3	1	161	1	155	4.37e-68	207

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Find 85 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACTCCTTGGAAAA+AGG	0.303792	5_4:-18066456	Msa0841610:three_prime_UTR
AAACTTAGGTATAATTACTT+TGG	0.428168	5_4:+18066530	None:intergenic
AAAGACACCTGTGAAATAGT+TGG	0.556251	5_4:-18066638	Msa0841610:three_prime_UTR
AAAGGTGCTATATCTAAATA+TGG	0.332200	5_4:-18066438	Msa0841610:three_prime_UTR
AAATATTGGTTTAGTAAGTG+GGG	0.593666	5_4:-18066492	Msa0841610:three_prime_UTR
AACAATGGTTTCAACCATGG+TGG	0.622605	5_4:+18068262	None:intergenic
AAGAAAGCTTCTTTCAACAA+TGG	0.545716	5_4:+18068247	None:intergenic
AAGAAGAGTGAGGGAGGGAA+TGG	0.371714	5_4:+18068660	None:intergenic
AAGGAGACAATTAACAGCAA+TGG	0.585369	5_4:-18067009	Msa0841610:CDS
AAGTAAAGAAGAGTGAGGGA+GGG	0.545559	5_4:+18068655	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAAGTGAAAGATGTT+TGG	+	chr5_4:18066461-18066480	None:intergenic	30.0%
ATCTAGCATTAGATTCTTGA+TGG	-	chr5_4:18066582-18066601	Msa0841610:three_prime_UTR	30.0%
TCTAGCATTAGATTCTTGAT+GGG	-	chr5_4:18066583-18066602	Msa0841610:three_prime_UTR	30.0%
AAGAAAGCTTCTTTCAACAA+TGG	+	chr5_4:18066762-18066781	None:intergenic	30.0%
TTGTATGGTTTGAACAGATT+AGG	-	chr5_4:18067256-18067275	Msa0841610:intron	30.0%
TTCATACCATGATGTGATAA+GGG	-	chr5_4:18067284-18067303	Msa0841610:intron	30.0%
AATTGATGAGAATACATTGG+TGG	+	chr5_4:18067518-18067537	None:intergenic	30.0%
ACTATAACAATGTTGTGTAG+CGG	-	chr5_4:18067619-18067638	Msa0841610:CDS	30.0%
TATTCAAATCCCAACATTCA+TGG	+	chr5_4:18067857-18067876	None:intergenic	30.0%
TCTGTAATTAACTGAAGTTG+GGG	+	chr5_4:18068113-18068132	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	18066305	18068723	18066305	ID=Msa0841610;Name=Msa0841610
chr5_4	mRNA	18066305	18068723	18066305	ID=Msa0841610-mRNA-1;Parent=Msa0841610;Name=Msa0841610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=202\|1\|1\|1\|1\|1\|4\|525\|237
chr5_4	exon	18066305	18067063	18066305	ID=Msa0841610-mRNA-1:exon:7606;Parent=Msa0841610-mRNA-1
chr5_4	exon	18067540	18067755	18067540	ID=Msa0841610-mRNA-1:exon:7605;Parent=Msa0841610-mRNA-1
chr5_4	exon	18068123	18068320	18068123	ID=Msa0841610-mRNA-1:exon:7604;Parent=Msa0841610-mRNA-1
chr5_4	exon	18068456	18068723	18068456	ID=Msa0841610-mRNA-1:exon:7603;Parent=Msa0841610-mRNA-1
chr5_4	five_prime_UTR	18068522	18068723	18068522	ID=Msa0841610-mRNA-1:five_prime_utr;Parent=Msa0841610-mRNA-1
chr5_4	CDS	18068456	18068521	18068456	ID=Msa0841610-mRNA-1:cds;Parent=Msa0841610-mRNA-1
chr5_4	CDS	18068123	18068320	18068123	ID=Msa0841610-mRNA-1:cds;Parent=Msa0841610-mRNA-1
chr5_4	CDS	18067540	18067755	18067540	ID=Msa0841610-mRNA-1:cds;Parent=Msa0841610-mRNA-1
chr5_4	CDS	18066830	18067063	18066830	ID=Msa0841610-mRNA-1:cds;Parent=Msa0841610-mRNA-1
chr5_4	three_prime_UTR	18066305	18066829	18066305	ID=Msa0841610-mRNA-1:three_prime_utr;Parent=Msa0841610-mRNA-1

Gene Sequence

>Msa0841610

ATGGCAATTGAAAATCAAGAAAACACCAGTGTCAGAGAAATCAAACCAAAGAACAGGAGAATCATGGGTGCTGGAGGACCTGATGATGATGATAACAGATGGCCACCATGGTTGAAACCATTGTTGAAAGAAGCTTTCTTTGTTCAATGCAAGATACATGCTGATTCTCACAAGAGTGAATGTAATATGTATTGTTTGGATTGTATGAATGGTCCTCTCTGTTCTCTCTGTCTTGCTTACCACAAAGACCACCGTTACATTCAGATTAGGAGGTCTTCATACCATGATGTGATAAGGGTGAATGAGATTCAGAAACACTTGGACATTGCTGGTGTTCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTTTTGAATGAAAGGCCTCAACCAAGGCCAGGAAAAGGTGTCACAAACACTTGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCCTTCCGGTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACATCTAAGAACTTCCAGAAGAAAAGGAGACAATTAACAGCAATGGCATCAGATTCTGAGGAGTCATACAGTAGCAACAACATTCATAGCCGTCAGAAGAAAATCAAAGTTCAAAGCTTTACACCATCTACACCACCCCCAACTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAGCCCCATTGGGGGGACTTGATCTAGATTATTAG

Protein sequence

>Msa0841610

MAIENQENTSVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKRRQLTAMASDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDLDY*