AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721870 MtrunA17_Chr5g0413131 97.414 464 11 1 1 464 1 463 0.0 941
Msa0721870 MtrunA17_Chr4g0058771 67.763 456 132 5 23 464 27 481 0.0 634
Msa0721870 MtrunA17_Chr8g0368161 69.845 451 114 7 16 464 18 448 0.0 625
Msa0721870 MtrunA17_Chr3g0117271 72.441 381 101 4 86 464 118 496 0.0 594
Msa0721870 MtrunA17_Chr8g0368241 60.952 420 156 5 47 464 1 414 0.0 533
Msa0721870 MtrunA17_Chr2g0314461 64.433 388 133 3 77 464 24 406 0.0 524
Msa0721870 MtrunA17_Chr2g0314451 59.756 410 157 4 58 464 1 405 5.44e-178 504
Msa0721870 MtrunA17_Chr2g0314471 58.981 412 159 6 57 464 1 406 9.16e-175 496
Msa0721870 MtrunA17_Chr7g0274951 54.695 426 168 8 62 463 15 439 6.19e-162 464
Msa0721870 MtrunA17_Chr1g0189961 56.858 401 140 7 97 464 51 451 8.24e-161 462
Msa0721870 MtrunA17_Chr8g0380511 55.083 423 155 9 62 463 7 415 1.29e-158 455
Msa0721870 MtrunA17_Chr2g0309251 55.469 384 148 6 102 464 45 426 5.73e-149 431
Msa0721870 MtrunA17_Chr8g0368291 50.939 426 180 10 47 464 1 405 3.63e-144 418
Msa0721870 MtrunA17_Chr8g0368201 59.561 319 109 6 163 464 5 320 7.11e-130 379
Msa0721870 MtrunA17_Chr8g0368341 54.023 348 142 6 119 464 4 335 9.02e-127 371
Msa0721870 MtrunA17_Chr3g0129891 47.877 424 143 12 45 463 29 379 1.87e-120 357
Msa0721870 MtrunA17_Chr2g0326371 56.075 321 125 7 148 464 52 360 1.76e-116 346
Msa0721870 MtrunA17_Chr8g0368221 58.163 294 87 5 47 340 1 258 2.61e-110 326
Msa0721870 MtrunA17_Chr8g0368181 70.984 193 54 2 273 464 2 193 1.52e-94 283
Msa0721870 MtrunA17_Chr3g0135371 38.186 419 227 10 70 464 25 435 3.84e-88 276
Msa0721870 MtrunA17_Chr6g0453411 39.785 372 195 9 118 464 8 375 8.54e-87 270
Msa0721870 MtrunA17_Chr3g0135381 39.793 387 198 7 102 459 52 432 1.59e-86 273
Msa0721870 MtrunA17_Chr8g0368351 54.475 257 90 8 20 274 17 248 3.36e-85 262
Msa0721870 MtrunA17_Chr8g0368331 44.043 277 122 5 218 464 13 286 9.36e-77 241
Msa0721870 MtrunA17_Chr8g0368361 55.155 194 85 1 273 464 2 195 2.91e-74 231
Msa0721870 MtrunA17_Chr3g0135401 40.308 325 165 7 160 460 27 346 2.29e-71 229
Msa0721870 MtrunA17_Chr1g0151871 39.000 300 169 5 167 464 40 327 1.53e-67 219
Msa0721870 MtrunA17_Chr8g0368281 53.886 193 87 2 273 463 2 194 1.93e-67 214
Msa0721870 MtrunA17_Chr8g0368171 47.186 231 92 7 47 274 1 204 2.73e-58 191
Msa0721870 MtrunA17_Chr8g0368271 58.228 158 60 3 47 203 1 153 9.19e-55 181
Msa0721870 MtrunA17_Chr8g0368231 66.400 125 41 1 341 464 8 132 2.16e-54 178
Msa0721870 MtrunA17_Chr8g0368261 61.417 127 46 3 340 464 4 129 1.46e-47 160
Msa0721870 MtrunA17_Chr3g0138811 30.846 402 235 16 67 460 20 386 6.75e-45 161
Msa0721870 MtrunA17_Chr8g0368321 53.793 145 56 3 61 203 7 142 1.00e-43 151
Msa0721870 MtrunA17_Chr8g0368381 57.522 113 48 0 273 385 2 114 9.04e-43 147
Msa0721870 MtrunA17_Chr3g0135441 36.032 247 126 7 226 464 10 232 1.08e-42 150
Msa0721870 MtrunA17_Chr3g0135431 30.411 365 153 10 62 342 14 361 1.68e-41 152
Msa0721870 MtrunA17_Chr2g0302691 32.022 356 205 13 116 458 37 368 6.42e-39 144
Msa0721870 MtrunA17_Chr8g0339871 39.331 239 130 10 230 458 4 237 1.10e-37 137
Msa0721870 MtrunA17_Chr8g0391201 37.238 239 135 10 229 458 3 235 2.30e-34 129
Msa0721870 MtrunA17_Chr5g0445181 32.283 254 148 9 149 399 65 297 5.38e-30 118
Msa0721870 MtrunA17_Chr8g0353941 37.433 187 108 6 278 460 1 182 2.22e-24 99.8
Msa0721870 MtrunA17_Chr2g0302651 33.641 217 114 9 251 458 1 196 7.23e-23 96.3
Msa0721870 MtrunA17_Chr8g0353971 37.647 170 99 5 293 458 4 170 1.90e-22 94.0
Msa0721870 MtrunA17_Chr3g0135451 35.802 162 74 5 62 203 8 159 2.20e-22 94.7
Msa0721870 MtrunA17_Chr8g0353931 30.601 183 105 6 102 274 33 203 2.71e-19 86.3
Msa0721870 MtrunA17_Chr5g0434771 37.931 145 84 5 299 441 24 164 3.28e-18 82.4
Msa0721870 MtrunA17_Chr8g0353961 39.423 104 58 3 102 201 33 135 3.90e-17 78.6
Msa0721870 MtrunA17_Chr5g0426971 28.037 214 122 7 210 417 26 213 6.87e-17 80.5
Msa0721870 MtrunA17_Chr5g0443801 34.234 111 71 2 228 338 21 129 1.64e-15 74.7
Msa0721870 MtrunA17_Chr8g0368191 46.667 75 37 3 60 133 5 77 2.43e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721870 AT1G70550.1 79.003 381 78 2 85 464 86 465 0.0 651
Msa0721870 AT1G23340.2 75.186 403 97 3 64 464 8 409 0.0 648
Msa0721870 AT1G23340.1 75.186 403 97 3 64 464 8 409 0.0 648
Msa0721870 AT1G10750.1 78.100 379 81 2 87 464 90 467 0.0 639
Msa0721870 AT5G50150.1 74.801 377 94 1 89 464 44 420 0.0 604
Msa0721870 AT5G18460.1 56.892 399 150 8 86 463 32 429 1.59e-159 458
Msa0721870 AT3G13510.1 57.368 380 144 6 102 464 41 419 4.93e-157 452
Msa0721870 AT1G55360.1 53.555 422 167 7 61 464 12 422 1.06e-156 451
Msa0721870 AT5G56530.2 55.937 379 149 6 102 463 42 419 3.35e-151 437
Msa0721870 AT5G56530.1 55.937 379 149 6 102 463 42 419 3.35e-151 437
Msa0721870 AT1G23340.3 71.583 278 77 2 64 340 8 284 1.56e-147 423
Msa0721870 AT2G44210.1 53.525 383 157 5 102 464 34 415 1.41e-145 422
Msa0721870 AT2G44210.2 49.879 413 156 6 102 464 34 445 9.85e-140 409
Msa0721870 AT2G44220.1 48.049 410 197 9 64 464 1 403 4.16e-130 382
Msa0721870 AT2G44240.1 49.730 370 177 5 102 464 35 402 7.40e-122 361
Msa0721870 AT1G70550.2 74.879 207 51 1 85 291 86 291 7.95e-114 337
Msa0721870 AT2G17750.1 45.430 372 187 11 102 463 30 395 1.07e-111 335
Msa0721870 AT3G48230.1 47.568 370 186 8 101 464 6 373 3.41e-111 333
Msa0721870 AT2G19360.1 45.408 392 183 8 102 463 35 425 8.87e-109 329
Msa0721870 AT2G44250.1 48.011 377 175 9 102 463 38 408 1.15e-106 323
Msa0721870 AT5G19170.1 43.850 374 191 9 94 458 2 365 5.78e-99 302
