Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803860 | XP_003612948.1 | 97.867 | 422 | 9 | 0 | 1 | 422 | 1 | 422 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803860 | sp|Q84WN0|Y4920_ARATH | 69.832 | 358 | 103 | 1 | 63 | 415 | 62 | 419 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803860 | A9YWR5 | 97.867 | 422 | 9 | 0 | 1 | 422 | 1 | 422 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050720 | Msa0803860 | 0.803914 | 2.776924e-49 | -8.615850e-47 |
| Msa0050770 | Msa0803860 | 0.822392 | 2.428424e-53 | -8.615850e-47 |
| Msa0720770 | Msa0803860 | 0.883878 | 3.089500e-71 | -8.615850e-47 |
| Msa0750380 | Msa0803860 | 0.819415 | 1.175329e-52 | -8.615850e-47 |
| Msa0761400 | Msa0803860 | 0.883342 | 4.868202e-71 | -8.615850e-47 |
| Msa0780140 | Msa0803860 | 0.802128 | 6.498137e-49 | -8.615850e-47 |
| Msa0794460 | Msa0803860 | 0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0803860 | Msa0824140 | 0.809718 | 1.647063e-50 | -8.615850e-47 |
| Msa0803860 | Msa0830720 | 0.814116 | 1.814469e-51 | -8.615850e-47 |
| Msa0803860 | Msa0863250 | 0.819157 | 1.345597e-52 | -8.615850e-47 |
| Msa0803860 | Msa0909710 | 0.801271 | 9.741930e-49 | -8.615850e-47 |
| Msa0803860 | Msa1018020 | -0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0803860 | Msa1130650 | 0.805581 | 1.245557e-49 | -8.615850e-47 |
| Msa0803860 | Msa1440610 | 0.804672 | 1.930436e-49 | -8.615850e-47 |
| Msa0516450 | Msa0803860 | 0.820260 | 7.534305e-53 | -8.615850e-47 |
| Msa0577230 | Msa0803860 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803860 | MtrunA17_Chr5g0411611 | 97.867 | 422 | 9 | 0 | 1 | 422 | 1 | 422 | 0.0 | 857 |
| Msa0803860 | MtrunA17_Chr2g0291781 | 44.611 | 334 | 184 | 1 | 71 | 403 | 70 | 403 | 2.30e-106 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803860 | AT4G37920.1 | 69.832 | 358 | 103 | 1 | 63 | 415 | 62 | 419 | 0.0 | 523 |
| Msa0803860 | AT1G36320.1 | 45.181 | 332 | 180 | 2 | 74 | 403 | 83 | 414 | 5.56e-103 | 312 |
Find 129 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTAGCTTTATTTCTTT+TGG | 0.108146 | 5_3:+19254335 | None:intergenic |
| GGAGGAAATACTTGGTATTT+AGG | 0.164229 | 5_3:-19256735 | Msa0803860:CDS |
| ATTAAGGATATCATCAAATT+TGG | 0.219733 | 5_3:+19255918 | None:intergenic |
| CGCCAAAGGAACTGCATAAA+TGG | 0.220810 | 5_3:-19254105 | Msa0803860:CDS |
| TCAGAGGTTGAAATTGTAAA+AGG | 0.263766 | 5_3:-19256829 | Msa0803860:CDS |
| CGATAATACTCTGATGAATA+TGG | 0.264010 | 5_3:-19255962 | Msa0803860:CDS |
| TCTCCATGTCAGCTCTTCTT+TGG | 0.269598 | 5_3:+19256671 | None:intergenic |
| ACAAGTCCTCTTATATAAAA+AGG | 0.271947 | 5_3:+19253751 | None:intergenic |
| GTATAAAGCATTAGGATCTT+TGG | 0.272436 | 5_3:+19254232 | None:intergenic |
| GAAGGTGGTGGTGATGTTTA+AGG | 0.279961 | 5_3:+19257928 | None:intergenic |
| ATTGAACCAATGAAGATCTT+TGG | 0.302329 | 5_3:-19253644 | Msa0803860:three_prime_UTR |
| AAGAAGCGCATAGAAGAAAA+TGG | 0.305531 | 5_3:+19257810 | None:intergenic |
| TACTATTGAGAAGGAATATA+TGG | 0.309142 | 5_3:-19253972 | Msa0803860:CDS |
| AAATTCTGAGTTATAAGTTT+TGG | 0.310065 | 5_3:+19257839 | None:intergenic |
| TTTGCGCCTTCGTGCAACTA+TGG | 0.323817 | 5_3:+19256181 | None:intergenic |
| AGTTTATGTGTGTTGGATTA+CGG | 0.325544 | 5_3:+19253434 | None:intergenic |
| GAGGAAATACTTGGTATTTA+GGG | 0.333790 | 5_3:-19256734 | Msa0803860:CDS |
| GTTTATGTGTGTTGGATTAC+GGG | 0.339873 | 5_3:+19253435 | None:intergenic |
| TTTCCTCCAGTCCTTTGATT+TGG | 0.345589 | 5_3:+19256750 | None:intergenic |
| TCATCTTCAGTCTCAGACTT+TGG | 0.352848 | 5_3:+19253935 | None:intergenic |
| TCCAGAGTTCTTCTATTTGT+AGG | 0.353298 | 5_3:-19253368 | Msa0803860:three_prime_UTR |
| TCTTACGTGTATAAAGCATT+AGG | 0.355481 | 5_3:+19254224 | None:intergenic |
| CATCGATGGAAGGAGAATTA+AGG | 0.374620 | 5_3:+19255902 | None:intergenic |
| CTACCACCAAAGATCTTCAT+TGG | 0.379198 | 5_3:+19253638 | None:intergenic |
| AAAGAACAAACAACCTCAAC+TGG | 0.380848 | 5_3:-19257982 | Msa0803860:five_prime_UTR |
| TCTTTGTGGTCTTGTACAAT+TGG | 0.391209 | 5_3:+19254378 | None:intergenic |
| ATCCATTTATGCAGTTCCTT+TGG | 0.397798 | 5_3:+19254103 | None:intergenic |
| AAGGCAGAGAATCGCTCCTC+GGG | 0.398295 | 5_3:+19254290 | None:intergenic |
| GGGACGAATGGAAGAAATAT+AGG | 0.410593 | 5_3:-19256714 | Msa0803860:CDS |
| AGTCCTTAGGCTGCTCTTTG+TGG | 0.422808 | 5_3:+19254364 | None:intergenic |
| ACGCCAGCGGAGGTTGGTTA+AGG | 0.425324 | 5_3:-19253586 | Msa0803860:three_prime_UTR |
| TTGGCAACAGCTTTCTCCCC+TGG | 0.430811 | 5_3:-19254269 | Msa0803860:CDS |
| AGAAGCGCATAGAAGAAAAT+GGG | 0.432470 | 5_3:+19257811 | None:intergenic |
| AACAACCTCTGAATAACTAT+AGG | 0.451269 | 5_3:+19254007 | None:intergenic |
| GATCGAGAGAAGCGTGAGGC+AGG | 0.452243 | 5_3:-19253854 | Msa0803860:three_prime_UTR |
