AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346370 MtrunA17_Chr3g0092651 97.445 274 7 0 1 274 1 274 0.0 553
Msa1346370 MtrunA17_Chr4g0060561 76.923 273 58 3 1 270 1 271 2.45e-154 432
Msa1346370 MtrunA17_Chr5g0401741 57.951 283 96 5 1 267 1 276 2.49e-108 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346370 AT5G62500.1 74.621 264 64 2 1 263 1 262 1.85e-145 409
Msa1346370 AT3G47690.1 72.000 275 61 4 1 271 1 263 5.41e-142 400
Msa1346370 AT5G67270.1 55.926 270 103 4 1 256 1 268 8.35e-103 303

Find 84 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTCATGCTTCAGTTTC+TGG 0.116159 tig0008869:-45928 None:intergenic
TGTAATTAAATGACACTTTC+TGG 0.138568 tig0008869:-46054 None:intergenic
ACCGAAATGTTAAGAGTTTA+AGG 0.177216 tig0008869:+44340 Msa1346370:CDS
AGCTAACCTGAGTTTCTATT+TGG 0.188642 tig0008869:-44420 None:intergenic
TCCCGTGGAGCGTAGGATTA+AGG 0.235106 tig0008869:+44308 Msa1346370:CDS
CGTTACTGTGATTCTGTTAA+TGG 0.239870 tig0008869:+44028 Msa1346370:CDS
GAAGCATGACTTCTCATTTC+CGG 0.295665 tig0008869:+45937 Msa1346370:exon
CCAGTTGACCTTGATATCTT+AGG 0.307940 tig0008869:-44517 None:intergenic
ACCTTAAACTCTTAACATTT+CGG 0.311351 tig0008869:-44341 None:intergenic
GAAGTTAACAGGCTTGTTAA+AGG 0.316943 tig0008869:+43965 Msa1346370:CDS
TGTAACGGAAGGGAATTAAA+TGG 0.329487 tig0008869:-40812 None:intergenic
CCCGTGGAGCGTAGGATTAA+GGG 0.337587 tig0008869:+44309 Msa1346370:CDS
GGGAGAAATTTCAGGGGAGG+GGG 0.345253 tig0008869:-40904 None:intergenic
GGCAGCATATTGAAGTTAAC+AGG 0.350762 tig0008869:+43954 Msa1346370:intron
AGAGAGGAAAGGTGAGAGAA+AGG 0.356242 tig0008869:-40777 None:intergenic
CATTCTCCAGTTCTGATGTC+TGG 0.371007 tig0008869:-45152 None:intergenic
TAATTCGTCAGCAGAGATTC+AGG 0.371636 tig0008869:+44555 Msa1346370:CDS
ATTCATTGCTAGGCTGCATC+TGG 0.385662 tig0008869:+42794 Msa1346370:intron
CAAAATCTCAGTGGATCTCT+TGG 0.386039 tig0008869:+45077 Msa1346370:CDS
GGAGAAATTTCAGGGGAGGG+GGG 0.394370 tig0008869:-40903 None:intergenic
TGCAAAAGAGTCGGCATTAG+AGG 0.399645 tig0008869:+45858 Msa1346370:CDS
TTTCTCCTTGTAAGCTTGGA+TGG 0.403167 tig0008869:+46091 Msa1346370:three_prime_UTR
GGCGACGAGTATAGGGATAA+TGG 0.410039 tig0008869:+41044 Msa1346370:CDS
TCAAACACTACGAATAATAC+TGG 0.415660 tig0008869:+44381 Msa1346370:CDS
GTCGGCATTAGAGGAAGCTC+AGG 0.421605 tig0008869:+45867 Msa1346370:CDS
GAGAGGAAAGGTGAGAGAAA+GGG 0.423644 tig0008869:-40776 None:intergenic
CCATTTGCGACGAGAGAGAC+TGG 0.429040 tig0008869:+46011 Msa1346370:three_prime_UTR
GCTTGTTAAAGGCCGACCTT+TGG 0.439334 tig0008869:+43976 Msa1346370:CDS
CCAGTCTCTCTCGTCGCAAA+TGG 0.440764 tig0008869:-46011 None:intergenic
AAATGACACTTTCTGGCCAT+TGG 0.440857 tig0008869:-46047 None:intergenic
TGATACATCTAAAATACAAT+TGG 0.441329 tig0008869:-46170 None:intergenic
ATGTTAGACATGACGTATCC+AGG 0.448200 tig0008869:+42833 Msa1346370:CDS
CCTAAGATATCAAGGTCAAC+TGG 0.449224 tig0008869:+44517 Msa1346370:CDS
TTGTGCATCGGCACAACCCC+TGG 0.449890 tig0008869:-42851 None:intergenic
AGGCCGACCTTTGGACAACT+TGG 0.450161 tig0008869:+43985 Msa1346370:CDS
GGGGAGAAATTTCAGGGGAG+GGG 0.464101 tig0008869:-40905 None:intergenic
GACACTTTCTGGCCATTGGA+TGG 0.467117 tig0008869:-46043 None:intergenic
TAGGGGAGAAATTTCAGGGG+AGG 0.469676 tig0008869:-40907 None:intergenic
AAAGGTGAGAGAAAGGGAAA+CGG 0.477907 tig0008869:-40770 None:intergenic
TCAAAACTATAAAGTTCTAC+AGG 0.481633 tig0008869:+43003 Msa1346370:CDS
TCTATGCCAGACATCAGAAC+TGG 0.488709 tig0008869:+45146 Msa1346370:CDS
AGGTCAACTGGAGGATCGGA+TGG 0.491495 tig0008869:+44529 Msa1346370:CDS
ACTACGAATAATACTGGTTC+AGG 0.494201 tig0008869:+44387 Msa1346370:CDS
AGTAACGTTTCAGCCATTGT+AGG 0.497462 tig0008869:-44012 None:intergenic
AGGGGAGAAATTTCAGGGGA+GGG 0.503357 tig0008869:-40906 None:intergenic
CCCTTAATCCTACGCTCCAC+GGG 0.509614 tig0008869:-44309 None:intergenic
ACACTTTCTGGCCATTGGAT+GGG 0.513016 tig0008869:-46042 None:intergenic
GATACGTCATGTCTAACATC+TGG 0.514396 tig0008869:-42829 None:intergenic
ATTATCCATCCAAGCTTACA+AGG 0.517813 tig0008869:-46096 None:intergenic
ATCAAGGTCAACTGGAGGAT+CGG 0.530947 tig0008869:+44525 Msa1346370:CDS
GGTCAACTGGAGGATCGGAT+GGG 0.532130 tig0008869:+44530 Msa1346370:CDS
AAGCTTGGATGGATAATCAA+TGG 0.533283 tig0008869:+46102 Msa1346370:three_prime_UTR
GATTCAGGCCTTGTCCAAGC+AGG 0.534074 tig0008869:+44570 Msa1346370:CDS
ACTATAATCCCGTGGAGCGT+AGG 0.534515 tig0008869:+44301 Msa1346370:CDS
ACCCTTAATCCTACGCTCCA+CGG 0.538190 tig0008869:-44310 None:intergenic
TTACATTAATCAAACATTGG+AGG 0.542731 tig0008869:+45891 Msa1346370:CDS
CTAAGTCCAAATAGAAACTC+AGG 0.542973 tig0008869:+44414 Msa1346370:CDS
CATGACTTCTCATTTCCGGC+TGG 0.555619 tig0008869:+45941 Msa1346370:exon
GGCTTACATTAATCAAACAT+TGG 0.556676 tig0008869:+45888 Msa1346370:CDS
GTGTAGGACCTAAGATATCA+AGG 0.558318 tig0008869:+44509 Msa1346370:intron
