Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844360 | XP_003613548.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.03e-88 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844360 | sp|Q38879|TRXH2_ARATH | 46.923 | 130 | 64 | 1 | 1 | 125 | 1 | 130 | 1.35e-41 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844360 | D8L5E1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 4.90e-89 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0844360 | 0.800392 | 1.472673e-48 | -8.615850e-47 |
| Msa0013270 | Msa0844360 | 0.812320 | 4.498864e-51 | -8.615850e-47 |
| Msa0045810 | Msa0844360 | 0.831672 | 1.462023e-55 | -8.615850e-47 |
| Msa0046200 | Msa0844360 | 0.826712 | 2.334418e-54 | -8.615850e-47 |
| Msa0724510 | Msa0844360 | 0.811902 | 5.548505e-51 | -8.615850e-47 |
| Msa0765050 | Msa0844360 | 0.908422 | 1.739762e-81 | -8.615850e-47 |
| Msa0838620 | Msa0844360 | -0.812093 | 5.043325e-51 | -8.615850e-47 |
| Msa0139500 | Msa0844360 | 0.827295 | 1.692508e-54 | -8.615850e-47 |
| Msa0197170 | Msa0844360 | 0.808556 | 2.922309e-50 | -8.615850e-47 |
| Msa0206370 | Msa0844360 | 0.806996 | 6.272065e-50 | -8.615850e-47 |
| Msa0207250 | Msa0844360 | -0.802289 | 6.020852e-49 | -8.615850e-47 |
| Msa0375860 | Msa0844360 | 0.801099 | 1.056147e-48 | -8.615850e-47 |
| Msa0437480 | Msa0844360 | 0.819624 | 1.053330e-52 | -8.615850e-47 |
| Msa0238950 | Msa0844360 | 0.800002 | 1.767700e-48 | -8.615850e-47 |
| Msa0308750 | Msa0844360 | 0.838944 | 2.127864e-57 | -8.615850e-47 |
| Msa0316740 | Msa0844360 | 0.838633 | 2.561750e-57 | -8.615850e-47 |
| Msa0324710 | Msa0844360 | 0.808253 | 3.390792e-50 | -8.615850e-47 |
| Msa0354840 | Msa0844360 | 0.830517 | 2.808453e-55 | -8.615850e-47 |
| Msa0484210 | Msa0844360 | -0.800930 | 1.143851e-48 | -8.615850e-47 |
| Msa0523720 | Msa0844360 | 0.810578 | 1.075053e-50 | -8.615850e-47 |
| Msa0567330 | Msa0844360 | 0.811358 | 7.287153e-51 | -8.615850e-47 |
| Msa0567570 | Msa0844360 | 0.802880 | 4.548516e-49 | -8.615850e-47 |
| Msa0576320 | Msa0844360 | 0.810983 | 8.787668e-51 | -8.615850e-47 |
| Msa0844360 | Msa0857270 | 0.803853 | 2.859112e-49 | -8.615850e-47 |
| Msa0844360 | Msa0880910 | 0.837013 | 6.676335e-57 | -8.615850e-47 |
| Msa0844360 | Msa0930770 | 0.812632 | 3.844905e-51 | -8.615850e-47 |
| Msa0844360 | Msa0967780 | 0.842530 | 2.443817e-58 | -8.615850e-47 |
| Msa0844360 | Msa1002820 | 0.800010 | 1.761607e-48 | -8.615850e-47 |
| Msa0844360 | Msa1015560 | 0.802924 | 4.452372e-49 | -8.615850e-47 |
| Msa0844360 | Msa1029820 | 0.803263 | 3.789836e-49 | -8.615850e-47 |
| Msa0844360 | Msa1044250 | 0.832183 | 1.093484e-55 | -8.615850e-47 |
| Msa0844360 | Msa1068940 | 0.806540 | 7.828682e-50 | -8.615850e-47 |
| Msa0844360 | Msa1081970 | 0.800996 | 1.108966e-48 | -8.615850e-47 |
| Msa0844360 | Msa1106590 | 0.811217 | 7.819992e-51 | -8.615850e-47 |
| Msa0844360 | Msa1149910 | 0.808297 | 3.319347e-50 | -8.615850e-47 |
| Msa0844360 | Msa1156710 | 0.803032 | 4.231046e-49 | -8.615850e-47 |
| Msa0844360 | Msa1192360 | 0.824860 | 6.418814e-54 | -8.615850e-47 |
| Msa0844360 | Msa1201760 | 0.806832 | 6.793364e-50 | -8.615850e-47 |
