AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720770 MtrunA17_Chr5g0411611 96.682 422 13 1 1 421 1 422 0.0 843
Msa0720770 MtrunA17_Chr2g0291781 44.379 338 187 1 66 402 66 403 8.89e-106 318
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720770 AT4G37920.1 68.994 358 106 1 62 414 62 419 0.0 519
Msa0720770 AT1G36320.1 44.512 328 180 2 77 402 87 414 1.06e-100 306

Find 126 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTAGCTTTATTTCTTT+TGG 0.108146 5_1:-16971231 None:intergenic
GAAGAAGGCGGTGATGTTTA+AGG 0.190276 5_1:-16965746 None:intergenic
ATTAAGGATATCATCAAATT+TGG 0.219733 5_1:-16969653 None:intergenic
CGCCAAAGGAACTGCATAAA+TGG 0.220810 5_1:+16971461 Msa0720770:CDS
GAGAAGCACATAAGAGAATA+AGG 0.227082 5_1:-16965861 None:intergenic
TCTTCTATTTGTAGGTTATA+TGG 0.239611 5_1:+16972209 Msa0720770:three_prime_UTR
CGATAATACTCTGATGAATA+TGG 0.264010 5_1:+16969609 Msa0720770:CDS
TCTCCATGTCAGCTCTTCTT+TGG 0.269598 5_1:-16968902 None:intergenic
ACAAGTCCTCTTATATAAAA+AGG 0.271947 5_1:-16971814 None:intergenic
GTATAAAGCATTAGGATCTT+TGG 0.272436 5_1:-16971334 None:intergenic
AAGGAACAAACAACCTTAAC+TGG 0.300394 5_1:+16965692 Msa0720770:five_prime_UTR
ATTGAACCAATGAAGATCTT+TGG 0.302329 5_1:+16971924 Msa0720770:three_prime_UTR
TACTATTGAGAAGGAATATA+TGG 0.309142 5_1:+16971594 Msa0720770:CDS
AGTTTATGTGTGTTGGATTA+CGG 0.314212 5_1:-16972134 None:intergenic
TTTGCGCCTTCGTGCAACTA+TGG 0.323817 5_1:-16969396 None:intergenic
GTTTATGTGTGTTGGATTAC+GGG 0.329587 5_1:-16972133 None:intergenic
TTTCCTCCAGTCCTTTGATT+TGG 0.345589 5_1:-16968823 None:intergenic
TCATCTTCAGTCTCAGACTT+TGG 0.352848 5_1:-16971631 None:intergenic
TCCAGAGTTCTTCTATTTGT+AGG 0.353298 5_1:+16972201 Msa0720770:three_prime_UTR
TCTTACGTGTATAAAGCATT+AGG 0.355481 5_1:-16971342 None:intergenic
AGCTCTTCATGTTCCAGTTA+AGG 0.369762 5_1:-16965705 None:intergenic
CATCGATGGAAGGAGAATTA+AGG 0.374620 5_1:-16969669 None:intergenic
CTACCACCAAAGATCTTCAT+TGG 0.379198 5_1:-16971930 None:intergenic
AGACGAATGGAAGAAATATA+AGG 0.386608 5_1:+16968860 Msa0720770:CDS
TCTTTGTGGTCTTGTACAAT+TGG 0.391209 5_1:-16971188 None:intergenic
ATCCATTTATGCAGTTCCTT+TGG 0.397798 5_1:-16971463 None:intergenic
AAGGCAGAGAATCGCTCCTC+GGG 0.398295 5_1:-16971276 None:intergenic
GCAGATATTGAAATTGTAAA+GGG 0.417393 5_1:+16968744 Msa0720770:CDS
AGAAGCACATAAGAGAATAA+GGG 0.420610 5_1:-16965860 None:intergenic
AGTCCTTAGGCTGCTCTTTG+TGG 0.422808 5_1:-16971202 None:intergenic
TTGGCAACAGCTTTCTCCCC+TGG 0.430811 5_1:+16971297 Msa0720770:CDS
AACAACCTCTGAATAACTAT+AGG 0.451269 5_1:-16971559 None:intergenic
GAGTTCACCAAGGTCATGAT+AGG 0.455356 5_1:-16972111 None:intergenic
AGCAGATATTGAAATTGTAA+AGG 0.456266 5_1:+16968743 Msa0720770:CDS
GATCGAGAGAAGCGCGAGGC+AGG 0.460282 5_1:+16971712 Msa0720770:three_prime_UTR
GTATATAAGTTTATGTGTGT+TGG 0.461074 5_1:-16972141 None:intergenic
CACTTTGTTGTTGAGTCTGA+AGG 0.468751 5_1:+16965673 Msa0720770:five_prime_UTR
ATTATCATTGAAAGGGAAGA+AGG 0.468773 5_1:-16965761 None:intergenic
ACGCCAGCGGAAGTTGGTTA+AGG 0.469218 5_1:+16971982 Msa0720770:three_prime_UTR
CAGAGATTATTATCATTGAA+AGG 0.473233 5_1:-16965769 None:intergenic
AGTTGGCTCATGCCTCATAA+TGG 0.479037 5_1:+16972005 Msa0720770:three_prime_UTR
TATTGTTGATAAGCGGTGCT+TGG 0.480704 5_1:+16969749 Msa0720770:CDS
AACAGTGATTAGCTCTGACT+TGG 0.487517 5_1:+16972171 Msa0720770:three_prime_UTR
CGAGGAGCGATTCTCTGCCT+TGG 0.487679 5_1:+16971278 Msa0720770:CDS
GTTGAGTCCGCGCCATTATG+AGG 0.488665 5_1:-16972017 None:intergenic
AATTTACTTCATTGGGGAGA+AGG 0.490271 5_1:+16968946 Msa0720770:CDS
ATTGCAGATTGATGATGAAA+TGG 0.490861 5_1:+16969319 Msa0720770:intron
TGCAGCCCTCATGCCAGCAG+TGG 0.492495 5_1:-16972042 None:intergenic
TTGGCTTCATGTTCATCACC+AGG 0.493887 5_1:-16971315 None:intergenic
GCGGACTCAACTCCCACTGC+TGG 0.494993 5_1:+16972029 Msa0720770:three_prime_UTR
TTTGTTGAACAGGGATCGCC+AGG 0.496904 5_1:+16969551 Msa0720770:intron
TGCAGACACTTACGACAGCC+TGG 0.498459 5_1:+16969457 Msa0720770:CDS
TCAGAGGTTGTTTATCCTCA+AGG 0.499529 5_1:+16971570 Msa0720770:CDS
ATTTACTTCATTGGGGAGAA+GGG 0.501755 5_1:+16968947 Msa0720770:CDS
TGGAAGCACTACTAGCTTGT+GGG 0.505205 5_1:-16968701 None:intergenic
TACTCTACGCCAGCGGAAGT+TGG 0.506807 5_1:+16971976 Msa0720770:three_prime_UTR
GCGGAAGTTGGTTAAGGAGT+TGG 0.511304 5_1:+16971988 Msa0720770:three_prime_UTR
ATTGTTGATAAGCGGTGCTT+GGG 0.512100 5_1:+16969750 Msa0720770:CDS
TTTGTCAGTGATGAGCTTTG+TGG 0.512261 5_1:+16972088 Msa0720770:three_prime_UTR
ACAAGCTAGTAGTGCTTCCA+TGG 0.513617 5_1:+16968704 Msa0720770:CDS
AGAGATTATTATCATTGAAA+GGG 0.519432 5_1:-16965768 None:intergenic
ACCTACAAATAGAAGAACTC+TGG 0.521831 5_1:-16972202 None:intergenic
GAAGGAAGGAGTGAGAAAGT+TGG 0.523110 5_1:-16965797 None:intergenic
GCAGCCCTCATGCCAGCAGT+GGG 0.525391 5_1:-16972041 None:intergenic
AGAAAACCAAATCAAAGGAC+TGG 0.525978 5_1:+16968817 Msa0720770:CDS
GGAAGGAGTGAGAAAGTTGG+TGG 0.543401 5_1:-16965794 None:intergenic
ATTGGGGAGAAGGGTGAAGA+AGG 0.543592 5_1:+16968956 Msa0720770:CDS
TTTGTGGCCTATCATGACCT+TGG 0.543643 5_1:+16972104 Msa0720770:three_prime_UTR
TAAGCATTTAGCTCCTAGCC+TGG 0.543814 5_1:-16969569 None:intergenic
CTAGTCTACAGATATTTGAA+AGG 0.543879 5_1:-16971781 None:intergenic
AGTATTATCGTATGCACCGA+CGG 0.545659 5_1:-16969596 None:intergenic
ATGCCAAAGAAGAGCTGACA+TGG 0.545701 5_1:+16968899 Msa0720770:CDS
TATACTTACTAATTACTCAC+TGG 0.548106 5_1:-16972065 None:intergenic
CAAGGCAGAGAATCGCTCCT+CGG 0.548857 5_1:-16971277 None:intergenic
TGGCTTCATGTTCATCACCA+GGG 0.549446 5_1:-16971314 None:intergenic
CAATGAAGATCTTTGGTGGT+AGG 0.552094 5_1:+16971931 Msa0720770:three_prime_UTR
