AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720560 MtrunA17_Chr8g0359381 49.600 125 52 5 1 119 602 721 3.12e-28 115
Msa0720560 MtrunA17_Chr8g0359381 33.019 106 71 0 97 202 866 971 6.58e-11 63.5
Msa0720560 MtrunA17_Chr5g0431011 54.717 106 41 4 1 100 254 358 9.16e-28 113
Msa0720560 MtrunA17_Chr4g0002791 48.000 125 54 6 1 119 192 311 8.02e-26 107
Msa0720560 MtrunA17_Chr3g0131371 47.115 104 51 2 2 102 138 240 1.01e-24 103
Msa0720560 MtrunA17_Chr2g0296731 55.172 87 39 0 1 87 165 251 1.24e-24 103
Msa0720560 MtrunA17_Chr2g0296731 46.269 67 36 0 128 194 429 495 3.66e-12 67.0
Msa0720560 MtrunA17_Chr8g0363541 51.163 86 39 1 13 95 156 241 3.51e-24 100
Msa0720560 MtrunA17_Chr2g0314641 53.333 75 32 1 13 87 1 72 1.23e-21 89.7
Msa0720560 MtrunA17_Chr4g0020731 45.714 105 39 3 2 106 449 535 3.94e-20 91.3
Msa0720560 MtrunA17_Chr6g0488181 45.882 85 40 2 1 85 91 169 2.75e-17 79.0
Msa0720560 MtrunA17_Chr4g0023831 41.905 105 49 1 1 105 1371 1463 7.12e-17 81.6
Msa0720560 MtrunA17_Chr5g0418601 40.000 105 53 1 99 193 13 117 4.97e-16 73.6
Msa0720560 MtrunA17_Chr7g0255341 46.667 75 40 0 128 202 90 164 8.66e-16 73.9
Msa0720560 MtrunA17_Chr4g0019431 33.562 146 70 4 22 147 48 186 4.77e-15 75.1
Msa0720560 MtrunA17_Chr4g0019431 39.286 84 47 1 108 191 299 378 3.16e-11 63.9
Msa0720560 MtrunA17_Chr1g0163851 40.566 106 52 2 99 193 57 162 5.81e-15 72.0
Msa0720560 MtrunA17_Chr2g0295751 40.206 97 54 1 108 204 380 472 4.27e-14 72.8
Msa0720560 MtrunA17_Chr4g0058441 35.556 135 66 4 3 119 146 277 5.25e-14 72.4
Msa0720560 MtrunA17_Chr5g0430691 44.595 74 41 0 114 187 269 342 4.98e-13 68.9
Msa0720560 MtrunA17_Chr4g0031641 45.455 66 36 0 128 193 217 282 2.25e-12 66.6
Msa0720560 MtrunA17_Chr2g0333651 42.466 73 41 1 131 202 52 124 5.48e-12 62.4
Msa0720560 MtrunA17_Chr4g0030201 30.189 106 74 0 97 202 21 126 5.32e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGTATATTTCTATATTT+TGG 0.091105 5_1:-16584375 Msa0720560:three_prime_UTR
TCTCTAAATTGACAAGTTTA+AGG 0.096790 5_1:-16585062 Msa0720560:CDS
TAGGGAGGGGTTGTGGTTTA+AGG 0.156085 5_1:-16588864 Msa0720560:CDS
TTTAAGGTATAACATCTTAA+TGG 0.275521 5_1:-16585046 Msa0720560:CDS
CATAAGTGATTTAGTCTTGT+TGG 0.295211 5_1:+16587965 None:intergenic
ACTTAGTTCGCTTACTCTTC+AGG 0.297019 5_1:-16588077 Msa0720560:intron
AGGATATTGAGACAGATATT+TGG 0.316733 5_1:-16588457 Msa0720560:CDS
TTTGCACCGTTTGGGTGTTA+TGG 0.332803 5_1:-16588013 Msa0720560:CDS
TTGTATCGCTTTGCACCGTT+TGG 0.333054 5_1:-16588022 Msa0720560:CDS
TGTCCTTTGCTTTGATAGTA+AGG 0.344556 5_1:+16585090 None:intergenic
AAAGTTAAAATTTCTACCTT+AGG 0.356755 5_1:-16587930 Msa0720560:CDS
TAGTGGATAGGGAGGGGTTG+TGG 0.367141 5_1:-16588871 Msa0720560:CDS
CCACAATGTCTCAAAGTGTT+TGG 0.385660 5_1:-16584500 Msa0720560:CDS
GTTGGAGGTGTCTAGTGGAT+AGG 0.406122 5_1:-16588883 Msa0720560:CDS
TTGGAGGTGTCTAGTGGATA+GGG 0.410076 5_1:-16588882 Msa0720560:CDS
CGAGGGATGGTTCTGCCTGG+TGG 0.410077 5_1:-16588793 Msa0720560:CDS
ATTTGTATGAGCAAGGAGTT+AGG 0.411020 5_1:-16588962 None:intergenic
CTCTCGTTACGGTGAGGAGA+GGG 0.412965 5_1:-16588834 Msa0720560:CDS
TTTGAGGGTGCGACGGTTGA+AGG 0.414467 5_1:-16588936 Msa0720560:CDS
GCAAGGAGTTAGGTGGTTTG+AGG 0.422271 5_1:-16588952 Msa0720560:CDS
CATAGCTACAATGAGGCGTT+GGG 0.424325 5_1:-16588362 Msa0720560:CDS
GGGATGGTTCTGCCTGGTGG+AGG 0.435406 5_1:-16588790 Msa0720560:CDS
CCTCACCACTAATTCCTTCA+CGG 0.442688 5_1:+16588753 None:intergenic
TGTATCGCTTTGCACCGTTT+GGG 0.442844 5_1:-16588021 Msa0720560:CDS
GAATTAGTGGTGAGGGAGGG+AGG 0.457328 5_1:-16588745 Msa0720560:CDS
TGAGGGAGGGAGGTGGTTTG+AGG 0.460634 5_1:-16588735 Msa0720560:CDS
GTCCTTTGCTTTGATAGTAA+GGG 0.463463 5_1:+16585091 None:intergenic
TAGGTATGTTTCAAGTATGA+TGG 0.467184 5_1:+16584318 None:intergenic
TTTGAGACATTGTGGGATGA+AGG 0.477236 5_1:+16584508 None:intergenic
GCACCTTCTGAAAACGCAGC+TGG 0.478921 5_1:+16586027 None:intergenic
AGCTGGCCTGAAAACGCAGC+TGG 0.481170 5_1:+16586001 None:intergenic
TTAAAATTTCTACCTTAGGA+TGG 0.484481 5_1:-16587926 Msa0720560:CDS
CAAGGAGTTAGGTGGTTTGA+GGG 0.487125 5_1:-16588951 Msa0720560:CDS
TTACAGTGATAATGTGTACT+TGG 0.487909 5_1:-16584582 Msa0720560:intron
GGCACATTAAAGAAGGGGCG+AGG 0.489340 5_1:-16588811 Msa0720560:CDS
GGGCGAGGGATGGTTCTGCC+TGG 0.489526 5_1:-16588796 Msa0720560:CDS
GCATAGCTACAATGAGGCGT+TGG 0.490700 5_1:-16588363 Msa0720560:CDS
GGATGGTTCTGCCTGGTGGA+GGG 0.498174 5_1:-16588789 Msa0720560:CDS
GGTGTCTAGTGGATAGGGAG+GGG 0.498223 5_1:-16588877 Msa0720560:CDS
TGAGGAAAGTATTCAAAGGA+AGG 0.503640 5_1:-16588717 Msa0720560:intron
AAAATCCGTGAAGGAATTAG+TGG 0.513457 5_1:-16588758 Msa0720560:CDS
GAGGTGTCTAGTGGATAGGG+AGG 0.517016 5_1:-16588879 Msa0720560:CDS
CTTAATCTACACAAATCTGC+AGG 0.518893 5_1:+16584447 None:intergenic
TAGATTAAGAAAGTAACATC+AGG 0.522351 5_1:-16584433 Msa0720560:three_prime_UTR
TGGTGTCCTACTGTGGGTGA+TGG 0.530799 5_1:-16588431 Msa0720560:CDS
CTCGTTACGGTGAGGAGAGG+GGG 0.531692 5_1:-16588832 Msa0720560:CDS
GTATCAAATGCTTATGAGGC+AGG 0.534523 5_1:-16588390 Msa0720560:CDS