GTCAACTGGAGGATCGGATG+GGG 0.564150 tig0008869:+44531 Msa1346370:CDS
TGGAAATTGTTCCCATCCAA+TGG 0.566483 tig0008869:+46031 Msa1346370:three_prime_UTR
TGTTAGACATGACGTATCCA+GGG 0.569863 tig0008869:+42834 Msa1346370:CDS
AAGTTGTACCTGCTTGGACA+AGG 0.572645 tig0008869:-44578 None:intergenic
TAATCTCTCTCGCATTGAAG+AGG 0.585059 tig0008869:+41128 Msa1346370:CDS
ATGGATGGTAAAGAGAAGAG+AGG 0.594427 tig0008869:-40793 None:intergenic
CAACAAGCTGAAAATTGCAA+AGG 0.596592 tig0008869:+43033 Msa1346370:CDS
ACGGAAGGGAATTAAATGGA+TGG 0.601471 tig0008869:-40808 None:intergenic
GCGTAGGATTAAGGGTGGAA+AGG 0.606069 tig0008869:+44317 Msa1346370:CDS
TGTGTTGCTACCTTGTGCAT+CGG 0.608007 tig0008869:-42863 None:intergenic
GTAGAAATGAGATTCTGAGT+TGG 0.610210 tig0008869:+41085 Msa1346370:CDS
TCTCTTATATGAATACCAGC+CGG 0.610311 tig0008869:-45956 None:intergenic
TGGTAAAGAGAAGAGAGGAA+AGG 0.613972 tig0008869:-40788 None:intergenic
AGCTTGTTTAACAAAGACCC+TGG 0.617051 tig0008869:-45983 None:intergenic
AGGGGTTGTGCCGATGCACA+AGG 0.630070 tig0008869:+42853 Msa1346370:CDS
ACTCCAAGTTGTCCAAAGGT+CGG 0.639935 tig0008869:-43988 None:intergenic
TGCTGCTGATGCAAAAGAGT+CGG 0.643139 tig0008869:+45849 Msa1346370:CDS
AGGAACTCCAAGTTGTCCAA+AGG 0.653402 tig0008869:-43992 None:intergenic
TACTGATCTCAAAATCTCAG+TGG 0.654360 tig0008869:+45068 Msa1346370:CDS
TACTGTGATTCTGTTAATGG+TGG 0.661559 tig0008869:+44031 Msa1346370:CDS
ACAACTTGGAGTTCCTACAA+TGG 0.679808 tig0008869:+43999 Msa1346370:CDS
GTGGAGCGTAGGATTAAGGG+TGG 0.682025 tig0008869:+44312 Msa1346370:CDS
AAGATATCAAGGTCAACTGG+AGG 0.692502 tig0008869:+44520 Msa1346370:CDS
GTTAGACATGACGTATCCAG+GGG 0.713529 tig0008869:+42835 Msa1346370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATAAAGAAAAAAG+GGG - tig0008869:40946-40965 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAAACT+CGG - tig0008869:41468-41487 None:intergenic 10.0%
!! ATTAAAAAAAAAAAAAAACC+TGG - tig0008869:41881-41900 None:intergenic 10.0%
!!! AGGTTTTTTTTTTTTTTTAA+TGG + tig0008869:41880-41899 Msa1346370:intron 10.0%
!!! TTTTTTTTTTTTTTAATGGT+TGG + tig0008869:41884-41903 Msa1346370:intron 10.0%
!!! TTTTTTTTTTTTTAATGGTT+GGG + tig0008869:41885-41904 Msa1346370:intron 10.0%
!!! TTACAAATAATTTTGAAATT+TGG + tig0008869:42933-42952 Msa1346370:intron 10.0%
!!! ATTAAAAGTAATTTATTTTC+GGG + tig0008869:43830-43849 Msa1346370:intron 10.0%
!!! AAAAGTACATTAATTAAAAA+CGG - tig0008869:44487-44506 None:intergenic 10.0%
!! TATAAAAATTTACAACTTAA+GGG - tig0008869:45454-45473 None:intergenic 10.0%
!! ATATAAAAATTTACAACTTA+AGG - tig0008869:45455-45474 None:intergenic 10.0%
!!! GTAAATTTTTATATTTCTTT+AGG + tig0008869:45461-45480 Msa1346370:intron 10.0%
!!! GTTTTAAACAAAACAAAAAA+TGG - tig0008869:40875-40894 None:intergenic 15.0%
!!! AGGTTAATTTGTTTTTAAAA+CGG + tig0008869:42715-42734 Msa1346370:intron 15.0%
!! TTCTACAATTAAATAGTTTA+CGG - tig0008869:43386-43405 None:intergenic 15.0%
!!! ACTAGTTTCATTTTTATTTT+TGG + tig0008869:43743-43762 Msa1346370:intron 15.0%
!!! CTAGTTTCATTTTTATTTTT+GGG + tig0008869:43744-43763 Msa1346370:intron 15.0%
!!! TTTCTAAAATTTTTTTGTTC+TGG + tig0008869:45368-45387 Msa1346370:intron 15.0%
!!! AAAATGAATTTAGAACATAT+GGG + tig0008869:45715-45734 Msa1346370:intron 15.0%
!! AAACAAAACAAAAAATGGAT+TGG - tig0008869:40870-40889 None:intergenic 20.0%
!! AAGAAAGAAAAAGAGAAAAA+TGG + tig0008869:41023-41042 Msa1346370:exon 20.0%
!!! ATTATATTTTTTTGACTTCG+TGG + tig0008869:41277-41296 Msa1346370:intron 20.0%
!! ATATTCAATGATATAGATTC+AGG + tig0008869:41607-41626 Msa1346370:intron 20.0%
!! TATTCAATGATATAGATTCA+GGG + tig0008869:41608-41627 Msa1346370:intron 20.0%
!!! ATTTTGAATTTGATTCAATC+TGG + tig0008869:41673-41692 Msa1346370:intron 20.0%
!! TAATAAAAGTAGTATGCATT+TGG + tig0008869:41711-41730 Msa1346370:intron 20.0%
!!! TGTTTTTCTCAAAAAAAAAG+AGG - tig0008869:42033-42052 None:intergenic 20.0%
!! TGCTATTAATTCTCATAAAA+GGG - tig0008869:42058-42077 None:intergenic 20.0%
!! ATGCTATTAATTCTCATAAA+AGG - tig0008869:42059-42078 None:intergenic 20.0%
!! AAATTGAAAAACTAAAGTAC+GGG - tig0008869:42180-42199 None:intergenic 20.0%
!! CAAATTGAAAAACTAAAGTA+CGG - tig0008869:42181-42200 None:intergenic 20.0%
!! AAACTAAAACAATGTGTATT+TGG - tig0008869:42412-42431 None:intergenic 20.0%
!! AGAAATCAATTCAAAAACAA+TGG - tig0008869:42695-42714 None:intergenic 20.0%
!!! TTGTTTTTGAATTGATTTCT+AGG + tig0008869:42695-42714 Msa1346370:intron 20.0%
!!! GGTTAATTTGTTTTTAAAAC+GGG + tig0008869:42716-42735 Msa1346370:intron 20.0%
!!! GTTAATTTGTTTTTAAAACG+GGG + tig0008869:42717-42736 Msa1346370:intron 20.0%
!! TATGAAATAGTATCTTTATC+AGG + tig0008869:43150-43169 Msa1346370:intron 20.0%
!! TGAAGGTTAATTTATTAACT+TGG + tig0008869:43188-43207 Msa1346370:intron 20.0%