| ATTATCATTGAAAGGGAAGA+AGG | 0.456003 | 5_3:+19257910 | None:intergenic |
| GAGTTTACCAAGGTCATGAT+AGG | 0.464950 | 5_3:+19253457 | None:intergenic |
| GTATACAAGTTTATGTGTGT+TGG | 0.465137 | 5_3:+19253427 | None:intergenic |
| CAGAGATTATTATCATTGAA+AGG | 0.473233 | 5_3:+19257902 | None:intergenic |
| AGTTGGCTCATGCCTCATAA+TGG | 0.479037 | 5_3:-19253563 | Msa0803860:three_prime_UTR |
| TATTGTTGATAAGCGGTGCT+TGG | 0.480704 | 5_3:-19255822 | Msa0803860:CDS |
| AACAGTGATTAGCTCTGACT+TGG | 0.487517 | 5_3:-19253398 | Msa0803860:three_prime_UTR |
| CGAGGAGCGATTCTCTGCCT+TGG | 0.487679 | 5_3:-19254288 | Msa0803860:CDS |
| GTTGAGTCCGCGCCATTATG+AGG | 0.488665 | 5_3:+19253551 | None:intergenic |
| AATTTACTTCATTGGGGAGA+AGG | 0.490271 | 5_3:-19256627 | Msa0803860:CDS |
| AGCTCTTCATGTTCCAGTTG+AGG | 0.490593 | 5_3:+19257969 | None:intergenic |
| ATTGCAGATTGATGATGAAA+TGG | 0.490861 | 5_3:-19256258 | Msa0803860:intron |
| TGCAGCCCTCATGCCAGCAG+TGG | 0.492495 | 5_3:+19253526 | None:intergenic |
| TTGGCTTCATGTTCATCACC+AGG | 0.493887 | 5_3:+19254251 | None:intergenic |
| GCGGAGGTTGGTTAAGGAGT+TGG | 0.494377 | 5_3:-19253580 | Msa0803860:three_prime_UTR |
| GCGGACTCAACTCCCACTGC+TGG | 0.494993 | 5_3:-19253539 | Msa0803860:three_prime_UTR |
| TTTGTTGAACAGGGATCGCC+AGG | 0.496904 | 5_3:-19256020 | Msa0803860:intron |
| TGCAGACACTTACGACAGCC+TGG | 0.498459 | 5_3:-19256120 | Msa0803860:CDS |
| TCAGAGGTTGTTTATCCTCA+AGG | 0.499529 | 5_3:-19253996 | Msa0803860:CDS |
| ATTTACTTCATTGGGGAGAA+GGG | 0.501755 | 5_3:-19256626 | Msa0803860:CDS |
| TTTGTCAGTGATGAGCTTTG+TGG | 0.511556 | 5_3:-19253480 | Msa0803860:three_prime_UTR |
| ATTGTTGATAAGCGGTGCTT+GGG | 0.512100 | 5_3:-19255821 | Msa0803860:CDS |
| AGAGATTATTATCATTGAAA+GGG | 0.519432 | 5_3:+19257903 | None:intergenic |
| GCAGCCCTCATGCCAGCAGT+GGG | 0.525391 | 5_3:+19253527 | None:intergenic |
| AGAAAACCAAATCAAAGGAC+TGG | 0.525978 | 5_3:-19256756 | Msa0803860:CDS |
| ACCTACAAATAGAAGAACTC+TGG | 0.530098 | 5_3:+19253367 | None:intergenic |
| AAAGGAAGGAGTGAGAAAGT+TGG | 0.535741 | 5_3:+19257874 | None:intergenic |
| ACTTGGTATTTAGGGACGAA+TGG | 0.536158 | 5_3:-19256726 | Msa0803860:CDS |
| AAAGGACTGGAGGAAATACT+TGG | 0.536396 | 5_3:-19256743 | Msa0803860:CDS |
| ACTCCTTAACCAACCTCCGC+TGG | 0.537840 | 5_3:+19253583 | None:intergenic |
| GGAGAATGATCCAACAATGA+AGG | 0.538428 | 5_3:-19256653 | Msa0803860:CDS |
| GGAAGGAGTGAGAAAGTTGG+TGG | 0.540171 | 5_3:+19257877 | None:intergenic |
| ATTGGGGAGAAGGGTGAAGA+AGG | 0.543592 | 5_3:-19256617 | Msa0803860:intron |
| TAAGCATTTAGCTCCTAGCC+TGG | 0.543814 | 5_3:+19256002 | None:intergenic |
| CTAGTCTACAGATATTTGAA+AGG | 0.543879 | 5_3:+19253785 | None:intergenic |
| AGTATTATCGTATGCACCGA+CGG | 0.545659 | 5_3:+19255975 | None:intergenic |
| TGTACTTACTAATTACTCAC+TGG | 0.545667 | 5_3:+19253503 | None:intergenic |
| ATGCCAAAGAAGAGCTGACA+TGG | 0.545701 | 5_3:-19256674 | Msa0803860:CDS |
| CAAGGCAGAGAATCGCTCCT+CGG | 0.548857 | 5_3:+19254289 | None:intergenic |
| TACTCTACGCCAGCGGAGGT+TGG | 0.549223 | 5_3:-19253592 | Msa0803860:three_prime_UTR |
| TGGCTTCATGTTCATCACCA+GGG | 0.549446 | 5_3:+19254252 | None:intergenic |
| CAATGAAGATCTTTGGTGGT+AGG | 0.552094 | 5_3:-19253637 | Msa0803860:three_prime_UTR |
| TTGCTCCTCGACTTGAGTCA+TGG | 0.563177 | 5_3:+19256852 | None:intergenic |
| GAACCAATGAAGATCTTTGG+TGG | 0.566033 | 5_3:-19253641 | Msa0803860:three_prime_UTR |
| TCATTGATATTGTTGATAAG+CGG | 0.566445 | 5_3:-19255829 | Msa0803860:CDS |
| GGCTTCATGTTCATCACCAG+GGG | 0.567936 | 5_3:+19254253 | None:intergenic |
| GGAGACGTTAGATGCTGCAC+AGG | 0.568008 | 5_3:-19255941 | Msa0803860:CDS |
| AATCAGATTTGAGAGAAGCT+AGG | 0.570039 | 5_3:-19254042 | Msa0803860:CDS |
| TTTGTGGCCTATCATGACCT+TGG | 0.574145 | 5_3:-19253464 | Msa0803860:three_prime_UTR |
| AGGACTTGTATTATTTCACC+AGG | 0.575361 | 5_3:-19253737 | Msa0803860:three_prime_UTR |
| AACTCCCACTGCTGGCATGA+GGG | 0.575821 | 5_3:-19253531 | Msa0803860:three_prime_UTR |
| TGAACAGGGATCGCCAGGCT+AGG | 0.576051 | 5_3:-19256015 | Msa0803860:intron |
| TAGTCTACAGATATTTGAAA+GGG | 0.577368 | 5_3:+19253786 | None:intergenic |
| CAACTCCCACTGCTGGCATG+AGG | 0.582040 | 5_3:-19253532 | Msa0803860:three_prime_UTR |
| CTGCAATAAGAGAGAGGTAG+CGG | 0.582443 | 5_3:+19256138 | None:intergenic |
| TTTCTTACAAGCTACATCGA+TGG | 0.582969 | 5_3:+19255888 | None:intergenic |
| CGAAGGCGCAAAGATTTCAC+AGG | 0.585357 | 5_3:-19256170 | Msa0803860:CDS |
| CCTCAAGGATACTATTGAGA+AGG | 0.585652 | 5_3:-19253981 | Msa0803860:CDS |
| GAATGAGAAAACCAAATCAA+AGG | 0.587964 | 5_3:-19256761 | Msa0803860:CDS |
| TGCAACTATGGCATTAATGT+CGG | 0.589061 | 5_3:+19256193 | None:intergenic |
| TTACAAGCTACATCGATGGA+AGG | 0.590443 | 5_3:+19255892 | None:intergenic |