AGGTGTCTAGTGGATAGGGA+GGG 0.537141 5_1:-16588878 Msa0720560:CDS
GAATTCTATTTGTATGAGCA+AGG 0.537326 5_1:-16588969 None:intergenic
GGTGATGGATATACCGTTTG+TGG 0.538194 5_1:-16588416 Msa0720560:CDS
CCAAACACTTTGAGACATTG+TGG 0.538425 5_1:+16584500 None:intergenic
AAGGAATTAGTGGTGAGGGA+GGG 0.539781 5_1:-16588748 Msa0720560:CDS
AAGGTGTTGTGCTCTCGTTA+CGG 0.540065 5_1:-16588845 Msa0720560:CDS
CATTTGATACACACCACAAA+CGG 0.543316 5_1:+16588403 None:intergenic
TGAGTATACTTTGTTTCCTG+TGG 0.546609 5_1:-16587750 Msa0720560:intron
AAGGTATAACATCTTAATGG+AGG 0.553875 5_1:-16585043 Msa0720560:CDS
TTTCACTATCTCCCTCCACC+AGG 0.554163 5_1:+16588778 None:intergenic
CAAACACTTTGAGACATTGT+GGG 0.556672 5_1:+16584501 None:intergenic
TTTGGGTGTTATGGAGTGAA+AGG 0.559433 5_1:-16588004 Msa0720560:CDS
TTAGTGGTGAGGGAGGGAGG+TGG 0.566011 5_1:-16588742 Msa0720560:CDS
TTCACTCCATAACACCCAAA+CGG 0.568131 5_1:+16588007 None:intergenic
GTGTGTATCAAATGCTTATG+AGG 0.570082 5_1:-16588394 Msa0720560:CDS
CGTGAAGGAATTAGTGGTGA+GGG 0.581746 5_1:-16588752 Msa0720560:CDS
TCTCGTTACGGTGAGGAGAG+GGG 0.581958 5_1:-16588833 Msa0720560:CDS
AGGTATAACATCTTAATGGA+GGG 0.583633 5_1:-16585042 Msa0720560:intron
ATTAAAGAAGGGGCGAGGGA+TGG 0.585742 5_1:-16588806 Msa0720560:CDS
TTGGCAGTGGTGTCCTACTG+TGG 0.591793 5_1:-16588438 Msa0720560:CDS
TAGGTGGTTTGAGGGTGCGA+CGG 0.597756 5_1:-16588943 Msa0720560:CDS
GCACATTAAAGAAGGGGCGA+GGG 0.598507 5_1:-16588810 Msa0720560:CDS
ATGGTGTTGGAGGTGTCTAG+TGG 0.598733 5_1:-16588888 Msa0720560:CDS
TGGCAGTGGTGTCCTACTGT+GGG 0.603057 5_1:-16588437 Msa0720560:CDS
TTGAGACAGATATTTGGCAG+TGG 0.603979 5_1:-16588451 Msa0720560:CDS
CAGTAGCACAAGGTGTGCAA+AGG 0.604851 5_1:+16587771 None:intergenic
GCTCTCGTTACGGTGAGGAG+AGG 0.613566 5_1:-16588835 Msa0720560:CDS
AGCCCTTACTATCAAAGCAA+AGG 0.614993 5_1:-16585093 Msa0720560:CDS
ACAAATCTGCAGGTGATCTG+TGG 0.616006 5_1:+16584457 None:intergenic
GGTTTGAGGAAAGTATTCAA+AGG 0.618583 5_1:-16588721 Msa0720560:CDS
ATAGCTACAATGAGGCGTTG+GGG 0.620569 5_1:-16588361 Msa0720560:CDS
TAGTTCGCTTACTCTTCAGG+TGG 0.620819 5_1:-16588074 Msa0720560:CDS
GAAGGAATTAGTGGTGAGGG+AGG 0.634039 5_1:-16588749 Msa0720560:CDS
TGTATGAGCAAGGAGTTAGG+TGG 0.634728 5_1:-16588959 Msa0720560:CDS
TAGCTACAATGAGGCGTTGG+GGG 0.646679 5_1:-16588360 Msa0720560:CDS
CCGTGAAGGAATTAGTGGTG+AGG 0.652615 5_1:-16588753 Msa0720560:CDS
GTATATCCATCACCCACAGT+AGG 0.652965 5_1:+16588425 None:intergenic
GAGATAGTGAAAATCCGTGA+AGG 0.659425 5_1:-16588767 Msa0720560:CDS
AGTTGTCAAAGTGTCTGATG+AGG 0.661030 5_1:+16584531 None:intergenic
GGAGATGCATAGCTACAATG+AGG 0.687538 5_1:-16588369 Msa0720560:CDS
GTTGTGCTCTCGTTACGGTG+AGG 0.693338 5_1:-16588840 Msa0720560:CDS
AAAGTATACTCAGTAGCACA+AGG 0.696490 5_1:+16587761 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGATCAATAATAAATT+GGG + chr5_1:16585157-16585176 None:intergenic 10.0%
!! TAAAATGATCAATAATAAAT+TGG + chr5_1:16585158-16585177 None:intergenic 10.0%
!! AGATATTAAAATAAATAAGT+AGG - chr5_1:16586535-16586554 Msa0720560:intron 10.0%
!! AAATAAAAAAAATTGGATTT+GGG + chr5_1:16586924-16586943 None:intergenic 10.0%
!! AAAATAAAAAAAATTGGATT+TGG + chr5_1:16586925-16586944 None:intergenic 10.0%
!!! AATCATGATTATTATTTTAT+TGG - chr5_1:16588248-16588267 Msa0720560:intron 10.0%
!! AAGTATAATTATAAATGTTA+GGG + chr5_1:16588493-16588512 None:intergenic 10.0%
!! AAAGTATAATTATAAATGTT+AGG + chr5_1:16588494-16588513 None:intergenic 10.0%
!!! ATATGTATATTTCTATATTT+TGG - chr5_1:16588879-16588898 Msa0720560:CDS 10.0%
!!! GAATTTAATATTGCTATTTT+AGG - chr5_1:16584340-16584359 Msa0720560:three_prime_UTR 15.0%
!! AAATGATCAATAATAAATTG+GGG + chr5_1:16585156-16585175 None:intergenic 15.0%
!! TATATCATTAAGAGAAATTA+AGG - chr5_1:16585594-16585613 Msa0720560:intron 15.0%
!! ATATCATTAAGAGAAATTAA+GGG - chr5_1:16585595-16585614 Msa0720560:intron 15.0%
!!! AATTGATGTTTTTTAGTAAA+AGG - chr5_1:16585691-16585710 Msa0720560:intron 15.0%
!! AAGATATAAAGATTATTATG+TGG - chr5_1:16585909-16585928 Msa0720560:intron 15.0%
!! AGATATAAAGATTATTATGT+GGG - chr5_1:16585910-16585929 Msa0720560:intron 15.0%
!! TATAAAGAATTAGATAAATG+CGG - chr5_1:16586596-16586615 Msa0720560:intron 15.0%
!!! AGATAATAATAACTAGTTTA+AGG + chr5_1:16587054-16587073 None:intergenic 15.0%
!!! ATATTGCTATTTTAGGTAAA+TGG - chr5_1:16584347-16584366 Msa0720560:three_prime_UTR 20.0%
!! AAAGTTAAAATTTCTACCTT+AGG - chr5_1:16585324-16585343 Msa0720560:intron 20.0%
!!! AAAATTGTTTGTTTTCCATT+TGG - chr5_1:16585360-16585379 Msa0720560:intron 20.0%
!! AAAATGAATTATATTACCAC+AGG + chr5_1:16585523-16585542 None:intergenic 20.0%
!!! TGTGGTAATATAATTCATTT+TGG - chr5_1:16585522-16585541 Msa0720560:intron 20.0%
!! TATCATTAAGAGAAATTAAG+GGG - chr5_1:16585596-16585615 Msa0720560:intron 20.0%
!! TAAAAAAAAGAAAAGAGAAG+AGG + chr5_1:16585857-16585876 None:intergenic 20.0%
!! TCAATATTATAAACAGTTAG+CGG + chr5_1:16586445-16586464 None:intergenic 20.0%
!! AGTAGGACTTATATATTATT+TGG - chr5_1:16586552-16586571 Msa0720560:intron 20.0%
