AlfalfaGEDB | Msa0803860

M. sativa cultivar zhongmu-4 / Msa0803860

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803860	XP_003612948.1	97.867	422	9	0	1	422	1	422	0.0	857

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803860	sp\|Q84WN0\|Y4920_ARATH	69.832	358	103	1	63	415	62	419	0.0	523

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803860	A9YWR5	97.867	422	9	0	1	422	1	422	0.0	857

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050720	Msa0803860	0.803914	2.776924e-49	-8.615850e-47
Msa0050770	Msa0803860	0.822392	2.428424e-53	-8.615850e-47
Msa0516450	Msa0803860	0.820260	7.534305e-53	-8.615850e-47
Msa0577230	Msa0803860	0.813915	2.009630e-51	-8.615850e-47
Msa0720770	Msa0803860	0.883878	3.089500e-71	-8.615850e-47
Msa0750380	Msa0803860	0.819415	1.175329e-52	-8.615850e-47
Msa0761400	Msa0803860	0.883342	4.868202e-71	-8.615850e-47
Msa0780140	Msa0803860	0.802128	6.498137e-49	-8.615850e-47
Msa0794460	Msa0803860	0.805478	1.309263e-49	-8.615850e-47
Msa0803860	Msa0824140	0.809718	1.647063e-50	-8.615850e-47

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803860	MtrunA17_Chr5g0411611	97.867	422	9	0	1	422	1	422	0.0	857
Msa0803860	MtrunA17_Chr2g0291781	44.611	334	184	1	71	403	70	403	2.30e-106	320

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803860	AT4G37920.1	69.832	358	103	1	63	415	62	419	0.0	523
Msa0803860	AT1G36320.1	45.181	332	180	2	74	403	83	414	5.56e-103	312

Showing 1 to 2 of 2 entries

Previous1Next

Find 129 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAATCAAAGGACTGG+AGG	0.655210	5_3:-19256753	Msa0803860:CDS
AAAGAACAAACAACCTCAAC+TGG	0.380848	5_3:-19257982	Msa0803860:five_prime_UTR
AAAGGAAGGAGTGAGAAAGT+TGG	0.535741	5_3:+19257874	None:intergenic
AAAGGACTGGAGGAAATACT+TGG	0.536396	5_3:-19256743	Msa0803860:CDS
AAATTCTGAGTTATAAGTTT+TGG	0.310065	5_3:+19257839	None:intergenic
AACAACCTCTGAATAACTAT+AGG	0.451269	5_3:+19254007	None:intergenic
AACAGTGATTAGCTCTGACT+TGG	0.487517	5_3:-19253398	Msa0803860:three_prime_UTR
AACTCCCACTGCTGGCATGA+GGG	0.575821	5_3:-19253531	Msa0803860:three_prime_UTR
AAGAAGCGCATAGAAGAAAA+TGG	0.305531	5_3:+19257810	None:intergenic
AAGGCAGAGAATCGCTCCTC+GGG	0.398295	5_3:+19254290	None:intergenic

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTATCATTGAAAGGGAAGA+AGG	+	chr5_3:19253464-19253483	None:intergenic	30.0%
GATGGAAAACAATACTTACT+GGG	+	chr5_3:19253589-19253608	None:intergenic	30.0%
AGATGGAAAACAATACTTAC+TGG	+	chr5_3:19253590-19253609	None:intergenic	30.0%
TGTTACTGTAATGAACACAA+AGG	+	chr5_3:19253665-19253684	None:intergenic	30.0%
CTAACACTGTCAACAATTTA+GGG	+	chr5_3:19254014-19254033	None:intergenic	30.0%
TCTAACACTGTCAACAATTT+AGG	+	chr5_3:19254015-19254034	None:intergenic	30.0%
TAATTAGTTGTGAGACTGTT+TGG	-	chr5_3:19254205-19254224	Msa0803860:intron	30.0%
AGCTTATGAAAACAACTTCT+AGG	-	chr5_3:19254287-19254306	Msa0803860:CDS	30.0%
AAGATACACCTAAAGACTAT+AGG	+	chr5_3:19254443-19254462	None:intergenic	30.0%
TCAGAGGTTGAAATTGTAAA+AGG	-	chr5_3:19254542-19254561	Msa0803860:intron	30.0%