| Msa0844360 | Msa1202800 | 0.808285 | 3.339268e-50 | -8.615850e-47 |
| Msa0844360 | Msa1206920 | 0.807668 | 4.517088e-50 | -8.615850e-47 |
| Msa0844360 | Msa1217890 | 0.812452 | 4.208987e-51 | -8.615850e-47 |
| Msa0844360 | Msa1246830 | 0.807825 | 4.182486e-50 | -8.615850e-47 |
| Msa0844360 | Msa1255710 | 0.808638 | 2.806443e-50 | -8.615850e-47 |
| Msa0844360 | Msa1257200 | 0.813573 | 2.390800e-51 | -8.615850e-47 |
| Msa0844360 | Msa1288070 | 0.815466 | 9.111673e-52 | -8.615850e-47 |
| Msa0844360 | Msa1294770 | 0.806114 | 9.626389e-50 | -8.615850e-47 |
| Msa0844360 | Msa1328280 | 0.817081 | 3.966642e-52 | -8.615850e-47 |
| Msa0844360 | Msa1407810 | 0.806853 | 6.721641e-50 | -8.615850e-47 |
| Msa0844360 | Msa1433360 | 0.804788 | 1.825929e-49 | -8.615850e-47 |
| Msa0844360 | Msa1437780 | 0.807278 | 5.464849e-50 | -8.615850e-47 |
| Msa0844360 | Msa1438510 | 0.807123 | 5.895380e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844360 | MtrunA17_Chr5g0415761 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 9.44e-93 | 263 |
| Msa0844360 | MtrunA17_Chr5g0415771 | 73.228 | 127 | 33 | 1 | 1 | 127 | 1 | 126 | 8.48e-55 | 167 |
| Msa0844360 | MtrunA17_Chr5g0415741 | 68.750 | 128 | 38 | 1 | 1 | 128 | 1 | 126 | 4.79e-54 | 165 |
| Msa0844360 | MtrunA17_Chr7g0216481 | 59.615 | 104 | 42 | 0 | 24 | 127 | 30 | 133 | 1.54e-44 | 142 |
| Msa0844360 | MtrunA17_Chr3g0142051 | 47.664 | 107 | 56 | 0 | 20 | 126 | 6 | 112 | 6.58e-37 | 122 |
| Msa0844360 | MtrunA17_Chr1g0155721 | 46.296 | 108 | 58 | 0 | 21 | 128 | 7 | 114 | 2.39e-36 | 120 |
| Msa0844360 | MtrunA17_Chr5g0404831 | 42.478 | 113 | 65 | 0 | 14 | 126 | 2 | 114 | 7.23e-35 | 117 |
| Msa0844360 | MtrunA17_Chr8g0393201 | 41.509 | 106 | 62 | 0 | 21 | 126 | 228 | 333 | 4.80e-28 | 105 |
| Msa0844360 | MtrunA17_Chr2g0280411 | 38.095 | 105 | 65 | 0 | 20 | 124 | 9 | 113 | 1.60e-23 | 88.2 |
| Msa0844360 | MtrunA17_Chr7g0245141 | 40.659 | 91 | 54 | 0 | 31 | 121 | 35 | 125 | 4.10e-22 | 85.1 |
| Msa0844360 | MtrunA17_Chr8g0334481 | 35.238 | 105 | 68 | 0 | 19 | 123 | 25 | 129 | 6.19e-22 | 84.7 |
| Msa0844360 | MtrunA17_Chr2g0319291 | 32.381 | 105 | 71 | 0 | 20 | 124 | 10 | 114 | 4.61e-21 | 82.0 |
| Msa0844360 | MtrunA17_Chr4g0042051 | 37.273 | 110 | 67 | 2 | 20 | 128 | 10 | 118 | 1.07e-20 | 80.9 |
| Msa0844360 | MtrunA17_Chr4g0052481 | 36.585 | 82 | 50 | 1 | 46 | 125 | 85 | 166 | 1.77e-16 | 71.2 |
| Msa0844360 | MtrunA17_Chr1g0201781 | 31.250 | 96 | 63 | 2 | 31 | 125 | 67 | 160 | 1.87e-16 | 71.2 |
| Msa0844360 | MtrunA17_Chr2g0317731 | 37.500 | 88 | 53 | 2 | 40 | 125 | 84 | 171 | 1.81e-14 | 66.2 |
| Msa0844360 | MtrunA17_Chr8g0360031 | 35.227 | 88 | 55 | 2 | 40 | 125 | 87 | 174 | 4.95e-14 | 65.1 |
| Msa0844360 | MtrunA17_Chr3g0125821 | 32.143 | 84 | 55 | 2 | 45 | 126 | 89 | 172 | 2.39e-13 | 63.2 |
| Msa0844360 | MtrunA17_Chr7g0249461 | 35.443 | 79 | 50 | 1 | 42 | 119 | 98 | 176 | 3.89e-13 | 62.8 |
| Msa0844360 | MtrunA17_Chr1g0211871 | 32.911 | 79 | 49 | 2 | 40 | 117 | 84 | 159 | 4.35e-12 | 60.1 |
| Msa0844360 | MtrunA17_Chr4g0044731 | 34.211 | 76 | 49 | 1 | 45 | 119 | 84 | 159 | 5.96e-12 | 59.3 |