!!! TTTTTTTGTTTGGTCAAAAT+TGG - chr5_1:16586943-16586962 Msa0720560:intron 20.0%
!!! TTTTTTGTTTGGTCAAAATT+GGG - chr5_1:16586944-16586963 Msa0720560:intron 20.0%
!!! TAAGGTTTTTTAATACTCAA+TGG + chr5_1:16587036-16587055 None:intergenic 20.0%
!! TCGAATATGAAAATAAGAAA+AGG + chr5_1:16587810-16587829 None:intergenic 20.0%
!! TCTCTAAATTGAAAAGTTTA+AGG - chr5_1:16587957-16587976 Msa0720560:CDS 20.0%
!!! ATAACATCTACATCTTTTTA+TGG - chr5_1:16587981-16588000 Msa0720560:CDS 20.0%
!!! TTTAAGGTATAACATCTTAA+TGG - chr5_1:16588208-16588227 Msa0720560:intron 20.0%
!! TGAATGATGAGATTAATAAA+GGG + chr5_1:16588520-16588539 None:intergenic 20.0%
!! ATGAATGATGAGATTAATAA+AGG + chr5_1:16588521-16588540 None:intergenic 20.0%
!! TAGTACAAAATAGAGTTATA+AGG - chr5_1:16588549-16588568 Msa0720560:intron 20.0%
!!! ATGGTCTAACTACTTTTTTT+TGG - chr5_1:16584566-16584585 Msa0720560:CDS 25.0%
!!! TTTTTTTTGGACTGATTGTT+GGG - chr5_1:16584579-16584598 Msa0720560:CDS 25.0%
!! CTTTGATTTATCTGTTCATA+AGG - chr5_1:16584639-16584658 Msa0720560:intron 25.0%
! TTATTACAAATGAGTCTCAA+TGG - chr5_1:16585016-16585035 Msa0720560:intron 25.0%
! TTAAAATTTCTACCTTAGGA+TGG - chr5_1:16585328-16585347 Msa0720560:intron 25.0%
! ATCATTAAGAGAAATTAAGG+GGG - chr5_1:16585597-16585616 Msa0720560:intron 25.0%
!!! ATGCATTCATTATTTTGTGA+TGG - chr5_1:16585772-16585791 Msa0720560:intron 25.0%
! AGATACAAGAATATTGTTAG+AGG - chr5_1:16585826-16585845 Msa0720560:intron 25.0%
! AGATATTCTCATAATGTTAG+TGG - chr5_1:16586069-16586088 Msa0720560:intron 25.0%
! ATAACATGAGAAATGTCAAA+GGG - chr5_1:16586262-16586281 Msa0720560:intron 25.0%
!! TTGTTTTCGATATAAACATG+AGG - chr5_1:16586321-16586340 Msa0720560:intron 25.0%
!! TGTTTTCGATATAAACATGA+GGG - chr5_1:16586322-16586341 Msa0720560:intron 25.0%
! CTTAAACACATTGTATCTTA+CGG + chr5_1:16586663-16586682 None:intergenic 25.0%
!! GTTTTTAAATAGAACCCTTA+TGG - chr5_1:16586723-16586742 Msa0720560:intron 25.0%
!! AAAAAAATTGGATTTGGGTT+TGG + chr5_1:16586919-16586938 None:intergenic 25.0%
!! TTTTTAATACTCAATGGTAC+TGG + chr5_1:16587030-16587049 None:intergenic 25.0%
!!! TGCTATTTCCCTATTTATTT+AGG - chr5_1:16587166-16587185 Msa0720560:intron 25.0%
!! GCTATTTCCCTATTTATTTA+GGG - chr5_1:16587167-16587186 Msa0720560:intron 25.0%
! TTCTCTTCTTCTTTATGTTT+AGG - chr5_1:16587585-16587604 Msa0720560:intron 25.0%
! GTATTGAAACAACAAAAGTT+GGG + chr5_1:16587611-16587630 None:intergenic 25.0%
!! AGTATTGAAACAACAAAAGT+TGG + chr5_1:16587612-16587631 None:intergenic 25.0%
!! AAATATGTTGATTGAAGAGA+AGG - chr5_1:16587729-16587748 Msa0720560:intron 25.0%
! AAAAGGTTAAATAATGTAGC+TGG + chr5_1:16587793-16587812 None:intergenic 25.0%
! CGAATGTATACATCTATTTA+TGG - chr5_1:16587827-16587846 Msa0720560:intron 25.0%
!!! GATCTATCCTTTTTTTTTTG+TGG + chr5_1:16587936-16587955 None:intergenic 25.0%
! TCTCTAAATTGACAAGTTTA+AGG - chr5_1:16588192-16588211 Msa0720560:intron 25.0%
!!! TTTTTAGTAAAGCCTACAAA+TGG + chr5_1:16588295-16588314 None:intergenic 25.0%
! ATTTGTAGGCTTTACTAAAA+AGG - chr5_1:16588294-16588313 Msa0720560:intron 25.0%
! TAGATTAAGAAAGTAACATC+AGG - chr5_1:16588821-16588840 Msa0720560:CDS 25.0%
!!! GAAAAAGTATTAAGTGTCTT+AGG + chr5_1:16588958-16588977 None:intergenic 25.0%
!! CTATTTTAGGTAAATGGTGT+TGG - chr5_1:16584353-16584372 Msa0720560:three_prime_UTR 30.0%
!!! CTTTTTTTTGGACTGATTGT+TGG - chr5_1:16584578-16584597 Msa0720560:CDS 30.0%
! ATAGATGTTTTCCTTATGCT+GGG - chr5_1:16584675-16584694 Msa0720560:intron 30.0%
AGGATATTGAGACAGATATT+TGG - chr5_1:16584797-16584816 Msa0720560:intron 30.0%
ACATAAAATTGTTCCTCTGA+AGG - chr5_1:16584924-16584943 Msa0720560:intron 30.0%
ATTGTCTACAAAGGATAACT+TGG - chr5_1:16584981-16585000 Msa0720560:intron 30.0%
! TTCATCCATTGTCCTATTTT+CGG - chr5_1:16585081-16585100 Msa0720560:CDS 30.0%
!! CATAAGTGATTTAGTCTTGT+TGG + chr5_1:16585292-16585311 None:intergenic 30.0%
TTCCATTTGGTTATCATATG+TGG - chr5_1:16585373-16585392 Msa0720560:intron 30.0%
! TTGTCTTTTCCTTTTTCTTC+AGG - chr5_1:16585432-16585451 Msa0720560:intron 30.0%
GCTATTAAAACAAGTCACTT+TGG - chr5_1:16585797-16585816 Msa0720560:intron 30.0%
ACAATATTCTTGTATCTCAC+CGG + chr5_1:16585823-16585842 None:intergenic 30.0%
TACTTCACAAATCATGTTCA+TGG - chr5_1:16586204-16586223 Msa0720560:intron 30.0%
ATTTCTCATGTTATGTAGGA+GGG + chr5_1:16586256-16586275 None:intergenic 30.0%
TGACATTTCTCATGTTATGT+AGG + chr5_1:16586260-16586279 None:intergenic 30.0%
CATAACATGAGAAATGTCAA+AGG - chr5_1:16586261-16586280 Msa0720560:intron 30.0%
CAGCATTACAAGAACATATA+TGG - chr5_1:16586487-16586506 Msa0720560:intron 30.0%
! AGAAATAAGAAGTGCAGAAA+AGG + chr5_1:16587331-16587350 None:intergenic 30.0%
ATTCTATGCATTGCAACAAA+AGG + chr5_1:16587492-16587511 None:intergenic 30.0%
AGAATCATAGCTATATAAGC+TGG - chr5_1:16587507-16587526 Msa0720560:intron 30.0%
!!! TATAAGCTGGTTTTTTGCAA+TGG - chr5_1:16587520-16587539 Msa0720560:intron 30.0%
!! AAGTTCGTTTGTTTTTCCTT+TGG - chr5_1:16587643-16587662 Msa0720560:intron 30.0%
GGAAATAAGTAAGCAAATGA+GGG + chr5_1:16587671-16587690 None:intergenic 30.0%
