Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723920 | XP_003613423.1 | 92.827 | 237 | 16 | 1 | 1 | 236 | 1 | 237 | 5.06e-130 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723920 | sp|Q9ZWS9|ARR3_ARATH | 56.579 | 228 | 60 | 5 | 11 | 228 | 28 | 226 | 1.49e-73 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723920 | G7K5L8 | 92.827 | 237 | 16 | 1 | 1 | 236 | 1 | 237 | 2.42e-130 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0723920 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723920 | Msa0764500 | 0.914833 | 1.204772e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723920 | MtrunA17_Chr5g0414931 | 92.827 | 237 | 16 | 1 | 1 | 236 | 1 | 237 | 4.66e-134 | 377 |
| Msa0723920 | MtrunA17_Chr1g0170741 | 67.797 | 236 | 38 | 4 | 1 | 236 | 1 | 198 | 5.16e-89 | 261 |
| Msa0723920 | MtrunA17_Chr4g0059571 | 72.727 | 143 | 35 | 1 | 15 | 157 | 25 | 163 | 2.65e-66 | 204 |
| Msa0723920 | MtrunA17_Chr7g0256551 | 59.873 | 157 | 58 | 2 | 15 | 166 | 8 | 164 | 8.66e-62 | 193 |
| Msa0723920 | MtrunA17_Chr3g0118211 | 68.613 | 137 | 39 | 1 | 15 | 151 | 22 | 154 | 5.07e-61 | 190 |
| Msa0723920 | MtrunA17_Chr8g0352871 | 58.784 | 148 | 55 | 2 | 15 | 157 | 8 | 154 | 3.82e-54 | 172 |
| Msa0723920 | MtrunA17_Chr3g0082861 | 57.639 | 144 | 56 | 1 | 15 | 153 | 3 | 146 | 5.08e-54 | 171 |
| Msa0723920 | MtrunA17_Chr3g0128691 | 59.701 | 134 | 46 | 3 | 17 | 147 | 19 | 147 | 1.07e-50 | 162 |
| Msa0723920 | MtrunA17_Chr3g0124861 | 50.000 | 152 | 61 | 3 | 10 | 147 | 16 | 166 | 2.66e-46 | 154 |
| Msa0723920 | MtrunA17_Chr4g0021731 | 61.905 | 84 | 26 | 3 | 15 | 97 | 10 | 88 | 4.93e-26 | 97.1 |
| Msa0723920 | MtrunA17_Chr4g0030271 | 35.556 | 135 | 74 | 2 | 16 | 150 | 89 | 210 | 2.75e-18 | 83.6 |
| Msa0723920 | MtrunA17_Chr3g0127941 | 29.534 | 193 | 109 | 5 | 16 | 194 | 56 | 235 | 3.32e-17 | 80.1 |
| Msa0723920 | MtrunA17_Chr1g0181811 | 31.579 | 133 | 78 | 2 | 18 | 150 | 87 | 206 | 1.34e-14 | 72.8 |
| Msa0723920 | MtrunA17_Chr8g0345901 | 30.216 | 139 | 84 | 1 | 14 | 152 | 34 | 159 | 2.22e-14 | 72.0 |
| Msa0723920 | MtrunA17_Chr7g0276361 | 28.758 | 153 | 91 | 4 | 22 | 174 | 22 | 156 | 6.22e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723920 | AT1G59940.1 | 56.579 | 228 | 60 | 5 | 11 | 228 | 28 | 226 | 1.52e-74 | 226 |
| Msa0723920 | AT1G59940.2 | 56.579 | 228 | 60 | 5 | 11 | 228 | 120 | 318 | 4.02e-73 | 225 |
| Msa0723920 | AT1G10470.3 | 53.755 | 253 | 58 | 8 | 11 | 232 | 15 | 239 | 5.48e-71 | 217 |
| Msa0723920 | AT1G10470.1 | 53.755 | 253 | 58 | 8 | 11 | 232 | 29 | 253 | 1.37e-70 | 217 |
| Msa0723920 | AT3G48100.1 | 71.942 | 139 | 36 | 2 | 16 | 154 | 25 | 160 | 2.32e-65 | 201 |
| Msa0723920 | AT5G62920.1 | 76.154 | 130 | 25 | 2 | 16 | 144 | 25 | 149 | 6.88e-64 | 197 |
| Msa0723920 | AT1G19050.1 | 63.576 | 151 | 51 | 1 | 1 | 151 | 9 | 155 | 2.46e-60 | 189 |
| Msa0723920 | AT3G57040.2 | 56.725 | 171 | 63 | 3 | 15 | 179 | 8 | 173 | 6.30e-60 | 189 |
| Msa0723920 | AT3G57040.1 | 56.725 | 171 | 63 | 3 | 15 | 179 | 8 | 173 | 6.30e-60 | 189 |
| Msa0723920 | AT1G74890.1 | 70.000 | 130 | 35 | 1 | 15 | 144 | 17 | 142 | 9.08e-59 | 185 |
| Msa0723920 | AT2G41310.1 | 60.544 | 147 | 54 | 2 | 15 | 157 | 8 | 154 | 4.89e-57 | 181 |
| Msa0723920 | AT3G56380.1 | 60.448 | 134 | 50 | 1 | 14 | 147 | 18 | 148 | 1.59e-56 | 177 |
| Msa0723920 | AT2G40670.1 | 60.000 | 135 | 51 | 2 | 14 | 147 | 27 | 159 | 7.81e-55 | 173 |
| Msa0723920 | AT3G56380.2 | 60.000 | 135 | 50 | 2 | 14 | 147 | 18 | 149 | 8.71e-55 | 173 |
| Msa0723920 | AT2G40670.2 | 59.559 | 136 | 51 | 3 | 14 | 147 | 27 | 160 | 4.09e-53 | 169 |
| Msa0723920 | AT1G10470.2 | 39.247 | 186 | 56 | 9 | 79 | 232 | 17 | 177 | 1.57e-21 | 88.6 |