GAAGCACATAAGAGAATAAG+GGG 0.558474 5_1:-16965859 None:intergenic
GAACCAATGAAGATCTTTGG+TGG 0.566033 5_1:+16971927 Msa0720770:three_prime_UTR
TCATTGATATTGTTGATAAG+CGG 0.566445 5_1:+16969742 Msa0720770:CDS
GGCTTCATGTTCATCACCAG+GGG 0.567936 5_1:-16971313 None:intergenic
GGAGACGTTAGATGCTGCAC+AGG 0.568008 5_1:+16969630 Msa0720770:CDS
AATCAGATTTGAGAGAAGCT+AGG 0.570039 5_1:+16971524 Msa0720770:CDS
ATGGAAGCACTACTAGCTTG+TGG 0.571346 5_1:-16968702 None:intergenic
AGGACTTGTATTATTTCACC+AGG 0.575361 5_1:+16971828 Msa0720770:three_prime_UTR
AACTCCCACTGCTGGCATGA+GGG 0.575821 5_1:+16972037 Msa0720770:three_prime_UTR
TGAACAGGGATCGCCAGGCT+AGG 0.576051 5_1:+16969556 Msa0720770:intron
TAGTCTACAGATATTTGAAA+GGG 0.577368 5_1:-16971780 None:intergenic
TTGCTCTTCAACTTGAGCCA+TGG 0.579878 5_1:-16968721 None:intergenic
AAAACTTAGTAATTGAAACC+TGG 0.580671 5_1:-16971846 None:intergenic
CAACTCCCACTGCTGGCATG+AGG 0.582040 5_1:+16972036 Msa0720770:three_prime_UTR
ATCGAGAGAAGCGCGAGGCA+GGG 0.582318 5_1:+16971713 Msa0720770:three_prime_UTR
CTGCAATAAGAGAGAGGTAG+CGG 0.582443 5_1:-16969439 None:intergenic
TTTCTTACAAGCTACATCGA+TGG 0.582969 5_1:-16969683 None:intergenic
CGAAGGCGCAAAGATTTCAC+AGG 0.585357 5_1:+16969407 Msa0720770:CDS
CCTCAAGGATACTATTGAGA+AGG 0.585652 5_1:+16971585 Msa0720770:CDS
GAATGAGAAAACCAAATCAA+AGG 0.587964 5_1:+16968812 Msa0720770:CDS
TGCAACTATGGCATTAATGT+CGG 0.589061 5_1:-16969384 None:intergenic
TTACAAGCTACATCGATGGA+AGG 0.590443 5_1:-16969679 None:intergenic
AATTACCATCACGATCATCC+AGG 0.596203 5_1:-16969475 None:intergenic
ACTCCTTAACCAACTTCCGC+TGG 0.596835 5_1:-16971985 None:intergenic
ATCTACAACAATGAAGAATG+AGG 0.596937 5_1:+16969786 Msa0720770:CDS
AGGGGAGAAAGCTGTTGCCA+AGG 0.601801 5_1:-16971295 None:intergenic
CTGATCCTATAGTTATTCAG+AGG 0.605259 5_1:+16971554 Msa0720770:CDS
ATGAAGAAATGAATGAACGT+AGG 0.605985 5_1:+16971741 Msa0720770:three_prime_UTR
CAAAAGCCTTGCAAAAGCAA+AGG 0.608626 5_1:+16969708 Msa0720770:CDS
ACTTGATATTCAGAGACGAA+TGG 0.610480 5_1:+16968847 Msa0720770:CDS
AGACCACAAAGAGCAGCCTA+AGG 0.611087 5_1:+16971199 Msa0720770:CDS
AGGACACTATGAACTTCTCA+AGG 0.614050 5_1:+16969343 Msa0720770:CDS
GCTAAATGCTTATCTGCCGT+CGG 0.620400 5_1:+16969580 Msa0720770:CDS
CCTTCTCAATAGTATCCTTG+AGG 0.620696 5_1:-16971585 None:intergenic
ATAATTAAACAGTACGCCAA+AGG 0.628128 5_1:+16971447 Msa0720770:intron
ACTATGGCATTAATGTCGGT+CGG 0.629779 5_1:-16969380 None:intergenic
CAGATTGATGATGAAATGGA+AGG 0.633538 5_1:+16969323 Msa0720770:intron
GCTCATGCCTCATAATGGCG+CGG 0.634526 5_1:+16972010 Msa0720770:three_prime_UTR
AAGTGTCTGCAATAAGAGAG+AGG 0.645459 5_1:-16969445 None:intergenic
TGAACGTAGGAAGAATGAAG+TGG 0.646469 5_1:+16971754 Msa0720770:three_prime_UTR
AAACCAAATCAAAGGACTGG+AGG 0.655210 5_1:+16968820 Msa0720770:CDS
GACAGCCTGGATGATCGTGA+TGG 0.655334 5_1:+16969470 Msa0720770:CDS
GGAGAATGACCCAACAACGA+AGG 0.671271 5_1:+16968920 Msa0720770:CDS
TGGATTACGGGAGTTCACCA+AGG 0.675885 5_1:-16972121 None:intergenic
AGATGCATATAATCTGAACA+AGG 0.677895 5_1:+16971498 Msa0720770:CDS
AGGCAGAGAATCGCTCCTCG+GGG 0.691645 5_1:-16971275 None:intergenic
ATCATTGAAAGGGAAGAAGG+CGG 0.700462 5_1:-16965758 None:intergenic
AGTGATTTACTCTACGCCAG+CGG 0.725440 5_1:+16971969 Msa0720770:three_prime_UTR
GCTAAACATCATAGACCCCG+AGG 0.743122 5_1:+16971260 Msa0720770:CDS
TTAATGCCATAGTTGCACGA+AGG 0.765699 5_1:+16969390 Msa0720770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGAAAGATATATTT+GGG - chr5_1:16967829-16967848 None:intergenic 10.0%
!!! AATTTTTTGAAAGATATATT+TGG - chr5_1:16967830-16967849 None:intergenic 10.0%
!!! AAAATGAAATTTTAAAAATG+AGG - chr5_1:16969825-16969844 None:intergenic 10.0%
!!! ATTTTTAAAATTTCATTTTC+TGG + chr5_1:16969826-16969845 Msa0720770:intron 10.0%
!!! AAAAATATATCTTTTCTTTA+AGG + chr5_1:16971387-16971406 Msa0720770:intron 10.0%
!!! ATTTTTTTTATTTTTGTTCC+TGG + chr5_1:16967050-16967069 Msa0720770:intron 15.0%
!!! TATACATCTTTATTTTACTA+CGG + chr5_1:16967878-16967897 Msa0720770:intron 15.0%
!!! TAATATTTGAAATTCCTTTT+AGG + chr5_1:16968678-16968697 Msa0720770:intron 15.0%
!! AAATTTACTATCATATATCT+AGG + chr5_1:16969243-16969262 Msa0720770:intron 15.0%
!! TTTAATGAAGAAATAATACA+AGG - chr5_1:16971069-16971088 None:intergenic 15.0%
!! AGAGATTATTATCATTGAAA+GGG - chr5_1:16965771-16965790 None:intergenic 20.0%
!!! AATTTTACCTAATTCAAAAG+TGG - chr5_1:16966061-16966080 None:intergenic 20.0%
!!! GGATTTTTTTTAATGAATGT+TGG + chr5_1:16966920-16966939 Msa0720770:intron 20.0%
!!! AAAATTGATTTTGACATGTT+TGG + chr5_1:16967295-16967314 Msa0720770:intron 20.0%
!! TTAAGTTATTTATCCAAACA+GGG - chr5_1:16967514-16967533 None:intergenic 20.0%
!! ATTAAGTTATTTATCCAAAC+AGG - chr5_1:16967515-16967534 None:intergenic 20.0%
!!! AGGCTATAATTATTTTTTTG+AGG - chr5_1:16967612-16967631 None:intergenic 20.0%
!! TATATCAAATTGCATCAAAA+GGG - chr5_1:16967768-16967787 None:intergenic 20.0%
!! ATATATCAAATTGCATCAAA+AGG - chr5_1:16967769-16967788 None:intergenic 20.0%
!!! ATACATCTTTATTTTACTAC+GGG + chr5_1:16967879-16967898 Msa0720770:intron 20.0%
!!! ATTTATTTTCTACTTGTGTT+AGG + chr5_1:16968242-16968261 Msa0720770:intron 20.0%
!!! TTAAGTTGTTTATGCAAATA+TGG + chr5_1:16968609-16968628 Msa0720770:intron 20.0%
!! AAGGAAAAATTTACTTCATT+GGG + chr5_1:16968939-16968958 Msa0720770:CDS 20.0%
!! AAACAAATTAATGGAAAAAG+AGG - chr5_1:16969069-16969088 None:intergenic 20.0%
!! TATTTATGTCCACTTATTAA+AGG + chr5_1:16969999-16970018 Msa0720770:intron 20.0%
!!! TAATTTCATTTTCGCTTAAT+TGG - chr5_1:16970029-16970048 None:intergenic 20.0%
!! ATAAAGAAAATGTATTTCGT+TGG - chr5_1:16970496-16970515 None:intergenic 20.0%
!!! ACCTATATAATTTTGTTACT+TGG + chr5_1:16970962-16970981 Msa0720770:intron 20.0%