Msa0721870 AT1G10750.2 61.778 225 84 2 87 310 90 313 3.53e-95 291
Msa0721870 AT2G44250.2 47.095 327 155 8 152 463 2 325 1.96e-86 268
Msa0721870 AT5G25950.1 36.054 441 234 10 53 464 11 432 1.75e-78 251
Msa0721870 AT2G20170.1 37.745 408 222 15 64 458 8 396 3.19e-75 241
Msa0721870 AT2G20170.2 37.745 408 222 15 64 458 8 396 3.19e-75 241
Msa0721870 AT5G25960.1 37.366 372 185 7 102 464 25 357 6.53e-69 224
Msa0721870 AT2G20170.3 35.539 408 214 15 64 458 8 379 2.04e-66 218
Msa0721870 AT4G23370.1 35.509 383 224 13 91 458 27 401 2.11e-66 219
Msa0721870 AT4G23390.1 36.612 366 210 14 106 458 41 397 6.71e-62 207
Msa0721870 AT4G23380.1 33.158 380 228 12 92 458 32 398 2.45e-61 205
Msa0721870 AT4G23350.1 33.512 373 225 11 100 458 37 400 6.25e-61 204
Msa0721870 AT4G23365.1 31.880 367 233 10 102 458 39 398 1.84e-58 198
Msa0721870 AT4G23355.1 33.420 386 234 13 86 458 23 398 1.69e-57 195
Msa0721870 AT4G23360.1 32.976 373 226 12 100 458 37 399 5.88e-57 194
Msa0721870 AT2G35250.1 34.286 350 184 11 123 460 24 339 1.22e-48 170
Msa0721870 AT4G15050.1 32.368 380 211 17 102 458 38 394 1.36e-44 160
Msa0721870 AT1G10190.1 31.719 413 232 18 70 458 8 394 5.46e-44 159
Msa0721870 AT4G17505.1 30.226 354 194 12 114 464 18 321 1.18e-41 151
Msa0721870 AT2G27320.1 32.523 329 187 10 106 430 15 312 2.16e-39 145
Msa0721870 AT4G15053.1 29.469 414 243 18 70 458 12 401 4.30e-39 146
Msa0721870 AT5G46810.1 28.652 356 214 11 126 458 11 349 7.64e-37 139
Msa0721870 AT5G46820.1 28.611 360 219 11 117 458 8 347 2.86e-36 137
Msa0721870 AT2G24950.1 29.111 371 232 14 102 458 56 409 2.68e-35 136
Msa0721870 AT5G25410.1 27.528 356 231 13 110 458 28 363 2.93e-33 129
Msa0721870 AT4G23373.1 34.703 219 114 7 100 314 34 227 3.13e-33 128
Msa0721870 AT4G10220.1 28.900 391 226 18 89 458 39 398 5.76e-32 126
Msa0721870 AT5G60380.1 28.571 343 216 14 126 458 44 367 1.69e-30 122
Msa0721870 AT5G05030.1 28.460 383 236 15 89 460 4 359 2.39e-30 121
Msa0721870 AT5G46200.1 27.154 383 221 14 126 458 31 405 4.09e-30 121
Msa0721870 AT4G17860.1 30.114 352 198 15 126 458 29 351 1.42e-29 119
Msa0721870 AT4G23080.1 29.353 402 220 21 89 460 39 406 4.05e-29 118
Msa0721870 AT4G10210.1 27.525 396 233 17 47 421 1 363 1.89e-27 113
Msa0721870 AT2G38255.1 33.333 204 115 5 126 329 14 196 1.96e-27 109
Msa0721870 AT5G11660.1 28.522 291 190 8 176 460 26 304 8.63e-24 101
Msa0721870 AT2G03930.2 47.573 103 50 3 217 317 42 142 5.25e-23 95.9
Msa0721870 AT5G25415.1 30.894 246 144 9 229 460 99 332 2.55e-22 98.2
Msa0721870 AT5G36680.1 28.239 301 184 12 175 463 51 331 7.14e-22 96.7
Msa0721870 AT5G36770.1 28.239 301 184 12 175 463 51 331 7.14e-22 96.7
Msa0721870 AT5G04937.1 31.122 196 109 7 270 458 22 198 8.35e-16 76.6
Msa0721870 AT5G37520.1 29.437 231 123 13 235 459 2 198 9.21e-13 67.4

Find 139 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAAATGTGGGTCATTTC+TGG 0.097699 5_1:-18874922 Msa0721870:CDS
CTTTGGTTTAAAAGTGTTAT+TGG 0.175466 5_1:+18876507 None:intergenic
ACCCTAGATTCTTTACTTAT+TGG 0.178065 5_1:-18874598 Msa0721870:CDS
GGAAATTGGTGGCTTGAATT+TGG 0.193828 5_1:-18873199 Msa0721870:CDS
TGATACCCTTGTCAAATCTA+AGG 0.217147 5_1:-18872967 Msa0721870:CDS
TTTGATCATCCTATGTTAAA+AGG 0.226362 5_1:-18876236 Msa0721870:CDS
TTGGAAAAGCATCATACTTT+AGG 0.235413 5_1:-18873021 Msa0721870:CDS
TGCTACAATTTATTGTGTTC+TGG 0.247960 5_1:-18874396 Msa0721870:CDS
CCTTGTATGTCATAGCAATT+TGG 0.252357 5_1:+18872929 None:intergenic
AGCCACCAATTTCCATGCTT+TGG 0.286320 5_1:+18873208 None:intergenic
TGTTCCGTTGTTCTTCTGAT+TGG 0.289858 5_1:+18875979 None:intergenic
TTGATATTAGCTTGCTCATT+TGG 0.296514 5_1:-18874299 Msa0721870:CDS
TCTCCAACTTCTTCATATAC+TGG 0.302096 5_1:-18874330 Msa0721870:CDS
AGGATCCAAAGCATGGAAAT+TGG 0.304845 5_1:-18873213 Msa0721870:CDS
CACTAATCTAGGCATTTATA+AGG 0.305785 5_1:-18877041 Msa0721870:five_prime_UTR
GAAGGGCATTCAAGGTGCTT+GGG 0.313719 5_1:-18872754 Msa0721870:three_prime_UTR
CAAAACCTTCTCCAGCAAAA+TGG 0.320633 5_1:+18873041 None:intergenic
TTAAAAGTGTTATTGGCAAC+AGG 0.326767 5_1:+18876514 None:intergenic
TGAATTTGGGTCCGGAATAT+TGG 0.327218 5_1:-18873185 Msa0721870:CDS
ACCTGAATTGTCTTAATAGA+AGG 0.330187 5_1:+18876430 None:intergenic
AAGGAGGAATAAATAATGTT+TGG 0.330732 5_1:-18872910 Msa0721870:CDS
AGGAGGAATAAATAATGTTT+GGG 0.337415 5_1:-18872909 Msa0721870:CDS
TGGGTCATTTCTGGTTCATT+TGG 0.337735 5_1:-18874913 Msa0721870:CDS
GGACATTTCACATTTCTTCC+TGG 0.340362 5_1:+18872863 None:intergenic
CCTTGCCACAATCAAAATCT+AGG 0.342060 5_1:-18876754 Msa0721870:CDS
AGTTTGAACAATTCTTCCTT+TGG 0.342698 5_1:+18876490 None:intergenic
CATGCAAGTATGGTACAATT+TGG 0.342749 5_1:-18873121 Msa0721870:CDS
TATATTCTATAGTATAGTTT+TGG 0.344805 5_1:-18876792 Msa0721870:five_prime_UTR
CTGATTGGAATTGTTCCTTC+CGG 0.346847 5_1:+18875994 None:intergenic
CAGGTCAGCCCTGAGCTCTA+TGG 0.355105 5_1:-18874629 Msa0721870:CDS
GCTAGTTCTATCAATACATT+TGG 0.356680 5_1:-18875943 Msa0721870:CDS
AACCAGAAATGACCCACATT+TGG 0.359453 5_1:+18874920 None:intergenic
GAAATTGGTGGCTTGAATTT+GGG 0.362311 5_1:-18873198 Msa0721870:CDS
ACCTTCTATTAAGACAATTC+AGG 0.364032 5_1:-18876431 Msa0721870:intron
CTTAAGGGATCATGCAAGTA+TGG 0.364508 5_1:-18873131 Msa0721870:CDS
ACCTTGAATGCCCTTCAAAA+AGG 0.366393 5_1:+18872761 None:intergenic
TGAGCAAGCTAATATCAAAT+TGG 0.367290 5_1:+18874304 None:intergenic
TGAAGGGCATTCAAGGTGCT+TGG 0.368886 5_1:-18872755 Msa0721870:three_prime_UTR
GTCCAATAAGTAAAGAATCT+AGG 0.379605 5_1:+18874596 None:intergenic
GTGACTGGAAATCAATACTA+TGG 0.379746 5_1:-18875006 Msa0721870:CDS