| Msa0723920 | AT2G07440.1 | 55.000 | 60 | 27 | 0 | 98 | 157 | 9 | 68 | 3.85e-15 | 70.5 |
| Msa0723920 | AT5G24470.1 | 31.387 | 137 | 79 | 3 | 16 | 152 | 52 | 173 | 1.18e-14 | 73.2 |
| Msa0723920 | AT5G60100.7 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 1.18e-14 | 72.8 |
| Msa0723920 | AT5G60100.6 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 1.18e-14 | 72.8 |
| Msa0723920 | AT5G60100.4 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 1.18e-14 | 72.8 |
| Msa0723920 | AT5G60100.2 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 1.98e-14 | 72.4 |
| Msa0723920 | AT2G46790.3 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 2.15e-14 | 72.0 |
| Msa0723920 | AT2G46790.1 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 2.57e-14 | 72.0 |
| Msa0723920 | AT5G60100.5 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 2.74e-14 | 72.0 |
| Msa0723920 | AT5G60100.3 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 2.74e-14 | 72.0 |
| Msa0723920 | AT5G60100.1 | 35.338 | 133 | 73 | 2 | 18 | 150 | 66 | 185 | 2.74e-14 | 72.0 |
| Msa0723920 | AT5G07210.2 | 32.576 | 132 | 72 | 3 | 15 | 146 | 15 | 129 | 1.19e-13 | 70.1 |
| Msa0723920 | AT5G02810.1 | 30.370 | 135 | 81 | 1 | 16 | 150 | 78 | 199 | 1.46e-13 | 70.1 |
Find 69 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCACTCCTCAATATTTA+AGG | 0.117042 | 5_1:+21960141 | Msa0723920:five_prime_UTR |
| AATAAGAGCACTACAATTTC+TGG | 0.202396 | 5_1:+21960566 | Msa0723920:CDS |
| TTCATCTTTAGTAAAGAAAA+AGG | 0.245307 | 5_1:-21963083 | None:intergenic |
| TTCTCAAGAGGTTCATGTTT+TGG | 0.250601 | 5_1:+21960279 | Msa0723920:CDS |
| ATCCCCTTTATCTTTCTCTT+TGG | 0.281133 | 5_1:+21960185 | Msa0723920:five_prime_UTR |
| ACTGGCACCGAATGACTCTT+TGG | 0.303564 | 5_1:+21962787 | Msa0723920:exon |
| CAAAAGGGCATAATCTTTAT+AGG | 0.307190 | 5_1:-21963123 | None:intergenic |
| GAAACCAAAGAGAAAGATAA+AGG | 0.307874 | 5_1:-21960189 | None:intergenic |
| GCAATTACATACCCGTTGTT+TGG | 0.343337 | 5_1:+21962893 | Msa0723920:three_prime_UTR |
| GTTTCCTTAGCCTGGTTTGA+AGG | 0.364670 | 5_1:+21960721 | Msa0723920:intron |
| CTCAAAATTTCTTCTTGTAA+AGG | 0.371492 | 5_1:+21960346 | Msa0723920:CDS |
| GTTCTTAATGATCTTATCCA+TGG | 0.386429 | 5_1:+21962939 | Msa0723920:three_prime_UTR |
| GAGGTGAACAAGTAAATGTT+TGG | 0.399962 | 5_1:-21962854 | None:intergenic |
| ATCTGATGTAAAACGTTTGA+AGG | 0.402266 | 5_1:+21962501 | Msa0723920:CDS |
| AACTCATAACCAGTCATTCC+TGG | 0.425647 | 5_1:-21961940 | None:intergenic |
| AAACCAAAGAGAAAGATAAA+GGG | 0.427147 | 5_1:-21960188 | None:intergenic |
| TGAAAGTGTTGATGATGAAA+TGG | 0.443172 | 5_1:-21962680 | None:intergenic |
| AGCACTACAATTTCTGGGGT+TGG | 0.454081 | 5_1:+21960572 | Msa0723920:CDS |
| ATAAGAGCACTACAATTTCT+GGG | 0.455946 | 5_1:+21960567 | Msa0723920:CDS |
| TGAGTTGCTTAAGAAAATCA+AGG | 0.460054 | 5_1:+21961957 | Msa0723920:CDS |
| TACATACCCGTTGTTTGGAC+CGG | 0.469355 | 5_1:+21962898 | Msa0723920:three_prime_UTR |
| GCCACTGATTATTGCATGCC+AGG | 0.469495 | 5_1:+21961922 | Msa0723920:intron |
| TCAGAAGACATGATCACTAC+TGG | 0.477520 | 5_1:-21962106 | None:intergenic |
| GGATAGGGATCAACAACAAA+AGG | 0.483740 | 5_1:+21962617 | Msa0723920:CDS |
| ACATCTTGCCACGCATTGAC+AGG | 0.484895 | 5_1:+21962131 | Msa0723920:CDS |
| TAACGATAACTTCAGTGTCT+TGG | 0.490936 | 5_1:-21962558 | None:intergenic |
| GTTGGTAACGGTGTAGGGAT+AGG | 0.493017 | 5_1:+21962601 | Msa0723920:CDS |
| TTCTTAATGATCTTATCCAT+GGG | 0.496436 | 5_1:+21962940 | Msa0723920:three_prime_UTR |
| TCCTTAGCCTGGTTTGAAGG+TGG | 0.500088 | 5_1:+21960724 | Msa0723920:intron |
| GCTTCCCGCTCTAACCTCCC+TGG | 0.501953 | 5_1:-21962536 | None:intergenic |