!! TCCAAGTAACAAAATTATAT+AGG - chr5_1:16970966-16970985 None:intergenic 20.0%
!! GTTTAATGTTATAAGAACAA+AGG - chr5_1:16971032-16971051 None:intergenic 20.0%
!! ATTATTCACATACAAATTAG+AGG - chr5_1:16971432-16971451 None:intergenic 20.0%
!!! TGTTTTCCTTTTTATATAAG+AGG + chr5_1:16971808-16971827 Msa0720770:three_prime_UTR 20.0%
! CAGAGATTATTATCATTGAA+AGG - chr5_1:16965772-16965791 None:intergenic 25.0%
! CAAAAAACAACAAATTGAGA+TGG - chr5_1:16965907-16965926 None:intergenic 25.0%
!!! TTTTTTGAGTTTTCTCAACA+TGG + chr5_1:16965920-16965939 Msa0720770:intron 25.0%
!!! TTTTTGAGTTTTCTCAACAT+GGG + chr5_1:16965921-16965940 Msa0720770:intron 25.0%
! ACTAGAGTTAGATAGATTAT+TGG + chr5_1:16965985-16966004 Msa0720770:intron 25.0%
!!! TTTAGTTCCACTTTTGAATT+AGG + chr5_1:16966051-16966070 Msa0720770:intron 25.0%
!! ATTTTTGCGTTGGATATTTT+GGG - chr5_1:16966337-16966356 None:intergenic 25.0%
!! AATTTTTGCGTTGGATATTT+TGG - chr5_1:16966338-16966357 None:intergenic 25.0%
!!! CTTTTGTTTCTGATTTGTAA+GGG + chr5_1:16966664-16966683 Msa0720770:intron 25.0%
!!! TCATTGTAGTGTTTTTTGAA+AGG + chr5_1:16966822-16966841 Msa0720770:intron 25.0%
! GATTTCTATGATATTGTTGT+TGG + chr5_1:16966858-16966877 Msa0720770:intron 25.0%
!!! TTTATTTGTTGTGTTGAATC+TGG + chr5_1:16967003-16967022 Msa0720770:intron 25.0%
!!! TTATTTGTTGTGTTGAATCT+GGG + chr5_1:16967004-16967023 Msa0720770:intron 25.0%
!! TTGAATCTGGGTATTATTTT+TGG + chr5_1:16967016-16967035 Msa0720770:intron 25.0%
! GGAAAAAAATTAGATGTTGT+TGG + chr5_1:16967116-16967135 Msa0720770:intron 25.0%
!! CTTCAAGTTTGAATCAATTA+TGG - chr5_1:16967346-16967365 None:intergenic 25.0%
! TGGATATATTCATGTAAAAG+TGG - chr5_1:16967415-16967434 None:intergenic 25.0%
! GTGAGTTATAATACATAAAG+TGG - chr5_1:16967446-16967465 None:intergenic 25.0%
! TTAATTATAAGTGCTATGCA+GGG + chr5_1:16967530-16967549 Msa0720770:intron 25.0%
!!! TAGAAAGCTTGGTTTTATAT+GGG - chr5_1:16967796-16967815 None:intergenic 25.0%
!!! ATAGAAAGCTTGGTTTTATA+TGG - chr5_1:16967797-16967816 None:intergenic 25.0%
! TTTGAAAGATATATTTGGGA+GGG - chr5_1:16967825-16967844 None:intergenic 25.0%
!!! TTTTGAAAGATATATTTGGG+AGG - chr5_1:16967826-16967845 None:intergenic 25.0%
! TTACAAATTACAAGTGCTTA+TGG + chr5_1:16968145-16968164 Msa0720770:intron 25.0%
!! TTAGAAACGTAAAAAGCATA+AGG - chr5_1:16968331-16968350 None:intergenic 25.0%
!! GCTTTTTACGTTTCTAATTA+AGG + chr5_1:16968334-16968353 Msa0720770:intron 25.0%
! TTTCTAATTAAGGACATGTT+TGG + chr5_1:16968344-16968363 Msa0720770:intron 25.0%
!! AATAAGTTGAAAACAGGTTA+TGG - chr5_1:16968443-16968462 None:intergenic 25.0%
!! TGTGAAAATAAGTTGAAAAC+AGG - chr5_1:16968449-16968468 None:intergenic 25.0%
! AGCAGATATTGAAATTGTAA+AGG + chr5_1:16968743-16968762 Msa0720770:CDS 25.0%
! GCAGATATTGAAATTGTAAA+GGG + chr5_1:16968744-16968763 Msa0720770:CDS 25.0%
!! TAAATTTTTCCTTCGTTGTT+GGG - chr5_1:16968932-16968951 None:intergenic 25.0%
! GAAGGAAAAATTTACTTCAT+TGG + chr5_1:16968938-16968957 Msa0720770:CDS 25.0%
! AGGAAAAATTTACTTCATTG+GGG + chr5_1:16968940-16968959 Msa0720770:CDS 25.0%
!! TTTTGTTACCAAATGAATGT+TGG + chr5_1:16969030-16969049 Msa0720770:intron 25.0%
!! TTTATCCTATTTGTTGAACA+GGG + chr5_1:16969542-16969561 Msa0720770:intron 25.0%
!! TCATTGATATTGTTGATAAG+CGG + chr5_1:16969742-16969761 Msa0720770:CDS 25.0%
! AATAAGCAAGCATTATATTC+TGG - chr5_1:16969969-16969988 None:intergenic 25.0%
!! ATTGGTTTACCTTTAATAAG+TGG - chr5_1:16970011-16970030 None:intergenic 25.0%
! TTATCTGTTGTAACTATCTT+AGG - chr5_1:16970139-16970158 None:intergenic 25.0%
!!! TATAGACTTTTAGCTATTGA+CGG - chr5_1:16970201-16970220 None:intergenic 25.0%
! TCAATCTGTTCAACATTTAT+GGG - chr5_1:16970893-16970912 None:intergenic 25.0%
! TTCAATCTGTTCAACATTTA+TGG - chr5_1:16970894-16970913 None:intergenic 25.0%
!!! TTATGGCCTATATTTTTTAG+AGG + chr5_1:16970924-16970943 Msa0720770:intron 25.0%
!! ATGACACCTCTAAAAAATAT+AGG - chr5_1:16970933-16970952 None:intergenic 25.0%
!!! TATATTTTTTAGAGGTGTCA+TGG + chr5_1:16970932-16970951 Msa0720770:intron 25.0%
!!! TCAGTAGCTTTATTTCTTTT+GGG - chr5_1:16971233-16971252 None:intergenic 25.0%
!!! TTCAGTAGCTTTATTTCTTT+TGG - chr5_1:16971234-16971253 None:intergenic 25.0%
! TACTATTGAGAAGGAATATA+TGG + chr5_1:16971594-16971613 Msa0720770:CDS 25.0%
! TAGTCTACAGATATTTGAAA+GGG - chr5_1:16971783-16971802 None:intergenic 25.0%
! ACAAGTCCTCTTATATAAAA+AGG - chr5_1:16971817-16971836 None:intergenic 25.0%
! AAAACTTAGTAATTGAAACC+TGG - chr5_1:16971849-16971868 None:intergenic 25.0%
!!! TCAATTACTAAGTTTTAAGC+AGG + chr5_1:16971853-16971872 Msa0720770:three_prime_UTR 25.0%
! TATACTTACTAATTACTCAC+TGG - chr5_1:16972068-16972087 None:intergenic 25.0%
! GTATATAAGTTTATGTGTGT+TGG - chr5_1:16972144-16972163 None:intergenic 25.0%
! TCTTCTATTTGTAGGTTATA+TGG + chr5_1:16972209-16972228 Msa0720770:three_prime_UTR 25.0%
ATTATCATTGAAAGGGAAGA+AGG - chr5_1:16965764-16965783 None:intergenic 30.0%
!!! TAAGTTTTGTTCTGTGGTTT+TGG - chr5_1:16965822-16965841 None:intergenic 30.0%
!!! GAGTTATAAGTTTTGTTCTG+TGG - chr5_1:16965828-16965847 None:intergenic 30.0%
! AGAAGCACATAAGAGAATAA+GGG - chr5_1:16965863-16965882 None:intergenic 30.0%
!! TGAAGGCGAAATTTAATTTG+GGG - chr5_1:16966296-16966315 None:intergenic 30.0%
! CTGAAGGCGAAATTTAATTT+GGG - chr5_1:16966297-16966316 None:intergenic 30.0%
TCTGAAGGCGAAATTTAATT+TGG - chr5_1:16966298-16966317 None:intergenic 30.0%
! TTTTTGCGTTGGATATTTTG+GGG - chr5_1:16966336-16966355 None:intergenic 30.0%
!!! GAGAGGTTTTTTTGGTTTAT+TGG - chr5_1:16966368-16966387 None:intergenic 30.0%
! TAGAGTTGTTGTTGGTTAAT+GGG - chr5_1:16966424-16966443 None:intergenic 30.0%