GGCCTAAAACTCATAACAAC+AGG 0.385123 5_1:-18876068 Msa0721870:CDS
CACGATTTCATCACTAATCT+AGG 0.386465 5_1:-18877052 Msa0721870:five_prime_UTR
CAACGGAACAAGACATGTTA+AGG 0.387654 5_1:-18875966 Msa0721870:CDS
TGTACAAGATTGTAAATGAT+TGG 0.389335 5_1:+18876598 None:intergenic
GAATTTGCAAGTTGTGGATT+GGG 0.390025 5_1:-18872999 Msa0721870:CDS
TCATGTACATTAAATAATCT+TGG 0.390780 5_1:-18877176 None:intergenic
GTCACACACTTCAACTCAAA+TGG 0.392629 5_1:-18873071 Msa0721870:CDS
ACTAACAATAAAATTGCTAT+TGG 0.404074 5_1:-18874363 Msa0721870:CDS
TTTCAGTCATGGAGCTTGTC+GGG 0.407788 5_1:-18876027 Msa0721870:CDS
AGGTCAGCCCTGAGCTCTAT+GGG 0.413270 5_1:-18874628 Msa0721870:CDS
GGAATTTGCAAGTTGTGGAT+TGG 0.413386 5_1:-18873000 Msa0721870:CDS
TTAAAATACATGAAAGGGTT+GGG 0.417328 5_1:+18876985 None:intergenic
AACTTGAGCTCTCAGGAGTT+GGG 0.421788 5_1:+18876955 None:intergenic
CTCCAACTTCTTCATATACT+GGG 0.426503 5_1:-18874329 Msa0721870:CDS
CACCATTGAAGCTGGTTGGC+AGG 0.426848 5_1:-18874878 Msa0721870:intron
CCAGTACCCTACCAATATTC+CGG 0.428538 5_1:+18873174 None:intergenic
ACCAGAAATGACCCACATTT+GGG 0.434022 5_1:+18874921 None:intergenic
GAGTCAAAACTTGTAAAACT+TGG 0.437303 5_1:+18876918 None:intergenic
CAACTTGAGCTCTCAGGAGT+TGG 0.447058 5_1:+18876954 None:intergenic
AGTGATGCATATCAAGCAAC+TGG 0.451463 5_1:-18874420 Msa0721870:CDS
TGGTGGCTTGAATTTGGGTC+CGG 0.451727 5_1:-18873193 Msa0721870:CDS
CTTTAGGAATTTGCAAGTTG+TGG 0.454834 5_1:-18873005 Msa0721870:CDS
TGCCTGCCAACCAGCTTCAA+TGG 0.456829 5_1:+18874876 None:intergenic
TGCAGTAATGGTATAATCAA+TGG 0.458539 5_1:+18872656 None:intergenic
ATTAAAATACATGAAAGGGT+TGG 0.461693 5_1:+18876984 None:intergenic
AAATATATGTTGAATTTCAA+AGG 0.465479 5_1:+18877138 None:intergenic
TAACTGTCCCCATAGAGCTC+AGG 0.469376 5_1:+18874620 None:intergenic
AAGAACAAATCCTAATCAAA+AGG 0.479596 5_1:+18872701 None:intergenic
TCCAATAAGTAAAGAATCTA+GGG 0.480244 5_1:+18874597 None:intergenic
AACATAGGATGATCAAAAGC+TGG 0.480414 5_1:+18876242 None:intergenic
GATGATTAAAATACATGAAA+GGG 0.482433 5_1:+18876980 None:intergenic
CCGGAATATTGGTAGGGTAC+TGG 0.498895 5_1:-18873174 Msa0721870:CDS
ACTAATCTAGGCATTTATAA+GGG 0.499819 5_1:-18877040 Msa0721870:five_prime_UTR
TGGGGCCCACACGTTTATGC+TGG 0.504864 5_1:+18874975 None:intergenic
TATTAGCTTGCTCATTTGGA+AGG 0.505252 5_1:-18874295 Msa0721870:intron
GGATGATTAAAATACATGAA+AGG 0.505297 5_1:+18876979 None:intergenic
GATCTTAACACCATTGAAGC+TGG 0.508448 5_1:-18874886 Msa0721870:CDS
AATTTATAGGAGTGTGTACA+AGG 0.510075 5_1:+18877086 None:intergenic
GATACCCTTGTCAAATCTAA+GGG 0.511589 5_1:-18872966 Msa0721870:CDS
ATCAATGTGAACTATATCAA+AGG 0.515801 5_1:-18876687 Msa0721870:CDS
TCAATGTGAACTATATCAAA+GGG 0.516228 5_1:-18876686 Msa0721870:CDS
AGTCAAAACTTGTAAAACTT+GGG 0.516771 5_1:+18876919 None:intergenic
AAAAGGAAAATTCTCAAGCA+TGG 0.516776 5_1:-18876644 Msa0721870:CDS
TAGGAGTGTGTACAAGGGAA+GGG 0.517712 5_1:+18877092 None:intergenic
TACTGACAACTTGAGCTCTC+AGG 0.522962 5_1:+18876948 None:intergenic
AACGGAACAAGACATGTTAA+GGG 0.533255 5_1:-18875965 Msa0721870:CDS
CATAAGAGTCCATGCAGTAA+TGG 0.534353 5_1:+18872644 None:intergenic
TCACACACTTCAACTCAAAT+GGG 0.534918 5_1:-18873070 Msa0721870:CDS
AGAAATGTGAAATGTCCCTA+AGG 0.537968 5_1:-18872857 Msa0721870:exon
AAGGGCATTCAAGGTGCTTG+GGG 0.539760 5_1:-18872753 Msa0721870:three_prime_UTR
AATTCAGCTTGTCCCAAATG+TGG 0.546123 5_1:-18874933 Msa0721870:CDS
GCAAGTATGGTACAATTTGG+TGG 0.547559 5_1:-18873118 Msa0721870:CDS
AATTATATACTATGCTTCCA+AGG 0.549037 5_1:-18876869 Msa0721870:five_prime_UTR
TTTGGGTCCGGAATATTGGT+AGG 0.551957 5_1:-18873181 Msa0721870:CDS
CCAAATTGCTATGACATACA+AGG 0.552229 5_1:-18872929 Msa0721870:CDS
TAGATTCTTTACTTATTGGA+CGG 0.552867 5_1:-18874594 Msa0721870:intron
AACTGTCCCCATAGAGCTCA+GGG 0.555050 5_1:+18874621 None:intergenic
ATAGGAGTGTGTACAAGGGA+AGG 0.556665 5_1:+18877091 None:intergenic
ATTGTTGTACAGCATGCAGT+TGG 0.557575 5_1:-18875033 Msa0721870:intron
CTTGTCGGGTGAATCATGTC+CGG 0.562105 5_1:-18876013 Msa0721870:CDS
CATTCTATGATATCACCGTC+AGG 0.565456 5_1:+18876284 None:intergenic
TTAACACCATTGAAGCTGGT+TGG 0.566931 5_1:-18874882 Msa0721870:CDS
TCCAACTTCTTCATATACTG+GGG 0.571043 5_1:-18874328 Msa0721870:CDS
TATAAGGGCTCCAACCCACA+TGG 0.577082 5_1:-18877025 Msa0721870:five_prime_UTR
CATGCAGTTGGATATGTGAC+TGG 0.584752 5_1:-18875021 Msa0721870:CDS
ATCCAAAGCATGGAAATTGG+TGG 0.585312 5_1:-18873210 Msa0721870:CDS
GGAGGAATAAATAATGTTTG+GGG 0.587413 5_1:-18872908 Msa0721870:CDS
CACAAATAGCAATGGACATG+AGG 0.590650 5_1:-18875890 Msa0721870:intron
TCATATTGATTTGCAACACG+TGG 0.591437 5_1:+18874955 None:intergenic
GTGTGCAGGATCCTCCAGAA+AGG 0.596318 5_1:-18876089 Msa0721870:intron
AGGAGTGTGTACAAGGGAAG+GGG 0.599342 5_1:+18877093 None:intergenic
TTGATTATACCATTACTGCA+TGG 0.602877 5_1:-18872653 Msa0721870:three_prime_UTR
CAAAGGCCAGCATAAACGTG+TGG 0.603420 5_1:-18874981 Msa0721870:CDS
CATATTGATTTGCAACACGT+GGG 0.606872 5_1:+18874956 None:intergenic
GAAATGTGAAATGTCCCTAA+GGG 0.609542 5_1:-18872856 Msa0721870:exon
TAAAAGTGTTATTGGCAACA+GGG 0.614146 5_1:+18876515 None:intergenic
TTGGGTCCGGAATATTGGTA+GGG 0.616627 5_1:-18873180 Msa0721870:CDS
TTGAGCTCTCAGGAGTTGGG+TGG 0.617510 5_1:+18876958 None:intergenic
TAGAACCCTTAGATTTGACA+AGG 0.625722 5_1:+18872961 None:intergenic
ACTTCAACTCAAATGGGTAG+TGG 0.626407 5_1:-18873064 Msa0721870:CDS
AAAGGCCAGCATAAACGTGT+GGG 0.627144 5_1:-18874980 Msa0721870:CDS
AGAAGAGACACAAATAGCAA+TGG 0.629086 5_1:-18875898 Msa0721870:CDS
ATTCAGCTTGTCCCAAATGT+GGG 0.629178 5_1:-18874932 Msa0721870:CDS
GTTAAAAGGACAAAGACCAC+TGG 0.629673 5_1:-18876222 Msa0721870:intron