!! CAACTTATTAGGAATATTAT+AGG - tig0008869:43287-43306 None:intergenic 20.0%
!!! TATTTAATTGTAGAAGCATA+TGG + tig0008869:43391-43410 Msa1346370:intron 20.0%
!! TCTACAATCAAATAGTTTAT+GGG - tig0008869:43448-43467 None:intergenic 20.0%
!! TTCTACAATCAAATAGTTTA+TGG - tig0008869:43449-43468 None:intergenic 20.0%
!! CATGTACATTTCAATATTTA+AGG + tig0008869:43613-43632 Msa1346370:intron 20.0%
!! TAAAAACGGAAAAAAGTTAA+GGG - tig0008869:44473-44492 None:intergenic 20.0%
!! TTAAAAACGGAAAAAAGTTA+AGG - tig0008869:44474-44493 None:intergenic 20.0%
!!! TATGTACTATATTTTCAGTT+GGG - tig0008869:44669-44688 None:intergenic 20.0%
!! ATATACAAGAACTAATAGAT+TGG - tig0008869:44834-44853 None:intergenic 20.0%
!! ATATACAAGAACTAATAGAT+TGG - tig0008869:44834-44853 None:intergenic 20.0%
!! AGTAACAATGAACAAAAAAA+AGG - tig0008869:45028-45047 None:intergenic 20.0%
!!! ACTTTTACTTTTCAAAACTA+CGG + tig0008869:45112-45131 Msa1346370:CDS 20.0%
!!! TTGAAGGTATTAGAAAATTT+AGG - tig0008869:45336-45355 None:intergenic 20.0%
!!! TTTTTATATTTCTTTAGGCA+AGG + tig0008869:45466-45485 Msa1346370:intron 20.0%
!! GTTTCTCTTTAAATATGATA+TGG + tig0008869:45559-45578 Msa1346370:intron 20.0%
!!! GAAAATGAATTTAGAACATA+TGG + tig0008869:45714-45733 Msa1346370:intron 20.0%
!!! AAATGAATTTAGAACATATG+GGG + tig0008869:45716-45735 Msa1346370:intron 20.0%
!!! TGATACATCTAAAATACAAT+TGG - tig0008869:46173-46192 None:intergenic 20.0%
! ATTTAGGGAAAAATGTGTAA+CGG - tig0008869:40830-40849 None:intergenic 25.0%
! AAAAACTCTTGTATTGTGTT+TGG + tig0008869:40991-41010 Msa1346370:five_prime_UTR 25.0%
! TCATTGAAGAAAAGAAATGA+GGG - tig0008869:41185-41204 None:intergenic 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG + tig0008869:41890-41909 Msa1346370:intron 25.0%
! CTTAATAACTATGCATGAAT+AGG - tig0008869:42151-42170 None:intergenic 25.0%
!!! CGTACTTTAGTTTTTCAATT+TGG + tig0008869:42179-42198 Msa1346370:intron 25.0%
! TTTCTCAAAAAACAAAGGTA+CGG - tig0008869:42325-42344 None:intergenic 25.0%
!! ATTTTTACCGAAATAAGAGA+AGG - tig0008869:42518-42537 None:intergenic 25.0%
! TATTTCGGTAAAAATTGTCT+TGG + tig0008869:42523-42542 Msa1346370:intron 25.0%
!!! ACATAGTTTTTGAGACAATT+TGG + tig0008869:42589-42608 Msa1346370:intron 25.0%
!!! TGAAATTTGGTGTTCATTTT+AGG + tig0008869:42946-42965 Msa1346370:intron 25.0%
! TCAAAACTATAAAGTTCTAC+AGG + tig0008869:43003-43022 Msa1346370:CDS 25.0%
! TGTTCTGCTTAAAATTTAGA+GGG - tig0008869:43071-43090 None:intergenic 25.0%
!! TAAATTTTAAGCAGAACACT+TGG + tig0008869:43073-43092 Msa1346370:intron 25.0%
! TAAGCTCAAAACAACTTATT+AGG - tig0008869:43298-43317 None:intergenic 25.0%
! TGTTTCCATATACTATCTTA+GGG - tig0008869:43333-43352 None:intergenic 25.0%
! CTACAATCAAATAGTTTATG+GGG - tig0008869:43447-43466 None:intergenic 25.0%
! TCCATAATCAAAGAGTTTAT+GGG - tig0008869:43514-43533 None:intergenic 25.0%
! TTGAAATGTACATGAACAAA+GGG - tig0008869:43607-43626 None:intergenic 25.0%
! ATTGAAATGTACATGAACAA+AGG - tig0008869:43608-43627 None:intergenic 25.0%
! TAACATAAGGATATACAACT+GGG - tig0008869:43673-43692 None:intergenic 25.0%
! TTAACATAAGGATATACAAC+TGG - tig0008869:43674-43693 None:intergenic 25.0%
! ATCCTTATGTTAAGATTTGA+TGG + tig0008869:43681-43700 Msa1346370:intron 25.0%
! TATAACTTGAGAACAAAAAC+TGG + tig0008869:43854-43873 Msa1346370:intron 25.0%
! ACTGGTATATGAAAATACTT+TGG + tig0008869:43872-43891 Msa1346370:intron 25.0%
! ATCAAAGCTGATTAAATGAT+AGG - tig0008869:44094-44113 None:intergenic 25.0%
!! TTTTGATGTAATTGCTTGAA+TGG + tig0008869:44168-44187 Msa1346370:intron 25.0%
! GTATTAGTGAAAATATGCAT+TGG - tig0008869:44201-44220 None:intergenic 25.0%
! ACATGAGAACATATATACAT+GGG - tig0008869:44238-44257 None:intergenic 25.0%
! AACATGAGAACATATATACA+TGG - tig0008869:44239-44258 None:intergenic 25.0%
! TCCTAAAAGGAAAATAAGAA+GGG - tig0008869:44281-44300 None:intergenic 25.0%
! TTCCTAAAAGGAAAATAAGA+AGG - tig0008869:44282-44301 None:intergenic 25.0%
! ACCTTAAACTCTTAACATTT+CGG - tig0008869:44344-44363 None:intergenic 25.0%
!!! ATTAATGTACTTTTGAGTGT+AGG + tig0008869:44493-44512 Msa1346370:intron 25.0%
!! CTATGTACTATATTTTCAGT+TGG - tig0008869:44670-44689 None:intergenic 25.0%
! TACTTTCTCTCAATATTCAT+GGG - tig0008869:44702-44721 None:intergenic 25.0%
! TTACTTTCTCTCAATATTCA+TGG - tig0008869:44703-44722 None:intergenic 25.0%
! TAATAGATTGGTAGGTAATT+GGG - tig0008869:44822-44841 None:intergenic 25.0%
! TAATAGATTGGTAGGTAATT+GGG - tig0008869:44822-44841 None:intergenic 25.0%
!!! TACTTTGCTTTTTGTTTTAC+AGG + tig0008869:45044-45063 Msa1346370:intron 25.0%
!!! CTTTTACTTTTCAAAACTAC+GGG + tig0008869:45113-45132 Msa1346370:CDS 25.0%
! TTTGATTATTAACACATGCA+TGG - tig0008869:45660-45679 None:intergenic 25.0%
! GCATGTGTTAATAATCAAAT+AGG + tig0008869:45661-45680 Msa1346370:intron 25.0%
!!! ATGTTACTTTTTGCAGATAT+CGG + tig0008869:45804-45823 Msa1346370:intron 25.0%