| Msa0844360 | MtrunA17_Chr3g0142031 | 51.220 | 41 | 20 | 0 | 76 | 116 | 5 | 45 | 4.72e-11 | 54.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844360 | AT5G39950.1 | 46.923 | 130 | 64 | 1 | 1 | 125 | 1 | 130 | 1.37e-42 | 137 |
| Msa0844360 | AT1G59730.1 | 42.969 | 128 | 72 | 1 | 1 | 127 | 1 | 128 | 4.29e-38 | 125 |
| Msa0844360 | AT1G69880.1 | 49.074 | 108 | 55 | 0 | 19 | 126 | 36 | 143 | 1.94e-35 | 119 |
| Msa0844360 | AT5G42980.1 | 47.222 | 108 | 57 | 0 | 21 | 128 | 6 | 113 | 1.47e-34 | 116 |
| Msa0844360 | AT1G19730.1 | 49.533 | 107 | 53 | 1 | 21 | 126 | 7 | 113 | 1.85e-34 | 116 |
| Msa0844360 | AT3G51030.1 | 44.340 | 106 | 59 | 0 | 21 | 126 | 7 | 112 | 6.31e-34 | 114 |
| Msa0844360 | AT1G45145.1 | 44.860 | 107 | 59 | 0 | 20 | 126 | 5 | 111 | 8.00e-34 | 114 |
| Msa0844360 | AT3G17880.2 | 40.000 | 105 | 63 | 0 | 22 | 126 | 265 | 369 | 3.24e-25 | 98.2 |
| Msa0844360 | AT3G17880.1 | 39.623 | 106 | 64 | 0 | 21 | 126 | 271 | 376 | 4.11e-25 | 98.2 |
| Msa0844360 | AT3G56420.1 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| Msa0844360 | AT3G56420.2 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| Msa0844360 | AT3G56420.3 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| Msa0844360 | AT1G11530.1 | 34.286 | 105 | 69 | 0 | 20 | 124 | 2 | 106 | 9.24e-21 | 81.3 |
| Msa0844360 | AT2G40790.2 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.22e-19 | 79.3 |
| Msa0844360 | AT2G40790.1 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.22e-19 | 79.3 |
| Msa0844360 | AT3G08710.2 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| Msa0844360 | AT3G08710.3 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| Msa0844360 | AT3G08710.1 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| Msa0844360 | AT3G15360.1 | 37.363 | 91 | 49 | 3 | 40 | 125 | 102 | 189 | 4.51e-16 | 71.2 |
| Msa0844360 | AT1G43560.1 | 30.159 | 126 | 79 | 5 | 9 | 128 | 39 | 161 | 9.81e-16 | 69.7 |
| Msa0844360 | AT2G35010.2 | 38.554 | 83 | 47 | 2 | 46 | 125 | 110 | 191 | 1.69e-14 | 67.0 |
| Msa0844360 | AT2G35010.1 | 38.554 | 83 | 47 | 2 | 46 | 125 | 110 | 191 | 1.69e-14 | 67.0 |
| Msa0844360 | AT1G76760.1 | 33.333 | 75 | 49 | 1 | 41 | 114 | 80 | 154 | 2.28e-14 | 66.2 |
| Msa0844360 | AT4G03520.1 | 34.940 | 83 | 52 | 2 | 45 | 125 | 101 | 183 | 8.47e-14 | 65.1 |
| Msa0844360 | AT1G31020.1 | 30.556 | 108 | 73 | 1 | 20 | 125 | 49 | 156 | 1.00e-13 | 64.3 |
| Msa0844360 | AT1G03680.1 | 35.802 | 81 | 50 | 2 | 47 | 125 | 97 | 177 | 2.42e-13 | 63.5 |
| Msa0844360 | AT3G02730.1 | 35.632 | 87 | 55 | 1 | 43 | 128 | 88 | 174 | 2.97e-13 | 63.5 |
| Msa0844360 | AT5G16400.1 | 34.091 | 88 | 57 | 1 | 42 | 128 | 97 | 184 | 4.07e-13 | 63.2 |
| Msa0844360 | AT1G52990.1 | 31.522 | 92 | 61 | 2 | 36 | 126 | 222 | 312 | 7.87e-12 | 61.2 |
| Msa0844360 | AT4G04950.1 | 29.787 | 94 | 66 | 0 | 32 | 125 | 11 | 104 | 2.59e-11 | 60.1 |
| Msa0844360 | AT4G32580.1 | 27.660 | 94 | 68 | 0 | 32 | 125 | 11 | 104 | 7.96e-11 | 56.6 |
| Msa0844360 | AT2G15570.1 | 25.843 | 89 | 65 | 1 | 32 | 119 | 74 | 162 | 8.91e-11 | 56.6 |
| Msa0844360 | AT2G15570.2 | 25.843 | 89 | 65 | 1 | 32 | 119 | 75 | 163 | 9.63e-11 | 56.6 |
