Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724700 | AES96536.1 | 90.090 | 333 | 7 | 3 | 1 | 316 | 1 | 324 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724700 | sp|Q6YWR4|HOX16_ORYSJ | 41.818 | 165 | 69 | 4 | 40 | 188 | 38 | 191 | 1.28e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724700 | G7K9R5 | 90.090 | 333 | 7 | 3 | 1 | 316 | 1 | 324 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0724700 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0724700 | Msa0844710 | 0.901877 | 1.717125e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724700 | MtrunA17_Chr5g0415941 | 90.090 | 333 | 7 | 3 | 1 | 316 | 1 | 324 | 0.0 | 591 |
| Msa0724700 | MtrunA17_Chr8g0362751 | 47.879 | 330 | 94 | 9 | 10 | 316 | 12 | 286 | 1.86e-79 | 243 |
| Msa0724700 | MtrunA17_Chr4g0060031 | 43.143 | 350 | 150 | 10 | 1 | 316 | 1 | 335 | 5.21e-63 | 202 |
| Msa0724700 | MtrunA17_Chr6g0450991 | 40.102 | 197 | 88 | 4 | 86 | 263 | 67 | 252 | 2.80e-26 | 105 |
| Msa0724700 | MtrunA17_Chr8g0381741 | 48.062 | 129 | 45 | 3 | 55 | 166 | 27 | 150 | 8.24e-24 | 99.0 |
| Msa0724700 | MtrunA17_Chr6g0453021 | 40.000 | 190 | 74 | 7 | 78 | 244 | 87 | 259 | 1.88e-22 | 94.7 |
| Msa0724700 | MtrunA17_Chr3g0123691 | 48.673 | 113 | 39 | 2 | 70 | 166 | 47 | 156 | 2.94e-22 | 94.7 |
| Msa0724700 | MtrunA17_Chr3g0119291 | 52.041 | 98 | 31 | 1 | 86 | 167 | 59 | 156 | 5.46e-22 | 92.8 |
| Msa0724700 | MtrunA17_Chr8g0362151 | 44.444 | 135 | 56 | 3 | 50 | 165 | 38 | 172 | 3.20e-21 | 91.3 |
| Msa0724700 | MtrunA17_Chr5g0416391 | 51.042 | 96 | 31 | 1 | 86 | 165 | 77 | 172 | 1.26e-19 | 87.0 |
| Msa0724700 | MtrunA17_Chr7g0217111 | 50.000 | 96 | 32 | 1 | 86 | 165 | 80 | 175 | 3.71e-17 | 80.1 |
| Msa0724700 | MtrunA17_Chr7g0265521 | 45.556 | 90 | 40 | 1 | 86 | 166 | 63 | 152 | 7.51e-15 | 72.8 |
| Msa0724700 | MtrunA17_Chr3g0127511 | 45.455 | 88 | 39 | 1 | 88 | 166 | 40 | 127 | 5.05e-13 | 67.8 |
| Msa0724700 | MtrunA17_Chr1g0179581 | 41.573 | 89 | 43 | 1 | 81 | 160 | 23 | 111 | 8.03e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724700 | AT3G01470.1 | 37.674 | 215 | 84 | 9 | 51 | 240 | 30 | 219 | 2.64e-26 | 105 |
| Msa0724700 | AT4G40060.1 | 43.846 | 130 | 51 | 3 | 75 | 185 | 45 | 171 | 7.68e-25 | 102 |
| Msa0724700 | AT2G22430.1 | 53.608 | 97 | 29 | 1 | 86 | 166 | 62 | 158 | 4.13e-23 | 97.4 |
| Msa0724700 | AT5G65310.2 | 52.577 | 97 | 30 | 1 | 86 | 166 | 54 | 150 | 2.44e-22 | 95.1 |
| Msa0724700 | AT5G65310.1 | 52.577 | 97 | 30 | 1 | 86 | 166 | 72 | 168 | 3.10e-22 | 95.1 |
| Msa0724700 | AT1G69780.1 | 51.351 | 111 | 37 | 2 | 72 | 165 | 70 | 180 | 2.06e-21 | 92.4 |
| Msa0724700 | AT3G01220.1 | 38.122 | 181 | 85 | 5 | 86 | 244 | 87 | 262 | 3.74e-21 | 91.7 |