! TTACATTAATCAAACATTGG+AGG + tig0008869:45891-45910 Msa1346370:CDS 25.0%
!! ATTCATATAAGAGATTTTCC+AGG + tig0008869:45965-45984 Msa1346370:three_prime_UTR 25.0%
!! TTCATATAAGAGATTTTCCA+GGG + tig0008869:45966-45985 Msa1346370:three_prime_UTR 25.0%
! TGTAATTAAATGACACTTTC+TGG - tig0008869:46057-46076 None:intergenic 25.0%
!! ATTTTAGGGGAGAAATTTCA+GGG - tig0008869:40914-40933 None:intergenic 30.0%
AATAAAGAAAAAAGGGGTGA+AGG - tig0008869:40940-40959 None:intergenic 30.0%
CATTGAAGAAAAGAAATGAG+GGG - tig0008869:41184-41203 None:intergenic 30.0%
CTCATTGAAGAAAAGAAATG+AGG - tig0008869:41186-41205 None:intergenic 30.0%
TGCAGATCAAATAATTCCTA+GGG - tig0008869:41543-41562 None:intergenic 30.0%
ATGCAGATCAAATAATTCCT+AGG - tig0008869:41544-41563 None:intergenic 30.0%
!!! TTGATCTGCATGTTGATTTT+TGG + tig0008869:41553-41572 Msa1346370:intron 30.0%
!!! TGATCTGCATGTTGATTTTT+GGG + tig0008869:41554-41573 Msa1346370:intron 30.0%
AAAAATCTTACCCATGTTTC+TGG + tig0008869:41640-41659 Msa1346370:intron 30.0%
AATACAATTGCCAGAAACAT+GGG - tig0008869:41653-41672 None:intergenic 30.0%
TAATACAATTGCCAGAAACA+TGG - tig0008869:41654-41673 None:intergenic 30.0%
TAAAAGTAGTATGCATTTGG+CGG + tig0008869:41714-41733 Msa1346370:intron 30.0%
!!! GTACGTTTATCCTCTTTTTT+TGG + tig0008869:41940-41959 Msa1346370:intron 30.0%
!!! TCCTCTTTTTTTGGAGAAAA+TGG + tig0008869:41949-41968 Msa1346370:intron 30.0%
! TCCATTTTCTCCAAAAAAAG+AGG - tig0008869:41953-41972 None:intergenic 30.0%
!! TAGTCATTTTACTGAAGATG+AGG + tig0008869:42085-42104 Msa1346370:intron 30.0%
! TTCTCAAAAAACAAAGGTAC+GGG - tig0008869:42324-42343 None:intergenic 30.0%
TGAGACAATTTGGATAGTTA+AGG + tig0008869:42599-42618 Msa1346370:intron 30.0%
GTGTTCTGCTTAAAATTTAG+AGG - tig0008869:43072-43091 None:intergenic 30.0%
ATAGTATCTTTATCAGGATC+TGG + tig0008869:43156-43175 Msa1346370:intron 30.0%
TTATGACATGTGCACTTATA+TGG + tig0008869:43236-43255 Msa1346370:intron 30.0%
TATGACATGTGCACTTATAT+GGG + tig0008869:43237-43256 Msa1346370:intron 30.0%
CTGTTTCCATATACTATCTT+AGG - tig0008869:43334-43353 None:intergenic 30.0%
ACCCATAAACTCTTTGATTA+TGG + tig0008869:43510-43529 Msa1346370:intron 30.0%
GTCCATAATCAAAGAGTTTA+TGG - tig0008869:43515-43534 None:intergenic 30.0%
TGAAATGTACATGAACAAAG+GGG - tig0008869:43606-43625 None:intergenic 30.0%
AACATAAGGATATACAACTG+GGG - tig0008869:43672-43691 None:intergenic 30.0%
CTCCATCAAATCTTAACATA+AGG - tig0008869:43686-43705 None:intergenic 30.0%
TTAAGATTTGATGGAGTACA+AGG + tig0008869:43690-43709 Msa1346370:intron 30.0%
AAAAGACATGCAATTGATGA+AGG - tig0008869:43783-43802 None:intergenic 30.0%
! TCAATTGCATGTCTTTTATG+CGG + tig0008869:43786-43805 Msa1346370:intron 30.0%
AAGCTGATTAAATGATAGGA+AGG - tig0008869:44090-44109 None:intergenic 30.0%
!!! ACCCTTCTTATTTTCCTTTT+AGG + tig0008869:44277-44296 Msa1346370:intron 30.0%
ACCGAAATGTTAAGAGTTTA+AGG + tig0008869:44340-44359 Msa1346370:CDS 30.0%
TCAAACACTACGAATAATAC+TGG + tig0008869:44381-44400 Msa1346370:CDS 30.0%
! CAGGTACAACTTTGAAAATT+AGG + tig0008869:44589-44608 Msa1346370:intron 30.0%
CTAATAGATTGGTAGGTAAT+TGG - tig0008869:44823-44842 None:intergenic 30.0%
ACAAGAACTAATAGATTGGT+AGG - tig0008869:44830-44849 None:intergenic 30.0%
CTAATAGATTGGTAGGTAAT+TGG - tig0008869:44823-44842 None:intergenic 30.0%
ACAAGAACTAATAGATTGGT+AGG - tig0008869:44830-44849 None:intergenic 30.0%
!!! TTTTGTCACTTTATATCGCT+AGG + tig0008869:45401-45420 Msa1346370:intron 30.0%
AAATGACTCTTTCTATGGTT+TGG + tig0008869:45491-45510 Msa1346370:intron 30.0%
ATACAATTTCAAGAAACGCA+GGG - tig0008869:45594-45613 None:intergenic 30.0%
TATACAATTTCAAGAAACGC+AGG - tig0008869:45595-45614 None:intergenic 30.0%
GAAATTGTATATGCTTGCTT+TGG + tig0008869:45604-45623 Msa1346370:intron 30.0%
GGCTTACATTAATCAAACAT+TGG + tig0008869:45888-45907 Msa1346370:CDS 30.0%
! TGTAACGGAAGGGAATTAAA+TGG - tig0008869:40815-40834 None:intergenic 35.0%
!! TTTTAGGGGAGAAATTTCAG+GGG - tig0008869:40913-40932 None:intergenic 35.0%
!! GATTTTAGGGGAGAAATTTC+AGG - tig0008869:40915-40934 None:intergenic 35.0%
! ATGGATAGCGCATATTTTGT+CGG + tig0008869:41063-41082 Msa1346370:CDS 35.0%
GTAGAAATGAGATTCTGAGT+TGG + tig0008869:41085-41104 Msa1346370:CDS 35.0%
TGTGTTGGGTCAATTCATAT+AGG + tig0008869:41366-41385 Msa1346370:intron 35.0%
GTGTTGGGTCAATTCATATA+GGG + tig0008869:41367-41386 Msa1346370:intron 35.0%
!!! ATTTTTGGGTGTTCACATTG+TGG + tig0008869:41568-41587 Msa1346370:intron 35.0%
AAAAAAACCTGGTGCTTCAT+GGG - tig0008869:41870-41889 None:intergenic 35.0%
AAAAAAAACCTGGTGCTTCA+TGG - tig0008869:41871-41890 None:intergenic 35.0%
AAAAAAAAAGAGGATGTGCG+TGG - tig0008869:42023-42042 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG + tig0008869:42089-42108 Msa1346370:intron 35.0%