AGGAAATAAGTAAGCAAATG+AGG + chr5_1:16587672-16587691 None:intergenic 30.0%
CTCAACACCACAAAAAAAAA+AGG - chr5_1:16587926-16587945 Msa0720560:CDS 30.0%
! ATCCTTTTCATCTTTGTAGT+TGG - chr5_1:16588023-16588042 Msa0720560:CDS 30.0%
TTCCAACTACAAAGATGAAA+AGG + chr5_1:16588028-16588047 None:intergenic 30.0%
AAGGTATAACATCTTAATGG+AGG - chr5_1:16588211-16588230 Msa0720560:intron 30.0%
AGGTATAACATCTTAATGGA+GGG - chr5_1:16588212-16588231 Msa0720560:intron 30.0%
TTTCTTCATTCACCATTTGT+AGG - chr5_1:16588280-16588299 Msa0720560:intron 30.0%
ACCTTCTCTCAAAAAAGAAA+AGG - chr5_1:16588446-16588465 Msa0720560:CDS 30.0%
!!! ACCTTTTCTTTTTTGAGAGA+AGG + chr5_1:16588450-16588469 None:intergenic 30.0%
! TTACAGTGATAATGTGTACT+TGG - chr5_1:16588672-16588691 Msa0720560:intron 30.0%
! TAGGTATGTTTCAAGTATGA+TGG + chr5_1:16588939-16588958 None:intergenic 30.0%
!! TTTTAGGTAAATGGTGTTGG+AGG - chr5_1:16584356-16584375 Msa0720560:three_prime_UTR 35.0%
AAAATCCGTGAAGGAATTAG+TGG - chr5_1:16584496-16584515 Msa0720560:CDS 35.0%
!! GGTTTGAGGAAAGTATTCAA+AGG - chr5_1:16584533-16584552 Msa0720560:CDS 35.0%
!! TGAGGAAAGTATTCAAAGGA+AGG - chr5_1:16584537-16584556 Msa0720560:CDS 35.0%
!! GAAAGTATTCAAAGGAAGGT+TGG - chr5_1:16584541-16584560 Msa0720560:CDS 35.0%
!! ATTCAAAGGAAGGTTGGTAA+TGG - chr5_1:16584547-16584566 Msa0720560:CDS 35.0%
! CATAGATGTTTTCCTTATGC+TGG - chr5_1:16584674-16584693 Msa0720560:intron 35.0%
! TAGATGTTTTCCTTATGCTG+GGG - chr5_1:16584676-16584695 Msa0720560:intron 35.0%
!! GCTTTCTAATGTTACTTTGC+AGG - chr5_1:16584777-16584796 Msa0720560:intron 35.0%
CATTTGATACACACCACAAA+CGG + chr5_1:16584854-16584873 None:intergenic 35.0%
GTGTGTATCAAATGCTTATG+AGG - chr5_1:16584860-16584879 Msa0720560:intron 35.0%
! CTCTGAAGGTTTCAATTTGT+GGG - chr5_1:16584938-16584957 Msa0720560:intron 35.0%
ACGCAACAAATTGTCTACAA+AGG - chr5_1:16584972-16584991 Msa0720560:intron 35.0%
TCTGACAACATGTTAAAGCA+TGG - chr5_1:16585109-16585128 Msa0720560:intron 35.0%
CAACATGTTAAAGCATGGAT+TGG - chr5_1:16585114-16585133 Msa0720560:intron 35.0%
!!! TTTAGCTTTTAGCCATCCTA+AGG + chr5_1:16585343-16585362 None:intergenic 35.0%
CACCACATATGATAACCAAA+TGG + chr5_1:16585378-16585397 None:intergenic 35.0%
CATTTGGTTATCATATGTGG+TGG - chr5_1:16585376-16585395 Msa0720560:intron 35.0%
! CAACAACCCTTTGTTTGTTT+GGG - chr5_1:16585399-16585418 Msa0720560:intron 35.0%
! AACAACCCTTTGTTTGTTTG+GGG - chr5_1:16585400-16585419 Msa0720560:intron 35.0%
ACAACGTAACCTGAAGAAAA+AGG + chr5_1:16585444-16585463 None:intergenic 35.0%
AAAGTATACTCAGTAGCACA+AGG + chr5_1:16585496-16585515 None:intergenic 35.0%
! TGAGTATACTTTGTTTCCTG+TGG - chr5_1:16585504-16585523 Msa0720560:intron 35.0%
! TTAAAACAAGTCACTTTGGC+CGG - chr5_1:16585801-16585820 Msa0720560:intron 35.0%
GTTCAAATGTTGTCCATAAC+AGG - chr5_1:16586157-16586176 Msa0720560:intron 35.0%
ACTTTATGGTCATCCTGTTA+TGG + chr5_1:16586173-16586192 None:intergenic 35.0%
ATGACCATAAAGTCAGTTGA+TGG - chr5_1:16586180-16586199 Msa0720560:intron 35.0%
TGACCATAAAGTCAGTTGAT+GGG - chr5_1:16586181-16586200 Msa0720560:intron 35.0%
TTTCTCATGTTATGTAGGAG+GGG + chr5_1:16586255-16586274 None:intergenic 35.0%
CATTTCTCATGTTATGTAGG+AGG + chr5_1:16586257-16586276 None:intergenic 35.0%
TCATCACGAAAAGGATTGTA+AGG - chr5_1:16586371-16586390 Msa0720560:intron 35.0%
AAAAGGATTGTAAGGTCACA+TGG - chr5_1:16586379-16586398 Msa0720560:intron 35.0%
CGGTGCATTTAAGTGAAAAA+TGG - chr5_1:16586633-16586652 Msa0720560:intron 35.0%
! GAGTTTTTGCTTCACCATAA+GGG + chr5_1:16586740-16586759 None:intergenic 35.0%
! AGAGTTTTTGCTTCACCATA+AGG + chr5_1:16586741-16586760 None:intergenic 35.0%
ATTCATCACTTGAGTAGACA+TGG - chr5_1:16586769-16586788 Msa0720560:intron 35.0%
CACACAGCCCTAAATAAATA+GGG + chr5_1:16587177-16587196 None:intergenic 35.0%
TTTAAATAGGGAAGAGCAAG+GGG + chr5_1:16587393-16587412 None:intergenic 35.0%
GTTTAAATAGGGAAGAGCAA+GGG + chr5_1:16587394-16587413 None:intergenic 35.0%
CAAGGCAAAGGGTTTAAATA+GGG + chr5_1:16587405-16587424 None:intergenic 35.0%
!!! TTTCAGGATTTTTGGCGTAA+TGG + chr5_1:16587447-16587466 None:intergenic 35.0%
!! TTCAGGCTTTTCAGGATTTT+TGG + chr5_1:16587455-16587474 None:intergenic 35.0%
AATCCTGAAAAGCCTGAAAA+TGG - chr5_1:16587457-16587476 Msa0720560:intron 35.0%
AAATGCAGAAACAAAGTGGA+AGG + chr5_1:16587567-16587586 None:intergenic 35.0%
AGAGAAATGCAGAAACAAAG+TGG + chr5_1:16587571-16587590 None:intergenic 35.0%
! TACTTATTTCCTTTTCCTGC+AGG - chr5_1:16587680-16587699 Msa0720560:intron 35.0%
TCTAAAAATCCTGCAGGAAA+AGG + chr5_1:16587692-16587711 None:intergenic 35.0%
! ATCTCTTCTAAAAATCCTGC+AGG + chr5_1:16587698-16587717 None:intergenic 35.0%
!!! ATCCTCTTCTTTTTTGCAGT+TGG - chr5_1:16587869-16587888 Msa0720560:intron 35.0%
TTCCAACTGCAAAAAAGAAG+AGG + chr5_1:16587874-16587893 None:intergenic 35.0%
!!! TCCTTTGGTTTTCATATGCA+GGG + chr5_1:16587898-16587917 None:intergenic 35.0%
!!! ATCCTTTGGTTTTCATATGC+AGG + chr5_1:16587899-16587918 None:intergenic 35.0%