| Msa0724700 | AT5G15150.1 | 54.255 | 94 | 27 | 1 | 86 | 163 | 115 | 208 | 2.66e-20 | 89.7 |
| Msa0724700 | AT1G27045.1 | 37.671 | 146 | 58 | 3 | 37 | 166 | 36 | 164 | 1.92e-17 | 80.1 |
| Msa0724700 | AT1G26960.1 | 47.917 | 96 | 34 | 1 | 86 | 165 | 71 | 166 | 2.80e-17 | 80.5 |
| Msa0724700 | AT1G27045.5 | 43.363 | 113 | 46 | 2 | 70 | 166 | 11 | 121 | 2.26e-16 | 76.3 |
| Msa0724700 | AT1G27045.3 | 43.363 | 113 | 46 | 2 | 70 | 166 | 11 | 121 | 2.26e-16 | 76.3 |
| Msa0724700 | AT1G27045.2 | 43.363 | 113 | 46 | 2 | 70 | 166 | 3 | 113 | 3.13e-16 | 75.9 |
| Msa0724700 | AT1G27045.4 | 36.986 | 146 | 58 | 4 | 37 | 166 | 36 | 163 | 2.36e-15 | 74.7 |
| Msa0724700 | AT2G46680.1 | 37.615 | 109 | 52 | 1 | 82 | 174 | 28 | 136 | 6.41e-14 | 70.9 |
| Msa0724700 | AT2G46680.2 | 37.736 | 106 | 57 | 1 | 82 | 178 | 28 | 133 | 1.33e-13 | 70.1 |
| Msa0724700 | AT2G36610.1 | 36.842 | 114 | 55 | 2 | 70 | 166 | 55 | 168 | 2.30e-13 | 67.8 |
| Msa0724700 | AT5G03790.1 | 42.222 | 90 | 43 | 1 | 86 | 166 | 77 | 166 | 4.07e-13 | 68.2 |
| Msa0724700 | AT3G61890.1 | 38.095 | 105 | 48 | 2 | 89 | 177 | 33 | 136 | 2.08e-12 | 66.2 |
| Msa0724700 | AT5G03790.2 | 43.023 | 86 | 40 | 1 | 86 | 162 | 77 | 162 | 3.81e-12 | 64.7 |
| Msa0724700 | AT2G18550.1 | 36.607 | 112 | 62 | 1 | 86 | 188 | 61 | 172 | 8.46e-11 | 61.2 |
Find 45 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAAATTCTTGTAATTT+TGG | 0.015177 | 5_1:-23683402 | Msa0724700:CDS |
| TCAATTACAAATTCAGAAAA+TGG | 0.161025 | 5_1:-23683693 | Msa0724700:CDS |
| CTGAAGCCCTTGAATCTCTT+TGG | 0.177337 | 5_1:-23685271 | Msa0724700:CDS |
| TTCTCTTTCTCTTTATCTCT+TGG | 0.249115 | 5_1:+23683786 | None:intergenic |
| GCAAGTTGAACTTTCCTATC+AGG | 0.270065 | 5_1:+23684618 | None:intergenic |
| TAGCAAACATCTTCAACTTT+TGG | 0.273698 | 5_1:+23683435 | None:intergenic |
| TGAAGCCCTTGAATCTCTTT+GGG | 0.300479 | 5_1:-23685270 | Msa0724700:CDS |
| TGAGGTGAATTGATTGCTTC+TGG | 0.314138 | 5_1:+23683744 | None:intergenic |
| CAAAGTGTCACTCCCTAATA+TGG | 0.317058 | 5_1:-23683667 | Msa0724700:CDS |
| GTGGAAATTTAAATTCAATA+AGG | 0.341810 | 5_1:+23683345 | None:intergenic |
| TCTCTTTCTCTTTATCTCTT+GGG | 0.342274 | 5_1:+23683787 | None:intergenic |
| CAAAAGGTTTGATCTTCAAC+AGG | 0.362492 | 5_1:+23683375 | None:intergenic |
| TTTCTCAAGTTGTTGAAAGA+AGG | 0.381022 | 5_1:+23684761 | None:intergenic |
| GATAGCCCACATTGCAATGA+TGG | 0.423802 | 5_1:-23683588 | Msa0724700:CDS |
| ATTGGATCTTTGTTGTTATG+AGG | 0.430991 | 5_1:+23683726 | None:intergenic |
| TTCTCAAGTTGTTGAAAGAA+GGG | 0.453337 | 5_1:+23684762 | None:intergenic |
| GTAATTGAGATTATATCCAT+TGG | 0.466626 | 5_1:+23683708 | None:intergenic |
| CATATTAGGGAGTGACACTT+TGG | 0.480614 | 5_1:+23683668 | None:intergenic |
| GTTCAACTTGCAAAAGAGCT+TGG | 0.481261 | 5_1:-23684606 | Msa0724700:CDS |