AATAGTGATATCGACACAGT+TGG + tig0008869:42113-42132 Msa1346370:intron 35.0%
CGGCATTTCTCAAAAAACAA+AGG - tig0008869:42330-42349 None:intergenic 35.0%
! AAGCAAGCCTTCTCTTATTT+CGG + tig0008869:42508-42527 Msa1346370:intron 35.0%
! AGTCAATAGTTTTTCCGTTG+TGG + tig0008869:42547-42566 Msa1346370:intron 35.0%
CAAGATACTTTCTACCACAA+CGG - tig0008869:42564-42583 None:intergenic 35.0%
CGTAGATGAAATATCAGAAG+AGG - tig0008869:42913-42932 None:intergenic 35.0%
CAACAAGCTGAAAATTGCAA+AGG + tig0008869:43033-43052 Msa1346370:CDS 35.0%
GATAAGTCCAAATGCATGAA+TGG - tig0008869:43216-43235 None:intergenic 35.0%
! CAATTGCATGTCTTTTATGC+GGG + tig0008869:43787-43806 Msa1346370:intron 35.0%
! AATTGCATGTCTTTTATGCG+GGG + tig0008869:43788-43807 Msa1346370:intron 35.0%
GAGCTAATTTGATTACCATG+TGG + tig0008869:43933-43952 Msa1346370:intron 35.0%
!! GAAGTTAACAGGCTTGTTAA+AGG + tig0008869:43965-43984 Msa1346370:CDS 35.0%
CGTTACTGTGATTCTGTTAA+TGG + tig0008869:44028-44047 Msa1346370:CDS 35.0%
TACTGTGATTCTGTTAATGG+TGG + tig0008869:44031-44050 Msa1346370:CDS 35.0%
ACGGGATTATAGTTCCTAAA+AGG - tig0008869:44294-44313 None:intergenic 35.0%
!! TTTTAGGAACTATAATCCCG+TGG + tig0008869:44293-44312 Msa1346370:intron 35.0%
!! ACTACGAATAATACTGGTTC+AGG + tig0008869:44387-44406 Msa1346370:CDS 35.0%
CTAAGTCCAAATAGAAACTC+AGG + tig0008869:44414-44433 Msa1346370:CDS 35.0%
AGCTAACCTGAGTTTCTATT+TGG - tig0008869:44423-44442 None:intergenic 35.0%
! TTTTCAAAGTTGTACCTGCT+TGG - tig0008869:44587-44606 None:intergenic 35.0%
GATTGAGACATTGAAAACAC+AGG - tig0008869:44800-44819 None:intergenic 35.0%
ACAGGCATGTATATTCTATC+AGG - tig0008869:44907-44926 None:intergenic 35.0%
GATTGAGACATTGAAAACAC+AGG - tig0008869:44800-44819 None:intergenic 35.0%
TACTGATCTCAAAATCTCAG+TGG + tig0008869:45068-45087 Msa1346370:CDS 35.0%
CATAGAAGTAGACATGATCA+CGG - tig0008869:45254-45273 None:intergenic 35.0%
TTCTAATACCTTCAATCGTC+TGG + tig0008869:45341-45360 Msa1346370:intron 35.0%
AGGAGAAATGACTCTTTCTA+TGG + tig0008869:45486-45505 Msa1346370:intron 35.0%
ACACCAAAATGTCAGATGTA+GGG - tig0008869:45541-45560 None:intergenic 35.0%
AACACCAAAATGTCAGATGT+AGG - tig0008869:45542-45561 None:intergenic 35.0%
TACAATTTCAAGAAACGCAG+GGG - tig0008869:45593-45612 None:intergenic 35.0%
TTCTTCACACATTATCAAGC+TGG - tig0008869:45636-45655 None:intergenic 35.0%
TCTCTTATATGAATACCAGC+CGG - tig0008869:45959-45978 None:intergenic 35.0%
! TGTTTTTCTCCTTGTAAGCT+TGG + tig0008869:46087-46106 Msa1346370:three_prime_UTR 35.0%
ATTATCCATCCAAGCTTACA+AGG - tig0008869:46099-46118 None:intergenic 35.0%
AAGCTTGGATGGATAATCAA+TGG + tig0008869:46102-46121 Msa1346370:three_prime_UTR 35.0%
AAAGGTGAGAGAAAGGGAAA+CGG - tig0008869:40773-40792 None:intergenic 40.0%
TGGTAAAGAGAAGAGAGGAA+AGG - tig0008869:40791-40810 None:intergenic 40.0%
ATGGATGGTAAAGAGAAGAG+AGG - tig0008869:40796-40815 None:intergenic 40.0%
ACGGAAGGGAATTAAATGGA+TGG - tig0008869:40811-40830 None:intergenic 40.0%
! GGGAAAAATGTGTAACGGAA+GGG - tig0008869:40825-40844 None:intergenic 40.0%
! AGGGAAAAATGTGTAACGGA+AGG - tig0008869:40826-40845 None:intergenic 40.0%
! AGGGGTGAAGGAAGATTTTA+GGG - tig0008869:40928-40947 None:intergenic 40.0%
! AAGGGGTGAAGGAAGATTTT+AGG - tig0008869:40929-40948 None:intergenic 40.0%
AGAAAAATGGCGACGAGTAT+AGG + tig0008869:41036-41055 Msa1346370:exon 40.0%
GAAAAATGGCGACGAGTATA+GGG + tig0008869:41037-41056 Msa1346370:exon 40.0%
TAATCTCTCTCGCATTGAAG+AGG + tig0008869:41128-41147 Msa1346370:CDS 40.0%
TGAAGAAAAGAAATGAGGGG+AGG - tig0008869:41181-41200 None:intergenic 40.0%
AACACATGAATTGTCAGGAC+CGG - tig0008869:41352-41371 None:intergenic 40.0%
GTCCTGACAATTCATGTGTT+GGG + tig0008869:41352-41371 Msa1346370:intron 40.0%
CTAGGGTGAGACATATCAAA+TGG - tig0008869:41526-41545 None:intergenic 40.0%
CATTTGATATGTCTCACCCT+AGG + tig0008869:41524-41543 Msa1346370:intron 40.0%
!! CAGAGGTATTTGGTCTTAGT+TGG - tig0008869:41761-41780 None:intergenic 40.0%
TACGGGTACGTTTAGCAAAA+CGG - tig0008869:41797-41816 None:intergenic 40.0%
! TTTTAATGGTTGGGTACGGA+CGG + tig0008869:41894-41913 Msa1346370:intron 40.0%
ACAATCAATTTCGAGAGGCT+AGG - tig0008869:42483-42502 None:intergenic 40.0%
CCACAACAATCAATTTCGAG+AGG - tig0008869:42488-42507 None:intergenic 40.0%
CCTCTCGAAATTGATTGTTG+TGG + tig0008869:42485-42504 Msa1346370:intron 40.0%
ATGAACACAGGGCATAAGAA+TGG - tig0008869:42776-42795 None:intergenic 40.0%
CCTAGCAATGAATGAACACA+GGG - tig0008869:42787-42806 None:intergenic 40.0%
GATACGTCATGTCTAACATC+TGG - tig0008869:42832-42851 None:intergenic 40.0%
ATGTTAGACATGACGTATCC+AGG + tig0008869:42833-42852 Msa1346370:CDS 40.0%
TGTTAGACATGACGTATCCA+GGG + tig0008869:42834-42853 Msa1346370:CDS 40.0%
GGATCTGGAAATGCTAATGA+AGG + tig0008869:43171-43190 Msa1346370:intron 40.0%
CTTGGTTCCATTCATGCATT+TGG + tig0008869:43206-43225 Msa1346370:intron 40.0%