! TTAGAGTTGTTGTTGGTTAA+TGG - chr5_1:16966425-16966444 None:intergenic 30.0%
GGTTTAATTAGAGTTGTTGT+TGG - chr5_1:16966432-16966451 None:intergenic 30.0%
AAATCAGAAACAAAAGGACA+GGG - chr5_1:16966660-16966679 None:intergenic 30.0%
CCTTACAAATCAGAAACAAA+AGG - chr5_1:16966666-16966685 None:intergenic 30.0%
!!! CCTTTTGTTTCTGATTTGTA+AGG + chr5_1:16966663-16966682 Msa0720770:intron 30.0%
!!! CTGATTTGTAAGGGATTTTT+TGG + chr5_1:16966673-16966692 Msa0720770:intron 30.0%
! TGTGTGCAATTTTGTATATG+TGG + chr5_1:16966798-16966817 Msa0720770:intron 30.0%
! GTGTGCAATTTTGTATATGT+GGG + chr5_1:16966799-16966818 Msa0720770:intron 30.0%
! TATGAGTTGTTCATTTTCTC+TGG + chr5_1:16966899-16966918 Msa0720770:intron 30.0%
TTTGTTCCTGGTATATTGTA+TGG + chr5_1:16967062-16967081 Msa0720770:intron 30.0%
TAATTTACTAACACCCTGTT+TGG + chr5_1:16967498-16967517 Msa0720770:intron 30.0%
CTTAATTATAAGTGCTATGC+AGG + chr5_1:16967529-16967548 Msa0720770:intron 30.0%
! TATAGCAAGAACTGGATTTT+TGG + chr5_1:16967661-16967680 Msa0720770:intron 30.0%
! ATAGCAAGAACTGGATTTTT+GGG + chr5_1:16967662-16967681 Msa0720770:intron 30.0%
AGTAAAATATACCTACAGAC+AGG + chr5_1:16967693-16967712 Msa0720770:intron 30.0%
! GTCTTTAATGCCAATGTTTT+GGG - chr5_1:16967719-16967738 None:intergenic 30.0%
! AGTCTTTAATGCCAATGTTT+TGG - chr5_1:16967720-16967739 None:intergenic 30.0%
AAAACATTGGCATTAAAGAC+TGG + chr5_1:16967719-16967738 Msa0720770:intron 30.0%
AAACATTGGCATTAAAGACT+GGG + chr5_1:16967720-16967739 Msa0720770:intron 30.0%
!!! AGAAAGCTTGGTTTTATATG+GGG - chr5_1:16967795-16967814 None:intergenic 30.0%
AGATTGTTTAGAAGAACCTA+TGG - chr5_1:16968090-16968109 None:intergenic 30.0%
AAGGAACAAGGTAACAATAA+AGG - chr5_1:16968312-16968331 None:intergenic 30.0%
AGAGACTATAAACTAACTTG+TGG - chr5_1:16968635-16968654 None:intergenic 30.0%
! CAAGTTAGTTTATAGTCTCT+AGG + chr5_1:16968635-16968654 Msa0720770:intron 30.0%
GAATGAGAAAACCAAATCAA+AGG + chr5_1:16968812-16968831 Msa0720770:CDS 30.0%
AGACGAATGGAAGAAATATA+AGG + chr5_1:16968860-16968879 Msa0720770:CDS 30.0%
! GTAAATTTTTCCTTCGTTGT+TGG - chr5_1:16968933-16968952 None:intergenic 30.0%
! ATGCTTTTCCAACATTCATT+TGG - chr5_1:16969041-16969060 None:intergenic 30.0%
!! ATTGCAGATTGATGATGAAA+TGG + chr5_1:16969319-16969338 Msa0720770:intron 30.0%
! CTTTATCCTATTTGTTGAAC+AGG + chr5_1:16969541-16969560 Msa0720770:intron 30.0%
CGATAATACTCTGATGAATA+TGG + chr5_1:16969609-16969628 Msa0720770:CDS 30.0%
ATCTACAACAATGAAGAATG+AGG + chr5_1:16969786-16969805 Msa0720770:CDS 30.0%
TACGTTCAAGCTTAAAACAT+AGG - chr5_1:16969896-16969915 None:intergenic 30.0%
TGATTTATGCGTCAAAATGT+CGG + chr5_1:16969925-16969944 Msa0720770:intron 30.0%
TGTAACTATCTTAGGAAGTT+AGG - chr5_1:16970131-16970150 None:intergenic 30.0%
TGAATTCACATTAGAATGAG+AGG + chr5_1:16970400-16970419 Msa0720770:intron 30.0%
GAATTCACATTAGAATGAGA+GGG + chr5_1:16970401-16970420 Msa0720770:intron 30.0%
AATTCACATTAGAATGAGAG+GGG + chr5_1:16970402-16970421 Msa0720770:intron 30.0%
!!! TTTAGTTTTCCTCGTTTGTA+CGG - chr5_1:16970450-16970469 None:intergenic 30.0%
AAAATGTATTTCGTTGGTAC+AGG - chr5_1:16970490-16970509 None:intergenic 30.0%
TCAAACACTCACTATTGTTT+GGG - chr5_1:16970563-16970582 None:intergenic 30.0%
TAAAACTTCAGTGAACAAGT+AGG + chr5_1:16970586-16970605 Msa0720770:intron 30.0%
AAAACTTCAGTGAACAAGTA+GGG + chr5_1:16970587-16970606 Msa0720770:intron 30.0%
TAACTATTAAGTGAAGTGTG+TGG + chr5_1:16970632-16970651 Msa0720770:intron 30.0%
! CACAATTCAAGAAACCTTTT+AGG + chr5_1:16970856-16970875 Msa0720770:intron 30.0%
! AATTCAAGAAACCTTTTAGG+TGG + chr5_1:16970859-16970878 Msa0720770:intron 30.0%
ATATAGGCCATAAAAACTCA+GGG - chr5_1:16970917-16970936 None:intergenic 30.0%
AATATAGGCCATAAAAACTC+AGG - chr5_1:16970918-16970937 None:intergenic 30.0%
TGTTATAAGAACAAAGGAAG+AGG - chr5_1:16971026-16971045 None:intergenic 30.0%
GTTTGGCATAAAACAAGAAT+AGG - chr5_1:16971092-16971111 None:intergenic 30.0%
AATATTGCTCAATATTGTGC+AGG + chr5_1:16971149-16971168 Msa0720770:intron 30.0%
!!! CAGTAGCTTTATTTCTTTTG+GGG - chr5_1:16971232-16971251 None:intergenic 30.0%
! GTATAAAGCATTAGGATCTT+TGG - chr5_1:16971337-16971356 None:intergenic 30.0%
! TCTTACGTGTATAAAGCATT+AGG - chr5_1:16971345-16971364 None:intergenic 30.0%
ATAATTAAACAGTACGCCAA+AGG + chr5_1:16971447-16971466 Msa0720770:intron 30.0%
AGATGCATATAATCTGAACA+AGG + chr5_1:16971498-16971517 Msa0720770:CDS 30.0%
AACAACCTCTGAATAACTAT+AGG - chr5_1:16971562-16971581 None:intergenic 30.0%
!!! CAATCAGAAGTGTTTTAAGT+TGG + chr5_1:16971658-16971677 Msa0720770:exon 30.0%
ATGAAGAAATGAATGAACGT+AGG + chr5_1:16971741-16971760 Msa0720770:three_prime_UTR 30.0%
CTAGTCTACAGATATTTGAA+AGG - chr5_1:16971784-16971803 None:intergenic 30.0%
ATTGAACCAATGAAGATCTT+TGG + chr5_1:16971924-16971943 Msa0720770:three_prime_UTR 30.0%
AGTTTATGTGTGTTGGATTA+CGG - chr5_1:16972137-16972156 None:intergenic 30.0%
!!! GAGCTAATCACTGTTTTTTT+TGG - chr5_1:16972166-16972185 None:intergenic 30.0%
AAGGAACAAACAACCTTAAC+TGG + chr5_1:16965692-16965711 Msa0720770:five_prime_UTR 35.0%
!!! TTTTGTTCTGTGGTTTTGGA+AGG - chr5_1:16965818-16965837 None:intergenic 35.0%
GAAGCACATAAGAGAATAAG+GGG - chr5_1:16965862-16965881 None:intergenic 35.0%
! GAGAAGCACATAAGAGAATA+AGG - chr5_1:16965864-16965883 None:intergenic 35.0%
GATGGAAAACACTACTTACT+TGG - chr5_1:16965889-16965908 None:intergenic 35.0%
GAGAAAAGAAGCCATGAAAA+TGG - chr5_1:16966241-16966260 None:intergenic 35.0%
!! GAAGGCGAAATTTAATTTGG+GGG - chr5_1:16966295-16966314 None:intergenic 35.0%
TAAGGATGAAATGAGTCTGA+AGG - chr5_1:16966313-16966332 None:intergenic 35.0%
! GGATTTGAGAATTTTTGCGT+TGG - chr5_1:16966347-16966366 None:intergenic 35.0%