Showing 1 to 10 of 262 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	19253353	19258040	19253353	ID=Msa0803860;Name=Msa0803860
chr5_3	mRNA	19253353	19258040	19253353	ID=Msa0803860-mRNA-1;Parent=Msa0803860;Name=Msa0803860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=62\|1\|1\|1\|0.8\|0.66\|6\|560\|422
chr5_3	exon	19253353	19254129	19253353	ID=Msa0803860-mRNA-1:exon:7917;Parent=Msa0803860-mRNA-1
chr5_3	exon	19254230	19254417	19254230	ID=Msa0803860-mRNA-1:exon:7916;Parent=Msa0803860-mRNA-1
chr5_3	exon	19255786	19256030	19255786	ID=Msa0803860-mRNA-1:exon:7915;Parent=Msa0803860-mRNA-1
chr5_3	exon	19256108	19256273	19256108	ID=Msa0803860-mRNA-1:exon:7914;Parent=Msa0803860-mRNA-1
chr5_3	exon	19256618	19256895	19256618	ID=Msa0803860-mRNA-1:exon:7913;Parent=Msa0803860-mRNA-1
chr5_3	exon	19257804	19258040	19257804	ID=Msa0803860-mRNA-1:exon:7912;Parent=Msa0803860-mRNA-1
chr5_3	five_prime_UTR	19257979	19258040	19257979	ID=Msa0803860-mRNA-1:five_prime_utr;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19257804	19257978	19257804	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19256618	19256895	19256618	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19256108	19256273	19256108	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19255786	19256030	19255786	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19254230	19254417	19254230	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	CDS	19253913	19254129	19253913	ID=Msa0803860-mRNA-1:cds;Parent=Msa0803860-mRNA-1
chr5_3	three_prime_UTR	19253353	19253912	19253353	ID=Msa0803860-mRNA-1:three_prime_utr;Parent=Msa0803860-mRNA-1

Gene Sequence

>Msa0803860

ATGAAGAGCTTCAAAACATGCACTTCAACCTTAAACATCACCACCACCTTCTTCCCTTTCAATGATAATAATCTCTGCACCACCAACTTTCTCACTCCTTCCTTTCAAAACCAAAAACCAAAACTTATAACTCAGAATTTCAAACCCCATTTTCTTCTATGCGCTTCTTTTCCCAGTCCACAAGCTAGTAGTGCTTCCATGACTCAAGTCGAGGAGCAATCAGAGGTTGAAATTGTAAAAGGTTACACTATGACTCAATTTTGTGACAAAATGATAGATTTATTTCTGAATGAGAAAACCAAATCAAAGGACTGGAGGAAATACTTGGTATTTAGGGACGAATGGAAGAAATATAGGAATAGCTTCTTCATTAGATGCCAAAGAAGAGCTGACATGGAGAATGATCCAACAATGAAGGAAAAATTTACTTCATTGGGGAGAAGGGTGAAGAAGATTGATGATGAAATGGAAGGACACTATGAACTTCTCAAGGAGATACAAGATTTTCCGACCGACATTAATGCCATAGTTGCACGAAGGCGCAAAGATTTCACAGGAGAATTTTTCCGCTACCTCTCTCTTATTGCAGACACTTACGACAGCCTGGATGATCGTGATGGGATCGCCAGGCTAGGAGCTAAATGCTTATCTGCCGTCGGTGCATACGATAATACTCTGATGAATATGGAGACGTTAGATGCTGCACAGGCCAAATTTGATGATATCCTTAATTCTCCTTCCATCGATGTAGCTTGTAAGAAAATCAAAAGCCTTGCAAAAGCAAAGGAACTTGATTCTTCATTGATATTGTTGATAAGCGGTGCTTGGGCTAAAGCAAAAGAATCTACAACAATGAAGAATGAGGTGAAAGAGATAATGTACCAATTGTACAAGACCACAAAGAGCAGCCTAAGGACTATTGCCCCAAAAGAAATAAAGCTACTGAAGCATTTGCTAAACATCATAGACCCCGAGGAGCGATTCTCTGCCTTGGCAACAGCTTTCTCCCCTGGTGATGAACATGAAGCCAAAGATCCTAATGCTTTATACACTACGCCAAAGGAACTGCATAAATGGATTCAGATCATGCTAGATGCATATAATCTGAACAAGGAAGAATCAGATTTGAGAGAAGCTAGGCAAATGACTGATCCTATAGTTATTCAGAGGTTGTTTATCCTCAAGGATACTATTGAGAAGGAATATATGGAAAACAACACTGTTCCAAAGTCTGAGACTGAAGATGACTCTCAATCAGAAGTGTTTTAA

Protein sequence

>Msa0803860

MKSFKTCTSTLNITTTFFPFNDNNLCTTNFLTPSFQNQKPKLITQNFKPHFLLCASFPSPQASSASMTQVEEQSEVEIVKGYTMTQFCDKMIDLFLNEKTKSKDWRKYLVFRDEWKKYRNSFFIRCQRRADMENDPTMKEKFTSLGRRVKKIDDEMEGHYELLKEIQDFPTDINAIVARRRKDFTGEFFRYLSLIADTYDSLDDRDGIARLGAKCLSAVGAYDNTLMNMETLDAAQAKFDDILNSPSIDVACKKIKSLAKAKELDSSLILLISGAWAKAKESTTMKNEVKEIMYQLYKTTKSSLRTIAPKEIKLLKHLLNIIDPEERFSALATAFSPGDEHEAKDPNALYTTPKELHKWIQIMLDAYNLNKEESDLREARQMTDPIVIQRLFILKDTIEKEYMENNTVPKSETEDDSQSEVF*