| ATCGAGAGAAGCGTGAGGCA+GGG | 0.591392 | 5_3:-19253853 | Msa0803860:three_prime_UTR |
| ATTGAAAGGGAAGAAGGTGG+TGG | 0.591862 | 5_3:+19257916 | None:intergenic |
| ATGGAAGCACTACTAGCTTG+TGG | 0.592140 | 5_3:+19256871 | None:intergenic |
| AATTACCATCACGATCATCC+AGG | 0.596203 | 5_3:+19256102 | None:intergenic |
| ATCTACAACAATGAAGAATG+AGG | 0.596937 | 5_3:-19255785 | Msa0803860:intron |
| GAGTGAAGTGAAACTCACTT+TGG | 0.601689 | 5_3:-19258016 | Msa0803860:five_prime_UTR |
| AGGGGAGAAAGCTGTTGCCA+AGG | 0.601801 | 5_3:+19254271 | None:intergenic |
| CTGATCCTATAGTTATTCAG+AGG | 0.605259 | 5_3:-19254012 | Msa0803860:CDS |
| CAAAAGCCTTGCAAAAGCAA+AGG | 0.608626 | 5_3:-19255863 | Msa0803860:CDS |
| AGACCACAAAGAGCAGCCTA+AGG | 0.611087 | 5_3:-19254367 | Msa0803860:CDS |
| AGGACACTATGAACTTCTCA+AGG | 0.614050 | 5_3:-19256234 | Msa0803860:CDS |
| ATGAAGAGATGAATGAACGT+AGG | 0.620213 | 5_3:-19253825 | Msa0803860:three_prime_UTR |
| GCTAAATGCTTATCTGCCGT+CGG | 0.620400 | 5_3:-19255991 | Msa0803860:CDS |
| CCTTCTCAATAGTATCCTTG+AGG | 0.620696 | 5_3:+19253981 | None:intergenic |
| GATTTACTCTACGCCAGCGG+AGG | 0.625707 | 5_3:-19253596 | Msa0803860:three_prime_UTR |
| TGCTTCCATGACTCAAGTCG+AGG | 0.625947 | 5_3:-19256857 | Msa0803860:CDS |
| ATAATTAAACAGTACGCCAA+AGG | 0.628128 | 5_3:-19254119 | Msa0803860:intron |
| ACTATGGCATTAATGTCGGT+CGG | 0.629779 | 5_3:+19256197 | None:intergenic |
| CAGATTGATGATGAAATGGA+AGG | 0.633538 | 5_3:-19256254 | Msa0803860:CDS |
| GCTCATGCCTCATAATGGCG+CGG | 0.634526 | 5_3:-19253558 | Msa0803860:three_prime_UTR |
| ATCATTGAAAGGGAAGAAGG+TGG | 0.639345 | 5_3:+19257913 | None:intergenic |
| AAGTGTCTGCAATAAGAGAG+AGG | 0.645459 | 5_3:+19256132 | None:intergenic |
| TGAACGTAGGAAGAATGAAG+TGG | 0.646469 | 5_3:-19253812 | Msa0803860:three_prime_UTR |
| TCAAGTCGAGGAGCAATCAG+AGG | 0.653751 | 5_3:-19256845 | Msa0803860:CDS |
| AAACCAAATCAAAGGACTGG+AGG | 0.655210 | 5_3:-19256753 | Msa0803860:CDS |
| GACAGCCTGGATGATCGTGA+TGG | 0.655334 | 5_3:-19256107 | Msa0803860:intron |
| TGGATTACGGGAGTTTACCA+AGG | 0.658595 | 5_3:+19253447 | None:intergenic |
| GAAGCGCATAGAAGAAAATG+GGG | 0.672496 | 5_3:+19257812 | None:intergenic |
| AGATGCATATAATCTGAACA+AGG | 0.677895 | 5_3:-19254068 | Msa0803860:CDS |
| AGGCAGAGAATCGCTCCTCG+GGG | 0.691645 | 5_3:+19254291 | None:intergenic |
| AGTGATTTACTCTACGCCAG+CGG | 0.725440 | 5_3:-19253599 | Msa0803860:three_prime_UTR |
| GCTAAACATCATAGACCCCG+AGG | 0.743122 | 5_3:-19254306 | Msa0803860:CDS |
| TTAATGCCATAGTTGCACGA+AGG | 0.765699 | 5_3:-19256187 | Msa0803860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAAAAACAAAAAAAA+AGG | + | chr5_3:19253699-19253718 | None:intergenic | 10.0% |
| !!! | AAAATGAAATTTTAAAAATG+AGG | + | chr5_3:19255625-19255644 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAATTTCATTTTC+TGG | - | chr5_3:19255626-19255645 | Msa0803860:intron | 10.0% |
| !!! | AAAAATATATCTTTTCTTTA+AGG | - | chr5_3:19257192-19257211 | Msa0803860:intron | 10.0% |
| !!! | TTTGTTGTTCTAATTTATTA+AGG | - | chr5_3:19253737-19253756 | Msa0803860:three_prime_UTR | 15.0% |
| !!! | TAATTTATTAAGGATTTGTT+TGG | - | chr5_3:19253747-19253766 | Msa0803860:three_prime_UTR | 15.0% |
| !! | ACTTATTATATAAGTTATCT+TGG | - | chr5_3:19253855-19253874 | Msa0803860:three_prime_UTR | 15.0% |
| !!! | TAAAAATTGAAATTCCTTTT+AGG | - | chr5_3:19254476-19254495 | Msa0803860:intron | 15.0% |
| !! | AAATTTACTATCATATATCT+AGG | - | chr5_3:19255037-19255056 | Msa0803860:intron | 15.0% |
| !! | TTTAATGAAGAAATAATACA+AGG | + | chr5_3:19256874-19256893 | None:intergenic | 15.0% |
| !! | AGAGATTATTATCATTGAAA+GGG | + | chr5_3:19253471-19253490 | None:intergenic | 20.0% |
| !!! | AAATTCTGAGTTATAAGTTT+TGG | + | chr5_3:19253535-19253554 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATGGAAATA+TGG | - | chr5_3:19254406-19254425 | Msa0803860:intron | 20.0% |
| !! | AAGGAAAAATTTACTTCATT+GGG | - | chr5_3:19254737-19254756 | Msa0803860:intron | 20.0% |
| !!! | TTTTGTTACCAAATAAATGT+TGG | - | chr5_3:19254828-19254847 | Msa0803860:intron | 20.0% |
| !! | ATTAAGGATATCATCAAATT+TGG | + | chr5_3:19255456-19255475 | None:intergenic | 20.0% |
| !! | TATTTATGTCCACTTATTAA+AGG | - | chr5_3:19255799-19255818 | Msa0803860:CDS | 20.0% |
| !!! | TAATTTCATTTTCGCTTAAT+TGG | + | chr5_3:19255829-19255848 | None:intergenic | 20.0% |
| !! | ATAAAGAAAATGTATTTCGT+TGG | + | chr5_3:19256301-19256320 | None:intergenic | 20.0% |
| !! | AACATAATCACATAACTATT+AGG | - | chr5_3:19256425-19256444 | Msa0803860:intron | 20.0% |
| !!! | ACCTATATAATTTTGTTACT+TGG | - | chr5_3:19256767-19256786 | Msa0803860:CDS | 20.0% |
| !! | TCCAAGTAACAAAATTATAT+AGG | + | chr5_3:19256771-19256790 | None:intergenic | 20.0% |
| !! | GTTTAATGTTATAAGAACAA+AGG | + | chr5_3:19256837-19256856 | None:intergenic | 20.0% |
