AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724510 MtrunA17_Chr5g0415761 98.438 128 2 0 1 128 1 128 9.44e-93 263
Msa0724510 MtrunA17_Chr5g0415771 73.228 127 33 1 1 127 1 126 8.48e-55 167
Msa0724510 MtrunA17_Chr5g0415741 68.750 128 38 1 1 128 1 126 4.79e-54 165
Msa0724510 MtrunA17_Chr7g0216481 59.615 104 42 0 24 127 30 133 1.54e-44 142
Msa0724510 MtrunA17_Chr3g0142051 47.664 107 56 0 20 126 6 112 6.58e-37 122
Msa0724510 MtrunA17_Chr1g0155721 46.296 108 58 0 21 128 7 114 2.39e-36 120
Msa0724510 MtrunA17_Chr5g0404831 42.478 113 65 0 14 126 2 114 7.23e-35 117
Msa0724510 MtrunA17_Chr8g0393201 41.509 106 62 0 21 126 228 333 4.80e-28 105
Msa0724510 MtrunA17_Chr2g0280411 38.095 105 65 0 20 124 9 113 1.60e-23 88.2
Msa0724510 MtrunA17_Chr7g0245141 40.659 91 54 0 31 121 35 125 4.10e-22 85.1
Msa0724510 MtrunA17_Chr8g0334481 35.238 105 68 0 19 123 25 129 6.19e-22 84.7
Msa0724510 MtrunA17_Chr2g0319291 32.381 105 71 0 20 124 10 114 4.61e-21 82.0
Msa0724510 MtrunA17_Chr4g0042051 37.273 110 67 2 20 128 10 118 1.07e-20 80.9
Msa0724510 MtrunA17_Chr4g0052481 36.585 82 50 1 46 125 85 166 1.77e-16 71.2
Msa0724510 MtrunA17_Chr1g0201781 31.250 96 63 2 31 125 67 160 1.87e-16 71.2
Msa0724510 MtrunA17_Chr2g0317731 37.500 88 53 2 40 125 84 171 1.81e-14 66.2
Msa0724510 MtrunA17_Chr8g0360031 35.227 88 55 2 40 125 87 174 4.95e-14 65.1
Msa0724510 MtrunA17_Chr3g0125821 32.143 84 55 2 45 126 89 172 2.39e-13 63.2
Msa0724510 MtrunA17_Chr7g0249461 35.443 79 50 1 42 119 98 176 3.89e-13 62.8
Msa0724510 MtrunA17_Chr1g0211871 32.911 79 49 2 40 117 84 159 4.35e-12 60.1
Msa0724510 MtrunA17_Chr4g0044731 34.211 76 49 1 45 119 84 159 5.96e-12 59.3
Msa0724510 MtrunA17_Chr3g0142031 51.220 41 20 0 76 116 5 45 4.72e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724510 AT5G39950.1 46.923 130 64 1 1 125 1 130 1.37e-42 137
Msa0724510 AT1G59730.1 42.969 128 72 1 1 127 1 128 4.29e-38 125
Msa0724510 AT1G69880.1 49.074 108 55 0 19 126 36 143 1.94e-35 119
Msa0724510 AT5G42980.1 47.222 108 57 0 21 128 6 113 1.47e-34 116
Msa0724510 AT1G19730.1 49.533 107 53 1 21 126 7 113 1.85e-34 116
Msa0724510 AT3G51030.1 44.340 106 59 0 21 126 7 112 6.31e-34 114
Msa0724510 AT1G45145.1 44.860 107 59 0 20 126 5 111 8.00e-34 114
Msa0724510 AT3G17880.2 40.000 105 63 0 22 126 265 369 3.24e-25 98.2
Msa0724510 AT3G17880.1 39.623 106 64 0 21 126 271 376 4.11e-25 98.2