Find 32 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGCTTGTTAGTTTCTT+TGG | 0.210380 | 5_4:+22773743 | None:intergenic |
| CCTTCCATTCCACTGCTAAA+TGG | 0.240816 | 5_4:-22773785 | Msa0844360:CDS |
| TAAGATGGTAATTGAATTTA+CGG | 0.284078 | 5_4:-22773628 | Msa0844360:intron |
| GATTGACGTGGATGAATTAA+TGG | 0.293121 | 5_4:-22773523 | Msa0844360:intron |
| GCAGCAAAGTCTTGAATGAT+TGG | 0.331944 | 5_4:+22773573 | None:intergenic |
| ATCATAAAGGAACATGAATA+AGG | 0.362840 | 5_4:-22772821 | Msa0844360:three_prime_UTR |
| AAAGTTGTTGACAAGGTTGT+AGG | 0.405303 | 5_4:-22772930 | Msa0844360:CDS |
| GACTGTGTTGAGCATCATAA+AGG | 0.416742 | 5_4:-22772834 | Msa0844360:three_prime_UTR |
| CAGCTTGTTAGTTTCTTTGG+AGG | 0.429788 | 5_4:+22773746 | None:intergenic |
| TTCTAATCTTGTTTGTATGA+TGG | 0.429929 | 5_4:+22773921 | None:intergenic |
| TTCATACCACATTTACATGT+TGG | 0.488317 | 5_4:-22772775 | Msa0844360:three_prime_UTR |
| TTCTTCATCAGTATGAATGT+TGG | 0.495900 | 5_4:+22772957 | None:intergenic |
| AAGTTGTTGACAAGGTTGTA+GGG | 0.506438 | 5_4:-22772929 | Msa0844360:CDS |
| TTCTTGTCTAAGTCCCCAAA+AGG | 0.530379 | 5_4:-22773886 | Msa0844360:five_prime_UTR |
| CCTTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_4:+22773781 | None:intergenic |
| CTCCAAAGAAACTAACAAGC+TGG | 0.546462 | 5_4:-22773745 | Msa0844360:intron |
| ACATGTAAATGTGGTATGAA+AGG | 0.548865 | 5_4:+22772778 | None:intergenic |
| GTGTGGACCTTGCAAATACA+TGG | 0.552168 | 5_4:-22773598 | Msa0844360:CDS |
| CCATTTAGCAGTGGAATGGA+AGG | 0.552428 | 5_4:+22773785 | None:intergenic |
| CCATTCCACTGCTAAATGGA+AGG | 0.553763 | 5_4:-22773781 | Msa0844360:CDS |
| ACATTCATACTGATGAAGAA+AGG | 0.574346 | 5_4:-22772954 | Msa0844360:CDS |
| GTCATACCAACATGTAAATG+TGG | 0.584830 | 5_4:+22772769 | None:intergenic |
| ATTGGATCCATGTATTTGCA+AGG | 0.586486 | 5_4:+22773591 | None:intergenic |
| GGGAGGCAATTTATCCAACA+TGG | 0.596510 | 5_4:-22773853 | Msa0844360:CDS |
| GAATTTACGGCTGCATGGTG+TGG | 0.600755 | 5_4:-22773615 | Msa0844360:CDS |
| GAAAGGAAAAGTTGTTGACA+AGG | 0.605147 | 5_4:-22772937 | Msa0844360:CDS |
| AATTTATCCAACATGGAGCA+TGG | 0.613422 | 5_4:-22773846 | Msa0844360:CDS |
| ATAAGCCTTCCATTTAGCAG+TGG | 0.613671 | 5_4:+22773776 | None:intergenic |
| TGTATGACCATGCTCCATGT+TGG | 0.627275 | 5_4:+22773839 | None:intergenic |
| AGTTGTTGACAAGGTTGTAG+GGG | 0.631631 | 5_4:-22772928 | Msa0844360:CDS |
| AGATTTCATCAAGATTGACG+TGG | 0.662014 | 5_4:-22773535 | Msa0844360:CDS |
| TAATTGAATTTACGGCTGCA+TGG | 0.665704 | 5_4:-22773620 | Msa0844360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTATATATCCTAATATA+AGG | - | chr5_4:22773110-22773129 | Msa0844360:intron | 15.0% |
| !! | TGTTATATATCCTAATATAA+GGG | - | chr5_4:22773111-22773130 | Msa0844360:intron | 15.0% |
| !! | ATCTTTATATAATGTATAGA+TGG | + | chr5_4:22773144-22773163 | None:intergenic | 15.0% |
| !!! | TATACTCAAATGATTATTTT+AGG | + | chr5_4:22773316-22773335 | None:intergenic | 15.0% |
| !!! | AAGATGAACTTTTTTTTTAA+AGG | - | chr5_4:22773455-22773474 | Msa0844360:intron | 15.0% |
| !!! | AGATGAACTTTTTTTTTAAA+GGG | - | chr5_4:22773456-22773475 | Msa0844360:intron | 15.0% |