| !! | ATTATTCACATACAAATTAG+AGG | + | chr5_3:19257237-19257256 | None:intergenic | 20.0% |
| !!! | GTTTTTCCTTTTTATATAAG+AGG | - | chr5_3:19257614-19257633 | Msa0803860:intron | 20.0% |
| !!! | AAAATTTTGTAATTGAAACC+TGG | + | chr5_3:19257655-19257674 | None:intergenic | 20.0% |
| !!! | TCAATTACAAAATTTTAAGC+AGG | - | chr5_3:19257659-19257678 | Msa0803860:intron | 20.0% |
| ! | CAGAGATTATTATCATTGAA+AGG | + | chr5_3:19253472-19253491 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTGGTTTTGAA+AGG | + | chr5_3:19253518-19253537 | None:intergenic | 25.0% |
| !!! | GAGTTATAAGTTTTGGTTTT+TGG | + | chr5_3:19253528-19253547 | None:intergenic | 25.0% |
| !! | TATTGTTTTCCATCTCAATT+TGG | - | chr5_3:19253595-19253614 | Msa0803860:three_prime_UTR | 25.0% |
| ! | AAAAATCTTACAAGTGCTTA+TGG | - | chr5_3:19253953-19253972 | Msa0803860:CDS | 25.0% |
| ! | GTTAGAGATTTGAATGTTAA+TGG | - | chr5_3:19254029-19254048 | Msa0803860:CDS | 25.0% |
| !! | GTAAATTTTTCCTTCATTGT+TGG | + | chr5_3:19254731-19254750 | None:intergenic | 25.0% |
| ! | GAAGGAAAAATTTACTTCAT+TGG | - | chr5_3:19254736-19254755 | Msa0803860:intron | 25.0% |
| ! | AGGAAAAATTTACTTCATTG+GGG | - | chr5_3:19254738-19254757 | Msa0803860:intron | 25.0% |
| !! | TGCATTTTCCAACATTTATT+TGG | + | chr5_3:19254839-19254858 | None:intergenic | 25.0% |
| ! | AACAAATTATGGGAAAAAGA+AGG | + | chr5_3:19254868-19254887 | None:intergenic | 25.0% |
| !! | TTTATCCTATTTGTTGAACA+GGG | - | chr5_3:19255342-19255361 | Msa0803860:intron | 25.0% |
| !! | TCATTGATATTGTTGATAAG+CGG | - | chr5_3:19255542-19255561 | Msa0803860:intron | 25.0% |
| ! | AATAAGCAAGCATTATATTC+TGG | + | chr5_3:19255769-19255788 | None:intergenic | 25.0% |
| !! | ATTGGTTTACCTTTAATAAG+TGG | + | chr5_3:19255811-19255830 | None:intergenic | 25.0% |
| ! | TTATCTGTTGTAACTATCTT+AGG | + | chr5_3:19255939-19255958 | None:intergenic | 25.0% |
| !!! | TATAGACTTTTAGCTATTGA+CGG | + | chr5_3:19256001-19256020 | None:intergenic | 25.0% |
| ! | TCAATCTGTTCAACATTTAT+GGG | + | chr5_3:19256698-19256717 | None:intergenic | 25.0% |
| ! | TTCAATCTGTTCAACATTTA+TGG | + | chr5_3:19256699-19256718 | None:intergenic | 25.0% |
| !!! | TTATGGCCTATATTTTTTAG+AGG | - | chr5_3:19256729-19256748 | Msa0803860:CDS | 25.0% |
| !! | ATGACACCTCTAAAAAATAT+AGG | + | chr5_3:19256738-19256757 | None:intergenic | 25.0% |
| !!! | TATATTTTTTAGAGGTGTCA+TGG | - | chr5_3:19256737-19256756 | Msa0803860:CDS | 25.0% |
| ! | ATTTGGCATAAAACAAGAAT+AGG | + | chr5_3:19256897-19256916 | None:intergenic | 25.0% |
| !!! | TCAGTAGCTTTATTTCTTTT+GGG | + | chr5_3:19257038-19257057 | None:intergenic | 25.0% |
| !!! | TTCAGTAGCTTTATTTCTTT+TGG | + | chr5_3:19257039-19257058 | None:intergenic | 25.0% |
| ! | TACTATTGAGAAGGAATATA+TGG | - | chr5_3:19257399-19257418 | Msa0803860:intron | 25.0% |
| ! | TAGTCTACAGATATTTGAAA+GGG | + | chr5_3:19257588-19257607 | None:intergenic | 25.0% |
| ! | ACAAGTCCTCTTATATAAAA+AGG | + | chr5_3:19257623-19257642 | None:intergenic | 25.0% |
| ATTATCATTGAAAGGGAAGA+AGG | + | chr5_3:19253464-19253483 | None:intergenic | 30.0% | |
| GATGGAAAACAATACTTACT+GGG | + | chr5_3:19253589-19253608 | None:intergenic | 30.0% | |
| AGATGGAAAACAATACTTAC+TGG | + | chr5_3:19253590-19253609 | None:intergenic | 30.0% | |
| !!! | TCTTTTGAGTTTTCTCAAGT+TGG | - | chr5_3:19253620-19253639 | Msa0803860:three_prime_UTR | 30.0% |
| !!! | CTTTTGAGTTTTCTCAAGTT+GGG | - | chr5_3:19253621-19253640 | Msa0803860:three_prime_UTR | 30.0% |
| TGTTACTGTAATGAACACAA+AGG | + | chr5_3:19253665-19253684 | None:intergenic | 30.0% | |
| CTAACACTGTCAACAATTTA+GGG | + | chr5_3:19254014-19254033 | None:intergenic | 30.0% | |
| TCTAACACTGTCAACAATTT+AGG | + | chr5_3:19254015-19254034 | None:intergenic | 30.0% | |
| ! | GTTTAATTTCCAGTTGTGTT+AGG | - | chr5_3:19254051-19254070 | Msa0803860:CDS | 30.0% |
| !! | TTAGTAACAGAAAAAGCATC+AGG | + | chr5_3:19254140-19254159 | None:intergenic | 30.0% |
| TAATTAGTTGTGAGACTGTT+TGG | - | chr5_3:19254205-19254224 | Msa0803860:intron | 30.0% | |
| AGCTTATGAAAACAACTTCT+AGG | - | chr5_3:19254287-19254306 | Msa0803860:CDS | 30.0% | |
| ! | GCGCTTAATTAAGTTGTTTA+TGG | - | chr5_3:19254398-19254417 | Msa0803860:CDS | 30.0% |
| AAGATACACCTAAAGACTAT+AGG | + | chr5_3:19254443-19254462 | None:intergenic | 30.0% | |
| TCAGAGGTTGAAATTGTAAA+AGG | - | chr5_3:19254542-19254561 | Msa0803860:intron | 30.0% | |
| GAATGAGAAAACCAAATCAA+AGG | - | chr5_3:19254610-19254629 | Msa0803860:intron | 30.0% | |
| GAGGAAATACTTGGTATTTA+GGG | - | chr5_3:19254637-19254656 | Msa0803860:intron | 30.0% | |
| !! | ATTGCAGATTGATGATGAAA+TGG | - | chr5_3:19255113-19255132 | Msa0803860:intron | 30.0% |