!!! AGAGTGTTGAGAGGTTTTTT+TGG - chr5_1:16966376-16966395 None:intergenic 35.0%
CTCTTCTCTAAACTAATGTC+AGG + chr5_1:16966394-16966413 Msa0720770:intron 35.0%
!!! TTCTGTTTTGGTGTTGTTAG+TGG + chr5_1:16966508-16966527 Msa0720770:intron 35.0%
!!! TTTTGGTGTTGTTAGTGGAT+TGG + chr5_1:16966513-16966532 Msa0720770:intron 35.0%
!!! GTTGTTAGTGGATTGGTTTT+AGG + chr5_1:16966520-16966539 Msa0720770:intron 35.0%
!!! TGCTGTTAACTCTGGTTTTT+CGG + chr5_1:16966632-16966651 Msa0720770:intron 35.0%
CAAATCAGAAACAAAAGGAC+AGG - chr5_1:16966661-16966680 None:intergenic 35.0%
ACTTCTCCATACAATATACC+AGG - chr5_1:16967071-16967090 None:intergenic 35.0%
TGGTATATTGTATGGAGAAG+TGG + chr5_1:16967070-16967089 Msa0720770:intron 35.0%
TATATTGTATGGAGAAGTGG+TGG + chr5_1:16967073-16967092 Msa0720770:intron 35.0%
!! TAGATGTTGTTGGTTCAGTA+TGG + chr5_1:16967126-16967145 Msa0720770:intron 35.0%
TTTGACATGTTTGGATGTTG+AGG + chr5_1:16967304-16967323 Msa0720770:intron 35.0%
AGACTAAAAATCAGTTGCAG+AGG - chr5_1:16967375-16967394 None:intergenic 35.0%
TACATAAAGTGGTCTGTGTT+TGG - chr5_1:16967435-16967454 None:intergenic 35.0%
! TAGCAAGAACTGGATTTTTG+GGG + chr5_1:16967663-16967682 Msa0720770:intron 35.0%
! GCTGAAGTCTGTTATTGTTT+TGG + chr5_1:16967742-16967761 Msa0720770:intron 35.0%
! GCTGATTTCATAAGCTATCT+TGG + chr5_1:16968011-16968030 Msa0720770:intron 35.0%
! ATGTCACAAGTTGTTTCCAT+AGG + chr5_1:16968071-16968090 Msa0720770:intron 35.0%
TAAAATAAGCCGATCGAAAC+AGG + chr5_1:16968179-16968198 Msa0720770:intron 35.0%
CTTACAACGTTGACAGTTTA+GGG - chr5_1:16968205-16968224 None:intergenic 35.0%
TCTTACAACGTTGACAGTTT+AGG - chr5_1:16968206-16968225 None:intergenic 35.0%
AGGAAAGAAACAACAAGACA+AGG + chr5_1:16968262-16968281 Msa0720770:intron 35.0%
GGAAAGAAACAACAAGACAA+GGG + chr5_1:16968263-16968282 Msa0720770:intron 35.0%
! CGTAAAAAGCATAAGGAACA+AGG - chr5_1:16968324-16968343 None:intergenic 35.0%
AGAAAACCAAATCAAAGGAC+TGG + chr5_1:16968817-16968836 Msa0720770:CDS 35.0%
ACTTGATATTCAGAGACGAA+TGG + chr5_1:16968847-16968866 Msa0720770:CDS 35.0%
AATTTACTTCATTGGGGAGA+AGG + chr5_1:16968946-16968965 Msa0720770:CDS 35.0%
ATTTACTTCATTGGGGAGAA+GGG + chr5_1:16968947-16968966 Msa0720770:CDS 35.0%
TTCATCTGTTCTGTATGATC+AGG + chr5_1:16969289-16969308 Msa0720770:intron 35.0%
!! CAGATTGATGATGAAATGGA+AGG + chr5_1:16969323-16969342 Msa0720770:intron 35.0%
TGCAACTATGGCATTAATGT+CGG - chr5_1:16969387-16969406 None:intergenic 35.0%
TTTCTTACAAGCTACATCGA+TGG - chr5_1:16969686-16969705 None:intergenic 35.0%
AGTGGACATAAATACATCAG+AGG - chr5_1:16969993-16970012 None:intergenic 35.0%
! ATTTAGAGTTGTGAGCAACT+AGG - chr5_1:16970260-16970279 None:intergenic 35.0%
ATTATCACACATGACACTCA+AGG + chr5_1:16970298-16970317 Msa0720770:intron 35.0%
CTCAAACACTCACTATTGTT+TGG - chr5_1:16970564-16970583 None:intergenic 35.0%
CTCATTATAGTCAGAAAGTG+TGG + chr5_1:16970738-16970757 Msa0720770:intron 35.0%
CTGATCATATTTGCATCTCT+AGG - chr5_1:16970827-16970846 None:intergenic 35.0%
! GATTGAACCCTGAGTTTTTA+TGG + chr5_1:16970907-16970926 Msa0720770:intron 35.0%
CCTTGTTAGGGAAATTACTT+TGG - chr5_1:16970996-16971015 None:intergenic 35.0%
CCAAAGTAATTTCCCTAACA+AGG + chr5_1:16970993-16971012 Msa0720770:intron 35.0%
!! TCTTTGTGGTCTTGTACAAT+TGG - chr5_1:16971191-16971210 None:intergenic 35.0%
ATCCATTTATGCAGTTCCTT+TGG - chr5_1:16971466-16971485 None:intergenic 35.0%
AATCAGATTTGAGAGAAGCT+AGG + chr5_1:16971524-16971543 Msa0720770:CDS 35.0%
CTGATCCTATAGTTATTCAG+AGG + chr5_1:16971554-16971573 Msa0720770:CDS 35.0%
AGGACTTGTATTATTTCACC+AGG + chr5_1:16971828-16971847 Msa0720770:three_prime_UTR 35.0%
GTTTATGTGTGTTGGATTAC+GGG - chr5_1:16972136-16972155 None:intergenic 35.0%
TCCAGAGTTCTTCTATTTGT+AGG + chr5_1:16972201-16972220 Msa0720770:three_prime_UTR 35.0%
ACCTACAAATAGAAGAACTC+TGG - chr5_1:16972205-16972224 None:intergenic 35.0%
!! CACTTTGTTGTTGAGTCTGA+AGG + chr5_1:16965673-16965692 Msa0720770:five_prime_UTR 40.0%
AGCTCTTCATGTTCCAGTTA+AGG - chr5_1:16965708-16965727 None:intergenic 40.0%
ATCATTGAAAGGGAAGAAGG+CGG - chr5_1:16965761-16965780 None:intergenic 40.0%
!! ACTAGCCTCTTCCATTTTCA+TGG + chr5_1:16966227-16966246 Msa0720770:intron 40.0%
AGAAGCCATGAAAATGGAAG+AGG - chr5_1:16966235-16966254 None:intergenic 40.0%
!! TTAGAGAAGAGAGTGTTGAG+AGG - chr5_1:16966385-16966404 None:intergenic 40.0%
!! ATTAAACCCCGCTTTTGTCT+TGG + chr5_1:16966444-16966463 Msa0720770:intron 40.0%
!!! TAGTGGATTGGTTTTAGGTG+TGG + chr5_1:16966525-16966544 Msa0720770:intron 40.0%
GAAGGAAGAAGATGAAGCTT+GGG + chr5_1:16967095-16967114 Msa0720770:intron 40.0%
TGGTTCAGTATGGTGTACAA+TGG + chr5_1:16967136-16967155 Msa0720770:intron 40.0%
TGTTTCAACCATTCGATTGC+AGG - chr5_1:16967163-16967182 None:intergenic 40.0%
! GAGGGTGTAAATAGAAAGCT+TGG - chr5_1:16967807-16967826 None:intergenic 40.0%
TAAGTACTTCCGAGACTGTT+TGG + chr5_1:16968400-16968419 Msa0720770:intron 40.0%
AAGTACTTCCGAGACTGTTT+GGG + chr5_1:16968401-16968420 Msa0720770:intron 40.0%
AAACCAAATCAAAGGACTGG+AGG + chr5_1:16968820-16968839 Msa0720770:CDS 40.0%
TTTCCTCCAGTCCTTTGATT+TGG - chr5_1:16968826-16968845 None:intergenic 40.0%
CATATATCTAGGCACTTGCT+TGG + chr5_1:16969254-16969273 Msa0720770:intron 40.0%
AGGACACTATGAACTTCTCA+AGG + chr5_1:16969343-16969362 Msa0720770:CDS 40.0%
ACTATGGCATTAATGTCGGT+CGG - chr5_1:16969383-16969402 None:intergenic 40.0%
TTAATGCCATAGTTGCACGA+AGG + chr5_1:16969390-16969409 Msa0720770:CDS 40.0%
AAGTGTCTGCAATAAGAGAG+AGG - chr5_1:16969448-16969467 None:intergenic 40.0%
AATTACCATCACGATCATCC+AGG - chr5_1:16969478-16969497 None:intergenic 40.0%
AGTATTATCGTATGCACCGA+CGG - chr5_1:16969599-16969618 None:intergenic 40.0%