TCGGGTGAATCATGTCCGGA+AGG 0.643411 5_1:-18876009 Msa0721870:CDS
GTCAAATCTAAGGGTTCTAG+CGG 0.646768 5_1:-18872957 Msa0721870:CDS
ATTTATAGGAGTGTGTACAA+GGG 0.650243 5_1:+18877087 None:intergenic
AAATCAATACTATGGAGCAA+AGG 0.652318 5_1:-18874998 Msa0721870:CDS
ATATTGATTTGCAACACGTG+GGG 0.658886 5_1:+18874957 None:intergenic
GAAATTGTGAATTCAAGACA+AGG 0.660538 5_1:-18873094 Msa0721870:CDS
ATAAGGGCTCCAACCCACAT+GGG 0.662992 5_1:-18877024 Msa0721870:five_prime_UTR
GAGGAATAAATAATGTTTGG+GGG 0.669410 5_1:-18872907 Msa0721870:CDS
AATTCCAATCAGAAGAACAA+CGG 0.674959 5_1:-18875983 Msa0721870:CDS
CCAACTTCTTCATATACTGG+GGG 0.674996 5_1:-18874327 Msa0721870:CDS
GCCTAAAACTCATAACAACA+GGG 0.692904 5_1:-18876067 Msa0721870:CDS
GGTCAGCCCTGAGCTCTATG+GGG 0.696304 5_1:-18874627 Msa0721870:CDS
AGAACCCTTAGATTTGACAA+GGG 0.704158 5_1:+18872962 None:intergenic
AAATTGTGAATTCAAGACAA+GGG 0.714404 5_1:-18873093 Msa0721870:CDS
AATTGCTATGACATACAAGG+AGG 0.724912 5_1:-18872926 Msa0721870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAAAATAAAAT+TGG + chr5_1:18875601-18875620 None:intergenic 0.0%
!!! ATCATTTTGAATATAATTTA+AGG + chr5_1:18874393-18874412 None:intergenic 10.0%
!!! TGTTTTTTTTTTTTGAATAA+AGG + chr5_1:18875531-18875550 None:intergenic 10.0%
!!! TTGTTTTACTATTTTATTTT+AGG - chr5_1:18876534-18876553 Msa0721870:CDS 10.0%
!!! TTTTTTTTTCTTTTTCTTTT+TGG - chr5_1:18876954-18876973 Msa0721870:five_prime_UTR 10.0%
!! AAATATATGTTGAATTTCAA+AGG + chr5_1:18872632-18872651 None:intergenic 15.0%
!! TGCTAAGTTTAAAAATTTAT+AGG + chr5_1:18872697-18872716 None:intergenic 15.0%
!!! TATATTCTATAGTATAGTTT+TGG - chr5_1:18872975-18872994 Msa0721870:CDS 15.0%
!! TATGTATAAGTTAAGATATA+AGG - chr5_1:18873610-18873629 Msa0721870:intron 15.0%
!! ATGTATAAGTTAAGATATAA+GGG - chr5_1:18873611-18873630 Msa0721870:intron 15.0%
!!! TATTTCAAGTTTGATTTTTT+TGG + chr5_1:18874307-18874326 None:intergenic 15.0%
!!! AGTATTTTGAATATAATCTA+AGG + chr5_1:18874536-18874555 None:intergenic 15.0%
!! TATACATCAATAAAAATTTG+AGG + chr5_1:18874659-18874678 None:intergenic 15.0%
!! AGATACAAAAATTAAAAACA+TGG + chr5_1:18875085-18875104 None:intergenic 15.0%
!! TATAAAACTCAATAAAGAAA+AGG - chr5_1:18875200-18875219 Msa0721870:intron 15.0%
!! ATAAAACTCAATAAAGAAAA+GGG - chr5_1:18875201-18875220 Msa0721870:intron 15.0%
!!! AAATAGTCAATAATTTTCTA+AGG + chr5_1:18875565-18875584 None:intergenic 15.0%
!!! AATTTAGTTTTACTATTGAT+TGG - chr5_1:18875629-18875648 Msa0721870:intron 15.0%
!!! AAATAATTTTTATCTTGGAA+TGG + chr5_1:18876051-18876070 None:intergenic 15.0%
!! TTTATTCACTTTAATACTTT+GGG - chr5_1:18876165-18876184 Msa0721870:intron 15.0%
!! CAAAATACAAAAATAACAAA+AGG - chr5_1:18876495-18876514 Msa0721870:CDS 15.0%
!!! AAATTAAATTCCTTTTGATT+AGG - chr5_1:18877056-18877075 Msa0721870:five_prime_UTR 15.0%
!! GATGATTAAAATACATGAAA+GGG + chr5_1:18872790-18872809 None:intergenic 20.0%
!! AAAAATGAGTATTCTAAGTA+TGG + chr5_1:18872952-18872971 None:intergenic 20.0%
!!! AACAATTTTGTTTTTGTAGA+TGG - chr5_1:18873043-18873062 Msa0721870:CDS 20.0%
!! TCTTCAATAGAAACAAAAAA+AGG - chr5_1:18873106-18873125 Msa0721870:CDS 20.0%
!! AAAAAAACAGAGTAAAAACA+GGG + chr5_1:18873397-18873416 None:intergenic 20.0%
!!! AACAATAAATTTAGAGTAGT+TGG - chr5_1:18874129-18874148 Msa0721870:intron 20.0%
!! TTAGTTAATGTTTCACTTAA+TGG - chr5_1:18874223-18874242 Msa0721870:intron 20.0%
!! AAAAAAATTTAATCTCACCA+AGG - chr5_1:18874365-18874384 Msa0721870:CDS 20.0%
!! GTACAACAATAAAAACTATT+AGG + chr5_1:18874724-18874743 None:intergenic 20.0%
!!! AATCAATTAAGTTGAAGTAA+TGG + chr5_1:18874930-18874949 None:intergenic 20.0%
!!! AAACATGGAGAAAAATTTTA+TGG + chr5_1:18875070-18875089 None:intergenic 20.0%
!! ACTAACAATAAAATTGCTAT+TGG - chr5_1:18875404-18875423 Msa0721870:intron 20.0%
!!! AATATTGATGGATCAAATTA+AGG - chr5_1:18875782-18875801 Msa0721870:intron 20.0%
!!! ATATTGATGGATCAAATTAA+GGG - chr5_1:18875783-18875802 Msa0721870:intron 20.0%
!! AGTAAAAGATTCATATCAAA+GGG + chr5_1:18875840-18875859 None:intergenic 20.0%
!! TAGTAAAAGATTCATATCAA+AGG + chr5_1:18875841-18875860 None:intergenic 20.0%
!!! TTTGATATGAATCTTTTACT+AGG - chr5_1:18875840-18875859 Msa0721870:intron 20.0%
!! AAATGATTAAAAATGCTCAA+TGG - chr5_1:18875932-18875951 Msa0721870:CDS 20.0%
!! TTCTATATCACAAAATTCAA+TGG + chr5_1:18875990-18876009 None:intergenic 20.0%
!!! AGAATATTTAGAAGAAGTAT+AGG - chr5_1:18876006-18876025 Msa0721870:CDS 20.0%
!!! GAATATTTAGAAGAAGTATA+GGG - chr5_1:18876007-18876026 Msa0721870:CDS 20.0%
!!! AATATTTAGAAGAAGTATAG+GGG - chr5_1:18876008-18876027 Msa0721870:CDS 20.0%
!! AAGTATTAAAGTGAATAAAG+TGG + chr5_1:18876164-18876183 None:intergenic 20.0%
!! CTTTATTCACTTTAATACTT+TGG - chr5_1:18876164-18876183 Msa0721870:intron 20.0%
!!! TTTTTCTTTTTGGCATTTTT+AGG - chr5_1:18876964-18876983 Msa0721870:five_prime_UTR 20.0%
! ACTAATCTAGGCATTTATAA+GGG - chr5_1:18872727-18872746 Msa0721870:three_prime_UTR 25.0%
! TTAAAATACATGAAAGGGTT+GGG + chr5_1:18872785-18872804 None:intergenic 25.0%
! ATTAAAATACATGAAAGGGT+TGG + chr5_1:18872786-18872805 None:intergenic 25.0%
! GGATGATTAAAATACATGAA+AGG + chr5_1:18872791-18872810 None:intergenic 25.0%
! AGTCAAAACTTGTAAAACTT+GGG + chr5_1:18872851-18872870 None:intergenic 25.0%
! AATTATATACTATGCTTCCA+AGG - chr5_1:18872898-18872917 Msa0721870:CDS 25.0%
!!! ATTCTATAGTATAGTTTTGG+TGG - chr5_1:18872978-18872997 Msa0721870:CDS 25.0%
! ATCAATGTGAACTATATCAA+AGG - chr5_1:18873080-18873099 Msa0721870:CDS 25.0%
! TCAATGTGAACTATATCAAA+GGG - chr5_1:18873081-18873100 Msa0721870:CDS 25.0%