| !!! | ATTATTTTTCAATTGTAAAC+AGG | - | chr5_4:22773557-22773576 | Msa0844360:CDS | 15.0% |
| !!! | TTATTTTTCAATTGTAAACA+GGG | - | chr5_4:22773558-22773577 | Msa0844360:CDS | 15.0% |
| !! | ATGTTATATATCCTAATATA+AGG | - | chr5_4:22773110-22773129 | Msa0844360:intron | 15.0% |
| !! | TGTTATATATCCTAATATAA+GGG | - | chr5_4:22773111-22773130 | Msa0844360:intron | 15.0% |
| !! | ATCTTTATATAATGTATAGA+TGG | + | chr5_4:22773144-22773163 | None:intergenic | 15.0% |
| !!! | TATACTCAAATGATTATTTT+AGG | + | chr5_4:22773316-22773335 | None:intergenic | 15.0% |
| !!! | AAGATGAACTTTTTTTTTAA+AGG | - | chr5_4:22773455-22773474 | Msa0844360:intron | 15.0% |
| !!! | AGATGAACTTTTTTTTTAAA+GGG | - | chr5_4:22773456-22773475 | Msa0844360:intron | 15.0% |
| !!! | ATTATTTTTCAATTGTAAAC+AGG | - | chr5_4:22773557-22773576 | Msa0844360:CDS | 15.0% |
| !!! | TTATTTTTCAATTGTAAACA+GGG | - | chr5_4:22773558-22773577 | Msa0844360:CDS | 15.0% |
| !!! | TTTTGTTTTTTTAACTCTCA+TGG | - | chr5_4:22772898-22772917 | Msa0844360:CDS | 20.0% |
| !!! | TTTGTTTTTTTAACTCTCAT+GGG | - | chr5_4:22772899-22772918 | Msa0844360:CDS | 20.0% |
| !! | TAAGATGGTAATTGAATTTA+CGG | - | chr5_4:22772941-22772960 | Msa0844360:CDS | 20.0% |
| !! | ATAATTAATGTATCAAACTC+CGG | - | chr5_4:22773333-22773352 | Msa0844360:intron | 20.0% |
| !!! | ATACTGTTAAGTTGAATTAA+GGG | + | chr5_4:22773368-22773387 | None:intergenic | 20.0% |
| !!! | AATACTGTTAAGTTGAATTA+AGG | + | chr5_4:22773369-22773388 | None:intergenic | 20.0% |
| !!! | GATGAACTTTTTTTTTAAAG+GGG | - | chr5_4:22773457-22773476 | Msa0844360:intron | 20.0% |
| !!! | TTTTGTTTTTTTAACTCTCA+TGG | - | chr5_4:22772898-22772917 | Msa0844360:CDS | 20.0% |
| !!! | TTTGTTTTTTTAACTCTCAT+GGG | - | chr5_4:22772899-22772918 | Msa0844360:CDS | 20.0% |
| !! | TAAGATGGTAATTGAATTTA+CGG | - | chr5_4:22772941-22772960 | Msa0844360:CDS | 20.0% |
| !! | ATAATTAATGTATCAAACTC+CGG | - | chr5_4:22773333-22773352 | Msa0844360:intron | 20.0% |
| !!! | ATACTGTTAAGTTGAATTAA+GGG | + | chr5_4:22773368-22773387 | None:intergenic | 20.0% |
| !!! | AATACTGTTAAGTTGAATTA+AGG | + | chr5_4:22773369-22773388 | None:intergenic | 20.0% |
| !!! | GATGAACTTTTTTTTTAAAG+GGG | - | chr5_4:22773457-22773476 | Msa0844360:intron | 20.0% |
| !! | TTCTAATCTTGTTTGTATGA+TGG | + | chr5_4:22772651-22772670 | None:intergenic | 25.0% |
| !!! | TGTATTTTTTTGGCTTAAGA+TGG | - | chr5_4:22772926-22772945 | Msa0844360:CDS | 25.0% |
| ! | TTACTTATAAGCTCTTACTT+TGG | - | chr5_4:22773234-22773253 | Msa0844360:intron | 25.0% |
| ! | ATCATAAAGGAACATGAATA+AGG | - | chr5_4:22773748-22773767 | Msa0844360:CDS | 25.0% |
| !! | TTCTAATCTTGTTTGTATGA+TGG | + | chr5_4:22772651-22772670 | None:intergenic | 25.0% |
| !!! | TGTATTTTTTTGGCTTAAGA+TGG | - | chr5_4:22772926-22772945 | Msa0844360:CDS | 25.0% |
| ! | TTACTTATAAGCTCTTACTT+TGG | - | chr5_4:22773234-22773253 | Msa0844360:intron | 25.0% |
| ! | ATCATAAAGGAACATGAATA+AGG | - | chr5_4:22773748-22773767 | Msa0844360:CDS | 25.0% |
| !!! | TCCCATCTTTTTTTCCTTTT+GGG | + | chr5_4:22772700-22772719 | None:intergenic | 30.0% |
| GAATTAAGGGATATAAAAGC+CGG | + | chr5_4:22773355-22773374 | None:intergenic | 30.0% | |