| ATTGGAGAATCAAGAATGTT+GGG | 0.503176 | 5_1:-21962748 | None:intergenic |
| TATTGCATGCCAGGAATGAC+TGG | 0.505381 | 5_1:+21961931 | Msa0723920:CDS |
| TACTGGAATTGCTCTAAAAG+TGG | 0.506655 | 5_1:-21962089 | None:intergenic |
| GACAACCAGGGAGGTTAGAG+CGG | 0.506833 | 5_1:+21962531 | Msa0723920:CDS |
| GATTGGAGAATCAAGAATGT+TGG | 0.511674 | 5_1:-21962749 | None:intergenic |
| TTGGTAACGGTGTAGGGATA+GGG | 0.512504 | 5_1:+21962602 | Msa0723920:CDS |
| TTTACATCAGATAATTTCAC+TGG | 0.513966 | 5_1:-21962490 | None:intergenic |
| TAAAGGGGATTCTTTAACGT+AGG | 0.531207 | 5_1:-21960172 | None:intergenic |
| TTGATCGTAAAGTAATTGAA+AGG | 0.534403 | 5_1:+21960320 | Msa0723920:CDS |
| TGTCACAACCTTAAATATTG+AGG | 0.535817 | 5_1:-21960149 | None:intergenic |
| TGACAATCCAAAGAGTCATT+CGG | 0.543587 | 5_1:-21962794 | None:intergenic |
| ATCCGACGGCTTAAAATGAC+TGG | 0.550169 | 5_1:+21962769 | Msa0723920:CDS |
| TACACCGTTACCAACGGTGC+TGG | 0.561396 | 5_1:-21962593 | None:intergenic |
| GCACCGTTGGTAACGGTGTA+GGG | 0.562150 | 5_1:+21962596 | Msa0723920:CDS |
| TCTGATGTAAAACGTTTGAA+GGG | 0.564044 | 5_1:+21962502 | Msa0723920:CDS |
| AACGGTGCTGGTTACAGTGT+TGG | 0.567334 | 5_1:-21962581 | None:intergenic |
| TATTGATGTTGATTCTCAAG+AGG | 0.575024 | 5_1:+21960267 | Msa0723920:CDS |
| TTCTTGATTCTCCAATCCGA+CGG | 0.580526 | 5_1:+21962755 | Msa0723920:CDS |
| GAAGGTGACGGTGATGATGA+TGG | 0.581069 | 5_1:-21962706 | None:intergenic |
| AAACAAAATAAATTAACCCA+TGG | 0.592303 | 5_1:-21962956 | None:intergenic |
| ACTAGATCCACCTTCAAACC+AGG | 0.592739 | 5_1:-21960731 | None:intergenic |
| ACAACCAGGGAGGTTAGAGC+GGG | 0.595105 | 5_1:+21962532 | Msa0723920:CDS |
| AGCACCGTTGGTAACGGTGT+AGG | 0.596200 | 5_1:+21962595 | Msa0723920:CDS |
| TGAAGGGTTACATGACAACC+AGG | 0.599838 | 5_1:+21962518 | Msa0723920:CDS |
| GTAACCAGCACCGTTGGTAA+CGG | 0.612875 | 5_1:+21962589 | Msa0723920:CDS |
| AAATGTAGATGCTTGGAGGA+AGG | 0.613553 | 5_1:+21962445 | Msa0723920:intron |
| AACCAAAGAGAAAGATAAAG+GGG | 0.615410 | 5_1:-21960187 | None:intergenic |
| TTAGTTACTGCAGTGGACAG+TGG | 0.615929 | 5_1:+21960543 | Msa0723920:intron |
| GGATAAGATCATTAAGAACA+AGG | 0.618730 | 5_1:-21962935 | None:intergenic |
| AACACTGTAACCAGCACCGT+TGG | 0.627935 | 5_1:+21962583 | Msa0723920:CDS |
| GAAGACAACGGTGATGATGA+AGG | 0.631209 | 5_1:-21962724 | None:intergenic |
| ATGCTTGGAGGAAGGTGCAG+AGG | 0.640084 | 5_1:+21962453 | Msa0723920:CDS |
| TAAGAGCACTACAATTTCTG+GGG | 0.651134 | 5_1:+21960568 | Msa0723920:CDS |
| TATCCCTACACCGTTACCAA+CGG | 0.659748 | 5_1:-21962599 | None:intergenic |
| GTTGATGATGAAATGGACAG+TGG | 0.726606 | 5_1:-21962673 | None:intergenic |
| AACGGTGATGATGAAGGTGA+CGG | 0.733254 | 5_1:-21962718 | None:intergenic |
| GAAGGGTTACATGACAACCA+GGG | 0.738936 | 5_1:+21962519 | Msa0723920:CDS |
| AGAATGTTGGGTGAAGACAA+CGG | 0.739291 | 5_1:-21962736 | None:intergenic |
| GGGTTACATGACAACCAGGG+AGG | 0.751767 | 5_1:+21962522 | Msa0723920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAACTTATTAAAC+TGG | + | chr5_1:21961571-21961590 | Msa0723920:intron | 10.0% |
| !! | AATTAAAATATATAAGCAAA+TGG | - | chr5_1:21961861-21961880 | None:intergenic | 10.0% |
| !!! | ATTTTAATTTATTTTGATTG+CGG | + | chr5_1:21961872-21961891 | Msa0723920:intron | 10.0% |
| !! | TAAATATTCATGAAATGAAT+TGG | + | chr5_1:21961443-21961462 | Msa0723920:intron | 15.0% |
| !! | TACTTTGTATTAAAAAATGT+AGG | - | chr5_1:21962304-21962323 | None:intergenic | 15.0% |
| !! | TCATATACTTTGAATTAAAT+TGG | - | chr5_1:21962337-21962356 | None:intergenic | 15.0% |
| !! | GAAATTATTATGTAGAAAAA+TGG | + | chr5_1:21962401-21962420 | Msa0723920:intron | 15.0% |
| !! | ACAAAACAAAAAGAAGAAAA+TGG | + | chr5_1:21960378-21960397 | Msa0723920:intron | 20.0% |