| TGTGAGAAATCTGAATGATC+AGG | 0.485138 | 5_1:+23683513 | None:intergenic |
| CAATTACAAATTCAGAAAAT+GGG | 0.485544 | 5_1:-23683692 | Msa0724700:CDS |
| GAATGACAAGTTAAAAGAAG+AGG | 0.495747 | 5_1:-23684345 | Msa0724700:intron |
| TATAAGGCTGTTCTTATGGC+AGG | 0.496797 | 5_1:-23685359 | None:intergenic |
| TCAATAAGGCCAGAAACAAA+AGG | 0.504416 | 5_1:+23683359 | None:intergenic |
| AAAACAAGCTTGAACCTGAT+AGG | 0.509669 | 5_1:-23684632 | Msa0724700:CDS |
| AAGAGCTTGGTTTGCAACCA+AGG | 0.513381 | 5_1:-23684593 | Msa0724700:CDS |
| TGTGAACCCAAAGAGATTCA+AGG | 0.525903 | 5_1:+23685264 | None:intergenic |
| ACCATCAACAAGGAAAGAAA+AGG | 0.538035 | 5_1:-23684704 | Msa0724700:CDS |
| AGATTTCTCACAAGATGAAG+AGG | 0.546898 | 5_1:-23683502 | Msa0724700:CDS |
| TGTTCCCATCATTGCAATGT+GGG | 0.548653 | 5_1:+23683583 | None:intergenic |
| TCATAACAACAAAGATCCAA+TGG | 0.563990 | 5_1:-23683724 | Msa0724700:CDS |
| GGATTCAGGTTCAAATTCAG+TGG | 0.566281 | 5_1:-23684832 | Msa0724700:intron |
| TCAAGGGCTTCAGAAGTACA+AGG | 0.569376 | 5_1:+23685281 | None:intergenic |
| GTGAACCCAAAGAGATTCAA+GGG | 0.581702 | 5_1:+23685265 | None:intergenic |
| ATAGCCCACATTGCAATGAT+GGG | 0.583931 | 5_1:-23683587 | Msa0724700:CDS |
| CTTGAGAAAGAAGAGAATTG+TGG | 0.599550 | 5_1:-23684747 | Msa0724700:CDS |
| AAAGCATGTGAAGAATCTGT+AGG | 0.619583 | 5_1:+23683540 | None:intergenic |
| ATCAACAAGGAAAGAAAAGG+AGG | 0.621166 | 5_1:-23684701 | Msa0724700:CDS |
| ATCACCTTGAAAAGAAGCAG+AGG | 0.635119 | 5_1:+23685241 | None:intergenic |
| TTGTTCCCATCATTGCAATG+TGG | 0.645404 | 5_1:+23683582 | None:intergenic |
| AAGGCTGTTCTTATGGCAGG+TGG | 0.647915 | 5_1:-23685356 | None:intergenic |
| AAAAGGTTTGATCTTCAACA+GGG | 0.685076 | 5_1:+23683376 | None:intergenic |
| GAAGCATGCTACCATCAACA+AGG | 0.695864 | 5_1:-23684714 | Msa0724700:CDS |
| CAAGGGCTTCAGAAGTACAA+GGG | 0.720149 | 5_1:+23685282 | None:intergenic |
| TGGTGGTGGAAGCAACAGAG+TGG | 0.722441 | 5_1:-23684796 | Msa0724700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAGACTATTTTTTTA+TGG | + | chr5_1:23683765-23683784 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTTTGTTACAAT+AGG | - | chr5_1:23684868-23684887 | Msa0724700:intron | 10.0% |
| !!! | AATAAAAGACTATTTTTTTA+TGG | + | chr5_1:23683765-23683784 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTTTGTTACAAT+AGG | - | chr5_1:23684868-23684887 | Msa0724700:intron | 10.0% |
| !!! | TGAAAAAGACTATTTTTATA+TGG | + | chr5_1:23683798-23683817 | None:intergenic | 15.0% |
| !! | NNNNNNNNNNCAAAACAGAA+GGG | - | chr5_1:23684241-23684260 | Msa0724700:intron | 15.0% |
| !! | TGAAAATTTACATTAGAATT+TGG | + | chr5_1:23684498-23684517 | None:intergenic | 15.0% |
| !!! | ATGAAAATTCTTGTAATTTT+GGG | - | chr5_1:23685302-23685321 | Msa0724700:CDS | 15.0% |