| GTTATGACTAGACACAAAAT+TGG | - | chr5_4:22773481-22773500 | Msa0844360:intron | 30.0% | |
| !! | ATTTGAAACGAGACTTTTTG+AGG | - | chr5_4:22773519-22773538 | Msa0844360:intron | 30.0% |
| TTCTTCATCAGTATGAATGT+TGG | + | chr5_4:22773615-22773634 | None:intergenic | 30.0% | |
| ACATTCATACTGATGAAGAA+AGG | - | chr5_4:22773615-22773634 | Msa0844360:CDS | 30.0% | |
| ACATGTAAATGTGGTATGAA+AGG | + | chr5_4:22773794-22773813 | None:intergenic | 30.0% | |
| TTCATACCACATTTACATGT+TGG | - | chr5_4:22773794-22773813 | Msa0844360:CDS | 30.0% | |
| TTTGCACGTCAAAAACAATT+TGG | + | chr5_4:22773848-22773867 | None:intergenic | 30.0% | |
| !!! | TCCCATCTTTTTTTCCTTTT+GGG | + | chr5_4:22772700-22772719 | None:intergenic | 30.0% |
| GAATTAAGGGATATAAAAGC+CGG | + | chr5_4:22773355-22773374 | None:intergenic | 30.0% | |
| GTTATGACTAGACACAAAAT+TGG | - | chr5_4:22773481-22773500 | Msa0844360:intron | 30.0% | |
| !! | ATTTGAAACGAGACTTTTTG+AGG | - | chr5_4:22773519-22773538 | Msa0844360:intron | 30.0% |
| TTCTTCATCAGTATGAATGT+TGG | + | chr5_4:22773615-22773634 | None:intergenic | 30.0% | |
| ACATTCATACTGATGAAGAA+AGG | - | chr5_4:22773615-22773634 | Msa0844360:CDS | 30.0% | |
| ACATGTAAATGTGGTATGAA+AGG | + | chr5_4:22773794-22773813 | None:intergenic | 30.0% | |
| TTCATACCACATTTACATGT+TGG | - | chr5_4:22773794-22773813 | Msa0844360:CDS | 30.0% | |
| TTTGCACGTCAAAAACAATT+TGG | + | chr5_4:22773848-22773867 | None:intergenic | 30.0% | |
| TCCCCAAAAGGAAAAAAAGA+TGG | - | chr5_4:22772695-22772714 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CCCATCTTTTTTTCCTTTTG+GGG | + | chr5_4:22772699-22772718 | None:intergenic | 35.0% |
| CCCCAAAAGGAAAAAAAGAT+GGG | - | chr5_4:22772696-22772715 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CTCCCATCTTTTTTTCCTTT+TGG | + | chr5_4:22772701-22772720 | None:intergenic | 35.0% |
| CAAAAGGAAAAAAAGATGGG+AGG | - | chr5_4:22772699-22772718 | Msa0844360:three_prime_UTR | 35.0% | |
| AATTTATCCAACATGGAGCA+TGG | - | chr5_4:22772723-22772742 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CATGGGATCGTGTATTTTTT+TGG | - | chr5_4:22772916-22772935 | Msa0844360:CDS | 35.0% |
| TAATTGAATTTACGGCTGCA+TGG | - | chr5_4:22772949-22772968 | Msa0844360:CDS | 35.0% | |
| ATTGGATCCATGTATTTGCA+AGG | + | chr5_4:22772981-22773000 | None:intergenic | 35.0% | |
| AGATTTCATCAAGATTGACG+TGG | - | chr5_4:22773034-22773053 | Msa0844360:intron | 35.0% | |
| GATTGACGTGGATGAATTAA+TGG | - | chr5_4:22773046-22773065 | Msa0844360:intron | 35.0% | |
| GAAAGGAAAAGTTGTTGACA+AGG | - | chr5_4:22773632-22773651 | Msa0844360:intron | 35.0% | |
| AAAGTTGTTGACAAGGTTGT+AGG | - | chr5_4:22773639-22773658 | Msa0844360:intron | 35.0% | |
| AAGTTGTTGACAAGGTTGTA+GGG | - | chr5_4:22773640-22773659 | Msa0844360:intron | 35.0% | |
| GTCATACCAACATGTAAATG+TGG | + | chr5_4:22773803-22773822 | None:intergenic | 35.0% | |
| TCCCCAAAAGGAAAAAAAGA+TGG | - | chr5_4:22772695-22772714 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CCCATCTTTTTTTCCTTTTG+GGG | + | chr5_4:22772699-22772718 | None:intergenic | 35.0% |