CATCGATGGAAGGAGAATTA+AGG - chr5_1:16969672-16969691 None:intergenic 40.0%
TTACAAGCTACATCGATGGA+AGG - chr5_1:16969682-16969701 None:intergenic 40.0%
CAAAAGCCTTGCAAAAGCAA+AGG + chr5_1:16969708-16969727 Msa0720770:CDS 40.0%
!! CAAGTTCCTTTGCTTTTGCA+AGG - chr5_1:16969717-16969736 None:intergenic 40.0%
! TATTGTTGATAAGCGGTGCT+TGG + chr5_1:16969749-16969768 Msa0720770:CDS 40.0%
! ATTGTTGATAAGCGGTGCTT+GGG + chr5_1:16969750-16969769 Msa0720770:CDS 40.0%
TATGCGTCAAAATGTCGGAA+TGG + chr5_1:16969930-16969949 Msa0720770:intron 40.0%
ATGACACTCAAGGCTGAAAA+GGG + chr5_1:16970308-16970327 Msa0720770:intron 40.0%
TTGCGGTGTATTCACATTCA+CGG - chr5_1:16970538-16970557 None:intergenic 40.0%
TCACTATTGTTTGGGTCTTG+CGG - chr5_1:16970555-16970574 None:intergenic 40.0%
! TGTGTGGAAGTTGATCATCA+AGG + chr5_1:16970648-16970667 Msa0720770:intron 40.0%
!! AGAGGCATTTCACCTTGTTA+GGG - chr5_1:16971008-16971027 None:intergenic 40.0%
!! AAGAGGCATTTCACCTTGTT+AGG - chr5_1:16971009-16971028 None:intergenic 40.0%
TATGCAGTGAGTCTACAGTT+TGG - chr5_1:16971109-16971128 None:intergenic 40.0%
TCAGAGGTTGTTTATCCTCA+AGG + chr5_1:16971570-16971589 Msa0720770:CDS 40.0%
CCTTCTCAATAGTATCCTTG+AGG - chr5_1:16971588-16971607 None:intergenic 40.0%
CCTCAAGGATACTATTGAGA+AGG + chr5_1:16971585-16971604 Msa0720770:CDS 40.0%
TCATCTTCAGTCTCAGACTT+TGG - chr5_1:16971634-16971653 None:intergenic 40.0%
ATCAAAAACGGGATCACGAA+CGG - chr5_1:16971695-16971714 None:intergenic 40.0%
TGAACGTAGGAAGAATGAAG+TGG + chr5_1:16971754-16971773 Msa0720770:three_prime_UTR 40.0%
GAACCAATGAAGATCTTTGG+TGG + chr5_1:16971927-16971946 Msa0720770:three_prime_UTR 40.0%
CTACCACCAAAGATCTTCAT+TGG - chr5_1:16971933-16971952 None:intergenic 40.0%
! CAATGAAGATCTTTGGTGGT+AGG + chr5_1:16971931-16971950 Msa0720770:three_prime_UTR 40.0%
TTTGTCAGTGATGAGCTTTG+TGG + chr5_1:16972088-16972107 Msa0720770:three_prime_UTR 40.0%
!! AACAGTGATTAGCTCTGACT+TGG + chr5_1:16972171-16972190 Msa0720770:three_prime_UTR 40.0%
GAAGAAGGCGGTGATGTTTA+AGG - chr5_1:16965749-16965768 None:intergenic 45.0%
GAAGGAAGGAGTGAGAAAGT+TGG - chr5_1:16965800-16965819 None:intergenic 45.0%
!!! GTTCTGTGGTTTTGGAAGGA+AGG - chr5_1:16965814-16965833 None:intergenic 45.0%
GGCTAGTGATATTGTGCTGA+TGG - chr5_1:16966214-16966233 None:intergenic 45.0%
TGAAACAGTGTCGTGTGAGA+AGG - chr5_1:16966269-16966288 None:intergenic 45.0%
!!! GCGTTGGATATTTTGGGGTA+AGG - chr5_1:16966331-16966350 None:intergenic 45.0%
ATCACCCACCAAGACAAAAG+CGG - chr5_1:16966455-16966474 None:intergenic 45.0%
!! TTTTGTCTTGGTGGGTGATC+CGG + chr5_1:16966456-16966475 Msa0720770:intron 45.0%
CACAAAAAAAGCCACTCAGC+CGG - chr5_1:16966478-16966497 None:intergenic 45.0%
!!! GCAGATTTTGGTGCTTTAGC+TGG + chr5_1:16966600-16966619 Msa0720770:intron 45.0%
! GCTGCTATTGCTGTTAACTC+TGG + chr5_1:16966624-16966643 Msa0720770:intron 45.0%
! TTGTATGGAGAAGTGGTGGA+AGG + chr5_1:16967077-16967096 Msa0720770:intron 45.0%
GGAAGGAAGAAGATGAAGCT+TGG + chr5_1:16967094-16967113 Msa0720770:intron 45.0%
ACAATGGACCTGCAATCGAA+TGG + chr5_1:16967152-16967171 Msa0720770:intron 45.0%
TTATAAGTGCTATGCAGGGC+TGG + chr5_1:16967534-16967553 Msa0720770:intron 45.0%
!!! TTTTTTGAGGCCCATACCCT+GGG - chr5_1:16967599-16967618 None:intergenic 45.0%
!!! TTTTTTTGAGGCCCATACCC+TGG - chr5_1:16967600-16967619 None:intergenic 45.0%
ATACACCCGCACGGTTTATT+GGG - chr5_1:16967642-16967661 None:intergenic 45.0%
TATACACCCGCACGGTTTAT+TGG - chr5_1:16967643-16967662 None:intergenic 45.0%
! TCTTGCTATATACACCCGCA+CGG - chr5_1:16967651-16967670 None:intergenic 45.0%
CGGGTGTATATAGCAAGAAC+TGG + chr5_1:16967653-16967672 Msa0720770:intron 45.0%
!! AATGTTTTGGGCCTGTCTGT+AGG - chr5_1:16967707-16967726 None:intergenic 45.0%
TACAGACAGGCCCAAAACAT+TGG + chr5_1:16967706-16967725 Msa0720770:intron 45.0%
!! TCGGTGCTGGAAGTAAAATG+AGG - chr5_1:16967905-16967924 None:intergenic 45.0%
TTCCTACGAATATGGAGGCT+CGG - chr5_1:16967924-16967943 None:intergenic 45.0%
AGCCTCCATATTCGTAGGAA+CGG + chr5_1:16967924-16967943 Msa0720770:intron 45.0%
! GTAACTTGTGCATAGCACCA+GGG - chr5_1:16967950-16967969 None:intergenic 45.0%
! AGTAACTTGTGCATAGCACC+AGG - chr5_1:16967951-16967970 None:intergenic 45.0%
! AGTTTAGGGCCTGTTTCGAT+CGG - chr5_1:16968191-16968210 None:intergenic 45.0%
! TACTAGCTTGTGGGCCTAAA+AGG - chr5_1:16968695-16968714 None:intergenic 45.0%
!! TGGAAGCACTACTAGCTTGT+GGG - chr5_1:16968704-16968723 None:intergenic 45.0%
!! ATGGAAGCACTACTAGCTTG+TGG - chr5_1:16968705-16968724 None:intergenic 45.0%
ACAAGCTAGTAGTGCTTCCA+TGG + chr5_1:16968704-16968723 Msa0720770:CDS 45.0%
TTGCTCTTCAACTTGAGCCA+TGG - chr5_1:16968724-16968743 None:intergenic 45.0%
ATGCCAAAGAAGAGCTGACA+TGG + chr5_1:16968899-16968918 Msa0720770:CDS 45.0%
TCTCCATGTCAGCTCTTCTT+TGG - chr5_1:16968905-16968924 None:intergenic 45.0%
CTGCAATAAGAGAGAGGTAG+CGG - chr5_1:16969442-16969461 None:intergenic 45.0%
GCGATCCCTGTTCAACAAAT+AGG - chr5_1:16969550-16969569 None:intergenic 45.0%
! TAAGCATTTAGCTCCTAGCC+TGG - chr5_1:16969572-16969591 None:intergenic 45.0%
GCTAAATGCTTATCTGCCGT+CGG + chr5_1:16969580-16969599 Msa0720770:CDS 45.0%
!! TGTCGGAATGGTCTTGTTGA+TGG + chr5_1:16969942-16969961 Msa0720770:intron 45.0%
CATGACACTCAAGGCTGAAA+AGG + chr5_1:16970307-16970326 Msa0720770:intron 45.0%
ACTCAAGGCTGAAAAGGGAA+GGG + chr5_1:16970313-16970332 Msa0720770:intron 45.0%
GATCACCAATGCAAAAAGCC+AGG + chr5_1:16970339-16970358 Msa0720770:intron 45.0%
!! ATGTGCCTGGCTTTTTGCAT+TGG - chr5_1:16970347-16970366 None:intergenic 45.0%
TGTATGAGACCGTACAAACG+AGG + chr5_1:16970438-16970457 Msa0720770:intron 45.0%
TGCGGTGTATTCACATTCAC+GGG - chr5_1:16970537-16970556 None:intergenic 45.0%