! TGTACAAGATTGTAAATGAT+TGG + chr5_1:18873172-18873191 None:intergenic 25.0%
!!! ATTTTTGAGGAAGAAAAAAC+AGG + chr5_1:18873223-18873242 None:intergenic 25.0%
!!! CTTTGGTTTAAAAGTGTTAT+TGG + chr5_1:18873263-18873282 None:intergenic 25.0%
!! CAATAACACTTTTAAACCAA+AGG - chr5_1:18873261-18873280 Msa0721870:intron 25.0%
! AAAAAACAGAGTAAAAACAG+GGG + chr5_1:18873396-18873415 None:intergenic 25.0%
! CAAAAAAACAGAGTAAAAAC+AGG + chr5_1:18873398-18873417 None:intergenic 25.0%
! TTTGATCATCCTATGTTAAA+AGG - chr5_1:18873531-18873550 Msa0721870:intron 25.0%
! AAACAAGAACTTCAATTTCT+TGG + chr5_1:18873939-18873958 None:intergenic 25.0%
! TTCTGCAATCACTATAAATA+GGG + chr5_1:18874187-18874206 None:intergenic 25.0%
! ATTCTGCAATCACTATAAAT+AGG + chr5_1:18874188-18874207 None:intergenic 25.0%
!! GAATATAATTTAAGGTTCCT+TGG + chr5_1:18874385-18874404 None:intergenic 25.0%
!! ATATAATCTAAGGCTACTTA+AGG + chr5_1:18874526-18874545 None:intergenic 25.0%
! TAGAATATAAACACATGTGT+CGG + chr5_1:18874624-18874643 None:intergenic 25.0%
! ACTCTTAAATGCACTATATT+TGG - chr5_1:18875006-18875025 Msa0721870:CDS 25.0%
!! ATGGAGAAAAATTTTATGGT+AGG + chr5_1:18875066-18875085 None:intergenic 25.0%
! TCCAATAAGTAAAGAATCTA+GGG + chr5_1:18875173-18875192 None:intergenic 25.0%
! TAGATTCTTTACTTATTGGA+CGG - chr5_1:18875173-18875192 Msa0721870:intron 25.0%
!!! AAGTCTTATAAAACGGATTA+AGG - chr5_1:18875673-18875692 Msa0721870:intron 25.0%
!!! AGTCTTATAAAACGGATTAA+GGG - chr5_1:18875674-18875693 Msa0721870:intron 25.0%
! AATCCAACAACTAATATTGA+TGG - chr5_1:18875770-18875789 Msa0721870:intron 25.0%
! ACAAAAGTCTTCAAATTTCA+TGG - chr5_1:18875866-18875885 Msa0721870:intron 25.0%
! ATTAAAAATGCTCAATGGTA+GGG - chr5_1:18875937-18875956 Msa0721870:CDS 25.0%
! GAAGAGAATCTTAAAAAGAA+AGG + chr5_1:18876249-18876268 None:intergenic 25.0%
! TGATGAACAAAACTACAAAA+GGG + chr5_1:18876312-18876331 None:intergenic 25.0%
! ATGATGAACAAAACTACAAA+AGG + chr5_1:18876313-18876332 None:intergenic 25.0%
!! ATTTTTGTTCACACACTTAA+GGG - chr5_1:18876621-18876640 Msa0721870:CDS 25.0%
! AAATTGTGAATTCAAGACAA+GGG - chr5_1:18876674-18876693 Msa0721870:CDS 25.0%
! AAGGAGGAATAAATAATGTT+TGG - chr5_1:18876857-18876876 Msa0721870:five_prime_UTR 25.0%
! AGGAGGAATAAATAATGTTT+GGG - chr5_1:18876858-18876877 Msa0721870:five_prime_UTR 25.0%
!!! TTTTTGGCATTTTTAGGTTT+GGG - chr5_1:18876970-18876989 Msa0721870:five_prime_UTR 25.0%
! AAGAACAAATCCTAATCAAA+AGG + chr5_1:18877069-18877088 None:intergenic 25.0%
! ATTTATAGGAGTGTGTACAA+GGG + chr5_1:18872683-18872702 None:intergenic 30.0%
! AATTTATAGGAGTGTGTACA+AGG + chr5_1:18872684-18872703 None:intergenic 30.0%
CACTAATCTAGGCATTTATA+AGG - chr5_1:18872726-18872745 Msa0721870:three_prime_UTR 30.0%
GAGTCAAAACTTGTAAAACT+TGG + chr5_1:18872852-18872871 None:intergenic 30.0%
! TTTCACTATTTTCAATGCCT+TGG + chr5_1:18872918-18872937 None:intergenic 30.0%
AAAAGGAAAATTCTCAAGCA+TGG - chr5_1:18873123-18873142 Msa0721870:CDS 30.0%
!! TAAAAGTGTTATTGGCAACA+GGG + chr5_1:18873255-18873274 None:intergenic 30.0%
!! TTAAAAGTGTTATTGGCAAC+AGG + chr5_1:18873256-18873275 None:intergenic 30.0%
AGTTTGAACAATTCTTCCTT+TGG + chr5_1:18873280-18873299 None:intergenic 30.0%
ACCTTCTATTAAGACAATTC+AGG - chr5_1:18873336-18873355 Msa0721870:intron 30.0%
ACCTGAATTGTCTTAATAGA+AGG + chr5_1:18873340-18873359 None:intergenic 30.0%
!!! AATTTTTTTCAGAGTCCTGA+CGG - chr5_1:18873468-18873487 Msa0721870:intron 30.0%
ACTCAATTAGAATTTACCAG+TGG + chr5_1:18873564-18873583 None:intergenic 30.0%
AATTCCAATCAGAAGAACAA+CGG - chr5_1:18873784-18873803 Msa0721870:intron 30.0%
!! GCTAGTTCTATCAATACATT+TGG - chr5_1:18873824-18873843 Msa0721870:intron 30.0%
! TAATGTCCATTTGTCTTGTT+TGG - chr5_1:18874078-18874097 Msa0721870:intron 30.0%
TTCATACCAAACAAGACAAA+TGG + chr5_1:18874087-18874106 None:intergenic 30.0%
GGTATGAAAATGAGTATTCA+TGG - chr5_1:18874099-18874118 Msa0721870:intron 30.0%
ATCACTATAAATAGGGCAAA+AGG + chr5_1:18874180-18874199 None:intergenic 30.0%
ATAGTGATTGCAGAATTTCA+TGG - chr5_1:18874192-18874211 Msa0721870:intron 30.0%
ACTATCACATTATCTTGTGT+AGG - chr5_1:18874271-18874290 Msa0721870:intron 30.0%
CTATCACATTATCTTGTGTA+GGG - chr5_1:18874272-18874291 Msa0721870:intron 30.0%
!!! CCTAAATTTTTTCCTTGCAA+AGG + chr5_1:18874344-18874363 None:intergenic 30.0%
CCTTTGCAAGGAAAAAATTT+AGG - chr5_1:18874341-18874360 Msa0721870:CDS 30.0%
TGTCATACGTGCATATATAT+CGG + chr5_1:18874447-18874466 None:intergenic 30.0%
AAATCAATACTATGGAGCAA+AGG - chr5_1:18874769-18874788 Msa0721870:intron 30.0%
ACCCTAGATTCTTTACTTAT+TGG - chr5_1:18875169-18875188 Msa0721870:intron 30.0%
GTCCAATAAGTAAAGAATCT+AGG + chr5_1:18875174-18875193 None:intergenic 30.0%
TTAACTTACACTTCAAGCAA+AGG + chr5_1:18875266-18875285 None:intergenic 30.0%
CTTGAAGTGTAAGTTAAGAT+AGG - chr5_1:18875269-18875288 Msa0721870:intron 30.0%
TGCTACAATTTATTGTGTTC+TGG - chr5_1:18875371-18875390 Msa0721870:intron 30.0%
TGAGCAAGCTAATATCAAAT+TGG + chr5_1:18875466-18875485 None:intergenic 30.0%
!! TTGATATTAGCTTGCTCATT+TGG - chr5_1:18875468-18875487 Msa0721870:intron 30.0%
! GTCACACAAGTCTTATAAAA+CGG - chr5_1:18875666-18875685 Msa0721870:intron 30.0%
!! TGTTTTGAGCATATACTCTT+TGG - chr5_1:18875743-18875762 Msa0721870:intron 30.0%
GATCCATCAATATTAGTTGT+TGG + chr5_1:18875776-18875795 None:intergenic 30.0%
GATTAAAAATGCTCAATGGT+AGG - chr5_1:18875936-18875955 Msa0721870:CDS 30.0%
! GTTTGTTACTTCCAAAACAA+TGG + chr5_1:18875966-18875985 None:intergenic 30.0%
GTTCATTATTCGAATTCACT+AGG + chr5_1:18876205-18876224 None:intergenic 30.0%
AGAATTAGAAGCTCTTTGTT+GGG + chr5_1:18876278-18876297 None:intergenic 30.0%