Msa0724510 AT3G56420.1 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0724510 AT3G56420.2 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0724510 AT3G56420.3 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0724510 AT1G11530.1 34.286 105 69 0 20 124 2 106 9.24e-21 81.3
Msa0724510 AT2G40790.2 39.130 92 56 0 30 121 50 141 1.22e-19 79.3
Msa0724510 AT2G40790.1 39.130 92 56 0 30 121 50 141 1.22e-19 79.3
Msa0724510 AT3G08710.2 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0724510 AT3G08710.3 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0724510 AT3G08710.1 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0724510 AT3G15360.1 37.363 91 49 3 40 125 102 189 4.51e-16 71.2
Msa0724510 AT1G43560.1 30.159 126 79 5 9 128 39 161 9.81e-16 69.7
Msa0724510 AT2G35010.2 38.554 83 47 2 46 125 110 191 1.69e-14 67.0
Msa0724510 AT2G35010.1 38.554 83 47 2 46 125 110 191 1.69e-14 67.0
Msa0724510 AT1G76760.1 33.333 75 49 1 41 114 80 154 2.28e-14 66.2
Msa0724510 AT4G03520.1 34.940 83 52 2 45 125 101 183 8.47e-14 65.1
Msa0724510 AT1G31020.1 30.556 108 73 1 20 125 49 156 1.00e-13 64.3
Msa0724510 AT1G03680.1 35.802 81 50 2 47 125 97 177 2.42e-13 63.5
Msa0724510 AT3G02730.1 35.632 87 55 1 43 128 88 174 2.97e-13 63.5
Msa0724510 AT5G16400.1 34.091 88 57 1 42 128 97 184 4.07e-13 63.2
Msa0724510 AT1G52990.1 31.522 92 61 2 36 126 222 312 7.87e-12 61.2
Msa0724510 AT4G04950.1 29.787 94 66 0 32 125 11 104 2.59e-11 60.1
Msa0724510 AT4G32580.1 27.660 94 68 0 32 125 11 104 7.96e-11 56.6
Msa0724510 AT2G15570.1 25.843 89 65 1 32 119 74 162 8.91e-11 56.6
Msa0724510 AT2G15570.2 25.843 89 65 1 32 119 75 163 9.63e-11 56.6

Find 29 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAGCTTGTTAGTTTCTT+TGG 0.210380 5_1:+23096931 None:intergenic
CCTTCCATTCCACTGCTAAA+TGG 0.240816 5_1:-23096973 Msa0724510:CDS
TAAGATGGTAATTGAATTTA+CGG 0.284078 5_1:-23096816 Msa0724510:intron
GATTGACGTGGATGAATTAA+TGG 0.293121 5_1:-23096711 Msa0724510:intron
GCAGCAAAATCTTGAATGAT+TGG 0.305816 5_1:+23096761 None:intergenic
CATCATAAAGAACATGAATA+AGG 0.345057 5_1:-23096026 Msa0724510:three_prime_UTR
TTGATCACATGCAAGATTAG+AGG 0.348865 5_1:+23096061 None:intergenic
AAAGTTGTTGACAAGGTTGT+AGG 0.419387 5_1:-23096134 Msa0724510:CDS
CAGCTTGTTAGTTTCTTTGG+AGG 0.429788 5_1:+23096934 None:intergenic
TTCTAATCTTGTTTGTATGA+TGG 0.429929 5_1:+23097113 None:intergenic
TTCTTCATCAGTATGAATGT+TGG 0.495900 5_1:+23096161 None:intergenic
TTCTTGTCTAAGTCCCCAAA+AGG 0.530379 5_1:-23097078 Msa0724510:five_prime_UTR
CCTTCCATTTAGCAGTGGAA+TGG 0.530623 5_1:+23096969 None:intergenic