| !!! | TTTCTTTTGCTCATTTTTAA+AGG | + | chr5_1:21960403-21960422 | Msa0723920:intron | 20.0% |
| !! | TAATATTAAAATTACCTCAG+GGG | - | chr5_1:21960844-21960863 | None:intergenic | 20.0% |
| !! | GTAATATTAAAATTACCTCA+GGG | - | chr5_1:21960845-21960864 | None:intergenic | 20.0% |
| !!! | AGAATACACTTACATTTTTA+GGG | - | chr5_1:21961122-21961141 | None:intergenic | 20.0% |
| !!! | GTTTGTTAATGAATTTGATT+TGG | + | chr5_1:21961190-21961209 | Msa0723920:intron | 20.0% |
| !!! | TTTCCATTAGAATGATTTTT+AGG | + | chr5_1:21961596-21961615 | Msa0723920:intron | 20.0% |
| !! | TTGATCAATTTGAATTACAA+TGG | + | chr5_1:21961731-21961750 | Msa0723920:intron | 20.0% |
| !! | CAATAAAGTGTAAAAATGAA+GGG | - | chr5_1:21962007-21962026 | None:intergenic | 20.0% |
| !! | TCAATAAAGTGTAAAAATGA+AGG | - | chr5_1:21962008-21962027 | None:intergenic | 20.0% |
| !! | AAACAAAATAAATTAACCCA+TGG | - | chr5_1:21962959-21962978 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTAGTATGAAAG+TGG | + | chr5_1:21962972-21962991 | Msa0723920:three_prime_UTR | 20.0% |
| !!! | TTGTTTTTTAGTATGAAAGT+GGG | + | chr5_1:21962973-21962992 | Msa0723920:three_prime_UTR | 20.0% |
| !! | GTAAAAAAAGAAGTAGAAAT+TGG | + | chr5_1:21963000-21963019 | Msa0723920:three_prime_UTR | 20.0% |
| !! | ATCCAAAAAATTATGAAAGT+GGG | + | chr5_1:21963023-21963042 | Msa0723920:three_prime_UTR | 20.0% |
| !! | TTCATCTTTAGTAAAGAAAA+AGG | - | chr5_1:21963086-21963105 | None:intergenic | 20.0% |
| ! | ATATCACTCCTCAATATTTA+AGG | + | chr5_1:21960141-21960160 | Msa0723920:five_prime_UTR | 25.0% |
| ! | AAACCAAAGAGAAAGATAAA+GGG | - | chr5_1:21960191-21960210 | None:intergenic | 25.0% |
| !! | CTCTTTGAAGAAAAAAAAGA+GGG | - | chr5_1:21960220-21960239 | None:intergenic | 25.0% |
| !! | TCTCTTTGAAGAAAAAAAAG+AGG | - | chr5_1:21960221-21960240 | None:intergenic | 25.0% |
| ! | TTGATCGTAAAGTAATTGAA+AGG | + | chr5_1:21960320-21960339 | Msa0723920:CDS | 25.0% |
| ! | CTCAAAATTTCTTCTTGTAA+AGG | + | chr5_1:21960346-21960365 | Msa0723920:CDS | 25.0% |
| !!! | TTTATTTTTAGTTACTGCAG+TGG | + | chr5_1:21960536-21960555 | Msa0723920:intron | 25.0% |
| !! | AGTCTTTTCACACAATTAAT+GGG | - | chr5_1:21960815-21960834 | None:intergenic | 25.0% |
| !! | TAGTCTTTTCACACAATTAA+TGG | - | chr5_1:21960816-21960835 | None:intergenic | 25.0% |
| ! | GGTAATATTAAAATTACCTC+AGG | - | chr5_1:21960846-21960865 | None:intergenic | 25.0% |
| !! | CAGAATACACTTACATTTTT+AGG | - | chr5_1:21961123-21961142 | None:intergenic | 25.0% |
| ! | TAACCCTAATCAAAACAAAA+AGG | + | chr5_1:21961234-21961253 | Msa0723920:intron | 25.0% |
| ! | AACCCTAATCAAAACAAAAA+GGG | + | chr5_1:21961235-21961254 | Msa0723920:intron | 25.0% |
| !!! | AACCCTTTTTGTTTTGATTA+GGG | - | chr5_1:21961240-21961259 | None:intergenic | 25.0% |
| !!! | AAACCCTTTTTGTTTTGATT+AGG | - | chr5_1:21961241-21961260 | None:intergenic | 25.0% |
| ! | TCAATCTAGGTAAAAAGTTA+TGG | - | chr5_1:21961335-21961354 | None:intergenic | 25.0% |
| !! | AAATTGAGGAATTGATAACA+GGG | + | chr5_1:21961376-21961395 | Msa0723920:intron | 25.0% |
| ! | CATTTCATGAATATTTAACC+TGG | - | chr5_1:21961440-21961459 | None:intergenic | 25.0% |
| ! | TCTTGTAAAAGTTTCATCAT+TGG | + | chr5_1:21961494-21961513 | Msa0723920:intron | 25.0% |
| ! | GAACTAAATATTGCATACTA+AGG | + | chr5_1:21961516-21961535 | Msa0723920:intron | 25.0% |
| ! | CATCCTAAAAATCATTCTAA+TGG | - | chr5_1:21961602-21961621 | None:intergenic | 25.0% |
| ! | CTTATTAACTATACAAAGAG+TGG | - | chr5_1:21961629-21961648 | None:intergenic | 25.0% |
| ! | CTTATTAACTATACAAAGAG+TGG | - | chr5_1:21961629-21961648 | None:intergenic | 25.0% |
| ! | CAAATGATACAATAAGCAAA+TGG | - | chr5_1:21961778-21961797 | None:intergenic | 25.0% |