!!! TTATTTTAGGATCCAAAGCA+TGG - chr5_1:18876547-18876566 Msa0721870:CDS 30.0%
AAGTGTGTGAACAAAAATGA+TGG + chr5_1:18876619-18876638 None:intergenic 30.0%
! CATTTTTGTTCACACACTTA+AGG - chr5_1:18876620-18876639 Msa0721870:CDS 30.0%
GAAATTGTGAATTCAAGACA+AGG - chr5_1:18876673-18876692 Msa0721870:CDS 30.0%
!! TTGGAAAAGCATCATACTTT+AGG - chr5_1:18876746-18876765 Msa0721870:CDS 30.0%
GGAGGAATAAATAATGTTTG+GGG - chr5_1:18876859-18876878 Msa0721870:five_prime_UTR 30.0%
GAGGAATAAATAATGTTTGG+GGG - chr5_1:18876860-18876879 Msa0721870:five_prime_UTR 30.0%
! TTTTATGCTTCATTCCCTTA+GGG + chr5_1:18876928-18876947 None:intergenic 30.0%
! TTTTTATGCTTCATTCCCTT+AGG + chr5_1:18876929-18876948 None:intergenic 30.0%
!!! CTTTTTGGCATTTTTAGGTT+TGG - chr5_1:18876969-18876988 Msa0721870:five_prime_UTR 30.0%
!!! TTTTTAGGTTTGGGTGATAT+TGG - chr5_1:18876979-18876998 Msa0721870:five_prime_UTR 30.0%
!!! ATATTGGTTCTCCTTTTTGA+AGG - chr5_1:18876995-18877014 Msa0721870:five_prime_UTR 30.0%
!!! TATTGGTTCTCCTTTTTGAA+GGG - chr5_1:18876996-18877015 Msa0721870:five_prime_UTR 30.0%
TGCAGTAATGGTATAATCAA+TGG + chr5_1:18877114-18877133 None:intergenic 30.0%
TTGATTATACCATTACTGCA+TGG - chr5_1:18877114-18877133 Msa0721870:five_prime_UTR 30.0%
CACGATTTCATCACTAATCT+AGG - chr5_1:18872715-18872734 Msa0721870:three_prime_UTR 35.0%
!! TATTCAAGTTTTGCCCATGT+GGG + chr5_1:18872759-18872778 None:intergenic 35.0%
!!! CTAGATTTTGATTGTGGCAA+GGG + chr5_1:18873015-18873034 None:intergenic 35.0%
!!! GTGTTCCTAGATTTTGATTG+TGG + chr5_1:18873021-18873040 None:intergenic 35.0%
AGGAAGAAAAAACAGGACAA+AGG + chr5_1:18873216-18873235 None:intergenic 35.0%
! AGGGTTGTTGTCAATTTTTG+AGG + chr5_1:18873236-18873255 None:intergenic 35.0%
AACATAGGATGATCAAAAGC+TGG + chr5_1:18873528-18873547 None:intergenic 35.0%
! GGTCTTTGTCCTTTTAACAT+AGG + chr5_1:18873543-18873562 None:intergenic 35.0%
! TTATTTTCTTGCATGTGTGC+AGG - chr5_1:18873664-18873683 Msa0721870:intron 35.0%
!!! TTATGAGTTTTAGGCCTTTC+TGG + chr5_1:18873695-18873714 None:intergenic 35.0%
GCCTAAAACTCATAACAACA+GGG - chr5_1:18873700-18873719 Msa0721870:intron 35.0%
! TCCCTGTTGTTATGAGTTTT+AGG + chr5_1:18873704-18873723 None:intergenic 35.0%
AACGGAACAAGACATGTTAA+GGG - chr5_1:18873802-18873821 Msa0721870:intron 35.0%
AGAAGAGACACAAATAGCAA+TGG - chr5_1:18873869-18873888 Msa0721870:intron 35.0%
! TCTGAAGTGTCACTATTGTA+TGG + chr5_1:18874559-18874578 None:intergenic 35.0%
ACCTGACATATATCAGATGT+CGG + chr5_1:18874594-18874613 None:intergenic 35.0%
GTGACTGGAAATCAATACTA+TGG - chr5_1:18874761-18874780 Msa0721870:intron 35.0%
!! ATATTGATTTGCAACACGTG+GGG + chr5_1:18874813-18874832 None:intergenic 35.0%
!! CATATTGATTTGCAACACGT+GGG + chr5_1:18874814-18874833 None:intergenic 35.0%
!! TCATATTGATTTGCAACACG+TGG + chr5_1:18874815-18874834 None:intergenic 35.0%
TCTCCAACTTCTTCATATAC+TGG - chr5_1:18875437-18875456 Msa0721870:intron 35.0%
CTCCAACTTCTTCATATACT+GGG - chr5_1:18875438-18875457 Msa0721870:intron 35.0%
TCCAACTTCTTCATATACTG+GGG - chr5_1:18875439-18875458 Msa0721870:intron 35.0%
!! TATTAGCTTGCTCATTTGGA+AGG - chr5_1:18875472-18875491 Msa0721870:intron 35.0%
TTGAGCATATACTCTTTGGT+TGG - chr5_1:18875747-18875766 Msa0721870:intron 35.0%
CAATCTTCTATCCTTTAGGT+GGG + chr5_1:18875810-18875829 None:intergenic 35.0%
TCAATCTTCTATCCTTTAGG+TGG + chr5_1:18875811-18875830 None:intergenic 35.0%
GGATCAATCTTCTATCCTTT+AGG + chr5_1:18875814-18875833 None:intergenic 35.0%
AAGATTCATATCAAAGGGCA+GGG + chr5_1:18875835-18875854 None:intergenic 35.0%
AAAGATTCATATCAAAGGGC+AGG + chr5_1:18875836-18875855 None:intergenic 35.0%
TTCATGGTCAAAAGCTTCAA+AGG - chr5_1:18875882-18875901 Msa0721870:intron 35.0%
CAGAATTAGAAGCTCTTTGT+TGG + chr5_1:18876279-18876298 None:intergenic 35.0%
CAACAAAGAGCTTCTAATTC+TGG - chr5_1:18876277-18876296 Msa0721870:CDS 35.0%
AAAAGGAGGAGTAAGAAAAG+TGG + chr5_1:18876393-18876412 None:intergenic 35.0%
TGAATAGCATCATGTTAGCT+TGG + chr5_1:18876435-18876454 None:intergenic 35.0%
! GAAATTGGTGGCTTGAATTT+GGG - chr5_1:18876569-18876588 Msa0721870:CDS 35.0%
CATGCAAGTATGGTACAATT+TGG - chr5_1:18876646-18876665 Msa0721870:CDS 35.0%
TCACACACTTCAACTCAAAT+GGG - chr5_1:18876697-18876716 Msa0721870:CDS 35.0%
! CTTTAGGAATTTGCAAGTTG+TGG - chr5_1:18876762-18876781 Msa0721870:CDS 35.0%
GAATTTGCAAGTTGTGGATT+GGG - chr5_1:18876768-18876787 Msa0721870:exon 35.0%
TGATACCCTTGTCAAATCTA+AGG - chr5_1:18876800-18876819 Msa0721870:five_prime_UTR 35.0%
GATACCCTTGTCAAATCTAA+GGG - chr5_1:18876801-18876820 Msa0721870:five_prime_UTR 35.0%
AGAACCCTTAGATTTGACAA+GGG + chr5_1:18876808-18876827 None:intergenic 35.0%
TAGAACCCTTAGATTTGACA+AGG + chr5_1:18876809-18876828 None:intergenic 35.0%
CCTTGTATGTCATAGCAATT+TGG + chr5_1:18876841-18876860 None:intergenic 35.0%
CCAAATTGCTATGACATACA+AGG - chr5_1:18876838-18876857 Msa0721870:five_prime_UTR 35.0%
AATTGCTATGACATACAAGG+AGG - chr5_1:18876841-18876860 Msa0721870:five_prime_UTR 35.0%
!! TGGGGGAATTACTTTTACTA+TGG - chr5_1:18876877-18876896 Msa0721870:five_prime_UTR 35.0%
!! GGGAATTACTTTTACTATGG+TGG - chr5_1:18876880-18876899 Msa0721870:five_prime_UTR 35.0%
AGAAATGTGAAATGTCCCTA+AGG - chr5_1:18876910-18876929 Msa0721870:five_prime_UTR 35.0%
GAAATGTGAAATGTCCCTAA+GGG - chr5_1:18876911-18876930 Msa0721870:five_prime_UTR 35.0%
!! GTATTCAAGTTTTGCCCATG+TGG + chr5_1:18872760-18872779 None:intergenic 40.0%
!!! CCTAGATTTTGATTGTGGCA+AGG + chr5_1:18873016-18873035 None:intergenic 40.0%
CCTTGCCACAATCAAAATCT+AGG - chr5_1:18873013-18873032 Msa0721870:CDS 40.0%