CTCCAAAGAAACTAACAAGC+TGG 0.546462 5_1:-23096933 Msa0724510:intron
ACATGTAAATGTGGTATGAA+AGG 0.548865 5_1:+23095983 None:intergenic
GTGTGGACCTTGCAAATACA+TGG 0.552168 5_1:-23096786 Msa0724510:CDS
CCATTTAGCAGTGGAATGGA+AGG 0.552428 5_1:+23096973 None:intergenic
CCATTCCACTGCTAAATGGA+AGG 0.553763 5_1:-23096969 Msa0724510:CDS
ACATTCATACTGATGAAGAA+AGG 0.574346 5_1:-23096158 Msa0724510:CDS
ATTGGATCCATGTATTTGCA+AGG 0.586486 5_1:+23096779 None:intergenic
GAATTTACGGCTGCATGGTG+TGG 0.600755 5_1:-23096803 Msa0724510:CDS
GAAAGGAAAAGTTGTTGACA+AGG 0.605147 5_1:-23096141 Msa0724510:CDS
GGGAGGCAATTTATCCAACA+TGG 0.609050 5_1:-23097041 Msa0724510:CDS
AGTCATACAACATGTAAATG+TGG 0.613036 5_1:+23095974 None:intergenic
AATTTATCCAACATGGAGCA+TGG 0.613422 5_1:-23097034 Msa0724510:CDS
ATAAGCCTTCCATTTAGCAG+TGG 0.613671 5_1:+23096964 None:intergenic
TGTATGACCATGCTCCATGT+TGG 0.633501 5_1:+23097027 None:intergenic
AGATTTCATCAAGATTGACG+TGG 0.662014 5_1:-23096723 Msa0724510:CDS
TAATTGAATTTACGGCTGCA+TGG 0.665704 5_1:-23096808 Msa0724510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTTTTTTTCCTTTT+GGG + chr5_1:23095884-23095903 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAATAAT+GGG - chr5_1:23095884-23095903 Msa0724510:three_prime_UTR 10.0%
!!! ATTATTTTTTTTTTCCTTTT+GGG + chr5_1:23095884-23095903 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAATAAT+GGG - chr5_1:23095884-23095903 Msa0724510:three_prime_UTR 10.0%
!!! TTATTTTTTTTTTCCTTTTG+GGG + chr5_1:23095883-23095902 None:intergenic 15.0%
!!! CATTATTTTTTTTTTCCTTT+TGG + chr5_1:23095885-23095904 None:intergenic 15.0%
!! CAAAAGGAAAAAAAAAATAA+TGG - chr5_1:23095883-23095902 Msa0724510:three_prime_UTR 15.0%
!! ATATTATATCTCCTAATATA+AGG - chr5_1:23096298-23096317 Msa0724510:intron 15.0%
!! TATTATATCTCCTAATATAA+GGG - chr5_1:23096299-23096318 Msa0724510:intron 15.0%
!! ATCTTTATATAATGTATAGA+TGG + chr5_1:23096332-23096351 None:intergenic 15.0%
!!! GAATATTCATACATTTTTTT+GGG + chr5_1:23096471-23096490 None:intergenic 15.0%
!!! ATTATTTTTCTATTGTAAAC+AGG - chr5_1:23096729-23096748 Msa0724510:CDS 15.0%
!!! TTATTTTTCTATTGTAAACA+GGG - chr5_1:23096730-23096749 Msa0724510:CDS 15.0%
!!! TTATTTTTTTTTTCCTTTTG+GGG + chr5_1:23095883-23095902 None:intergenic 15.0%
!!! CATTATTTTTTTTTTCCTTT+TGG + chr5_1:23095885-23095904 None:intergenic 15.0%
!! CAAAAGGAAAAAAAAAATAA+TGG - chr5_1:23095883-23095902 Msa0724510:three_prime_UTR 15.0%
!! ATATTATATCTCCTAATATA+AGG - chr5_1:23096298-23096317 Msa0724510:intron 15.0%
!! TATTATATCTCCTAATATAA+GGG - chr5_1:23096299-23096318 Msa0724510:intron 15.0%