| ! | ATTGAAAAAATGTAGATGCT+TGG | + | chr5_1:21962438-21962457 | Msa0723920:intron | 25.0% |
| ! | TTTACATCAGATAATTTCAC+TGG | - | chr5_1:21962493-21962512 | None:intergenic | 25.0% |
| !! | TGCATTTTAAACATCAAAAG+AGG | - | chr5_1:21962876-21962895 | None:intergenic | 25.0% |
| ! | TTCTTAATGATCTTATCCAT+GGG | + | chr5_1:21962940-21962959 | Msa0723920:three_prime_UTR | 25.0% |
| ! | GATCCAAAAAATTATGAAAG+TGG | + | chr5_1:21963022-21963041 | Msa0723920:three_prime_UTR | 25.0% |
| !!! | AACCCACTTTCATAATTTTT+TGG | - | chr5_1:21963028-21963047 | None:intergenic | 25.0% |
| TGTCACAACCTTAAATATTG+AGG | - | chr5_1:21960152-21960171 | None:intergenic | 30.0% | |
| AACCAAAGAGAAAGATAAAG+GGG | - | chr5_1:21960190-21960209 | None:intergenic | 30.0% | |
| GAAACCAAAGAGAAAGATAA+AGG | - | chr5_1:21960192-21960211 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCAAAGAGAGTGA+TGG | + | chr5_1:21960225-21960244 | Msa0723920:exon | 30.0% |
| !! | TATTGATGTTGATTCTCAAG+AGG | + | chr5_1:21960267-21960286 | Msa0723920:CDS | 30.0% |
| !! | AATAAGAGCACTACAATTTC+TGG | + | chr5_1:21960566-21960585 | Msa0723920:CDS | 30.0% |
| !! | ATAAGAGCACTACAATTTCT+GGG | + | chr5_1:21960567-21960586 | Msa0723920:CDS | 30.0% |
| !!! | TTTATTTTGTTTCCTTAGCC+TGG | + | chr5_1:21960713-21960732 | Msa0723920:intron | 30.0% |
| TAATTACAGATTATTGCCAG+TGG | + | chr5_1:21960753-21960772 | Msa0723920:intron | 30.0% | |
| !! | TTTTCACACAATTAATGGGT+AGG | - | chr5_1:21960811-21960830 | None:intergenic | 30.0% |
| AGAAAAGATGGAATGAAAGT+GGG | - | chr5_1:21960890-21960909 | None:intergenic | 30.0% | |
| AAACAAAGTCAATTCTCCAT+TGG | + | chr5_1:21961073-21961092 | Msa0723920:intron | 30.0% | |
| GCAGATAAATCTTCAAATTG+AGG | + | chr5_1:21961362-21961381 | Msa0723920:intron | 30.0% | |
| ! | CAAATTGAGGAATTGATAAC+AGG | + | chr5_1:21961375-21961394 | Msa0723920:intron | 30.0% |
| TTTGTGCAAATATTTCTCAC+TGG | + | chr5_1:21961805-21961824 | Msa0723920:intron | 30.0% | |
| TGAGTTGCTTAAGAAAATCA+AGG | + | chr5_1:21961957-21961976 | Msa0723920:CDS | 30.0% | |
| ATCTGATGTAAAACGTTTGA+AGG | + | chr5_1:21962501-21962520 | Msa0723920:CDS | 30.0% | |
| TCTGATGTAAAACGTTTGAA+GGG | + | chr5_1:21962502-21962521 | Msa0723920:CDS | 30.0% | |
| !! | TGAAAGTGTTGATGATGAAA+TGG | - | chr5_1:21962683-21962702 | None:intergenic | 30.0% |
| ATTGGAGAATCAAGAATGTT+GGG | - | chr5_1:21962751-21962770 | None:intergenic | 30.0% | |
| GGATAAGATCATTAAGAACA+AGG | - | chr5_1:21962938-21962957 | None:intergenic | 30.0% | |
| GTTCTTAATGATCTTATCCA+TGG | + | chr5_1:21962939-21962958 | Msa0723920:three_prime_UTR | 30.0% | |
| TAAAGGGGATTCTTTAACGT+AGG | - | chr5_1:21960175-21960194 | None:intergenic | 35.0% | |
| ATCCCCTTTATCTTTCTCTT+TGG | + | chr5_1:21960185-21960204 | Msa0723920:five_prime_UTR | 35.0% | |
| ! | TTCTCAAGAGGTTCATGTTT+TGG | + | chr5_1:21960279-21960298 | Msa0723920:CDS | 35.0% |
| !! | TAAGAGCACTACAATTTCTG+GGG | + | chr5_1:21960568-21960587 | Msa0723920:CDS | 35.0% |
| AAAAGACTATAATACCCCTG+AGG | + | chr5_1:21960827-21960846 | Msa0723920:intron | 35.0% | |
| GAGAAAAGATGGAATGAAAG+TGG | - | chr5_1:21960891-21960910 | None:intergenic | 35.0% | |
| ! | TGGAGAATTGACTTTGTTTC+TGG | - | chr5_1:21961072-21961091 | None:intergenic | 35.0% |
| ATCTGCAATCTGTTCAATCT+AGG | - | chr5_1:21961348-21961367 | None:intergenic | 35.0% | |
| CTGTCTACTAATGTTTATCC+AGG | + | chr5_1:21961419-21961438 | Msa0723920:intron | 35.0% | |
| CAAATATTTCTCACTGGCAT+TGG | + | chr5_1:21961811-21961830 | Msa0723920:intron | 35.0% | |
| ! | CCAGACAAAAAATAATGGGA+TGG | - | chr5_1:21961898-21961917 | None:intergenic | 35.0% |
| !!! | CCATCCCATTATTTTTTGTC+TGG | + | chr5_1:21961895-21961914 | Msa0723920:intron | 35.0% |