| CCCCAAAAGGAAAAAAAGAT+GGG | - | chr5_4:22772696-22772715 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CTCCCATCTTTTTTTCCTTT+TGG | + | chr5_4:22772701-22772720 | None:intergenic | 35.0% |
| CAAAAGGAAAAAAAGATGGG+AGG | - | chr5_4:22772699-22772718 | Msa0844360:three_prime_UTR | 35.0% | |
| AATTTATCCAACATGGAGCA+TGG | - | chr5_4:22772723-22772742 | Msa0844360:three_prime_UTR | 35.0% | |
| !!! | CATGGGATCGTGTATTTTTT+TGG | - | chr5_4:22772916-22772935 | Msa0844360:CDS | 35.0% |
| TAATTGAATTTACGGCTGCA+TGG | - | chr5_4:22772949-22772968 | Msa0844360:CDS | 35.0% | |
| ATTGGATCCATGTATTTGCA+AGG | + | chr5_4:22772981-22773000 | None:intergenic | 35.0% | |
| AGATTTCATCAAGATTGACG+TGG | - | chr5_4:22773034-22773053 | Msa0844360:intron | 35.0% | |
| GATTGACGTGGATGAATTAA+TGG | - | chr5_4:22773046-22773065 | Msa0844360:intron | 35.0% | |
| GAAAGGAAAAGTTGTTGACA+AGG | - | chr5_4:22773632-22773651 | Msa0844360:intron | 35.0% | |
| AAAGTTGTTGACAAGGTTGT+AGG | - | chr5_4:22773639-22773658 | Msa0844360:intron | 35.0% | |
| AAGTTGTTGACAAGGTTGTA+GGG | - | chr5_4:22773640-22773659 | Msa0844360:intron | 35.0% | |
| GTCATACCAACATGTAAATG+TGG | + | chr5_4:22773803-22773822 | None:intergenic | 35.0% | |
| TTCTTGTCTAAGTCCCCAAA+AGG | - | chr5_4:22772683-22772702 | Msa0844360:three_prime_UTR | 40.0% | |
| ATAAGCCTTCCATTTAGCAG+TGG | + | chr5_4:22772796-22772815 | None:intergenic | 40.0% | |
| !! | CAGCTTGTTAGTTTCTTTGG+AGG | + | chr5_4:22772826-22772845 | None:intergenic | 40.0% |
| CTCCAAAGAAACTAACAAGC+TGG | - | chr5_4:22772824-22772843 | Msa0844360:three_prime_UTR | 40.0% | |
| !! | CACCAGCTTGTTAGTTTCTT+TGG | + | chr5_4:22772829-22772848 | None:intergenic | 40.0% |
| GCAGCAAAGTCTTGAATGAT+TGG | + | chr5_4:22772999-22773018 | None:intergenic | 40.0% | |
| ! | TGGTCTTTTTCCATACGAAC+AGG | - | chr5_4:22773254-22773273 | Msa0844360:intron | 40.0% |
| AGTTGTTGACAAGGTTGTAG+GGG | - | chr5_4:22773641-22773660 | Msa0844360:intron | 40.0% | |
| GACTGTGTTGAGCATCATAA+AGG | - | chr5_4:22773735-22773754 | Msa0844360:intron | 40.0% | |
| TTCTTGTCTAAGTCCCCAAA+AGG | - | chr5_4:22772683-22772702 | Msa0844360:three_prime_UTR | 40.0% | |
| ATAAGCCTTCCATTTAGCAG+TGG | + | chr5_4:22772796-22772815 | None:intergenic | 40.0% | |
| !! | CAGCTTGTTAGTTTCTTTGG+AGG | + | chr5_4:22772826-22772845 | None:intergenic | 40.0% |
| CTCCAAAGAAACTAACAAGC+TGG | - | chr5_4:22772824-22772843 | Msa0844360:three_prime_UTR | 40.0% | |
| !! | CACCAGCTTGTTAGTTTCTT+TGG | + | chr5_4:22772829-22772848 | None:intergenic | 40.0% |
| GCAGCAAAGTCTTGAATGAT+TGG | + | chr5_4:22772999-22773018 | None:intergenic | 40.0% | |
| ! | TGGTCTTTTTCCATACGAAC+AGG | - | chr5_4:22773254-22773273 | Msa0844360:intron | 40.0% |
| AGTTGTTGACAAGGTTGTAG+GGG | - | chr5_4:22773641-22773660 | Msa0844360:intron | 40.0% | |
| GACTGTGTTGAGCATCATAA+AGG | - | chr5_4:22773735-22773754 | Msa0844360:intron | 40.0% | |
| GGGAGGCAATTTATCCAACA+TGG | - | chr5_4:22772716-22772735 | Msa0844360:three_prime_UTR | 45.0% | |
| TGTATGACCATGCTCCATGT+TGG | + | chr5_4:22772733-22772752 | None:intergenic | 45.0% | |
| CCATTTAGCAGTGGAATGGA+AGG | + | chr5_4:22772787-22772806 | None:intergenic | 45.0% | |