CATTCTATGATATCACCGTC+AGG + chr5_1:18873486-18873505 None:intergenic 40.0%
GTTAAAAGGACAAAGACCAC+TGG - chr5_1:18873545-18873564 Msa0721870:intron 40.0%
GGCCTAAAACTCATAACAAC+AGG - chr5_1:18873699-18873718 Msa0721870:intron 40.0%
! TTTTCAGTCATGGAGCTTGT+CGG - chr5_1:18873739-18873758 Msa0721870:intron 40.0%
CTGATTGGAATTGTTCCTTC+CGG + chr5_1:18873776-18873795 None:intergenic 40.0%
TGTTCCGTTGTTCTTCTGAT+TGG + chr5_1:18873791-18873810 None:intergenic 40.0%
CAACGGAACAAGACATGTTA+AGG - chr5_1:18873801-18873820 Msa0721870:intron 40.0%
CACAAATAGCAATGGACATG+AGG - chr5_1:18873877-18873896 Msa0721870:intron 40.0%
! TTTTTCCTTGCAAAGGCTCA+TGG + chr5_1:18874337-18874356 None:intergenic 40.0%
TGATCACTGACACTTCAGAT+AGG - chr5_1:18874409-18874428 Msa0721870:CDS 40.0%
ATAGTGACACTTCAGAGTGA+AGG - chr5_1:18874563-18874582 Msa0721870:intron 40.0%
ACCGACATCTGATATATGTC+AGG - chr5_1:18874590-18874609 Msa0721870:intron 40.0%
ATTGTTGTACAGCATGCAGT+TGG - chr5_1:18874734-18874753 Msa0721870:intron 40.0%
AATTCAGCTTGTCCCAAATG+TGG - chr5_1:18874834-18874853 Msa0721870:intron 40.0%
ATTCAGCTTGTCCCAAATGT+GGG - chr5_1:18874835-18874854 Msa0721870:intron 40.0%
ACCAGAAATGACCCACATTT+GGG + chr5_1:18874849-18874868 None:intergenic 40.0%
AACCAGAAATGACCCACATT+TGG + chr5_1:18874850-18874869 None:intergenic 40.0%
!! TGGGTCATTTCTGGTTCATT+TGG - chr5_1:18874854-18874873 Msa0721870:intron 40.0%
GATCTTAACACCATTGAAGC+TGG - chr5_1:18874881-18874900 Msa0721870:CDS 40.0%
TTAACACCATTGAAGCTGGT+TGG - chr5_1:18874885-18874904 Msa0721870:CDS 40.0%
AGTGATGCATATCAAGCAAC+TGG - chr5_1:18875347-18875366 Msa0721870:intron 40.0%
CCAACTTCTTCATATACTGG+GGG - chr5_1:18875440-18875459 Msa0721870:intron 40.0%
AAATTAAGGGTCCCACCTAA+AGG - chr5_1:18875796-18875815 Msa0721870:intron 40.0%
GAAGCTCTTTGTTGGGAAAA+AGG + chr5_1:18876271-18876290 None:intergenic 40.0%
AAGTGAAATGGGTCAAAAGG+AGG + chr5_1:18876407-18876426 None:intergenic 40.0%
! TAGCATCATGTTAGCTTGGT+TGG + chr5_1:18876431-18876450 None:intergenic 40.0%
AGGATCCAAAGCATGGAAAT+TGG - chr5_1:18876554-18876573 Msa0721870:CDS 40.0%
ATCCAAAGCATGGAAATTGG+TGG - chr5_1:18876557-18876576 Msa0721870:CDS 40.0%
! GGAAATTGGTGGCTTGAATT+TGG - chr5_1:18876568-18876587 Msa0721870:CDS 40.0%
TGAATTTGGGTCCGGAATAT+TGG - chr5_1:18876582-18876601 Msa0721870:CDS 40.0%
CTTAAGGGATCATGCAAGTA+TGG - chr5_1:18876636-18876655 Msa0721870:CDS 40.0%
GCAAGTATGGTACAATTTGG+TGG - chr5_1:18876649-18876668 Msa0721870:CDS 40.0%
GTCACACACTTCAACTCAAA+TGG - chr5_1:18876696-18876715 Msa0721870:CDS 40.0%
ACTTCAACTCAAATGGGTAG+TGG - chr5_1:18876703-18876722 Msa0721870:CDS 40.0%
CAAAACCTTCTCCAGCAAAA+TGG + chr5_1:18876729-18876748 None:intergenic 40.0%
! CATTTTGCTGGAGAAGGTTT+TGG - chr5_1:18876727-18876746 Msa0721870:CDS 40.0%
GGAATTTGCAAGTTGTGGAT+TGG - chr5_1:18876767-18876786 Msa0721870:exon 40.0%
! GTCAAATCTAAGGGTTCTAG+CGG - chr5_1:18876810-18876829 Msa0721870:five_prime_UTR 40.0%
!!! TACTTTTACTATGGTGGACC+AGG - chr5_1:18876886-18876905 Msa0721870:five_prime_UTR 40.0%
GGACATTTCACATTTCTTCC+TGG + chr5_1:18876907-18876926 None:intergenic 40.0%
!!! TCCTTTTTGAAGGGCATTCA+AGG - chr5_1:18877005-18877024 Msa0721870:five_prime_UTR 40.0%
ACCTTGAATGCCCTTCAAAA+AGG + chr5_1:18877009-18877028 None:intergenic 40.0%
CATAAGAGTCCATGCAGTAA+TGG + chr5_1:18877126-18877145 None:intergenic 40.0%
! TAGGAGTGTGTACAAGGGAA+GGG + chr5_1:18872678-18872697 None:intergenic 45.0%
! ATAGGAGTGTGTACAAGGGA+AGG + chr5_1:18872679-18872698 None:intergenic 45.0%
AACTTGAGCTCTCAGGAGTT+GGG + chr5_1:18872815-18872834 None:intergenic 45.0%
TACTGACAACTTGAGCTCTC+AGG + chr5_1:18872822-18872841 None:intergenic 45.0%
!!! TGAGTTTTAGGCCTTTCTGG+AGG + chr5_1:18873692-18873711 None:intergenic 45.0%
! CGAGCGAGAATTTTCAGTCA+TGG - chr5_1:18873729-18873748 Msa0721870:intron 45.0%
TTTCAGTCATGGAGCTTGTC+GGG - chr5_1:18873740-18873759 Msa0721870:intron 45.0%
AACTACCATGAGCCTTTGCA+AGG - chr5_1:18874329-18874348 Msa0721870:CDS 45.0%
CATGCAGTTGGATATGTGAC+TGG - chr5_1:18874746-18874765 Msa0721870:intron 45.0%
AAAGGCCAGCATAAACGTGT+GGG - chr5_1:18874787-18874806 Msa0721870:intron 45.0%
TCCCAAATGTGGGTCATTTC+TGG - chr5_1:18874845-18874864 Msa0721870:intron 45.0%
CCCCCAGTATATGAAGAAGT+TGG + chr5_1:18875443-18875462 None:intergenic 45.0%
! TGGTAGGGTCTCCATTGTTT+TGG - chr5_1:18875952-18875971 Msa0721870:CDS 45.0%
GGCAAGTGAAATGGGTCAAA+AGG + chr5_1:18876410-18876429 None:intergenic 45.0%
GCTTGGTTGGCAAGTGAAAT+GGG + chr5_1:18876418-18876437 None:intergenic 45.0%
AGCTTGGTTGGCAAGTGAAA+TGG + chr5_1:18876419-18876438 None:intergenic 45.0%
AGCCACCAATTTCCATGCTT+TGG + chr5_1:18876562-18876581 None:intergenic 45.0%
TTTGGGTCCGGAATATTGGT+AGG - chr5_1:18876586-18876605 Msa0721870:CDS 45.0%
TTGGGTCCGGAATATTGGTA+GGG - chr5_1:18876587-18876606 Msa0721870:CDS 45.0%
CCAGTACCCTACCAATATTC+CGG + chr5_1:18876596-18876615 None:intergenic 45.0%
!!! CATTTTTTTTTTTTAAATAT+CGG + chr5_1:18874483-18874502 None:intergenic 5.0%
!!! ATAATTTAATTTAGTTTATT+TGG + chr5_1:18875111-18875130 None:intergenic 5.0%
!!! AAATTAAATTATTATTTTTC+AGG - chr5_1:18875119-18875138 Msa0721870:intron 5.0%
!!! TTATTTTTTTATTTTTATAG+TGG - chr5_1:18875604-18875623 Msa0721870:intron 5.0%
!!! ATAAAAAATAATTTTTATCT+TGG + chr5_1:18876056-18876075 None:intergenic 5.0%
! AGGAGTGTGTACAAGGGAAG+GGG + chr5_1:18872677-18872696 None:intergenic 50.0%
TATAAGGGCTCCAACCCACA+TGG - chr5_1:18872742-18872761 Msa0721870:three_prime_UTR 50.0%
ATAAGGGCTCCAACCCACAT+GGG - chr5_1:18872743-18872762 Msa0721870:three_prime_UTR 50.0%