| GGAGCCAGACAAAAAATAAT+GGG | - | chr5_1:21961902-21961921 | None:intergenic | 35.0% | |
| ! | TCCAAGTTTCAATTTGAAGC+AGG | + | chr5_1:21962060-21962079 | Msa0723920:intron | 35.0% |
| TCCTGCTTCAAATTGAAACT+TGG | - | chr5_1:21962064-21962083 | None:intergenic | 35.0% | |
| !! | TACTGGAATTGCTCTAAAAG+TGG | - | chr5_1:21962092-21962111 | None:intergenic | 35.0% |
| AAAAAATACCTGTCAATGCG+TGG | - | chr5_1:21962142-21962161 | None:intergenic | 35.0% | |
| GAAAAAATGTAGATGCTTGG+AGG | + | chr5_1:21962441-21962460 | Msa0723920:intron | 35.0% | |
| TAACGATAACTTCAGTGTCT+TGG | - | chr5_1:21962561-21962580 | None:intergenic | 35.0% | |
| GATTGGAGAATCAAGAATGT+TGG | - | chr5_1:21962752-21962771 | None:intergenic | 35.0% | |
| TGACAATCCAAAGAGTCATT+CGG | - | chr5_1:21962797-21962816 | None:intergenic | 35.0% | |
| GAGGTGAACAAGTAAATGTT+TGG | - | chr5_1:21962857-21962876 | None:intergenic | 35.0% | |
| TTACAGATTATTGCCAGTGG+CGG | + | chr5_1:21960756-21960775 | Msa0723920:intron | 40.0% | |
| GGAATGAAAGTGGGATAGTT+GGG | - | chr5_1:21960881-21960900 | None:intergenic | 40.0% | |
| TGGAATGAAAGTGGGATAGT+TGG | - | chr5_1:21960882-21960901 | None:intergenic | 40.0% | |
| !! | TACTGGTTCTGGAGAAAAGA+TGG | - | chr5_1:21960902-21960921 | None:intergenic | 40.0% |
| ! | AATCGTTTTCTCTTCTCCCT+TGG | + | chr5_1:21960949-21960968 | Msa0723920:intron | 40.0% |
| AGTAGAGAGATTGAGACCAA+TGG | - | chr5_1:21961092-21961111 | None:intergenic | 40.0% | |
| CTTTATCAGTGATCACGCAT+TGG | + | chr5_1:21961291-21961310 | Msa0723920:intron | 40.0% | |
| CGGAGCCAGACAAAAAATAA+TGG | - | chr5_1:21961903-21961922 | None:intergenic | 40.0% | |
| AACTCATAACCAGTCATTCC+TGG | - | chr5_1:21961943-21961962 | None:intergenic | 40.0% | |
| TCAGAAGACATGATCACTAC+TGG | - | chr5_1:21962109-21962128 | None:intergenic | 40.0% | |
| AAATGTAGATGCTTGGAGGA+AGG | + | chr5_1:21962445-21962464 | Msa0723920:intron | 40.0% | |
| GGATAGGGATCAACAACAAA+AGG | + | chr5_1:21962617-21962636 | Msa0723920:CDS | 40.0% | |
| !! | GTTGATGATGAAATGGACAG+TGG | - | chr5_1:21962676-21962695 | None:intergenic | 40.0% |
| AGAATGTTGGGTGAAGACAA+CGG | - | chr5_1:21962739-21962758 | None:intergenic | 40.0% | |
| TTCTTGATTCTCCAATCCGA+CGG | + | chr5_1:21962755-21962774 | Msa0723920:CDS | 40.0% | |
| GCAATTACATACCCGTTGTT+TGG | + | chr5_1:21962893-21962912 | Msa0723920:three_prime_UTR | 40.0% | |
| ACAAAAACCGGTCCAAACAA+CGG | - | chr5_1:21962908-21962927 | None:intergenic | 40.0% | |
| CAAGGCAATGCAACAAAAAC+CGG | - | chr5_1:21962920-21962939 | None:intergenic | 40.0% | |
| TTAGTTACTGCAGTGGACAG+TGG | + | chr5_1:21960543-21960562 | Msa0723920:intron | 45.0% | |
| !! | AGCACTACAATTTCTGGGGT+TGG | + | chr5_1:21960572-21960591 | Msa0723920:CDS | 45.0% |
| ! | GTTTCCTTAGCCTGGTTTGA+AGG | + | chr5_1:21960721-21960740 | Msa0723920:intron | 45.0% |
| ACTAGATCCACCTTCAAACC+AGG | - | chr5_1:21960734-21960753 | None:intergenic | 45.0% | |
| ! | CACAATTAATGGGTAGGCCA+TGG | - | chr5_1:21960805-21960824 | None:intergenic | 45.0% |
| AAAGTGGGATAGTTGGGTAG+TGG | - | chr5_1:21960875-21960894 | None:intergenic | 45.0% | |
| CAGTACGTGTACGTGAAACA+GGG | + | chr5_1:21960917-21960936 | Msa0723920:intron | 45.0% | |
| ! | CTGGAGATTGATTCAGAGAG+AGG | - | chr5_1:21961053-21961072 | None:intergenic | 45.0% |
| !! | GATCACGCATTGGCTACAAA+TGG | + | chr5_1:21961301-21961320 | Msa0723920:intron | 45.0% |
| !! | GCATTGGCTACAAATGGAAC+AGG | + | chr5_1:21961307-21961326 | Msa0723920:intron | 45.0% |
| TGGCATGCAATAATCAGTGG+CGG | - | chr5_1:21961923-21961942 | None:intergenic | 45.0% | |
| TCCTGGCATGCAATAATCAG+TGG | - | chr5_1:21961926-21961945 | None:intergenic | 45.0% | |
| TATTGCATGCCAGGAATGAC+TGG | + | chr5_1:21961931-21961950 | Msa0723920:CDS | 45.0% | |