TGTGCACTTATATGGGTGTT+TGG + tig0008869:43244-43263 Msa1346370:intron 40.0%
GTGCTCCCTAAGATAGTATA+TGG + tig0008869:43325-43344 Msa1346370:intron 40.0%
ACAACTGGGGAAGAGTAAAA+GGG - tig0008869:43659-43678 None:intergenic 40.0%
TACAACTGGGGAAGAGTAAA+AGG - tig0008869:43660-43679 None:intergenic 40.0%
TTTGATGGAGTACAAGGTTG+TGG + tig0008869:43696-43715 Msa1346370:intron 40.0%
GACATGCAATTGATGAAGGT+AGG - tig0008869:43779-43798 None:intergenic 40.0%
AACTTCAATATGCTGCCACA+TGG - tig0008869:43951-43970 None:intergenic 40.0%
GGCAGCATATTGAAGTTAAC+AGG + tig0008869:43954-43973 Msa1346370:intron 40.0%
ACAACTTGGAGTTCCTACAA+TGG + tig0008869:43999-44018 Msa1346370:CDS 40.0%
AGTAACGTTTCAGCCATTGT+AGG - tig0008869:44015-44034 None:intergenic 40.0%
GTGTAGGACCTAAGATATCA+AGG + tig0008869:44509-44528 Msa1346370:intron 40.0%
CCAGTTGACCTTGATATCTT+AGG - tig0008869:44520-44539 None:intergenic 40.0%
CCTAAGATATCAAGGTCAAC+TGG + tig0008869:44517-44536 Msa1346370:CDS 40.0%
AAGATATCAAGGTCAACTGG+AGG + tig0008869:44520-44539 Msa1346370:CDS 40.0%
TAATTCGTCAGCAGAGATTC+AGG + tig0008869:44555-44574 Msa1346370:CDS 40.0%
! AGTTGGGCTTTAATGCTGAA+AGG - tig0008869:44653-44672 None:intergenic 40.0%
GACATCGATGATATTCCTGA+TGG + tig0008869:44751-44770 Msa1346370:intron 40.0%
ACAGGCATGTATATGCTATC+AGG - tig0008869:44782-44801 None:intergenic 40.0%
CAAAATCTCAGTGGATCTCT+TGG + tig0008869:45077-45096 Msa1346370:CDS 40.0%
ACCTGTAAGAATTCCAGCAA+AGG + tig0008869:45176-45195 Msa1346370:intron 40.0%
ATATCGCTAGGTTTAGTGCA+TGG + tig0008869:45413-45432 Msa1346370:intron 40.0%
TATCGCTAGGTTTAGTGCAT+GGG + tig0008869:45414-45433 Msa1346370:intron 40.0%
TAGGTTTAGTGCATGGGATA+AGG + tig0008869:45420-45439 Msa1346370:intron 40.0%
AGATGTAGGGTAGAAAACAC+AGG - tig0008869:45528-45547 None:intergenic 40.0%
! CTACCCTACATCTGACATTT+TGG + tig0008869:45535-45554 Msa1346370:intron 40.0%
ACAATTTCAAGAAACGCAGG+GGG - tig0008869:45592-45611 None:intergenic 40.0%
CACACATTATCAAGCTGGAT+CGG - tig0008869:45631-45650 None:intergenic 40.0%
AGAAGTCATGCTTCAGTTTC+TGG - tig0008869:45931-45950 None:intergenic 40.0%
GAAGCATGACTTCTCATTTC+CGG + tig0008869:45937-45956 Msa1346370:exon 40.0%
! AGCTTGTTTAACAAAGACCC+TGG - tig0008869:45986-46005 None:intergenic 40.0%
TGGAAATTGTTCCCATCCAA+TGG + tig0008869:46031-46050 Msa1346370:three_prime_UTR 40.0%
! AAATGACACTTTCTGGCCAT+TGG - tig0008869:46050-46069 None:intergenic 40.0%
TTTCTCCTTGTAAGCTTGGA+TGG + tig0008869:46091-46110 Msa1346370:three_prime_UTR 40.0%
GAGAGGAAAGGTGAGAGAAA+GGG - tig0008869:40779-40798 None:intergenic 45.0%
AGAGAGGAAAGGTGAGAGAA+AGG - tig0008869:40780-40799 None:intergenic 45.0%
! GGGGTGAAGGAAGATTTTAG+GGG - tig0008869:40927-40946 None:intergenic 45.0%
GTCTCAGGTTCGAATTCTTC+CGG + tig0008869:41330-41349 Msa1346370:intron 45.0%
GGTCCTGACAATTCATGTGT+TGG + tig0008869:41351-41370 Msa1346370:intron 45.0%
GACCCAACACATGAATTGTC+AGG - tig0008869:41357-41376 None:intergenic 45.0%
!! TTGTTGCACTAGCTGGTCTT+TGG + tig0008869:41434-41453 Msa1346370:intron 45.0%
!! TGTTGCACTAGCTGGTCTTT+GGG + tig0008869:41435-41454 Msa1346370:intron 45.0%
!! GACCAAATACCTCTGAAGCA+CGG + tig0008869:41766-41785 Msa1346370:intron 45.0%
!! ACCAAATACCTCTGAAGCAC+GGG + tig0008869:41767-41786 Msa1346370:intron 45.0%
TTTGCTAAACGTACCCGTAC+CGG + tig0008869:41798-41817 Msa1346370:intron 45.0%
TTTAATGGTTGGGTACGGAC+GGG + tig0008869:41895-41914 Msa1346370:intron 45.0%
!! GTACTGCAGTGGTACTGATT+GGG + tig0008869:41918-41937 Msa1346370:intron 45.0%
TGTATTTGGCTGTGTTGCAC+GGG - tig0008869:42398-42417 None:intergenic 45.0%
GTGTATTTGGCTGTGTTGCA+CGG - tig0008869:42399-42418 None:intergenic 45.0%
CCCTGTGTTCATTCATTGCT+AGG + tig0008869:42784-42803 Msa1346370:intron 45.0%
GCCTAGCAATGAATGAACAC+AGG - tig0008869:42788-42807 None:intergenic 45.0%
ATTCATTGCTAGGCTGCATC+TGG + tig0008869:42794-42813 Msa1346370:intron 45.0%
GTTAGACATGACGTATCCAG+GGG + tig0008869:42835-42854 Msa1346370:CDS 45.0%
! TGTGTTGCTACCTTGTGCAT+CGG - tig0008869:42866-42885 None:intergenic 45.0%
GTACATGAACAAAGGGGCTT+TGG - tig0008869:43600-43619 None:intergenic 45.0%
ACTCCAAGTTGTCCAAAGGT+CGG - tig0008869:43991-44010 None:intergenic 45.0%
AGGAACTCCAAGTTGTCCAA+AGG - tig0008869:43995-44014 None:intergenic 45.0%
ATCAAGGTCAACTGGAGGAT+CGG + tig0008869:44525-44544 Msa1346370:CDS 45.0%
AAGTTGTACCTGCTTGGACA+AGG - tig0008869:44581-44600 None:intergenic 45.0%
! TGGGCTTTAATGCTGAAAGG+AGG - tig0008869:44650-44669 None:intergenic 45.0%
TCTATGCCAGACATCAGAAC+TGG + tig0008869:45146-45165 Msa1346370:CDS 45.0%
! CATTCTCCAGTTCTGATGTC+TGG - tig0008869:45155-45174 None:intergenic 45.0%
GCCTTTGCTGGAATTCTTAC+AGG - tig0008869:45180-45199 None:intergenic 45.0%
AGTAGACATGATCACGGTCT+AGG - tig0008869:45248-45267 None:intergenic 45.0%