! CAAGTTTTGCCCATGTGGGT+TGG + chr5_1:18872755-18872774 None:intergenic 50.0%
CAACTTGAGCTCTCAGGAGT+TGG + chr5_1:18872816-18872835 None:intergenic 50.0%
CTTGTCGGGTGAATCATGTC+CGG - chr5_1:18873754-18873773 Msa0721870:intron 50.0%
CAAAGGCCAGCATAAACGTG+TGG - chr5_1:18874786-18874805 Msa0721870:intron 50.0%
AACTGTCCCCATAGAGCTCA+GGG + chr5_1:18875149-18875168 None:intergenic 50.0%
TAACTGTCCCCATAGAGCTC+AGG + chr5_1:18875150-18875169 None:intergenic 50.0%
TGGTGGCTTGAATTTGGGTC+CGG - chr5_1:18876574-18876593 Msa0721870:CDS 50.0%
CCGGAATATTGGTAGGGTAC+TGG - chr5_1:18876593-18876612 Msa0721870:CDS 50.0%
!! ATGGGTAGTGGCCATTTTGC+TGG - chr5_1:18876715-18876734 Msa0721870:CDS 50.0%
!! AGTGGCCATTTTGCTGGAGA+AGG - chr5_1:18876721-18876740 Msa0721870:CDS 50.0%
!! TGAAGGGCATTCAAGGTGCT+TGG - chr5_1:18877012-18877031 Msa0721870:five_prime_UTR 50.0%
!! GAAGGGCATTCAAGGTGCTT+GGG - chr5_1:18877013-18877032 Msa0721870:five_prime_UTR 50.0%
!! AAGGGCATTCAAGGTGCTTG+GGG - chr5_1:18877014-18877033 Msa0721870:five_prime_UTR 50.0%
TTGAGCTCTCAGGAGTTGGG+TGG + chr5_1:18872812-18872831 None:intergenic 55.0%
GTGTGCAGGATCCTCCAGAA+AGG - chr5_1:18873678-18873697 Msa0721870:intron 55.0%
TCGGGTGAATCATGTCCGGA+AGG - chr5_1:18873758-18873777 Msa0721870:intron 55.0%
CACCATTGAAGCTGGTTGGC+AGG - chr5_1:18874889-18874908 Msa0721870:CDS 55.0%
TGCCTGCCAACCAGCTTCAA+TGG + chr5_1:18874894-18874913 None:intergenic 55.0%
AGGTCAGCCCTGAGCTCTAT+GGG - chr5_1:18875139-18875158 Msa0721870:intron 55.0%
TGGGGCCCACACGTTTATGC+TGG + chr5_1:18874795-18874814 None:intergenic 60.0%
CAGGTCAGCCCTGAGCTCTA+TGG - chr5_1:18875138-18875157 Msa0721870:intron 60.0%
GGTCAGCCCTGAGCTCTATG+GGG - chr5_1:18875140-18875159 Msa0721870:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 18872602 18877187 18872602 ID=Msa0721870;Name=Msa0721870
chr5_1 mRNA 18872602 18877187 18872602 ID=Msa0721870-mRNA-1;Parent=Msa0721870;Name=Msa0721870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=402|1|1|1|1|1|7|257|464
chr5_1 exon 18872602 18873233 18872602 ID=Msa0721870-mRNA-1:exon:7069;Parent=Msa0721870-mRNA-1
chr5_1 exon 18874296 18874442 18874296 ID=Msa0721870-mRNA-1:exon:7068;Parent=Msa0721870-mRNA-1
chr5_1 exon 18874595 18874648 18874595 ID=Msa0721870-mRNA-1:exon:7067;Parent=Msa0721870-mRNA-1
chr5_1 exon 18874879 18875043 18874879 ID=Msa0721870-mRNA-1:exon:7066;Parent=Msa0721870-mRNA-1
chr5_1 exon 18875891 18876103 18875891 ID=Msa0721870-mRNA-1:exon:7065;Parent=Msa0721870-mRNA-1
chr5_1 exon 18876223 18876309 18876223 ID=Msa0721870-mRNA-1:exon:7064;Parent=Msa0721870-mRNA-1
chr5_1 exon 18876432 18877187 18876432 ID=Msa0721870-mRNA-1:exon:7063;Parent=Msa0721870-mRNA-1
chr5_1 five_prime_UTR 18876786 18877187 18876786 ID=Msa0721870-mRNA-1:five_prime_utr;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18876432 18876785 18876432 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18876223 18876309 18876223 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18875891 18876103 18875891 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18874879 18875043 18874879 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18874595 18874648 18874595 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18874296 18874442 18874296 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 CDS 18872859 18873233 18872859 ID=Msa0721870-mRNA-1:cds;Parent=Msa0721870-mRNA-1
chr5_1 three_prime_UTR 18872602 18872858 18872602 ID=Msa0721870-mRNA-1:three_prime_utr;Parent=Msa0721870-mRNA-1
Gene Sequence

>Msa0721870

ATGTGTTTCCCTTGCCACAATCAAAATCTAGGAACACACAACAATTTTGTTTTTGTAGATGGAAGAAGAAGACAAGATCAATGTGAACTATATCAAAGGGATTCTTCAATAGAAACAAAAAAAGGAAAATTCTCAAGCATGGATTTTAGCTTGTGTTTGACTTCTCCAATCATTTACAATCTTGTACATTTTCTTCTTGTTTTTTCTTTCCTTTGTCCTGTTTTTTCTTCCTCAAAAATTGACAACAACCCTGTTGCCAATAACACTTTTAAACCAAAGGAAGAATTGTTCAAACTAAACATCATAAGAAATCGTCTTCAACAGATCAATAAACCTTCTATTAAGACAATTCAGAGTCCTGACGGTGATATCATAGAATGTGTTGCGTCTCATCAACAACCAGCTTTTGATCATCCTATGTTAAAAGGACAAAGACCACTGGATCCTCCAGAAAGGCCTAAAACTCATAACAACAGGGATGTGTCGAGCGAGAATTTTCAGTCATGGAGCTTGTCGGGTGAATCATGTCCGGAAGGAACAATTCCAATCAGAAGAACAACGGAACAAGACATGTTAAGGGCTAGTTCTATCAATACATTTGGAAGAAAATTAAGAAGACGTGTTAGAAGAGACACAAATAGCAATGGACATGAGCATGCAGTTGGATATGTGACTGGAAATCAATACTATGGAGCAAAGGCCAGCATAAACGTGTGGGCCCCACGTGTTGCAAATCAATATGAATTCAGCTTGTCCCAAATGTGGGTCATTTCTGGTTCATTTGGAGATGATCTTAACACCATTGAAGCTGGTTGGCAGGTCAGCCCTGAGCTCTATGGGGACAGTTACCCTAGATTCTTTACTTATTGGACGAGTGATGCATATCAAGCAACTGGATGCTACAATTTATTGTGTTCTGGCTTTGTTCAAACTAACAATAAAATTGCTATTGGTGCTGCAATCTCTCCAACTTCTTCATATACTGGGGGCCAATTTGATATTAGCTTGCTCATTTGGAAGGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGGTCCGGAATATTGGTAGGGTACTGGCCATCATTTTTGTTCACACACTTAAGGGATCATGCAAGTATGGTACAATTTGGTGGAGAAATTGTGAATTCAAGACAAGGGTCACACACTTCAACTCAAATGGGTAGTGGCCATTTTGCTGGAGAAGGTTTTGGAAAAGCATCATACTTTAGGAATTTGCAAGTTGTGGATTGGGATAACAATTTGATACCCTTGTCAAATCTAAGGGTTCTAGCGGATCATCCAAATTGCTATGACATACAAGGAGGAATAAATAATGTTTGGGGGAATTACTTTTACTATGGTGGACCAGGAAGAAATGTGAAATGTCCCTAA
Protein sequence

>Msa0721870

MCFPCHNQNLGTHNNFVFVDGRRRQDQCELYQRDSSIETKKGKFSSMDFSLCLTSPIIYNLVHFLLVFSFLCPVFSSSKIDNNPVANNTFKPKEELFKLNIIRNRLQQINKPSIKTIQSPDGDIIECVASHQQPAFDHPMLKGQRPLDPPERPKTHNNRDVSSENFQSWSLSGESCPEGTIPIRRTTEQDMLRASSINTFGRKLRRRVRRDTNSNGHEHAVGYVTGNQYYGAKASINVWAPRVANQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDSYPRFFTYWTSDAYQATGCYNLLCSGFVQTNNKIAIGAAISPTSSYTGGQFDISLLIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLRDHASMVQFGGEIVNSRQGSHTSTQMGSGHFAGEGFGKASYFRNLQVVDWDNNLIPLSNLRVLADHPNCYDIQGGINNVWGNYFYYGGPGRNVKCP*