| TGAAGGGTTACATGACAACC+AGG | + | chr5_1:21962518-21962537 | Msa0723920:CDS | 45.0% | |
| GAAGGGTTACATGACAACCA+GGG | + | chr5_1:21962519-21962538 | Msa0723920:CDS | 45.0% | |
| TATCCCTACACCGTTACCAA+CGG | - | chr5_1:21962602-21962621 | None:intergenic | 45.0% | |
| !! | TTGGTAACGGTGTAGGGATA+GGG | + | chr5_1:21962602-21962621 | Msa0723920:CDS | 45.0% |
| ! | AACGGTGATGATGAAGGTGA+CGG | - | chr5_1:21962721-21962740 | None:intergenic | 45.0% |
| ! | GAAGACAACGGTGATGATGA+AGG | - | chr5_1:21962727-21962746 | None:intergenic | 45.0% |
| !! | GTCATTTTAAGCCGTCGGAT+TGG | - | chr5_1:21962769-21962788 | None:intergenic | 45.0% |
| ATCCGACGGCTTAAAATGAC+TGG | + | chr5_1:21962769-21962788 | Msa0723920:CDS | 45.0% | |
| !! | TGCCAGTCATTTTAAGCCGT+CGG | - | chr5_1:21962774-21962793 | None:intergenic | 45.0% |
| TACATACCCGTTGTTTGGAC+CGG | + | chr5_1:21962898-21962917 | Msa0723920:three_prime_UTR | 45.0% | |
| CAAAAACCGGTCCAAACAAC+GGG | - | chr5_1:21962907-21962926 | None:intergenic | 45.0% | |
| !! | CTAAAATAAAAAATTTAAAT+TGG | - | chr5_1:21960643-21960662 | None:intergenic | 5.0% |
| !!! | ATTTAAATTTTTTATTTTAG+CGG | + | chr5_1:21960643-21960662 | Msa0723920:intron | 5.0% |
| ! | TCCTTAGCCTGGTTTGAAGG+TGG | + | chr5_1:21960724-21960743 | Msa0723920:intron | 50.0% |
| TCCACCTTCAAACCAGGCTA+AGG | - | chr5_1:21960728-21960747 | None:intergenic | 50.0% | |
| ! | ATAGTTGGGTAGTGGCATGG+TGG | - | chr5_1:21960867-21960886 | None:intergenic | 50.0% |
| !! | TCACGTACACGTACTGGTTC+TGG | - | chr5_1:21960913-21960932 | None:intergenic | 50.0% |
| CCTGTTTCACGTACACGTAC+TGG | - | chr5_1:21960919-21960938 | None:intergenic | 50.0% | |
| CCAGTACGTGTACGTGAAAC+AGG | + | chr5_1:21960916-21960935 | Msa0723920:intron | 50.0% | |
| ! | TTGGTAAGTTCGCCGATTGC+GGG | - | chr5_1:21961021-21961040 | None:intergenic | 50.0% |
| ! | GTTGGTAAGTTCGCCGATTG+CGG | - | chr5_1:21961022-21961041 | None:intergenic | 50.0% |
| CAATCGGCGAACTTACCAAC+CGG | + | chr5_1:21961022-21961041 | Msa0723920:intron | 50.0% | |
| GATTCAGAGAGAGGAGATGC+CGG | - | chr5_1:21961044-21961063 | None:intergenic | 50.0% | |
| ! | GCCACTGATTATTGCATGCC+AGG | + | chr5_1:21961922-21961941 | Msa0723920:intron | 50.0% |
| ! | ACATCTTGCCACGCATTGAC+AGG | + | chr5_1:21962131-21962150 | Msa0723920:CDS | 50.0% |
| !! | AACGGTGCTGGTTACAGTGT+TGG | - | chr5_1:21962584-21962603 | None:intergenic | 50.0% |
| AACACTGTAACCAGCACCGT+TGG | + | chr5_1:21962583-21962602 | Msa0723920:CDS | 50.0% | |
| ! | GTAACCAGCACCGTTGGTAA+CGG | + | chr5_1:21962589-21962608 | Msa0723920:CDS | 50.0% |
| !! | GTTGGTAACGGTGTAGGGAT+AGG | + | chr5_1:21962601-21962620 | Msa0723920:CDS | 50.0% |
| ! | GAAGGTGACGGTGATGATGA+TGG | - | chr5_1:21962709-21962728 | None:intergenic | 50.0% |
| ! | ACTGGCACCGAATGACTCTT+TGG | + | chr5_1:21962787-21962806 | Msa0723920:exon | 50.0% |
| ! | GGGATAGTTGGGTAGTGGCA+TGG | - | chr5_1:21960870-21960889 | None:intergenic | 55.0% |
| ! | ATGCTTGGAGGAAGGTGCAG+AGG | + | chr5_1:21962453-21962472 | Msa0723920:CDS | 55.0% |
| GGGTTACATGACAACCAGGG+AGG | + | chr5_1:21962522-21962541 | Msa0723920:CDS | 55.0% | |
| GACAACCAGGGAGGTTAGAG+CGG | + | chr5_1:21962531-21962550 | Msa0723920:CDS | 55.0% | |
| ACAACCAGGGAGGTTAGAGC+GGG | + | chr5_1:21962532-21962551 | Msa0723920:CDS | 55.0% | |
| TACACCGTTACCAACGGTGC+TGG | - | chr5_1:21962596-21962615 | None:intergenic | 55.0% | |
| !! | AGCACCGTTGGTAACGGTGT+AGG | + | chr5_1:21962595-21962614 | Msa0723920:CDS | 55.0% |
| !! | GCACCGTTGGTAACGGTGTA+GGG | + | chr5_1:21962596-21962615 | Msa0723920:CDS | 55.0% |
| GGGTGATGTCGCGCTTCCAA+GGG | - | chr5_1:21960968-21960987 | None:intergenic | 60.0% | |