GGGTTACAGTACCACCTAAA+AGG - chr5_1:16970873-16970892 None:intergenic 45.0%
!!! CTTTTGGGGCAATAGTCCTT+AGG - chr5_1:16971218-16971237 None:intergenic 45.0%
TGGCTTCATGTTCATCACCA+GGG - chr5_1:16971317-16971336 None:intergenic 45.0%
TTGGCTTCATGTTCATCACC+AGG - chr5_1:16971318-16971337 None:intergenic 45.0%
CGCCAAAGGAACTGCATAAA+TGG + chr5_1:16971461-16971480 Msa0720770:CDS 45.0%
TCAAAAACGGGATCACGAAC+GGG - chr5_1:16971694-16971713 None:intergenic 45.0%
CGCTTCTCTCGATCAAAAAC+GGG - chr5_1:16971706-16971725 None:intergenic 45.0%
GCGCTTCTCTCGATCAAAAA+CGG - chr5_1:16971707-16971726 None:intergenic 45.0%
AGTGATTTACTCTACGCCAG+CGG + chr5_1:16971969-16971988 Msa0720770:three_prime_UTR 45.0%
! AGTTGGCTCATGCCTCATAA+TGG + chr5_1:16972005-16972024 Msa0720770:three_prime_UTR 45.0%
TTTGTGGCCTATCATGACCT+TGG + chr5_1:16972104-16972123 Msa0720770:three_prime_UTR 45.0%
GAGTTCACCAAGGTCATGAT+AGG - chr5_1:16972114-16972133 None:intergenic 45.0%
!! AAAATTATAAAACAAATTAA+TGG - chr5_1:16969078-16969097 None:intergenic 5.0%
GGAAGGAGTGAGAAAGTTGG+TGG - chr5_1:16965797-16965816 None:intergenic 50.0%
!! AAACCCCGCTTTTGTCTTGG+TGG + chr5_1:16966447-16966466 Msa0720770:intron 50.0%
!! AACCCCGCTTTTGTCTTGGT+GGG + chr5_1:16966448-16966467 Msa0720770:intron 50.0%
TCACCCACCAAGACAAAAGC+GGG - chr5_1:16966454-16966473 None:intergenic 50.0%
!!! GGCTTTTTTTGTGCTGCTGC+TGG + chr5_1:16966485-16966504 Msa0720770:intron 50.0%
!!! TGCTGCTGCTGGTTCTGTTT+TGG + chr5_1:16966496-16966515 Msa0720770:intron 50.0%
TGGTGTGCTTCTGCTGTTGT+GGG + chr5_1:16966545-16966564 Msa0720770:intron 50.0%
TCTGCTGTTGTGGGTCAGTT+TGG + chr5_1:16966554-16966573 Msa0720770:intron 50.0%
!! TTGTGGGTCAGTTTGGTGTG+TGG + chr5_1:16966561-16966580 Msa0720770:intron 50.0%
!! AGGTTGGGTGCTGCAGATTT+TGG + chr5_1:16966588-16966607 Msa0720770:intron 50.0%
!!! TTTTTGAGGCCCATACCCTG+GGG - chr5_1:16967598-16967617 None:intergenic 50.0%
!! ACGGTTTATTGGGGGGTACT+AGG - chr5_1:16967632-16967651 None:intergenic 50.0%
TACACCCGCACGGTTTATTG+GGG - chr5_1:16967641-16967660 None:intergenic 50.0%
TACGCTCTCCCAAACAGTCT+CGG - chr5_1:16968412-16968431 None:intergenic 50.0%
GGAGAATGACCCAACAACGA+AGG + chr5_1:16968920-16968939 Msa0720770:CDS 50.0%
ATTGGGGAGAAGGGTGAAGA+AGG + chr5_1:16968956-16968975 Msa0720770:CDS 50.0%
TTTGCGCCTTCGTGCAACTA+TGG - chr5_1:16969399-16969418 None:intergenic 50.0%
! CGAAGGCGCAAAGATTTCAC+AGG + chr5_1:16969407-16969426 Msa0720770:CDS 50.0%
TTTGTTGAACAGGGATCGCC+AGG + chr5_1:16969551-16969570 Msa0720770:intron 50.0%
CACTCAAGGCTGAAAAGGGA+AGG + chr5_1:16970312-16970331 Msa0720770:intron 50.0%
CAAAAAGCCAGGCACATGAG+TGG + chr5_1:16970350-16970369 Msa0720770:intron 50.0%
ATACGCCACTCTGCCAAGAA+GGG - chr5_1:16970377-16970396 None:intergenic 50.0%
GCGGTGTATTCACATTCACG+GGG - chr5_1:16970536-16970555 None:intergenic 50.0%
AGACCACAAAGAGCAGCCTA+AGG + chr5_1:16971199-16971218 Msa0720770:CDS 50.0%
AGTCCTTAGGCTGCTCTTTG+TGG - chr5_1:16971205-16971224 None:intergenic 50.0%
GCTAAACATCATAGACCCCG+AGG + chr5_1:16971260-16971279 Msa0720770:CDS 50.0%
GGCTTCATGTTCATCACCAG+GGG - chr5_1:16971316-16971335 None:intergenic 50.0%
!! TTTTGATCGAGAGAAGCGCG+AGG + chr5_1:16971708-16971727 Msa0720770:three_prime_UTR 50.0%
ACTCCTTAACCAACTTCCGC+TGG - chr5_1:16971988-16972007 None:intergenic 50.0%
! GCGGAAGTTGGTTAAGGAGT+TGG + chr5_1:16971988-16972007 Msa0720770:three_prime_UTR 50.0%
TGGATTACGGGAGTTCACCA+AGG - chr5_1:16972124-16972143 None:intergenic 50.0%
CACCCACCAAGACAAAAGCG+GGG - chr5_1:16966453-16966472 None:intergenic 55.0%
GTGGTGTGCTTCTGCTGTTG+TGG + chr5_1:16966544-16966563 Msa0720770:intron 55.0%
!! TGGGTCAGTTTGGTGTGTGG+TGG + chr5_1:16966564-16966583 Msa0720770:intron 55.0%
!! TCAGTTTGGTGTGTGGTGGC+AGG + chr5_1:16966568-16966587 Msa0720770:intron 55.0%
! TTTGGTGTGTGGTGGCAGGT+TGG + chr5_1:16966572-16966591 Msa0720770:intron 55.0%
TTGGTGTGTGGTGGCAGGTT+GGG + chr5_1:16966573-16966592 Msa0720770:intron 55.0%
GTACCCCCCAATAAACCGTG+CGG + chr5_1:16967633-16967652 Msa0720770:intron 55.0%
TACCCCCCAATAAACCGTGC+GGG + chr5_1:16967634-16967653 Msa0720770:intron 55.0%
ACACCCGCACGGTTTATTGG+GGG - chr5_1:16967640-16967659 None:intergenic 55.0%
CACCGAGCCTCCATATTCGT+AGG + chr5_1:16967919-16967938 Msa0720770:intron 55.0%
GGCCGTTCCTACGAATATGG+AGG - chr5_1:16967929-16967948 None:intergenic 55.0%
CAGGGCCGTTCCTACGAATA+TGG - chr5_1:16967932-16967951 None:intergenic 55.0%
CATATTCGTAGGAACGGCCC+TGG + chr5_1:16967930-16967949 Msa0720770:intron 55.0%
TGCAGACACTTACGACAGCC+TGG + chr5_1:16969457-16969476 Msa0720770:CDS 55.0%
GACAGCCTGGATGATCGTGA+TGG + chr5_1:16969470-16969489 Msa0720770:CDS 55.0%
GGAGACGTTAGATGCTGCAC+AGG + chr5_1:16969630-16969649 Msa0720770:CDS 55.0%
TACGCCACTCTGCCAAGAAG+GGG - chr5_1:16970376-16970395 None:intergenic 55.0%
CATACGCCACTCTGCCAAGA+AGG - chr5_1:16970378-16970397 None:intergenic 55.0%
AAGGCAGAGAATCGCTCCTC+GGG - chr5_1:16971279-16971298 None:intergenic 55.0%
CAAGGCAGAGAATCGCTCCT+CGG - chr5_1:16971280-16971299 None:intergenic 55.0%
AGGGGAGAAAGCTGTTGCCA+AGG - chr5_1:16971298-16971317 None:intergenic 55.0%
TTGGCAACAGCTTTCTCCCC+TGG + chr5_1:16971297-16971316 Msa0720770:CDS 55.0%
TACTCTACGCCAGCGGAAGT+TGG + chr5_1:16971976-16971995 Msa0720770:three_prime_UTR 55.0%
! ACGCCAGCGGAAGTTGGTTA+AGG + chr5_1:16971982-16972001 Msa0720770:three_prime_UTR 55.0%
GCTCATGCCTCATAATGGCG+CGG + chr5_1:16972010-16972029 Msa0720770:three_prime_UTR 55.0%
GTTGAGTCCGCGCCATTATG+AGG - chr5_1:16972020-16972039 None:intergenic 55.0%
AACTCCCACTGCTGGCATGA+GGG + chr5_1:16972037-16972056 Msa0720770:three_prime_UTR 55.0%