!! ATCTTTATATAATGTATAGA+TGG + chr5_1:23096332-23096351 None:intergenic 15.0%
!!! GAATATTCATACATTTTTTT+GGG + chr5_1:23096471-23096490 None:intergenic 15.0%
!!! ATTATTTTTCTATTGTAAAC+AGG - chr5_1:23096729-23096748 Msa0724510:CDS 15.0%
!!! TTATTTTTCTATTGTAAACA+GGG - chr5_1:23096730-23096749 Msa0724510:CDS 15.0%
!!! TTTTGTTTTTTTAACTCTCA+TGG - chr5_1:23096086-23096105 Msa0724510:CDS 20.0%
!!! TTTGTTTTTTTAACTCTCAT+GGG - chr5_1:23096087-23096106 Msa0724510:CDS 20.0%
!! TAAGATGGTAATTGAATTTA+CGG - chr5_1:23096129-23096148 Msa0724510:CDS 20.0%
!!! GTATTTTATGTGATTTACTA+TGG - chr5_1:23096415-23096434 Msa0724510:intron 20.0%
!!! GGAATATTCATACATTTTTT+TGG + chr5_1:23096472-23096491 None:intergenic 20.0%
!!! ATACTGTTAAGTTGAATTAA+GGG + chr5_1:23096542-23096561 None:intergenic 20.0%
!!! AATACTGTTAAGTTGAATTA+AGG + chr5_1:23096543-23096562 None:intergenic 20.0%
!! GAAATGAGATTCATATTTAA+AGG - chr5_1:23096608-23096627 Msa0724510:intron 20.0%
!!! AAAGGTGAACTTTTTTTTAA+AGG - chr5_1:23096626-23096645 Msa0724510:intron 20.0%
!!! AAGGTGAACTTTTTTTTAAA+GGG - chr5_1:23096627-23096646 Msa0724510:intron 20.0%
!!! ATTTGAAATGAGACTTTTTT+AGG - chr5_1:23096691-23096710 Msa0724510:intron 20.0%
!!! TTTTGTTTTTTTAACTCTCA+TGG - chr5_1:23096086-23096105 Msa0724510:CDS 20.0%
!!! TTTGTTTTTTTAACTCTCAT+GGG - chr5_1:23096087-23096106 Msa0724510:CDS 20.0%
!! TAAGATGGTAATTGAATTTA+CGG - chr5_1:23096129-23096148 Msa0724510:CDS 20.0%
!!! GTATTTTATGTGATTTACTA+TGG - chr5_1:23096415-23096434 Msa0724510:intron 20.0%
!!! GGAATATTCATACATTTTTT+TGG + chr5_1:23096472-23096491 None:intergenic 20.0%
!!! ATACTGTTAAGTTGAATTAA+GGG + chr5_1:23096542-23096561 None:intergenic 20.0%
!!! AATACTGTTAAGTTGAATTA+AGG + chr5_1:23096543-23096562 None:intergenic 20.0%
!! GAAATGAGATTCATATTTAA+AGG - chr5_1:23096608-23096627 Msa0724510:intron 20.0%
!!! AAAGGTGAACTTTTTTTTAA+AGG - chr5_1:23096626-23096645 Msa0724510:intron 20.0%
!!! AAGGTGAACTTTTTTTTAAA+GGG - chr5_1:23096627-23096646 Msa0724510:intron 20.0%
!!! ATTTGAAATGAGACTTTTTT+AGG - chr5_1:23096691-23096710 Msa0724510:intron 20.0%
!! TTCTAATCTTGTTTGTATGA+TGG + chr5_1:23095835-23095854 None:intergenic 25.0%
!! AGGAAAAAAAAAATAATGGG+AGG - chr5_1:23095887-23095906 Msa0724510:three_prime_UTR 25.0%
!!! TGTATTTTTTTGGCTTAAGA+TGG - chr5_1:23096114-23096133 Msa0724510:CDS 25.0%
! TCTTAATCATCATGTTTGTA+TGG + chr5_1:23096448-23096467 None:intergenic 25.0%
!!! AGGTGAACTTTTTTTTAAAG+GGG - chr5_1:23096628-23096647 Msa0724510:intron 25.0%