TGTTGAGAAGATCTATCCTT+TGG + chr5_1:16587913-16587932 None:intergenic 35.0%
ATCCTTTGCTTTCACAGTAA+GGG + chr5_1:16588052-16588071 None:intergenic 35.0%
TATCCTTTGCTTTCACAGTA+AGG + chr5_1:16588053-16588072 None:intergenic 35.0%
AAGCAAAGGATAGATAGCAA+AGG - chr5_1:16588061-16588080 Msa0720560:CDS 35.0%
!! ATCCTTTTCGTTTTTGCAGT+TGG - chr5_1:16588137-16588156 Msa0720560:intron 35.0%
TTCCAACTGCAAAAACGAAA+AGG + chr5_1:16588142-16588161 None:intergenic 35.0%
! GTCCTTTGCTTTGATAGTAA+GGG + chr5_1:16588166-16588185 None:intergenic 35.0%
! TGTCCTTTGCTTTGATAGTA+AGG + chr5_1:16588167-16588186 None:intergenic 35.0%
ACTTGTGAGAATCTAAATGG+TGG + chr5_1:16588351-16588370 None:intergenic 35.0%
! GTGACTTGTGAGAATCTAAA+TGG + chr5_1:16588354-16588373 None:intergenic 35.0%
ACAAGTTCTGTATGTTACGT+TGG + chr5_1:16588403-16588422 None:intergenic 35.0%
!! TTTTGAGAGAAGGTGAATTC+AGG + chr5_1:16588440-16588459 None:intergenic 35.0%
!! CAAACACTTTGAGACATTGT+GGG + chr5_1:16588756-16588775 None:intergenic 35.0%
CTTAATCTACACAAATCTGC+AGG + chr5_1:16588810-16588829 None:intergenic 35.0%
GAGATAGTGAAAATCCGTGA+AGG - chr5_1:16584487-16584506 Msa0720560:CDS 40.0%
! TTTTTGGACTGATTGTTGGG+TGG - chr5_1:16584582-16584601 Msa0720560:intron 40.0%
! TTTTGGACTGATTGTTGGGT+GGG - chr5_1:16584583-16584602 Msa0720560:intron 40.0%
TTGAGACAGATATTTGGCAG+TGG - chr5_1:16584803-16584822 Msa0720560:intron 40.0%
GTATCAAATGCTTATGAGGC+AGG - chr5_1:16584864-16584883 Msa0720560:intron 40.0%
CCACAAATTGAAACCTTCAG+AGG + chr5_1:16584940-16584959 None:intergenic 40.0%
! CCTCTGAAGGTTTCAATTTG+TGG - chr5_1:16584937-16584956 Msa0720560:intron 40.0%
TGAAGGTTTCAATTTGTGGG+TGG - chr5_1:16584941-16584960 Msa0720560:intron 40.0%
GAACTCCGAAAATAGGACAA+TGG + chr5_1:16585089-16585108 None:intergenic 40.0%
TGTCAGAGAACTCCGAAAAT+AGG + chr5_1:16585096-16585115 None:intergenic 40.0%
ACTTAGTTCGCTTACTCTTC+AGG - chr5_1:16585177-16585196 Msa0720560:intron 40.0%
TTCACTCCATAACACCCAAA+CGG + chr5_1:16585250-16585269 None:intergenic 40.0%
! TTTGGGTGTTATGGAGTGAA+AGG - chr5_1:16585250-16585269 Msa0720560:intron 40.0%
! GCAACAACCCTTTGTTTGTT+TGG - chr5_1:16585398-16585417 Msa0720560:intron 40.0%
CCAATCCCCAAACAAACAAA+GGG + chr5_1:16585408-16585427 None:intergenic 40.0%
ACCAATCCCCAAACAAACAA+AGG + chr5_1:16585409-16585428 None:intergenic 40.0%
TATCCATCATTCGTGAGACA+AGG + chr5_1:16585947-16585966 None:intergenic 40.0%
!! CATAGTAGCTTCAGGTTGAT+GGG + chr5_1:16586104-16586123 None:intergenic 40.0%
! GTACCCATCAACTGACTTTA+TGG + chr5_1:16586187-16586206 None:intergenic 40.0%
TCAAAGGGCCAATATTGAAC+TGG - chr5_1:16586277-16586296 Msa0720560:intron 40.0%
ACGTGATCATCATCACGAAA+AGG - chr5_1:16586362-16586381 Msa0720560:intron 40.0%
CTTAAATGCACCGTACCTTA+CGG + chr5_1:16586626-16586645 None:intergenic 40.0%
CTACTCAAGTGATGAATGTG+TGG + chr5_1:16586766-16586785 None:intergenic 40.0%
!! AATTGGATTTGGGTTTGGTG+TGG + chr5_1:16586914-16586933 None:intergenic 40.0%
CCACACAGCCCTAAATAAAT+AGG + chr5_1:16587178-16587197 None:intergenic 40.0%
! CCTATTTATTTAGGGCTGTG+TGG - chr5_1:16587175-16587194 Msa0720560:intron 40.0%
GGAAAAAAACACAGTGTGTC+AGG - chr5_1:16587277-16587296 Msa0720560:intron 40.0%
GGTTTAAATAGGGAAGAGCA+AGG + chr5_1:16587395-16587414 None:intergenic 40.0%
GCAAGGCAAAGGGTTTAAAT+AGG + chr5_1:16587406-16587425 None:intergenic 40.0%
ATGGAGATGAGTGAATGAGA+TGG + chr5_1:16587428-16587447 None:intergenic 40.0%
!! ACTCCATTTTCAGGCTTTTC+AGG + chr5_1:16587463-16587482 None:intergenic 40.0%
CTATGCATTGCAACAAAAGG+AGG + chr5_1:16587489-16587508 None:intergenic 40.0%
GGAAGGAAGCAAAAGAATGA+TGG + chr5_1:16587550-16587569 None:intergenic 40.0%
TAAGCAAATGAGGGATCCAA+AGG + chr5_1:16587662-16587681 None:intergenic 40.0%
AGCCCTTACTATCAAAGCAA+AGG - chr5_1:16588161-16588180 Msa0720560:intron 40.0%
ACTATGGTTAAGCCAGTTGT+AGG + chr5_1:16588378-16588397 None:intergenic 40.0%
GTATGTTACGTTGGACACTA+TGG + chr5_1:16588394-16588413 None:intergenic 40.0%
! AGTTGTCAAAGTGTCTGATG+AGG + chr5_1:16588726-16588745 None:intergenic 40.0%
! TTTGAGACATTGTGGGATGA+AGG + chr5_1:16588749-16588768 None:intergenic 40.0%
!! CCAAACACTTTGAGACATTG+TGG + chr5_1:16588757-16588776 None:intergenic 40.0%
! CCACAATGTCTCAAAGTGTT+TGG - chr5_1:16588754-16588773 Msa0720560:CDS 40.0%
CAAGGAGTTAGGTGGTTTGA+GGG - chr5_1:16584303-16584322 Msa0720560:three_prime_UTR 45.0%
!! TTGGAGGTGTCTAGTGGATA+GGG - chr5_1:16584372-16584391 Msa0720560:three_prime_UTR 45.0%
!! AAGGTGTTGTGCTCTCGTTA+CGG - chr5_1:16584409-16584428 Msa0720560:three_prime_UTR 45.0%
! AGAGGGGGCACATTAAAGAA+GGG - chr5_1:16584437-16584456 Msa0720560:exon 45.0%
CCTCACCACTAATTCCTTCA+CGG + chr5_1:16584504-16584523 None:intergenic 45.0%
CGTGAAGGAATTAGTGGTGA+GGG - chr5_1:16584502-16584521 Msa0720560:CDS 45.0%
AAGGAATTAGTGGTGAGGGA+GGG - chr5_1:16584506-16584525 Msa0720560:CDS 45.0%
TTTGGACTGATTGTTGGGTG+GGG - chr5_1:16584584-16584603 Msa0720560:intron 45.0%
! TTCCCTTCTGAGAGAGGTTT+AGG - chr5_1:16584611-16584630 Msa0720560:intron 45.0%