| ! | CTTTATCCTATTTGTTGAAC+AGG | - | chr5_3:19255341-19255360 | Msa0803860:intron | 30.0% |
| CGATAATACTCTGATGAATA+TGG | - | chr5_3:19255409-19255428 | Msa0803860:intron | 30.0% | |
| ATCTACAACAATGAAGAATG+AGG | - | chr5_3:19255586-19255605 | Msa0803860:intron | 30.0% | |
| TACGTTCAAGCTTAAAACAT+AGG | + | chr5_3:19255696-19255715 | None:intergenic | 30.0% | |
| TGATTTATGCGTCAAAATGT+CGG | - | chr5_3:19255725-19255744 | Msa0803860:intron | 30.0% | |
| TGTAACTATCTTAGGAAGTT+AGG | + | chr5_3:19255931-19255950 | None:intergenic | 30.0% | |
| TGAATTCACATTAGAATGAG+AGG | - | chr5_3:19256205-19256224 | Msa0803860:CDS | 30.0% | |
| GAATTCACATTAGAATGAGA+GGG | - | chr5_3:19256206-19256225 | Msa0803860:CDS | 30.0% | |
| AATTCACATTAGAATGAGAG+GGG | - | chr5_3:19256207-19256226 | Msa0803860:CDS | 30.0% | |
| AAAATGTATTTCGTTGGTAC+AGG | + | chr5_3:19256295-19256314 | None:intergenic | 30.0% | |
| TCAAACACTCACTATTGTTT+GGG | + | chr5_3:19256368-19256387 | None:intergenic | 30.0% | |
| TAAAACTTCAGTGAACAAGT+AGG | - | chr5_3:19256391-19256410 | Msa0803860:intron | 30.0% | |
| AAAACTTCAGTGAACAAGTA+GGG | - | chr5_3:19256392-19256411 | Msa0803860:intron | 30.0% | |
| ! | CACAATTCAAGAAACCTTTT+AGG | - | chr5_3:19256661-19256680 | Msa0803860:CDS | 30.0% |
| ! | AATTCAAGAAACCTTTTAGG+TGG | - | chr5_3:19256664-19256683 | Msa0803860:CDS | 30.0% |
| ATATAGGCCATAAAAACTCA+GGG | + | chr5_3:19256722-19256741 | None:intergenic | 30.0% | |
| AATATAGGCCATAAAAACTC+AGG | + | chr5_3:19256723-19256742 | None:intergenic | 30.0% | |
| TGTTATAAGAACAAAGGAAG+AGG | + | chr5_3:19256831-19256850 | None:intergenic | 30.0% | |
| AATATTGCTCAATATTGTGC+AGG | - | chr5_3:19256954-19256973 | Msa0803860:intron | 30.0% | |
| !!! | CAGTAGCTTTATTTCTTTTG+GGG | + | chr5_3:19257037-19257056 | None:intergenic | 30.0% |
| ! | GTATAAAGCATTAGGATCTT+TGG | + | chr5_3:19257142-19257161 | None:intergenic | 30.0% |
| ! | TCTTACGTGTATAAAGCATT+AGG | + | chr5_3:19257150-19257169 | None:intergenic | 30.0% |
| ATAATTAAACAGTACGCCAA+AGG | - | chr5_3:19257252-19257271 | Msa0803860:intron | 30.0% | |
| AGATGCATATAATCTGAACA+AGG | - | chr5_3:19257303-19257322 | Msa0803860:intron | 30.0% | |
| AACAACCTCTGAATAACTAT+AGG | + | chr5_3:19257367-19257386 | None:intergenic | 30.0% | |
| !!! | CAATCAGAAGTGTTTTAAGT+TGG | - | chr5_3:19257463-19257482 | Msa0803860:intron | 30.0% |
| CTAGTCTACAGATATTTGAA+AGG | + | chr5_3:19257589-19257608 | None:intergenic | 30.0% | |
| ATTGAACCAATGAAGATCTT+TGG | - | chr5_3:19257727-19257746 | Msa0803860:intron | 30.0% | |
| TGTACTTACTAATTACTCAC+TGG | + | chr5_3:19257871-19257890 | None:intergenic | 30.0% | |
| AGTTTATGTGTGTTGGATTA+CGG | + | chr5_3:19257940-19257959 | None:intergenic | 30.0% | |
| GTATACAAGTTTATGTGTGT+TGG | + | chr5_3:19257947-19257966 | None:intergenic | 30.0% | |
| !!! | AGAGCTAATCACTGTTTTTT+TGG | + | chr5_3:19257969-19257988 | None:intergenic | 30.0% |
| AAAGAACAAACAACCTCAAC+TGG | - | chr5_3:19253389-19253408 | Msa0803860:three_prime_UTR | 35.0% | |
| !!! | GGTTTTTGGTTTTGAAAGGA+AGG | + | chr5_3:19253514-19253533 | None:intergenic | 35.0% |
| ! | AGAAGCGCATAGAAGAAAAT+GGG | + | chr5_3:19253563-19253582 | None:intergenic | 35.0% |
| ! | AAGAAGCGCATAGAAGAAAA+TGG | + | chr5_3:19253564-19253583 | None:intergenic | 35.0% |
| CAAAAGACACCAAATTGAGA+TGG | + | chr5_3:19253607-19253626 | None:intergenic | 35.0% | |
| AAGTTATCTTGGAGAGCTTA+TGG | - | chr5_3:19253866-19253885 | Msa0803860:three_prime_UTR | 35.0% | |
| AGAAAACCAAATCAAAGGAC+TGG | - | chr5_3:19254615-19254634 | Msa0803860:intron | 35.0% | |
| GGAGGAAATACTTGGTATTT+AGG | - | chr5_3:19254636-19254655 | Msa0803860:intron | 35.0% | |
| AATTTACTTCATTGGGGAGA+AGG | - | chr5_3:19254744-19254763 | Msa0803860:intron | 35.0% | |
| ATTTACTTCATTGGGGAGAA+GGG | - | chr5_3:19254745-19254764 | Msa0803860:intron | 35.0% | |
| TTCATCTGTTCTGTATGATC+AGG | - | chr5_3:19255083-19255102 | Msa0803860:intron | 35.0% | |
| !! | CAGATTGATGATGAAATGGA+AGG | - | chr5_3:19255117-19255136 | Msa0803860:intron | 35.0% |
| TGCAACTATGGCATTAATGT+CGG | + | chr5_3:19255181-19255200 | None:intergenic | 35.0% | |
| TTTCTTACAAGCTACATCGA+TGG | + | chr5_3:19255486-19255505 | None:intergenic | 35.0% | |
| AGTGGACATAAATACATCTG+AGG | + | chr5_3:19255793-19255812 | None:intergenic | 35.0% | |
| CACACATATTATGACACTCA+AGG | - | chr5_3:19256103-19256122 | Msa0803860:intron | 35.0% | |
| CTCAAACACTCACTATTGTT+TGG | + | chr5_3:19256369-19256388 | None:intergenic | 35.0% | |
| TAACTATTAGGTGAAGTGTG+TGG | - | chr5_3:19256437-19256456 | Msa0803860:intron | 35.0% | |
| ACAAGACATGAGTTCAACTT+CGG | + | chr5_3:19256481-19256500 | None:intergenic | 35.0% | |
| CTCATTATAGTCAGAAAGTG+TGG | - | chr5_3:19256543-19256562 | Msa0803860:intron | 35.0% | |