| TGGGTGATGTCGCGCTTCCA+AGG | - | chr5_1:21960969-21960988 | None:intergenic | 60.0% | |
| ATTGCAGTGGCGGTGGGTGA+AGG | - | chr5_1:21960998-21961017 | None:intergenic | 60.0% | |
| CGATTGCGGGATTGCAGTGG+CGG | - | chr5_1:21961008-21961027 | None:intergenic | 60.0% | |
| CGCCACTGCAATCCCGCAAT+CGG | + | chr5_1:21961006-21961025 | Msa0723920:intron | 60.0% | |
| CAGAGAGAGGAGATGCCGGT+TGG | - | chr5_1:21961040-21961059 | None:intergenic | 60.0% | |
| TGCGGGATTGCAGTGGCGGT+GGG | - | chr5_1:21961004-21961023 | None:intergenic | 65.0% | |
| TTGCGGGATTGCAGTGGCGG+TGG | - | chr5_1:21961005-21961024 | None:intergenic | 65.0% | |
| ! | CGCCGATTGCGGGATTGCAG+TGG | - | chr5_1:21961011-21961030 | None:intergenic | 65.0% |
| GCTTCCCGCTCTAACCTCCC+TGG | - | chr5_1:21962539-21962558 | None:intergenic | 65.0% | |
| TCCACACGTGGCTCCGCCAC+TGG | - | chr5_1:21960772-21960791 | None:intergenic | 70.0% | |
| TGGCGGAGCCACGTGTGGAC+TGG | + | chr5_1:21960773-21960792 | Msa0723920:intron | 70.0% | |
| GGCGGAGCCACGTGTGGACT+GGG | + | chr5_1:21960774-21960793 | Msa0723920:intron | 70.0% | |
| ! | GCGGAGCCACGTGTGGACTG+GGG | + | chr5_1:21960775-21960794 | Msa0723920:intron | 70.0% |
| !! | AGCCACGTGTGGACTGGGGC+AGG | + | chr5_1:21960779-21960798 | Msa0723920:intron | 70.0% |
| !! | GTGTGGACTGGGGCAGGCCA+TGG | + | chr5_1:21960785-21960804 | Msa0723920:intron | 70.0% |
| ! | CGGTGGGTGAAGGTGGCGGT+GGG | - | chr5_1:21960988-21961007 | None:intergenic | 70.0% |
| GTGGCGGTGGGTGAAGGTGG+CGG | - | chr5_1:21960992-21961011 | None:intergenic | 70.0% | |
| GCAGTGGCGGTGGGTGAAGG+TGG | - | chr5_1:21960995-21961014 | None:intergenic | 70.0% | |
| ! | GCCAGTGGCGGAGCCACGTG+TGG | + | chr5_1:21960768-21960787 | Msa0723920:intron | 75.0% |
| GGCCTGCCCCAGTCCACACG+TGG | - | chr5_1:21960784-21960803 | None:intergenic | 75.0% | |
| ! | GCGGTGGGTGAAGGTGGCGG+TGG | - | chr5_1:21960989-21961008 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21960129 | 21963130 | 21960129 | ID=Msa0723920;Name=Msa0723920 |
| chr5_1 | mRNA | 21960129 | 21963130 | 21960129 | ID=Msa0723920-mRNA-1;Parent=Msa0723920;Name=Msa0723920-mRNA-1;_AED=0.26;_eAED=0.26;_QI=115|1|1|1|0.8|0.66|6|329|236 |
| chr5_1 | exon | 21960129 | 21960367 | 21960129 | ID=Msa0723920-mRNA-1:exon:8335;Parent=Msa0723920-mRNA-1 |
| chr5_1 | exon | 21960547 | 21960632 | 21960547 | ID=Msa0723920-mRNA-1:exon:8336;Parent=Msa0723920-mRNA-1 |
| chr5_1 | exon | 21960731 | 21960761 | 21960731 | ID=Msa0723920-mRNA-1:exon:8337;Parent=Msa0723920-mRNA-1 |
| chr5_1 | exon | 21961929 | 21961978 | 21961929 | ID=Msa0723920-mRNA-1:exon:8338;Parent=Msa0723920-mRNA-1 |
| chr5_1 | exon | 21962082 | 21962152 | 21962082 | ID=Msa0723920-mRNA-1:exon:8339;Parent=Msa0723920-mRNA-1 |
| chr5_1 | exon | 21962453 | 21963130 | 21962453 | ID=Msa0723920-mRNA-1:exon:8340;Parent=Msa0723920-mRNA-1 |
| chr5_1 | five_prime_UTR | 21960129 | 21960243 | 21960129 | ID=Msa0723920-mRNA-1:five_prime_utr;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21960244 | 21960367 | 21960244 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21960547 | 21960632 | 21960547 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21960731 | 21960761 | 21960731 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21961929 | 21961978 | 21961929 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21962082 | 21962152 | 21962082 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | CDS | 21962453 | 21962801 | 21962453 | ID=Msa0723920-mRNA-1:cds;Parent=Msa0723920-mRNA-1 |
| chr5_1 | three_prime_UTR | 21962802 | 21963130 | 21962802 | ID=Msa0723920-mRNA-1:three_prime_utr;Parent=Msa0723920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