! TATAGCACCGAGCCTCCCCA+GGG + chr5_1:16967580-16967599 Msa0720770:intron 60.0%
CACCCGCACGGTTTATTGGG+GGG - chr5_1:16967639-16967658 None:intergenic 60.0%
!! CGAATATGGAGGCTCGGTGC+TGG - chr5_1:16967918-16967937 None:intergenic 60.0%
TGAACAGGGATCGCCAGGCT+AGG + chr5_1:16969556-16969575 Msa0720770:intron 60.0%
GCACATGAGTGGCCCCTTCT+TGG + chr5_1:16970361-16970380 Msa0720770:intron 60.0%
AGGCAGAGAATCGCTCCTCG+GGG - chr5_1:16971278-16971297 None:intergenic 60.0%
CGAGGAGCGATTCTCTGCCT+TGG + chr5_1:16971278-16971297 Msa0720770:CDS 60.0%
! ATCGAGAGAAGCGCGAGGCA+GGG + chr5_1:16971713-16971732 Msa0720770:three_prime_UTR 60.0%
CAACTCCCACTGCTGGCATG+AGG + chr5_1:16972036-16972055 Msa0720770:three_prime_UTR 60.0%
! TGGTGGGTGATCCGGCTGAG+TGG + chr5_1:16966464-16966483 Msa0720770:intron 65.0%
TGCTATGCAGGGCTGGACCC+TGG + chr5_1:16967541-16967560 Msa0720770:intron 65.0%
GCTATGCAGGGCTGGACCCT+GGG + chr5_1:16967542-16967561 Msa0720770:intron 65.0%
CTATGCAGGGCTGGACCCTG+GGG + chr5_1:16967543-16967562 Msa0720770:intron 65.0%
TATGCAGGGCTGGACCCTGG+GGG + chr5_1:16967544-16967563 Msa0720770:intron 65.0%
! CTATAGCACCGAGCCTCCCC+AGG + chr5_1:16967579-16967598 Msa0720770:intron 65.0%
ACCGAGCCTCCCCAGGGTAT+GGG + chr5_1:16967586-16967605 Msa0720770:intron 65.0%
TTGAGGCCCATACCCTGGGG+AGG - chr5_1:16967595-16967614 None:intergenic 65.0%
GAAGGGGCCACTCATGTGCC+TGG - chr5_1:16970360-16970379 None:intergenic 65.0%
GTGGCCCCTTCTTGGCAGAG+TGG + chr5_1:16970369-16970388 Msa0720770:intron 65.0%
! GATCGAGAGAAGCGCGAGGC+AGG + chr5_1:16971712-16971731 Msa0720770:three_prime_UTR 65.0%
GCGGACTCAACTCCCACTGC+TGG + chr5_1:16972029-16972048 Msa0720770:three_prime_UTR 65.0%
GCAGCCCTCATGCCAGCAGT+GGG - chr5_1:16972044-16972063 None:intergenic 65.0%
TGCAGCCCTCATGCCAGCAG+TGG - chr5_1:16972045-16972064 None:intergenic 65.0%
ATGCAGGGCTGGACCCTGGG+GGG + chr5_1:16967545-16967564 Msa0720770:intron 70.0%
AGCGCTGCTTGCACCCCCCA+GGG - chr5_1:16967561-16967580 None:intergenic 70.0%
TAGCGCTGCTTGCACCCCCC+AGG - chr5_1:16967562-16967581 None:intergenic 70.0%
CACCGAGCCTCCCCAGGGTA+TGG + chr5_1:16967585-16967604 Msa0720770:intron 70.0%
GCCCATACCCTGGGGAGGCT+CGG - chr5_1:16967590-16967609 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16965659 16972248 16965659 ID=Msa0720770;Name=Msa0720770
chr5_1 mRNA 16965659 16972248 16965659 ID=Msa0720770-mRNA-1;Parent=Msa0720770;Name=Msa0720770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=59|1|1|1|0.8|0.66|6|573|421
chr5_1 exon 16965659 16965889 16965659 ID=Msa0720770-mRNA-1:exon:6432;Parent=Msa0720770-mRNA-1
chr5_1 exon 16968700 16968977 16968700 ID=Msa0720770-mRNA-1:exon:6433;Parent=Msa0720770-mRNA-1
chr5_1 exon 16969326 16969491 16969326 ID=Msa0720770-mRNA-1:exon:6434;Parent=Msa0720770-mRNA-1
chr5_1 exon 16969563 16969807 16969563 ID=Msa0720770-mRNA-1:exon:6435;Parent=Msa0720770-mRNA-1
chr5_1 exon 16971171 16971358 16971171 ID=Msa0720770-mRNA-1:exon:6436;Parent=Msa0720770-mRNA-1
chr5_1 exon 16971459 16972248 16971459 ID=Msa0720770-mRNA-1:exon:6437;Parent=Msa0720770-mRNA-1
chr5_1 five_prime_UTR 16965659 16965717 16965659 ID=Msa0720770-mRNA-1:five_prime_utr;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16965718 16965889 16965718 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16968700 16968977 16968700 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16969326 16969491 16969326 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16969563 16969807 16969563 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16971171 16971358 16971171 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 CDS 16971459 16971675 16971459 ID=Msa0720770-mRNA-1:cds;Parent=Msa0720770-mRNA-1
chr5_1 three_prime_UTR 16971676 16972248 16971676 ID=Msa0720770-mRNA-1:three_prime_utr;Parent=Msa0720770-mRNA-1
Gene Sequence

>Msa0720770

ATGAAGAGCTTCAAAACATGCACTTCAACCTTAAACATCACCGCCTTCTTCCCTTTCAATGATAATAATCTCTGCACCACCAACTTTCTCACTCCTTCCTTCCAAAACCACAGAACAAAACTTATAACTCAGCATTTCAAACCCCTTATTCTCTTATGTGCTTCTCTTCCAAGCCCACAAGCTAGTAGTGCTTCCATGGCTCAAGTTGAAGAGCAAGCAGATATTGAAATTGTAAAGGGTTATACTATGACTCAATTTTGTGACAAAATGATAGATTTATTTCTGAATGAGAAAACCAAATCAAAGGACTGGAGGAAATACTTGATATTCAGAGACGAATGGAAGAAATATAAGGATAGCTTCTTCATTAGATGCCAAAGAAGAGCTGACATGGAGAATGACCCAACAACGAAGGAAAAATTTACTTCATTGGGGAGAAGGGTGAAGAAGATTGATGATGAAATGGAAGGACACTATGAACTTCTCAAGGAGATACAAGATTTTCCGACCGACATTAATGCCATAGTTGCACGAAGGCGCAAAGATTTCACAGGAGAATTTTTCCGCTACCTCTCTCTTATTGCAGACACTTACGACAGCCTGGATGATCGTGATGGGATCGCCAGGCTAGGAGCTAAATGCTTATCTGCCGTCGGTGCATACGATAATACTCTGATGAATATGGAGACGTTAGATGCTGCACAGGCCAAATTTGATGATATCCTTAATTCTCCTTCCATCGATGTAGCTTGTAAGAAAATCAAAAGCCTTGCAAAAGCAAAGGAACTTGATTCTTCATTGATATTGTTGATAAGCGGTGCTTGGGCTAAAGCAAAAGAATCTACAACAATGAAGAATGAGGTGAAAGAGATAATGTACCAATTGTACAAGACCACAAAGAGCAGCCTAAGGACTATTGCCCCAAAAGAAATAAAGCTACTGAAGCATTTGCTAAACATCATAGACCCCGAGGAGCGATTCTCTGCCTTGGCAACAGCTTTCTCCCCTGGTGATGAACATGAAGCCAAAGATCCTAATGCTTTATACACTACGCCAAAGGAACTGCATAAATGGATTCAGATCATGCTAGATGCATATAATCTGAACAAGGAAGAATCAGATTTGAGAGAAGCTAGGCAAATGACTGATCCTATAGTTATTCAGAGGTTGTTTATCCTCAAGGATACTATTGAGAAGGAATATATGGAAAACAACACTGTTCCAAAGTCTGAGACTGAAGATGACTCTCAATCAGAAGTGTTTTAA
Protein sequence

>Msa0720770

MKSFKTCTSTLNITAFFPFNDNNLCTTNFLTPSFQNHRTKLITQHFKPLILLCASLPSPQASSASMAQVEEQADIEIVKGYTMTQFCDKMIDLFLNEKTKSKDWRKYLIFRDEWKKYKDSFFIRCQRRADMENDPTTKEKFTSLGRRVKKIDDEMEGHYELLKEIQDFPTDINAIVARRRKDFTGEFFRYLSLIADTYDSLDDRDGIARLGAKCLSAVGAYDNTLMNMETLDAAQAKFDDILNSPSIDVACKKIKSLAKAKELDSSLILLISGAWAKAKESTTMKNEVKEIMYQLYKTTKSSLRTIAPKEIKLLKHLLNIIDPEERFSALATAFSPGDEHEAKDPNALYTTPKELHKWIQIMLDAYNLNKEESDLREARQMTDPIVIQRLFILKDTIEKEYMENNTVPKSETEDDSQSEVF*