! CATCATAAAGAACATGAATA+AGG - chr5_1:23096919-23096938 Msa0724510:intron 25.0%
!!! TGAAACTTTTTCTTTCCAAA+TGG - chr5_1:23096999-23097018 Msa0724510:CDS 25.0%
!! TTCTAATCTTGTTTGTATGA+TGG + chr5_1:23095835-23095854 None:intergenic 25.0%
!! AGGAAAAAAAAAATAATGGG+AGG - chr5_1:23095887-23095906 Msa0724510:three_prime_UTR 25.0%
!!! TGTATTTTTTTGGCTTAAGA+TGG - chr5_1:23096114-23096133 Msa0724510:CDS 25.0%
! TCTTAATCATCATGTTTGTA+TGG + chr5_1:23096448-23096467 None:intergenic 25.0%
!!! AGGTGAACTTTTTTTTAAAG+GGG - chr5_1:23096628-23096647 Msa0724510:intron 25.0%
! CATCATAAAGAACATGAATA+AGG - chr5_1:23096919-23096938 Msa0724510:intron 25.0%
!!! TGAAACTTTTTCTTTCCAAA+TGG - chr5_1:23096999-23097018 Msa0724510:CDS 25.0%
! TACACGCAAATGAGTATTTT+AGG + chr5_1:23096493-23096512 None:intergenic 30.0%
GAATTAAGGGATATAAAAGC+CGG + chr5_1:23096529-23096548 None:intergenic 30.0%
TTCTTCATCAGTATGAATGT+TGG + chr5_1:23096787-23096806 None:intergenic 30.0%
ACATTCATACTGATGAAGAA+AGG - chr5_1:23096787-23096806 Msa0724510:CDS 30.0%
ACATGTAAATGTGGTATGAA+AGG + chr5_1:23096965-23096984 None:intergenic 30.0%
AGTCATACAACATGTAAATG+TGG + chr5_1:23096974-23096993 None:intergenic 30.0%
! TACACGCAAATGAGTATTTT+AGG + chr5_1:23096493-23096512 None:intergenic 30.0%
GAATTAAGGGATATAAAAGC+CGG + chr5_1:23096529-23096548 None:intergenic 30.0%
TTCTTCATCAGTATGAATGT+TGG + chr5_1:23096787-23096806 None:intergenic 30.0%
ACATTCATACTGATGAAGAA+AGG - chr5_1:23096787-23096806 Msa0724510:CDS 30.0%
ACATGTAAATGTGGTATGAA+AGG + chr5_1:23096965-23096984 None:intergenic 30.0%
AGTCATACAACATGTAAATG+TGG + chr5_1:23096974-23096993 None:intergenic 30.0%
AATTTATCCAACATGGAGCA+TGG - chr5_1:23095911-23095930 Msa0724510:three_prime_UTR 35.0%
!!! CATGGGATCGTGTATTTTTT+TGG - chr5_1:23096104-23096123 Msa0724510:CDS 35.0%
TAATTGAATTTACGGCTGCA+TGG - chr5_1:23096137-23096156 Msa0724510:CDS 35.0%
ATTGGATCCATGTATTTGCA+AGG + chr5_1:23096169-23096188 None:intergenic 35.0%
GCAGCAAAATCTTGAATGAT+TGG + chr5_1:23096187-23096206 None:intergenic 35.0%
AGATTTCATCAAGATTGACG+TGG - chr5_1:23096222-23096241 Msa0724510:intron 35.0%
GATTGACGTGGATGAATTAA+TGG - chr5_1:23096234-23096253 Msa0724510:intron 35.0%
CGTGTAAATGTATCAAACTC+CGG - chr5_1:23096507-23096526 Msa0724510:intron 35.0%
GAAAGGAAAAGTTGTTGACA+AGG - chr5_1:23096804-23096823 Msa0724510:CDS 35.0%
AAAGTTGTTGACAAGGTTGT+AGG - chr5_1:23096811-23096830 Msa0724510:CDS 35.0%
TTGATCACATGCAAGATTAG+AGG + chr5_1:23096887-23096906 None:intergenic 35.0%