| CTGATCATATTTGCATCTCT+AGG | + | chr5_3:19256632-19256651 | None:intergenic | 35.0% | |
| ! | GATTGAACCCTGAGTTTTTA+TGG | - | chr5_3:19256712-19256731 | Msa0803860:CDS | 35.0% |
| CCTTGTTAGGGAAATTACTT+TGG | + | chr5_3:19256801-19256820 | None:intergenic | 35.0% | |
| CCAAAGTAATTTCCCTAACA+AGG | - | chr5_3:19256798-19256817 | Msa0803860:CDS | 35.0% | |
| !! | AGAGGTATTTCACCTTGTTA+GGG | + | chr5_3:19256813-19256832 | None:intergenic | 35.0% |
| !! | AAGAGGTATTTCACCTTGTT+AGG | + | chr5_3:19256814-19256833 | None:intergenic | 35.0% |
| TATGCAGTGAGTCTACAATT+TGG | + | chr5_3:19256914-19256933 | None:intergenic | 35.0% | |
| !! | TCTTTGTGGTCTTGTACAAT+TGG | + | chr5_3:19256996-19257015 | None:intergenic | 35.0% |
| ATCCATTTATGCAGTTCCTT+TGG | + | chr5_3:19257271-19257290 | None:intergenic | 35.0% | |
| AATCAGATTTGAGAGAAGCT+AGG | - | chr5_3:19257329-19257348 | Msa0803860:intron | 35.0% | |
| CTGATCCTATAGTTATTCAG+AGG | - | chr5_3:19257359-19257378 | Msa0803860:intron | 35.0% | |
| ATGAAGAGATGAATGAACGT+AGG | - | chr5_3:19257546-19257565 | Msa0803860:intron | 35.0% | |
| AGGACTTGTATTATTTCACC+AGG | - | chr5_3:19257634-19257653 | Msa0803860:intron | 35.0% | |
| GTTTATGTGTGTTGGATTAC+GGG | + | chr5_3:19257939-19257958 | None:intergenic | 35.0% | |
| TCCAGAGTTCTTCTATTTGT+AGG | - | chr5_3:19258003-19258022 | Msa0803860:five_prime_UTR | 35.0% | |
| ACCTACAAATAGAAGAACTC+TGG | + | chr5_3:19258007-19258026 | None:intergenic | 35.0% | |
| GAGTGAAGTGAAACTCACTT+TGG | - | chr5_3:19253355-19253374 | Msa0803860:three_prime_UTR | 40.0% | |
| ATCATTGAAAGGGAAGAAGG+TGG | + | chr5_3:19253461-19253480 | None:intergenic | 40.0% | |
| AAAGGAAGGAGTGAGAAAGT+TGG | + | chr5_3:19253500-19253519 | None:intergenic | 40.0% | |
| GAAGCGCATAGAAGAAAATG+GGG | + | chr5_3:19253562-19253581 | None:intergenic | 40.0% | |
| TGTCTCTTTCCTAACACAAC+TGG | + | chr5_3:19254063-19254082 | None:intergenic | 40.0% | |
| !! | CAGAAAAAGCATCAGGAACA+TGG | + | chr5_3:19254133-19254152 | None:intergenic | 40.0% |
| !! | AAAGACTATAGGCTAGCTTG+TGG | + | chr5_3:19254432-19254451 | None:intergenic | 40.0% |
| ! | CAAGCTAGCCTATAGTCTTT+AGG | - | chr5_3:19254432-19254451 | Msa0803860:intron | 40.0% |
| ! | TACTAGCTTGTGGACCTAAA+AGG | + | chr5_3:19254493-19254512 | None:intergenic | 40.0% |
| AAACCAAATCAAAGGACTGG+AGG | - | chr5_3:19254618-19254637 | Msa0803860:intron | 40.0% | |
| TTTCCTCCAGTCCTTTGATT+TGG | + | chr5_3:19254624-19254643 | None:intergenic | 40.0% | |
| AAAGGACTGGAGGAAATACT+TGG | - | chr5_3:19254628-19254647 | Msa0803860:intron | 40.0% | |
| ACTTGGTATTTAGGGACGAA+TGG | - | chr5_3:19254645-19254664 | Msa0803860:intron | 40.0% | |
| GGGACGAATGGAAGAAATAT+AGG | - | chr5_3:19254657-19254676 | Msa0803860:intron | 40.0% | |
| GGAGAATGATCCAACAATGA+AGG | - | chr5_3:19254718-19254737 | Msa0803860:intron | 40.0% | |
| CATATATCTAGGCACTTGCT+TGG | - | chr5_3:19255048-19255067 | Msa0803860:intron | 40.0% | |
| AGGACACTATGAACTTCTCA+AGG | - | chr5_3:19255137-19255156 | Msa0803860:intron | 40.0% | |
| ACTATGGCATTAATGTCGGT+CGG | + | chr5_3:19255177-19255196 | None:intergenic | 40.0% | |
| TTAATGCCATAGTTGCACGA+AGG | - | chr5_3:19255184-19255203 | Msa0803860:intron | 40.0% | |
| AAGTGTCTGCAATAAGAGAG+AGG | + | chr5_3:19255242-19255261 | None:intergenic | 40.0% | |
| AATTACCATCACGATCATCC+AGG | + | chr5_3:19255272-19255291 | None:intergenic | 40.0% | |
| AGTATTATCGTATGCACCGA+CGG | + | chr5_3:19255399-19255418 | None:intergenic | 40.0% | |
| CATCGATGGAAGGAGAATTA+AGG | + | chr5_3:19255472-19255491 | None:intergenic | 40.0% | |
| TTACAAGCTACATCGATGGA+AGG | + | chr5_3:19255482-19255501 | None:intergenic | 40.0% | |
| CAAAAGCCTTGCAAAAGCAA+AGG | - | chr5_3:19255508-19255527 | Msa0803860:intron | 40.0% | |
| !! | CAAGTTCCTTTGCTTTTGCA+AGG | + | chr5_3:19255517-19255536 | None:intergenic | 40.0% |
| ! | TATTGTTGATAAGCGGTGCT+TGG | - | chr5_3:19255549-19255568 | Msa0803860:intron | 40.0% |
| ! | ATTGTTGATAAGCGGTGCTT+GGG | - | chr5_3:19255550-19255569 | Msa0803860:intron | 40.0% |
| TATGCGTCAAAATGTCGGAA+TGG | - | chr5_3:19255730-19255749 | Msa0803860:intron | 40.0% | |
| TATGACACTCAAGGCTGAAA+AGG | - | chr5_3:19256112-19256131 | Msa0803860:CDS | 40.0% | |
| ATGACACTCAAGGCTGAAAA+GGG | - | chr5_3:19256113-19256132 | Msa0803860:CDS | 40.0% | |
| GATCACCAATGCAAAAAGTC+AGG | - | chr5_3:19256144-19256163 | Msa0803860:CDS | 40.0% | |
| ! | ATGTGCCTGACTTTTTGCAT+TGG | + | chr5_3:19256152-19256171 | None:intergenic | 40.0% |
| TGTATGAGACTGTACAAACG+AGG | - | chr5_3:19256243-19256262 | Msa0803860:CDS | 40.0% | |
| TTGCGGTGTATTCACATTCA+CGG | + | chr5_3:19256343-19256362 | None:intergenic | 40.0% | |
| TCACTATTGTTTGGGTCTTG+CGG | + | chr5_3:19256360-19256379 | None:intergenic | 40.0% | |