GAAACACTCCAGACGATTGA+AGG - tig0008869:45352-45371 None:intergenic 45.0%
ATGCAGTACTCTTAGAAGCG+TGG + tig0008869:45744-45763 Msa1346370:intron 45.0%
TGCTGCTGATGCAAAAGAGT+CGG + tig0008869:45849-45868 Msa1346370:CDS 45.0%
TGCAAAAGAGTCGGCATTAG+AGG + tig0008869:45858-45877 Msa1346370:CDS 45.0%
! ACACTTTCTGGCCATTGGAT+GGG - tig0008869:46045-46064 None:intergenic 45.0%
!!! TTTTGTTTTATTTTTATTTA+GGG - tig0008869:40845-40864 None:intergenic 5.0%
!!! TTTTTGTTTTATTTTTATTT+AGG - tig0008869:40846-40865 None:intergenic 5.0%
!!! TTTTTTTAATAAAGAAAAAA+GGG - tig0008869:40947-40966 None:intergenic 5.0%
!!! TTTTTTTTAATAAAGAAAAA+AGG - tig0008869:40948-40967 None:intergenic 5.0%
!!! AATTAAAAGTAATTTATTTT+CGG + tig0008869:43829-43848 Msa1346370:intron 5.0%
!! ATAATTTAATGAAAAAATTA+TGG + tig0008869:44876-44895 Msa1346370:intron 5.0%
AGGGGAGAAATTTCAGGGGA+GGG - tig0008869:40909-40928 None:intergenic 50.0%
TAGGGGAGAAATTTCAGGGG+AGG - tig0008869:40910-40929 None:intergenic 50.0%
GGCGACGAGTATAGGGATAA+TGG + tig0008869:41044-41063 Msa1346370:CDS 50.0%
CTAGAGAGGAGCAGACTCTA+AGG - tig0008869:41310-41329 None:intergenic 50.0%
CTTAGAGTCTGCTCCTCTCT+AGG + tig0008869:41308-41327 Msa1346370:intron 50.0%
TTCGAACCTGAGACCTAGAG+AGG - tig0008869:41324-41343 None:intergenic 50.0%
TTTAATTGAGCCCCCGCTAG+TGG + tig0008869:41402-41421 Msa1346370:intron 50.0%
!! ACCCGTGCTTCAGAGGTATT+TGG - tig0008869:41771-41790 None:intergenic 50.0%
TTGCTAAACGTACCCGTACC+GGG + tig0008869:41799-41818 Msa1346370:intron 50.0%
TTAATGGTTGGGTACGGACG+GGG + tig0008869:41896-41915 Msa1346370:intron 50.0%
!! GGTACTGCAGTGGTACTGAT+TGG + tig0008869:41917-41936 Msa1346370:intron 50.0%
GGGGAGAAACTCATAAGCTC+TGG - tig0008869:43428-43447 None:intergenic 50.0%
TGGGGAAGAGTAAAAGGGCA+AGG - tig0008869:43654-43673 None:intergenic 50.0%
! GCTTGTTAAAGGCCGACCTT+TGG + tig0008869:43976-43995 Msa1346370:CDS 50.0%
ACTATAATCCCGTGGAGCGT+AGG + tig0008869:44301-44320 Msa1346370:CDS 50.0%
ACCCTTAATCCTACGCTCCA+CGG - tig0008869:44313-44332 None:intergenic 50.0%
GCGTAGGATTAAGGGTGGAA+AGG + tig0008869:44317-44336 Msa1346370:CDS 50.0%
! TGCTATCAGGTGCTACCATC+AGG - tig0008869:44769-44788 None:intergenic 50.0%
ACTACACTGCAAGCCTTTGC+TGG - tig0008869:45192-45211 None:intergenic 50.0%
CATGACTTCTCATTTCCGGC+TGG + tig0008869:45941-45960 Msa1346370:exon 50.0%
! GACACTTTCTGGCCATTGGA+TGG - tig0008869:46046-46065 None:intergenic 50.0%
GGAGAAATTTCAGGGGAGGG+GGG - tig0008869:40906-40925 None:intergenic 55.0%
GGGAGAAATTTCAGGGGAGG+GGG - tig0008869:40907-40926 None:intergenic 55.0%
GGGGAGAAATTTCAGGGGAG+GGG - tig0008869:40908-40927 None:intergenic 55.0%
TCTGCTCCTCTCTAGGTCTC+AGG + tig0008869:41315-41334 Msa1346370:intron 55.0%
!! GCACTAGCTGGTCTTTGGGA+CGG + tig0008869:41439-41458 Msa1346370:intron 55.0%
AGGCCGACCTTTGGACAACT+TGG + tig0008869:43985-44004 Msa1346370:CDS 55.0%
TCCCGTGGAGCGTAGGATTA+AGG + tig0008869:44308-44327 Msa1346370:CDS 55.0%
CCCTTAATCCTACGCTCCAC+GGG - tig0008869:44312-44331 None:intergenic 55.0%
CCCGTGGAGCGTAGGATTAA+GGG + tig0008869:44309-44328 Msa1346370:CDS 55.0%
GTGGAGCGTAGGATTAAGGG+TGG + tig0008869:44312-44331 Msa1346370:CDS 55.0%
AGGTCAACTGGAGGATCGGA+TGG + tig0008869:44529-44548 Msa1346370:CDS 55.0%
GGTCAACTGGAGGATCGGAT+GGG + tig0008869:44530-44549 Msa1346370:CDS 55.0%
GTCAACTGGAGGATCGGATG+GGG + tig0008869:44531-44550 Msa1346370:CDS 55.0%
! GATTCAGGCCTTGTCCAAGC+AGG + tig0008869:44570-44589 Msa1346370:CDS 55.0%
GTCGGCATTAGAGGAAGCTC+AGG + tig0008869:45867-45886 Msa1346370:CDS 55.0%
CCAGTCTCTCTCGTCGCAAA+TGG - tig0008869:46014-46033 None:intergenic 55.0%
CCATTTGCGACGAGAGAGAC+TGG + tig0008869:46011-46030 Msa1346370:three_prime_UTR 55.0%
AATTGAGCCCCCGCTAGTGG+AGG + tig0008869:41405-41424 Msa1346370:intron 60.0%
ATTGAGCCCCCGCTAGTGGA+GGG + tig0008869:41406-41425 Msa1346370:intron 60.0%
ACAATCCCGCCCTCCACTAG+CGG - tig0008869:41418-41437 None:intergenic 60.0%
GGCGGGATTGTTGCACTAGC+TGG + tig0008869:41427-41446 Msa1346370:intron 60.0%
! ACGGAGTACCCGTGCTTCAG+AGG - tig0008869:41778-41797 None:intergenic 60.0%
!! CGCGGGTACTGGTACACGTA+CGG + tig0008869:41827-41846 Msa1346370:intron 60.0%
! GTACGCACCCATGAAGCACC+AGG + tig0008869:41860-41879 Msa1346370:intron 60.0%
TTGGCTGTGTTGCACGGGTG+CGG - tig0008869:42393-42412 None:intergenic 60.0%
! TTGTGCATCGGCACAACCCC+TGG - tig0008869:42854-42873 None:intergenic 60.0%
! AGGGGTTGTGCCGATGCACA+AGG + tig0008869:42853-42872 Msa1346370:CDS 60.0%
AATCCCGCCCTCCACTAGCG+GGG - tig0008869:41416-41435 None:intergenic 65.0%
CAATCCCGCCCTCCACTAGC+GGG - tig0008869:41417-41436 None:intergenic 65.0%
! TACCCGTACCGGGTACTGCG+CGG + tig0008869:41809-41828 Msa1346370:intron 65.0%
TACCCGCGCAGTACCCGGTA+CGG - tig0008869:41815-41834 None:intergenic 65.0%