| CCTTCCATTCCACTGCTAAA+TGG | - | chr5_4:22772784-22772803 | Msa0844360:three_prime_UTR | 45.0% | |
| CCTTCCATTTAGCAGTGGAA+TGG | + | chr5_4:22772791-22772810 | None:intergenic | 45.0% | |
| CCATTCCACTGCTAAATGGA+AGG | - | chr5_4:22772788-22772807 | Msa0844360:three_prime_UTR | 45.0% | |
| GTGTGGACCTTGCAAATACA+TGG | - | chr5_4:22772971-22772990 | Msa0844360:CDS | 45.0% | |
| TGGTGTGCTGCCCTTATATT+AGG | + | chr5_4:22773124-22773143 | None:intergenic | 45.0% | |
| CCTTAGTCATCCTGTTCGTA+TGG | + | chr5_4:22773267-22773286 | None:intergenic | 45.0% | |
| CCATACGAACAGGATGACTA+AGG | - | chr5_4:22773264-22773283 | Msa0844360:intron | 45.0% | |
| CAAGGTTGTAGGGGCAAAAA+AGG | - | chr5_4:22773650-22773669 | Msa0844360:intron | 45.0% | |
| GGGAGGCAATTTATCCAACA+TGG | - | chr5_4:22772716-22772735 | Msa0844360:three_prime_UTR | 45.0% | |
| TGTATGACCATGCTCCATGT+TGG | + | chr5_4:22772733-22772752 | None:intergenic | 45.0% | |
| CCATTTAGCAGTGGAATGGA+AGG | + | chr5_4:22772787-22772806 | None:intergenic | 45.0% | |
| CCTTCCATTCCACTGCTAAA+TGG | - | chr5_4:22772784-22772803 | Msa0844360:three_prime_UTR | 45.0% | |
| CCTTCCATTTAGCAGTGGAA+TGG | + | chr5_4:22772791-22772810 | None:intergenic | 45.0% | |
| CCATTCCACTGCTAAATGGA+AGG | - | chr5_4:22772788-22772807 | Msa0844360:three_prime_UTR | 45.0% | |
| GTGTGGACCTTGCAAATACA+TGG | - | chr5_4:22772971-22772990 | Msa0844360:CDS | 45.0% | |
| TGGTGTGCTGCCCTTATATT+AGG | + | chr5_4:22773124-22773143 | None:intergenic | 45.0% | |
| CCTTAGTCATCCTGTTCGTA+TGG | + | chr5_4:22773267-22773286 | None:intergenic | 45.0% | |
| CCATACGAACAGGATGACTA+AGG | - | chr5_4:22773264-22773283 | Msa0844360:intron | 45.0% | |
| CAAGGTTGTAGGGGCAAAAA+AGG | - | chr5_4:22773650-22773669 | Msa0844360:intron | 45.0% | |
| GAATTTACGGCTGCATGGTG+TGG | - | chr5_4:22772954-22772973 | Msa0844360:CDS | 50.0% | |
| GAATTTACGGCTGCATGGTG+TGG | - | chr5_4:22772954-22772973 | Msa0844360:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22772646 | 22773945 | 22772646 | ID=Msa0844360;Name=Msa0844360 |
| chr5_4 | mRNA | 22772646 | 22773945 | 22772646 | ID=Msa0844360-mRNA-1;Parent=Msa0844360;Name=Msa0844360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|1|1|3|235|128 |
| chr5_4 | exon | 22772646 | 22773012 | 22772646 | ID=Msa0844360-mRNA-1:exon:9280;Parent=Msa0844360-mRNA-1 |
| chr5_4 | exon | 22773524 | 22773646 | 22773524 | ID=Msa0844360-mRNA-1:exon:9279;Parent=Msa0844360-mRNA-1 |
| chr5_4 | exon | 22773746 | 22773945 | 22773746 | ID=Msa0844360-mRNA-1:exon:9278;Parent=Msa0844360-mRNA-1 |
| chr5_4 | five_prime_UTR | 22773878 | 22773945 | 22773878 | ID=Msa0844360-mRNA-1:five_prime_utr;Parent=Msa0844360-mRNA-1 |
| chr5_4 | CDS | 22773746 | 22773877 | 22773746 | ID=Msa0844360-mRNA-1:cds;Parent=Msa0844360-mRNA-1 |
| chr5_4 | CDS | 22773524 | 22773646 | 22773524 | ID=Msa0844360-mRNA-1:cds;Parent=Msa0844360-mRNA-1 |
| chr5_4 | CDS | 22772881 | 22773012 | 22772881 | ID=Msa0844360-mRNA-1:cds;Parent=Msa0844360-mRNA-1 |
| chr5_4 | three_prime_UTR | 22772646 | 22772880 | 22772646 | ID=Msa0844360-mRNA-1:three_prime_utr;Parent=Msa0844360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