TTTGCACGTCAAAAACCATT+TGG + chr5_1:23097017-23097036 None:intergenic 35.0%
AATTTATCCAACATGGAGCA+TGG - chr5_1:23095911-23095930 Msa0724510:three_prime_UTR 35.0%
!!! CATGGGATCGTGTATTTTTT+TGG - chr5_1:23096104-23096123 Msa0724510:CDS 35.0%
TAATTGAATTTACGGCTGCA+TGG - chr5_1:23096137-23096156 Msa0724510:CDS 35.0%
ATTGGATCCATGTATTTGCA+AGG + chr5_1:23096169-23096188 None:intergenic 35.0%
GCAGCAAAATCTTGAATGAT+TGG + chr5_1:23096187-23096206 None:intergenic 35.0%
AGATTTCATCAAGATTGACG+TGG - chr5_1:23096222-23096241 Msa0724510:intron 35.0%
GATTGACGTGGATGAATTAA+TGG - chr5_1:23096234-23096253 Msa0724510:intron 35.0%
CGTGTAAATGTATCAAACTC+CGG - chr5_1:23096507-23096526 Msa0724510:intron 35.0%
GAAAGGAAAAGTTGTTGACA+AGG - chr5_1:23096804-23096823 Msa0724510:CDS 35.0%
AAAGTTGTTGACAAGGTTGT+AGG - chr5_1:23096811-23096830 Msa0724510:CDS 35.0%
TTGATCACATGCAAGATTAG+AGG + chr5_1:23096887-23096906 None:intergenic 35.0%
TTTGCACGTCAAAAACCATT+TGG + chr5_1:23097017-23097036 None:intergenic 35.0%
TTCTTGTCTAAGTCCCCAAA+AGG - chr5_1:23095867-23095886 Msa0724510:three_prime_UTR 40.0%
ATAAGCCTTCCATTTAGCAG+TGG + chr5_1:23095984-23096003 None:intergenic 40.0%
!! CAGCTTGTTAGTTTCTTTGG+AGG + chr5_1:23096014-23096033 None:intergenic 40.0%
CTCCAAAGAAACTAACAAGC+TGG - chr5_1:23096012-23096031 Msa0724510:three_prime_UTR 40.0%
!! CACCAGCTTGTTAGTTTCTT+TGG + chr5_1:23096017-23096036 None:intergenic 40.0%
TGGTGTGTTGCCCTTATATT+AGG + chr5_1:23096312-23096331 None:intergenic 40.0%
CAAGGTTGTAGGAGCAAAAA+AGG - chr5_1:23096822-23096841 Msa0724510:intron 40.0%
TTCTTGTCTAAGTCCCCAAA+AGG - chr5_1:23095867-23095886 Msa0724510:three_prime_UTR 40.0%
ATAAGCCTTCCATTTAGCAG+TGG + chr5_1:23095984-23096003 None:intergenic 40.0%
!! CAGCTTGTTAGTTTCTTTGG+AGG + chr5_1:23096014-23096033 None:intergenic 40.0%
CTCCAAAGAAACTAACAAGC+TGG - chr5_1:23096012-23096031 Msa0724510:three_prime_UTR 40.0%
!! CACCAGCTTGTTAGTTTCTT+TGG + chr5_1:23096017-23096036 None:intergenic 40.0%
TGGTGTGTTGCCCTTATATT+AGG + chr5_1:23096312-23096331 None:intergenic 40.0%
CAAGGTTGTAGGAGCAAAAA+AGG - chr5_1:23096822-23096841 Msa0724510:intron 40.0%
GGGAGGCAATTTATCCAACA+TGG - chr5_1:23095904-23095923 Msa0724510:three_prime_UTR 45.0%
TGTATGACCATGCTCCATGT+TGG + chr5_1:23095921-23095940 None:intergenic 45.0%
CCATTTAGCAGTGGAATGGA+AGG + chr5_1:23095975-23095994 None:intergenic 45.0%
CCTTCCATTCCACTGCTAAA+TGG - chr5_1:23095972-23095991 Msa0724510:three_prime_UTR 45.0%
CCTTCCATTTAGCAGTGGAA+TGG + chr5_1:23095979-23095998 None:intergenic 45.0%