! TTTTCCTTATGCTGGGGTGA+AGG - chr5_1:16584682-16584701 Msa0720560:intron 45.0%
GTATATCCATCACCCACAGT+AGG + chr5_1:16584832-16584851 None:intergenic 45.0%
!! GGTGATGGATATACCGTTTG+TGG - chr5_1:16584838-16584857 Msa0720560:intron 45.0%
GGAGATGCATAGCTACAATG+AGG - chr5_1:16584885-16584904 Msa0720560:intron 45.0%
! CATAGCTACAATGAGGCGTT+GGG - chr5_1:16584892-16584911 Msa0720560:intron 45.0%
!! ATAGCTACAATGAGGCGTTG+GGG - chr5_1:16584893-16584912 Msa0720560:intron 45.0%
GAGTCTCAATGGTGTGTATC+TGG - chr5_1:16585027-16585046 Msa0720560:intron 45.0%
CAATGGTGTGTATCTGGATG+TGG - chr5_1:16585033-16585052 Msa0720560:intron 45.0%
TAGTTCGCTTACTCTTCAGG+TGG - chr5_1:16585180-16585199 Msa0720560:intron 45.0%
TTGTATCGCTTTGCACCGTT+TGG - chr5_1:16585232-16585251 Msa0720560:intron 45.0%
TGTATCGCTTTGCACCGTTT+GGG - chr5_1:16585233-16585252 Msa0720560:intron 45.0%
TTTGCACCGTTTGGGTGTTA+TGG - chr5_1:16585241-16585260 Msa0720560:intron 45.0%
! CCCTTTGTTTGTTTGGGGAT+TGG - chr5_1:16585405-16585424 Msa0720560:intron 45.0%
TGACCTTGTCTCACGAATGA+TGG - chr5_1:16585941-16585960 Msa0720560:intron 45.0%
!! CCATAGTAGCTTCAGGTTGA+TGG + chr5_1:16586105-16586124 None:intergenic 45.0%
CCATCAACCTGAAGCTACTA+TGG - chr5_1:16586102-16586121 Msa0720560:intron 45.0%
CTAGAGTCCATAGTAGCTTC+AGG + chr5_1:16586112-16586131 None:intergenic 45.0%
ATGGACATGAGTGACCTGTA+TGG - chr5_1:16586223-16586242 Msa0720560:intron 45.0%
AGGAGGGGAAAATTCCATAC+AGG + chr5_1:16586240-16586259 None:intergenic 45.0%
GCCAATATTGAACTGGACGA+GGG - chr5_1:16586284-16586303 Msa0720560:intron 45.0%
ACCCTCGTCCAGTTCAATAT+TGG + chr5_1:16586288-16586307 None:intergenic 45.0%
GATAAATGCGGTACACCGTA+AGG - chr5_1:16586608-16586627 Msa0720560:intron 45.0%
TTGCGATGCACCACAAGATA+TGG - chr5_1:16586688-16586707 Msa0720560:intron 45.0%
CTTGTGTGCACCATATCTTG+TGG + chr5_1:16586701-16586720 None:intergenic 45.0%
! GCTTTTCCCCGTTAAAATCG+GGG + chr5_1:16586833-16586852 None:intergenic 45.0%
! GGCTTTTCCCCGTTAAAATC+GGG + chr5_1:16586834-16586853 None:intergenic 45.0%
! CGGCTTTTCCCCGTTAAAAT+CGG + chr5_1:16586835-16586854 None:intergenic 45.0%
GGGGAAAAGCCGAATTAACT+GGG - chr5_1:16586843-16586862 Msa0720560:intron 45.0%
AAAGCCGAATTAACTGGGTC+TGG - chr5_1:16586848-16586867 Msa0720560:intron 45.0%
AAGCCGAATTAACTGGGTCT+GGG - chr5_1:16586849-16586868 Msa0720560:intron 45.0%
TGTCAACTACCAGCTGAATC+CGG - chr5_1:16587113-16587132 Msa0720560:intron 45.0%
AATAGCACCTACTCAGACTC+AGG + chr5_1:16587153-16587172 None:intergenic 45.0%
! TCTTCTGCTGCGTTTTCAGA+AGG - chr5_1:16587198-16587217 Msa0720560:intron 45.0%
!!! CACTGTGTTTTTTTCCCAGC+TGG + chr5_1:16587273-16587292 None:intergenic 45.0%
! TCAGGTTTTCTGCACTTCTC+TGG - chr5_1:16587295-16587314 Msa0720560:intron 45.0%
GAATGAGATGGCAAGGCAAA+GGG + chr5_1:16587416-16587435 None:intergenic 45.0%
TGAATGAGATGGCAAGGCAA+AGG + chr5_1:16587417-16587436 None:intergenic 45.0%
GATGAGTGAATGAGATGGCA+AGG + chr5_1:16587423-16587442 None:intergenic 45.0%
GCCCTGCATATGAAAACCAA+AGG - chr5_1:16587894-16587913 Msa0720560:intron 45.0%
AGCCCTTACTGTGAAAGCAA+AGG - chr5_1:16588047-16588066 Msa0720560:CDS 45.0%
TCACAAGTCACACCTACAAC+TGG - chr5_1:16588363-16588382 Msa0720560:CDS 45.0%
ACAAATCTGCAGGTGATCTG+TGG + chr5_1:16588800-16588819 None:intergenic 45.0%
!! CAAAAAAAAATAAAAAAAAT+TGG + chr5_1:16586931-16586950 None:intergenic 5.0%
!!! TTTTTTTATTTTTTTTTGTT+TGG - chr5_1:16586933-16586952 Msa0720560:intron 5.0%
GCAAGGAGTTAGGTGGTTTG+AGG - chr5_1:16584302-16584321 Msa0720560:three_prime_UTR 50.0%
!! ATGGTGTTGGAGGTGTCTAG+TGG - chr5_1:16584366-16584385 Msa0720560:three_prime_UTR 50.0%
!! GTTGGAGGTGTCTAGTGGAT+AGG - chr5_1:16584371-16584390 Msa0720560:three_prime_UTR 50.0%
! AGGTGTCTAGTGGATAGGGA+GGG - chr5_1:16584376-16584395 Msa0720560:three_prime_UTR 50.0%
TAGGGAGGGGTTGTGGTTTA+AGG - chr5_1:16584390-16584409 Msa0720560:three_prime_UTR 50.0%
! GAGAGGGGGCACATTAAAGA+AGG - chr5_1:16584436-16584455 Msa0720560:exon 50.0%
! GAGGGGGCACATTAAAGAAG+GGG - chr5_1:16584438-16584457 Msa0720560:exon 50.0%
GCACATTAAAGAAGGGGCGA+GGG - chr5_1:16584444-16584463 Msa0720560:exon 50.0%
ATTAAAGAAGGGGCGAGGGA+TGG - chr5_1:16584448-16584467 Msa0720560:exon 50.0%
TTTCACTATCTCCCTCCACC+AGG + chr5_1:16584479-16584498 None:intergenic 50.0%
CCGTGAAGGAATTAGTGGTG+AGG - chr5_1:16584501-16584520 Msa0720560:CDS 50.0%
GAAGGAATTAGTGGTGAGGG+AGG - chr5_1:16584505-16584524 Msa0720560:CDS 50.0%
TTGGACTGATTGTTGGGTGG+GGG - chr5_1:16584585-16584604 Msa0720560:intron 50.0%
CGCCTAAACCTCTCTCAGAA+GGG + chr5_1:16584616-16584635 None:intergenic 50.0%
ACGCCTAAACCTCTCTCAGA+AGG + chr5_1:16584617-16584636 None:intergenic 50.0%
GCATAGCTACAATGAGGCGT+TGG - chr5_1:16584891-16584910 Msa0720560:intron 50.0%
!! TAGCTACAATGAGGCGTTGG+GGG - chr5_1:16584894-16584913 Msa0720560:intron 50.0%
!! AAGGATAACTTGGTGCGTCG+CGG - chr5_1:16584991-16585010 Msa0720560:intron 50.0%
!! ATGGATTGGTGCGCATTCAG+TGG - chr5_1:16585128-16585147 Msa0720560:intron 50.0%