ACCAGTACCCGCGCAGTACC+CGG - tig0008869:41820-41839 None:intergenic 65.0%
!! GTACGGACGGGGTACTGCAG+TGG + tig0008869:41907-41926 Msa1346370:intron 65.0%
TACGGTACCCGGTACGGGTG+CGG - tig0008869:42369-42388 None:intergenic 65.0%
TGCGGGTACGGTACCCGGTA+CGG - tig0008869:42375-42394 None:intergenic 65.0%
GTGTTGCACGGGTGCGGGTA+CGG - tig0008869:42387-42406 None:intergenic 65.0%
TGGCTGTGTTGCACGGGTGC+GGG - tig0008869:42392-42411 None:intergenic 65.0%
ATCCCGCCCTCCACTAGCGG+GGG - tig0008869:41415-41434 None:intergenic 70.0%
! ACCCGTACCGGGTACTGCGC+GGG + tig0008869:41810-41829 Msa1346370:intron 70.0%
ACCCGCGCAGTACCCGGTAC+GGG - tig0008869:41814-41833 None:intergenic 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG + tig0008869:41816-41835 Msa1346370:intron 70.0%
GCGGGTGCGGGTACGGGATA+CGG - tig0008869:42350-42369 None:intergenic 70.0%
TACGGGTGCGGGTGCGGGTA+CGG - tig0008869:42357-42376 None:intergenic 70.0%
ACGGTACCCGGTACGGGTGC+GGG - tig0008869:42368-42387 None:intergenic 70.0%
GCGGGTACGGTACCCGGTAC+GGG - tig0008869:42374-42393 None:intergenic 70.0%
ACGGGTGCGGGTACGGTACC+CGG - tig0008869:42380-42399 None:intergenic 70.0%
GAGCCCCCGCTAGTGGAGGG+CGG + tig0008869:41409-41428 Msa1346370:intron 75.0%
AGCCCCCGCTAGTGGAGGGC+GGG + tig0008869:41410-41429 Msa1346370:intron 75.0%
ACGGGTGCGGGTGCGGGTAC+GGG - tig0008869:42356-42375 None:intergenic 75.0%
ACCCGCACCCGCACCCGTAC+CGG + tig0008869:42358-42377 Msa1346370:intron 75.0%
ACCCGGTACGGGTGCGGGTG+CGG - tig0008869:42363-42382 None:intergenic 75.0%
! CCCGGTACGGGTGCGGGTGC+GGG - tig0008869:42362-42381 None:intergenic 80.0%
! CCCGCACCCGCACCCGTACC+GGG + tig0008869:42359-42378 Msa1346370:intron 80.0%
Chromosome Type Strat End Strand Name
tig0008869 gene 40769 46242 40769 ID=Msa1346370;Name=Msa1346370
tig0008869 mRNA 40769 46242 40769 ID=Msa1346370-mRNA-1;Parent=Msa1346370;Name=Msa1346370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=273|1|1|1|1|1|8|297|274
tig0008869 exon 40769 41149 40769 ID=Msa1346370-mRNA-1:exon:5473;Parent=Msa1346370-mRNA-1
tig0008869 exon 42806 42874 42806 ID=Msa1346370-mRNA-1:exon:5474;Parent=Msa1346370-mRNA-1
tig0008869 exon 42968 43054 42968 ID=Msa1346370-mRNA-1:exon:5475;Parent=Msa1346370-mRNA-1
tig0008869 exon 43959 44065 43959 ID=Msa1346370-mRNA-1:exon:5476;Parent=Msa1346370-mRNA-1
tig0008869 exon 44299 44435 44299 ID=Msa1346370-mRNA-1:exon:5477;Parent=Msa1346370-mRNA-1
tig0008869 exon 44515 44591 44515 ID=Msa1346370-mRNA-1:exon:5478;Parent=Msa1346370-mRNA-1
tig0008869 exon 45066 45179 45066 ID=Msa1346370-mRNA-1:exon:5479;Parent=Msa1346370-mRNA-1
tig0008869 exon 45820 46242 45820 ID=Msa1346370-mRNA-1:exon:5480;Parent=Msa1346370-mRNA-1
tig0008869 five_prime_UTR 40769 41041 40769 ID=Msa1346370-mRNA-1:five_prime_utr;Parent=Msa1346370-mRNA-1
tig0008869 CDS 41042 41149 41042 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 42806 42874 42806 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 42968 43054 42968 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 43959 44065 43959 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 44299 44435 44299 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 44515 44591 44515 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 45066 45179 45066 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 CDS 45820 45945 45820 ID=Msa1346370-mRNA-1:cds;Parent=Msa1346370-mRNA-1
tig0008869 three_prime_UTR 45946 46242 45946 ID=Msa1346370-mRNA-1:three_prime_utr;Parent=Msa1346370-mRNA-1
Gene Sequence

>Msa1346370

ATGGCGACGAGTATAGGGATAATGGATAGCGCATATTTTGTCGGTAGAAATGAGATTCTGAGTTGGATCAATAAACGTCTTCAACTTAATCTCTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAGATGTTAGACATGACGTATCCAGGGGTTGTGCCGATGCACAAGGTGAATTTTGATGCAAAGACAGAGTATGATATGATTCAAAACTATAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGCAAAGCATATTGAAGTTAACAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTACAATGGCTGAAACGTTACTGTGATTCTGTTAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGTAGGATTAAGGGTGGAAAGGACCGAAATGTTAAGAGTTTAAGGTGCTCAAAGTCACTTCAATCAAACACTACGAATAATACTGGTTCAGGCGAACTAAGTCCAAATAGAAACTCAGGACCTAAGATATCAAGGTCAACTGGAGGATCGGATGGGGCTAATTCGTCAGCAGAGATTCAGGCCTTGTCCAAGCAGGTTACTGATCTCAAAATCTCAGTGGATCTCTTGGAAAAAGAAAGAGACTTTTACTTTTCAAAACTACGGGATATAGAAATTCTATGCCAGACATCAGAACTGGAGAATGAACCTATATCGGTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAAGAGTCGGCATTAGAGGAAGCTCAGGCTTACATTAATCAAACATTGGAGGCTGTTGAAGATCAACCAGAAACTGAAGCATGA

Protein sequence

>Msa1346370

MATSIGIMDSAYFVGRNEILSWINKRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIAKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRIKGGKDRNVKSLRCSKSLQSNTTNNTGSGELSPNRNSGPKISRSTGGSDGANSSAEIQALSKQVTDLKISVDLLEKERDFYFSKLRDIEILCQTSELENEPISVAIKKILYAADAKESALEEAQAYINQTLEAVEDQPETEA*