| ! | TGTGTGGAAGTTGATCATCA+AGG | - | chr5_3:19256453-19256472 | Msa0803860:intron | 40.0% |
| TCAGAGGTTGTTTATCCTCA+AGG | - | chr5_3:19257375-19257394 | Msa0803860:intron | 40.0% | |
| CCTTCTCAATAGTATCCTTG+AGG | + | chr5_3:19257393-19257412 | None:intergenic | 40.0% | |
| CCTCAAGGATACTATTGAGA+AGG | - | chr5_3:19257390-19257409 | Msa0803860:intron | 40.0% | |
| TCATCTTCAGTCTCAGACTT+TGG | + | chr5_3:19257439-19257458 | None:intergenic | 40.0% | |
| ATCAAAAACGGGATCACGAA+CGG | + | chr5_3:19257500-19257519 | None:intergenic | 40.0% | |
| ACGCTTCTCTCGATCAAAAA+CGG | + | chr5_3:19257512-19257531 | None:intergenic | 40.0% | |
| TGAACGTAGGAAGAATGAAG+TGG | - | chr5_3:19257559-19257578 | Msa0803860:intron | 40.0% | |
| GAACCAATGAAGATCTTTGG+TGG | - | chr5_3:19257730-19257749 | Msa0803860:intron | 40.0% | |
| CTACCACCAAAGATCTTCAT+TGG | + | chr5_3:19257736-19257755 | None:intergenic | 40.0% | |
| ! | CAATGAAGATCTTTGGTGGT+AGG | - | chr5_3:19257734-19257753 | Msa0803860:intron | 40.0% |
| TTTGTCAGTGATGAGCTTTG+TGG | - | chr5_3:19257891-19257910 | Msa0803860:CDS | 40.0% | |
| GAGTTTACCAAGGTCATGAT+AGG | + | chr5_3:19257917-19257936 | None:intergenic | 40.0% | |
| !! | AACAGTGATTAGCTCTGACT+TGG | - | chr5_3:19257973-19257992 | Msa0803860:exon | 40.0% |
| AGCTCTTCATGTTCCAGTTG+AGG | + | chr5_3:19253405-19253424 | None:intergenic | 45.0% | |
| ! | GAAGGTGGTGGTGATGTTTA+AGG | + | chr5_3:19253446-19253465 | None:intergenic | 45.0% |
| ATTGAAAGGGAAGAAGGTGG+TGG | + | chr5_3:19253458-19253477 | None:intergenic | 45.0% | |
| !! | ATGGAAGCACTACTAGCTTG+TGG | + | chr5_3:19254503-19254522 | None:intergenic | 45.0% |
| ATGCCAAAGAAGAGCTGACA+TGG | - | chr5_3:19254697-19254716 | Msa0803860:intron | 45.0% | |
| TCTCCATGTCAGCTCTTCTT+TGG | + | chr5_3:19254703-19254722 | None:intergenic | 45.0% | |
| CTGCAATAAGAGAGAGGTAG+CGG | + | chr5_3:19255236-19255255 | None:intergenic | 45.0% | |
| GCGATCCCTGTTCAACAAAT+AGG | + | chr5_3:19255350-19255369 | None:intergenic | 45.0% | |
| ! | TAAGCATTTAGCTCCTAGCC+TGG | + | chr5_3:19255372-19255391 | None:intergenic | 45.0% |
| GCTAAATGCTTATCTGCCGT+CGG | - | chr5_3:19255380-19255399 | Msa0803860:intron | 45.0% | |
| !! | TGTCGGAATGGTCTTGTTGA+TGG | - | chr5_3:19255742-19255761 | Msa0803860:intron | 45.0% |
| ACTCAAGGCTGAAAAGGGAA+GGG | - | chr5_3:19256118-19256137 | Msa0803860:CDS | 45.0% | |
| CAAAAAGTCAGGCACATGAG+TGG | - | chr5_3:19256155-19256174 | Msa0803860:CDS | 45.0% | |
| TGCGGTGTATTCACATTCAC+GGG | + | chr5_3:19256342-19256361 | None:intergenic | 45.0% | |
| GGGTTACAGTACCACCTAAA+AGG | + | chr5_3:19256678-19256697 | None:intergenic | 45.0% | |
| !!! | CTTTTGGGGCAATAGTCCTT+AGG | + | chr5_3:19257023-19257042 | None:intergenic | 45.0% |
| TGGCTTCATGTTCATCACCA+GGG | + | chr5_3:19257122-19257141 | None:intergenic | 45.0% | |
| TTGGCTTCATGTTCATCACC+AGG | + | chr5_3:19257123-19257142 | None:intergenic | 45.0% | |
| CGCCAAAGGAACTGCATAAA+TGG | - | chr5_3:19257266-19257285 | Msa0803860:intron | 45.0% | |
| TCAAAAACGGGATCACGAAC+GGG | + | chr5_3:19257499-19257518 | None:intergenic | 45.0% | |
| CGCTTCTCTCGATCAAAAAC+GGG | + | chr5_3:19257511-19257530 | None:intergenic | 45.0% | |
| !! | TTTTGATCGAGAGAAGCGTG+AGG | - | chr5_3:19257513-19257532 | Msa0803860:intron | 45.0% |
| AGTGATTTACTCTACGCCAG+CGG | - | chr5_3:19257772-19257791 | Msa0803860:intron | 45.0% | |
| ! | AGTTGGCTCATGCCTCATAA+TGG | - | chr5_3:19257808-19257827 | Msa0803860:CDS | 45.0% |
| TTTGTGGCCTATCATGACCT+TGG | - | chr5_3:19257907-19257926 | Msa0803860:CDS | 45.0% | |
| TGGATTACGGGAGTTTACCA+AGG | + | chr5_3:19257927-19257946 | None:intergenic | 45.0% | |
| !! | AAAATTATAAAACAAATTAT+GGG | + | chr5_3:19254878-19254897 | None:intergenic | 5.0% |
| !! | AAAAATTATAAAACAAATTA+TGG | + | chr5_3:19254879-19254898 | None:intergenic | 5.0% |
| GGAAGGAGTGAGAAAGTTGG+TGG | + | chr5_3:19253497-19253516 | None:intergenic | 50.0% | |
| TGCTTCCATGACTCAAGTCG+AGG | - | chr5_3:19254514-19254533 | Msa0803860:intron | 50.0% | |
| ! | TTGCTCCTCGACTTGAGTCA+TGG | + | chr5_3:19254522-19254541 | None:intergenic | 50.0% |
| TCAAGTCGAGGAGCAATCAG+AGG | - | chr5_3:19254526-19254545 | Msa0803860:intron | 50.0% | |
| ATTGGGGAGAAGGGTGAAGA+AGG | - | chr5_3:19254754-19254773 | Msa0803860:intron | 50.0% | |
| TTTGCGCCTTCGTGCAACTA+TGG | + | chr5_3:19255193-19255212 | None:intergenic | 50.0% | |
| ! | CGAAGGCGCAAAGATTTCAC+AGG | - | chr5_3:19255201-19255220 | Msa0803860:intron | 50.0% |
| TTTGTTGAACAGGGATCGCC+AGG | - | chr5_3:19255351-19255370 | Msa0803860:intron | 50.0% | |
| CACTCAAGGCTGAAAAGGGA+AGG | - | chr5_3:19256117-19256136 | Msa0803860:CDS | 50.0% | |
| ATACGCCACTCTGCCAAGAA+GGG | + | chr5_3:19256182-19256201 | None:intergenic | 50.0% | |
| GCGGTGTATTCACATTCACG+GGG | + | chr5_3:19256341-19256360 | None:intergenic | 50.0% | |