CAGTAGCACAAGGTGTGCAA+AGG + chr5_1:16585486-16585505 None:intergenic 50.0%
!! AGTAGCTTCAGGTTGATGGG+TGG + chr5_1:16586101-16586120 None:intergenic 50.0%
GGCCAATATTGAACTGGACG+AGG - chr5_1:16586283-16586302 Msa0720560:intron 50.0%
CACATGGCATTCTCGTCACT+TGG - chr5_1:16586395-16586414 Msa0720560:intron 50.0%
ATGCGGTACACCGTAAGGTA+CGG - chr5_1:16586613-16586632 Msa0720560:intron 50.0%
GCAACACAACCTGCATCTGT+CGG - chr5_1:16586791-16586810 Msa0720560:intron 50.0%
CAACACAACCTGCATCTGTC+GGG - chr5_1:16586792-16586811 Msa0720560:intron 50.0%
TTCCCCGTTAAAATCGGGGT+GGG + chr5_1:16586829-16586848 None:intergenic 50.0%
TTTCCCCGTTAAAATCGGGG+TGG + chr5_1:16586830-16586849 None:intergenic 50.0%
CGGGGAAAAGCCGAATTAAC+TGG - chr5_1:16586842-16586861 Msa0720560:intron 50.0%
GCACCCAGACCCAGTTAATT+CGG + chr5_1:16586855-16586874 None:intergenic 50.0%
ATTAACTGGGTCTGGGTGCA+TGG - chr5_1:16586856-16586875 Msa0720560:intron 50.0%
TTAACTGGGTCTGGGTGCAT+GGG - chr5_1:16586857-16586876 Msa0720560:intron 50.0%
AGACTCAGGAATGGCTGAGA+AGG + chr5_1:16587139-16587158 None:intergenic 50.0%
AGCCATTCCTGAGTCTGAGT+AGG - chr5_1:16587143-16587162 Msa0720560:intron 50.0%
CACCTACTCAGACTCAGGAA+TGG + chr5_1:16587148-16587167 None:intergenic 50.0%
TGAGAGAGAGAGTAAGAGGG+AGG + chr5_1:16587361-16587380 None:intergenic 50.0%
GCGTGAGAGAGAGAGTAAGA+GGG + chr5_1:16587364-16587383 None:intergenic 50.0%
AGCGTGAGAGAGAGAGTAAG+AGG + chr5_1:16587365-16587384 None:intergenic 50.0%
!! AGGAGGCTGACTCCATTTTC+AGG + chr5_1:16587472-16587491 None:intergenic 50.0%
! TAGGTGGTTTGAGGGTGCGA+CGG - chr5_1:16584311-16584330 Msa0720560:three_prime_UTR 55.0%
! TTTGAGGGTGCGACGGTTGA+AGG - chr5_1:16584318-16584337 Msa0720560:three_prime_UTR 55.0%
! GAGGTGTCTAGTGGATAGGG+AGG - chr5_1:16584375-16584394 Msa0720560:three_prime_UTR 55.0%
! GGTGTCTAGTGGATAGGGAG+GGG - chr5_1:16584377-16584396 Msa0720560:three_prime_UTR 55.0%
! TAGTGGATAGGGAGGGGTTG+TGG - chr5_1:16584383-16584402 Msa0720560:three_prime_UTR 55.0%
GTTGTGCTCTCGTTACGGTG+AGG - chr5_1:16584414-16584433 Msa0720560:three_prime_UTR 55.0%
CTCTCGTTACGGTGAGGAGA+GGG - chr5_1:16584420-16584439 Msa0720560:three_prime_UTR 55.0%
TCTCGTTACGGTGAGGAGAG+GGG - chr5_1:16584421-16584440 Msa0720560:three_prime_UTR 55.0%
GGCACATTAAAGAAGGGGCG+AGG - chr5_1:16584443-16584462 Msa0720560:exon 55.0%
GAATTAGTGGTGAGGGAGGG+AGG - chr5_1:16584509-16584528 Msa0720560:CDS 55.0%
TCCTTATGCTGGGGTGAAGG+AGG - chr5_1:16584685-16584704 Msa0720560:intron 55.0%
CCTTATGCTGGGGTGAAGGA+GGG - chr5_1:16584686-16584705 Msa0720560:intron 55.0%
CTTATGCTGGGGTGAAGGAG+GGG - chr5_1:16584687-16584706 Msa0720560:intron 55.0%
GGGTGAAGGAGGGGAAACTT+GGG - chr5_1:16584696-16584715 Msa0720560:intron 55.0%
GGTGAAGGAGGGGAAACTTG+GGG - chr5_1:16584697-16584716 Msa0720560:intron 55.0%
GTGAAGGAGGGGAAACTTGG+GGG - chr5_1:16584698-16584717 Msa0720560:intron 55.0%
! GAGGCGGCGTTTGTTAGCTT+GGG - chr5_1:16584723-16584742 Msa0720560:intron 55.0%
! GCGTTTGTTAGCTTGGGAGG+AGG - chr5_1:16584729-16584748 Msa0720560:intron 55.0%
AGCTTGGGAGGAGGACTTAG+TGG - chr5_1:16584738-16584757 Msa0720560:intron 55.0%
GCTTGGGAGGAGGACTTAGT+GGG - chr5_1:16584739-16584758 Msa0720560:intron 55.0%
CTTGGGAGGAGGACTTAGTG+GGG - chr5_1:16584740-16584759 Msa0720560:intron 55.0%
TTGGGAGGAGGACTTAGTGG+GGG - chr5_1:16584741-16584760 Msa0720560:intron 55.0%
TTGGCAGTGGTGTCCTACTG+TGG - chr5_1:16584816-16584835 Msa0720560:intron 55.0%
TGGCAGTGGTGTCCTACTGT+GGG - chr5_1:16584817-16584836 Msa0720560:intron 55.0%
TGGTGTCCTACTGTGGGTGA+TGG - chr5_1:16584823-16584842 Msa0720560:intron 55.0%
! TGCCCCCACCCCGATTTTAA+CGG - chr5_1:16586822-16586841 Msa0720560:intron 55.0%
TCCCCGTTAAAATCGGGGTG+GGG + chr5_1:16586828-16586847 None:intergenic 55.0%
GACCTGAATAGGTCCTGGTG+TGG - chr5_1:16586882-16586901 Msa0720560:intron 55.0%
TGCCACACCAGGACCTATTC+AGG + chr5_1:16586887-16586906 None:intergenic 55.0%
TCAGGAATGGCTGAGAAGGC+CGG + chr5_1:16587135-16587154 None:intergenic 55.0%
!! GCTGCGTTTTCAGAAGGTGC+AGG - chr5_1:16587204-16587223 Msa0720560:intron 55.0%
! AGGCCAGCTGCGTTTTCAGA+AGG - chr5_1:16587224-16587243 Msa0720560:intron 55.0%
! GCACCTTCTGAAAACGCAGC+TGG + chr5_1:16587204-16587223 None:intergenic 55.0%
!! GCTGCGTTTTCAGAAGGTGC+AGG - chr5_1:16587204-16587223 Msa0720560:intron 55.0%
ATAGGGAAGAGCAAGGGGAG+AGG + chr5_1:16587388-16587407 None:intergenic 55.0%
GCTCTCGTTACGGTGAGGAG+AGG - chr5_1:16584419-16584438 Msa0720560:three_prime_UTR 60.0%
CTCGTTACGGTGAGGAGAGG+GGG - chr5_1:16584422-16584441 Msa0720560:three_prime_UTR 60.0%
! GGATGGTTCTGCCTGGTGGA+GGG - chr5_1:16584465-16584484 Msa0720560:CDS 60.0%
TTAGTGGTGAGGGAGGGAGG+TGG - chr5_1:16584512-16584531 Msa0720560:CDS 60.0%
TGAGGGAGGGAGGTGGTTTG+AGG - chr5_1:16584519-16584538 Msa0720560:CDS 60.0%
GACTGATTGTTGGGTGGGGG+AGG - chr5_1:16584588-16584607 Msa0720560:intron 60.0%
! GGGAGGTTCCCTTCTGAGAG+AGG - chr5_1:16584605-16584624 Msa0720560:intron 60.0%
CCCTCCTTCACCCCAGCATA+AGG + chr5_1:16584689-16584708 None:intergenic 60.0%