CCATTCCACTGCTAAATGGA+AGG - chr5_1:23095976-23095995 Msa0724510:three_prime_UTR 45.0%
GTGTGGACCTTGCAAATACA+TGG - chr5_1:23096159-23096178 Msa0724510:CDS 45.0%
GGGAGGCAATTTATCCAACA+TGG - chr5_1:23095904-23095923 Msa0724510:three_prime_UTR 45.0%
TGTATGACCATGCTCCATGT+TGG + chr5_1:23095921-23095940 None:intergenic 45.0%
CCATTTAGCAGTGGAATGGA+AGG + chr5_1:23095975-23095994 None:intergenic 45.0%
CCTTCCATTCCACTGCTAAA+TGG - chr5_1:23095972-23095991 Msa0724510:three_prime_UTR 45.0%
CCTTCCATTTAGCAGTGGAA+TGG + chr5_1:23095979-23095998 None:intergenic 45.0%
CCATTCCACTGCTAAATGGA+AGG - chr5_1:23095976-23095995 Msa0724510:three_prime_UTR 45.0%
GTGTGGACCTTGCAAATACA+TGG - chr5_1:23096159-23096178 Msa0724510:CDS 45.0%
GAATTTACGGCTGCATGGTG+TGG - chr5_1:23096142-23096161 Msa0724510:CDS 50.0%
GAATTTACGGCTGCATGGTG+TGG - chr5_1:23096142-23096161 Msa0724510:CDS 50.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 23095830 23097137 23095830 ID=Msa0724510;Name=Msa0724510
chr5_1 mRNA 23095830 23097137 23095830 ID=Msa0724510-mRNA-1;Parent=Msa0724510;Name=Msa0724510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=72|1|1|1|1|1|3|255|128
chr5_1 exon 23095830 23096216 23095830 ID=Msa0724510-mRNA-1:exon:8672;Parent=Msa0724510-mRNA-1
chr5_1 exon 23096712 23096834 23096712 ID=Msa0724510-mRNA-1:exon:8671;Parent=Msa0724510-mRNA-1
chr5_1 exon 23096934 23097137 23096934 ID=Msa0724510-mRNA-1:exon:8670;Parent=Msa0724510-mRNA-1
chr5_1 five_prime_UTR 23097066 23097137 23097066 ID=Msa0724510-mRNA-1:five_prime_utr;Parent=Msa0724510-mRNA-1
chr5_1 CDS 23096934 23097065 23096934 ID=Msa0724510-mRNA-1:cds;Parent=Msa0724510-mRNA-1
chr5_1 CDS 23096712 23096834 23096712 ID=Msa0724510-mRNA-1:cds;Parent=Msa0724510-mRNA-1
chr5_1 CDS 23096085 23096216 23096085 ID=Msa0724510-mRNA-1:cds;Parent=Msa0724510-mRNA-1
chr5_1 three_prime_UTR 23095830 23096084 23095830 ID=Msa0724510-mRNA-1:three_prime_utr;Parent=Msa0724510-mRNA-1
Gene Sequence

>Msa0724510

ATGGGAGGCAATTTATCCAACATGGAGCATGGTCATACATCAGCAAAGTCATTATCATCTCACATTCTTACCTTCCATTCCACTGCTAAATGGAAGGCTTATTTTGATGCCTCCAAAGAAACTAACAAGCTGATGGTAATTGAATTTACGGCTGCATGGTGTGGACCTTGCAAATACATGGATCCAATCATTCAAGATTTTGCTGCAAAATACATAAAAGTAGATTTCATCAAGATTGACGTGGATGAATTAATGGGTGTCTCTCAAGAGTTTCAAGTGCAAGCAATGCCAACATTCATACTGATGAAGAAAGGAAAAGTTGTTGACAAGGTTGTAGGAGCAAAAAAGGAAGAGCTTGAAAAGTTGATTGAGAAGCATCAAAACTAA
Protein sequence

>Msa0724510

MGGNLSNMEHGHTSAKSLSSHILTFHSTAKWKAYFDASKETNKLMVIEFTAAWCGPCKYMDPIIQDFAAKYIKVDFIKIDVDELMGVSQEFQVQAMPTFILMKKGKVVDKVVGAKKEELEKLIEKHQN*