| AGACCACAAAGAGCAGCCTA+AGG | - | chr5_3:19257004-19257023 | Msa0803860:intron | 50.0% | |
| AGTCCTTAGGCTGCTCTTTG+TGG | + | chr5_3:19257010-19257029 | None:intergenic | 50.0% | |
| GCTAAACATCATAGACCCCG+AGG | - | chr5_3:19257065-19257084 | Msa0803860:intron | 50.0% | |
| GGCTTCATGTTCATCACCAG+GGG | + | chr5_3:19257121-19257140 | None:intergenic | 50.0% | |
| TGCAGACACTTACGACAGCC+TGG | - | chr5_3:19255251-19255270 | Msa0803860:intron | 55.0% | |
| GACAGCCTGGATGATCGTGA+TGG | - | chr5_3:19255264-19255283 | Msa0803860:intron | 55.0% | |
| GGAGACGTTAGATGCTGCAC+AGG | - | chr5_3:19255430-19255449 | Msa0803860:intron | 55.0% | |
| TACGCCACTCTGCCAAGAAG+GGG | + | chr5_3:19256181-19256200 | None:intergenic | 55.0% | |
| CATACGCCACTCTGCCAAGA+AGG | + | chr5_3:19256183-19256202 | None:intergenic | 55.0% | |
| AAGGCAGAGAATCGCTCCTC+GGG | + | chr5_3:19257084-19257103 | None:intergenic | 55.0% | |
| CAAGGCAGAGAATCGCTCCT+CGG | + | chr5_3:19257085-19257104 | None:intergenic | 55.0% | |
| AGGGGAGAAAGCTGTTGCCA+AGG | + | chr5_3:19257103-19257122 | None:intergenic | 55.0% | |
| TTGGCAACAGCTTTCTCCCC+TGG | - | chr5_3:19257102-19257121 | Msa0803860:intron | 55.0% | |
| ! | ATCGAGAGAAGCGTGAGGCA+GGG | - | chr5_3:19257518-19257537 | Msa0803860:intron | 55.0% |
| GATTTACTCTACGCCAGCGG+AGG | - | chr5_3:19257775-19257794 | Msa0803860:intron | 55.0% | |
| ACTCCTTAACCAACCTCCGC+TGG | + | chr5_3:19257791-19257810 | None:intergenic | 55.0% | |
| ! | GCGGAGGTTGGTTAAGGAGT+TGG | - | chr5_3:19257791-19257810 | Msa0803860:intron | 55.0% |
| GCTCATGCCTCATAATGGCG+CGG | - | chr5_3:19257813-19257832 | Msa0803860:CDS | 55.0% | |
| GTTGAGTCCGCGCCATTATG+AGG | + | chr5_3:19257823-19257842 | None:intergenic | 55.0% | |
| AACTCCCACTGCTGGCATGA+GGG | - | chr5_3:19257840-19257859 | Msa0803860:CDS | 55.0% | |
| TGAACAGGGATCGCCAGGCT+AGG | - | chr5_3:19255356-19255375 | Msa0803860:intron | 60.0% | |
| GCACATGAGTGGCCCCTTCT+TGG | - | chr5_3:19256166-19256185 | Msa0803860:CDS | 60.0% | |
| AGGCAGAGAATCGCTCCTCG+GGG | + | chr5_3:19257083-19257102 | None:intergenic | 60.0% | |
| CGAGGAGCGATTCTCTGCCT+TGG | - | chr5_3:19257083-19257102 | Msa0803860:intron | 60.0% | |
| ! | GATCGAGAGAAGCGTGAGGC+AGG | - | chr5_3:19257517-19257536 | Msa0803860:intron | 60.0% |
| TACTCTACGCCAGCGGAGGT+TGG | - | chr5_3:19257779-19257798 | Msa0803860:intron | 60.0% | |
| ! | ACGCCAGCGGAGGTTGGTTA+AGG | - | chr5_3:19257785-19257804 | Msa0803860:intron | 60.0% |
| CAACTCCCACTGCTGGCATG+AGG | - | chr5_3:19257839-19257858 | Msa0803860:CDS | 60.0% | |
| GTGGCCCCTTCTTGGCAGAG+TGG | - | chr5_3:19256174-19256193 | Msa0803860:CDS | 65.0% | |
| GCGGACTCAACTCCCACTGC+TGG | - | chr5_3:19257832-19257851 | Msa0803860:CDS | 65.0% | |
| GCAGCCCTCATGCCAGCAGT+GGG | + | chr5_3:19257847-19257866 | None:intergenic | 65.0% | |
| TGCAGCCCTCATGCCAGCAG+TGG | + | chr5_3:19257848-19257867 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19253353 | 19258040 | 19253353 | ID=Msa0803860;Name=Msa0803860 |
| chr5_3 | mRNA | 19253353 | 19258040 | 19253353 | ID=Msa0803860-mRNA-1;Parent=Msa0803860;Name=Msa0803860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=62|1|1|1|0.8|0.66|6|560|422 |
| chr5_3 | exon | 19253353 | 19254129 | 19253353 | ID=Msa0803860-mRNA-1:exon:7917;Parent=Msa0803860-mRNA-1 |
| chr5_3 | exon | 19254230 | 19254417 | 19254230 | ID=Msa0803860-mRNA-1:exon:7916;Parent=Msa0803860-mRNA-1 |
| chr5_3 | exon | 19255786 | 19256030 | 19255786 | ID=Msa0803860-mRNA-1:exon:7915;Parent=Msa0803860-mRNA-1 |
| chr5_3 | exon | 19256108 | 19256273 | 19256108 | ID=Msa0803860-mRNA-1:exon:7914;Parent=Msa0803860-mRNA-1 |
| chr5_3 | exon | 19256618 | 19256895 | 19256618 | ID=Msa0803860-mRNA-1:exon:7913;Parent=Msa0803860-mRNA-1 |
| chr5_3 | exon | 19257804 | 19258040 | 19257804 | ID=Msa0803860-mRNA-1:exon:7912;Parent=Msa0803860-mRNA-1 |
| chr5_3 | five_prime_UTR | 19257979 | 19258040 | 19257979 | ID=Msa0803860-mRNA-1:five_prime_utr;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19257804 | 19257978 | 19257804 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19256618 | 19256895 | 19256618 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19256108 | 19256273 | 19256108 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19255786 | 19256030 | 19255786 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19254230 | 19254417 | 19254230 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | CDS | 19253913 | 19254129 | 19253913 | ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1 |
| chr5_3 | three_prime_UTR | 19253353 | 19253912 | 19253353 | ID=Msa0803860-mRNA-1:three_prime_utr;Parent=Msa0803860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