GGGGTGAAGGAGGGGAAACT+TGG - chr5_1:16584695-16584714 Msa0720560:intron 60.0%
AAGGAGGGGAAACTTGGGGG+TGG - chr5_1:16584701-16584720 Msa0720560:intron 60.0%
! GGAGGCGGCGTTTGTTAGCT+TGG - chr5_1:16584722-16584741 Msa0720560:intron 60.0%
! GCGGCGTTTGTTAGCTTGGG+AGG - chr5_1:16584726-16584745 Msa0720560:intron 60.0%
GTTAAAATCGGGGTGGGGGC+AGG + chr5_1:16586823-16586842 None:intergenic 60.0%
!! GCCCCCACCCCGATTTTAAC+GGG - chr5_1:16586823-16586842 Msa0720560:intron 60.0%
CCCCGTTAAAATCGGGGTGG+GGG + chr5_1:16586827-16586846 None:intergenic 60.0%
!! CCCCCACCCCGATTTTAACG+GGG - chr5_1:16586824-16586843 Msa0720560:intron 60.0%
GTGCATGGGCGGACCTGAAT+AGG - chr5_1:16586871-16586890 Msa0720560:intron 60.0%
CTGAGAAGGCCGGATTCAGC+TGG + chr5_1:16587125-16587144 None:intergenic 60.0%
! TGCAGGCCAGCTGCGTTTTC+AGG - chr5_1:16587221-16587240 Msa0720560:intron 60.0%
! AGCTGGCCTGAAAACGCAGC+TGG + chr5_1:16587256-16587275 None:intergenic 60.0%
!! AGCTGCGTTTTCAGGCCAGC+TGG - chr5_1:16587255-16587274 Msa0720560:intron 60.0%
!! GCTGCGTTTTCAGGCCAGCT+GGG - chr5_1:16587256-16587275 Msa0720560:intron 60.0%
! CGAGGGATGGTTCTGCCTGG+TGG - chr5_1:16584461-16584480 Msa0720560:CDS 65.0%
! GGGATGGTTCTGCCTGGTGG+AGG - chr5_1:16584464-16584483 Msa0720560:CDS 65.0%
GAGGGGAAACTTGGGGGTGG+AGG - chr5_1:16584704-16584723 Msa0720560:intron 65.0%
GGGAAACTTGGGGGTGGAGG+CGG - chr5_1:16584707-16584726 Msa0720560:intron 65.0%
AGGTGGGACCCGACAGATGC+AGG + chr5_1:16586803-16586822 None:intergenic 65.0%
AAATCGGGGTGGGGGCAGGT+GGG + chr5_1:16586819-16586838 None:intergenic 65.0%
AAAATCGGGGTGGGGGCAGG+TGG + chr5_1:16586820-16586839 None:intergenic 65.0%
ACTGGGTCTGGGTGCATGGG+CGG - chr5_1:16586860-16586879 Msa0720560:intron 65.0%
GGGCGGACCTGAATAGGTCC+TGG - chr5_1:16586877-16586896 Msa0720560:intron 65.0%
GGTGTGGCACTTGCCACACC+AGG + chr5_1:16586898-16586917 None:intergenic 65.0%
! GGGCGAGGGATGGTTCTGCC+TGG - chr5_1:16584458-16584477 Msa0720560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16584298 16588978 16584298 ID=Msa0720560;Name=Msa0720560
chr5_1 mRNA 16584298 16588978 16584298 ID=Msa0720560-mRNA-1;Parent=Msa0720560;Name=Msa0720560-mRNA-1;_AED=0.69;_eAED=0.76;_QI=0|0|0.14|0.42|1|1|7|155|319
chr5_1 exon 16584298 16584598 16584298 ID=Msa0720560-mRNA-1:exon:6309;Parent=Msa0720560-mRNA-1
chr5_1 exon 16585043 16585120 16585043 ID=Msa0720560-mRNA-1:exon:6308;Parent=Msa0720560-mRNA-1
chr5_1 exon 16585960 16586059 16585960 ID=Msa0720560-mRNA-1:exon:6307;Parent=Msa0720560-mRNA-1
chr5_1 exon 16587751 16587822 16587751 ID=Msa0720560-mRNA-1:exon:6306;Parent=Msa0720560-mRNA-1
chr5_1 exon 16587911 16588093 16587911 ID=Msa0720560-mRNA-1:exon:6305;Parent=Msa0720560-mRNA-1
chr5_1 exon 16588358 16588477 16588358 ID=Msa0720560-mRNA-1:exon:6304;Parent=Msa0720560-mRNA-1
chr5_1 exon 16588718 16588978 16588718 ID=Msa0720560-mRNA-1:exon:6303;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16588718 16588978 16588718 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16588358 16588477 16588358 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16587911 16588093 16587911 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16587751 16587822 16587751 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16585960 16586059 16585960 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16585043 16585120 16585043 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 CDS 16584453 16584598 16584453 ID=Msa0720560-mRNA-1:cds;Parent=Msa0720560-mRNA-1
chr5_1 three_prime_UTR 16584298 16584452 16584298 ID=Msa0720560-mRNA-1:three_prime_utr;Parent=Msa0720560-mRNA-1
Gene Sequence

>Msa0720560

ATGAGCAAGGAGTTAGGTGGTTTGAGGGTGCGACGGTTGAAGGAATTTAATATTGCTATTTTAGGTAAATGGTGTTGGAGGTGTCTAGTGGATAGGGAGGGGTTGTGGTTTAAGGTGTTGTGCTCTCGTTACGGTGAGGAGAGGGGGCACATTAAAGAAGGGGCGAGGGATGGTTCTGCCTGGTGGAGGGAGATAGTGAAAATCCGTGAAGGAATTAGTGGTGAGGGAGGGAGGTGGTTTGAGGAAAGTATTCAAAGGAAGGATATTGAGACAGATATTTGGCAGTGGTGTCCTACTGTGGGTGATGGATATACCGTTTGTGGTGTGTATCAAATGCTTATGAGGCAGGAGATGCATAGCTACAATGAGGCGTTGGGGGCTTTCGCTTACTCTTCAGGTGGCATTAAATCTCGTCGTTCTTTTTTGCAAATTGTATCGCTTTGCACCGTTTGGGTGTTATGGAGTGAAAGGAATAACATGCTATTCTCCAACAAGACTAAATCACTTATGCAGCTTCTAGATAAAGTTAAAATTTCTACCTTAGGATGGCTAAAAGCTAAAATTGTTACGTTGTTGTACTCTTGTTATGTTCTCCTTTGCACACCTTGTGCTACTGAGTATACTTTGTTTCCTGTGAAGGTGCAGGCCAGCTGCGTTTTCAGAAGGTGCAGGCCAGCTGCGTTTTCAGGCCAGCTGGGAAAAAAACACAGTGTGTCAGGTTTTCTGCACTTCTCTGTTGGAAGCCCTTACTATCAAAGCAAAGGACAGATCTTCTCTAAATTGACAAGTTTAAGGTATAACATCTTAATGGAGGTGATAATGTGTACTTGGACAACAGCAAGCAAGCATGTAAACAAGTCCTCATCAGACACTTTGACAACTCCTTCATCCCACAATGTCTCAAAGTGTTTGGATAGAGTCAAGCAAGCATGTCCACAGATCACCTGCAGATTTGTGTAG
Protein sequence

>Msa0720560

MSKELGGLRVRRLKEFNIAILGKWCWRCLVDREGLWFKVLCSRYGEERGHIKEGARDGSAWWREIVKIREGISGEGGRWFEESIQRKDIETDIWQWCPTVGDGYTVCGVYQMLMRQEMHSYNEALGAFAYSSGGIKSRRSFLQIVSLCTVWVLWSERNNMLFSNKTKSLMQLLDKVKISTLGWLKAKIVTLLYSCYVLLCTPCATEYTLFPVKVQASCVFRRCRPAAFSGQLGKKHSVSGFLHFSVGSPYYQSKGQIFSKLTSLRYNILMEVIMCTWTTASKHVNKSSSDTLTTPSSHNVSKCLDRVKQACPQITCRFV*