| !!! | TGAAAAAGACTATTTTTATA+TGG | + | chr5_1:23683798-23683817 | None:intergenic | 15.0% |
| !! | NNNNNNNNNNCAAAACAGAA+GGG | - | chr5_1:23684241-23684260 | Msa0724700:intron | 15.0% |
| !! | TGAAAATTTACATTAGAATT+TGG | + | chr5_1:23684498-23684517 | None:intergenic | 15.0% |
| !!! | ATGAAAATTCTTGTAATTTT+GGG | - | chr5_1:23685302-23685321 | Msa0724700:CDS | 15.0% |
| !! | CATATAGTTGAATTATAACA+TGG | - | chr5_1:23683831-23683850 | Msa0724700:intron | 20.0% |
| !! | CAAACTTTATTAAAGTAAAG+AGG | + | chr5_1:23684690-23684709 | None:intergenic | 20.0% |
| !! | CTTTACTTTAATAAAGTTTG+AGG | - | chr5_1:23684690-23684709 | Msa0724700:CDS | 20.0% |
| !! | AATGAGTTAATGATTGAATA+TGG | - | chr5_1:23684828-23684847 | Msa0724700:intron | 20.0% |
| !! | ATGAGTTAATGATTGAATAT+GGG | - | chr5_1:23684829-23684848 | Msa0724700:intron | 20.0% |
| !! | TCAATTACAAATTCAGAAAA+TGG | - | chr5_1:23685010-23685029 | Msa0724700:intron | 20.0% |
| !! | CAATTACAAATTCAGAAAAT+GGG | - | chr5_1:23685011-23685030 | Msa0724700:intron | 20.0% |
| !!! | TACATTTTAGTACCATATTA+GGG | + | chr5_1:23685051-23685070 | None:intergenic | 20.0% |
| !!! | TTACATTTTAGTACCATATT+AGG | + | chr5_1:23685052-23685071 | None:intergenic | 20.0% |
| !!! | AATTACAAGAATTTTCATGT+GGG | + | chr5_1:23685300-23685319 | None:intergenic | 20.0% |
| !!! | AAATTACAAGAATTTTCATG+TGG | + | chr5_1:23685301-23685320 | None:intergenic | 20.0% |
| !!! | CATGAAAATTCTTGTAATTT+TGG | - | chr5_1:23685301-23685320 | Msa0724700:CDS | 20.0% |
| !! | CATATAGTTGAATTATAACA+TGG | - | chr5_1:23683831-23683850 | Msa0724700:intron | 20.0% |
| !! | CAAACTTTATTAAAGTAAAG+AGG | + | chr5_1:23684690-23684709 | None:intergenic | 20.0% |
| !! | CTTTACTTTAATAAAGTTTG+AGG | - | chr5_1:23684690-23684709 | Msa0724700:CDS | 20.0% |
| !! | AATGAGTTAATGATTGAATA+TGG | - | chr5_1:23684828-23684847 | Msa0724700:intron | 20.0% |
| !! | ATGAGTTAATGATTGAATAT+GGG | - | chr5_1:23684829-23684848 | Msa0724700:intron | 20.0% |
| !! | TCAATTACAAATTCAGAAAA+TGG | - | chr5_1:23685010-23685029 | Msa0724700:intron | 20.0% |
| !! | CAATTACAAATTCAGAAAAT+GGG | - | chr5_1:23685011-23685030 | Msa0724700:intron | 20.0% |
| !!! | TACATTTTAGTACCATATTA+GGG | + | chr5_1:23685051-23685070 | None:intergenic | 20.0% |
| !!! | TTACATTTTAGTACCATATT+AGG | + | chr5_1:23685052-23685071 | None:intergenic | 20.0% |
| !!! | AATTACAAGAATTTTCATGT+GGG | + | chr5_1:23685300-23685319 | None:intergenic | 20.0% |
| !!! | AAATTACAAGAATTTTCATG+TGG | + | chr5_1:23685301-23685320 | None:intergenic | 20.0% |
| !!! | CATGAAAATTCTTGTAATTT+TGG | - | chr5_1:23685301-23685320 | Msa0724700:CDS | 20.0% |
| ! | CAATTCAAATATACACATGA+TGG | + | chr5_1:23683558-23683577 | None:intergenic | 25.0% |
| ! | CATGTGTATATTTGAATTGA+CGG | - | chr5_1:23683559-23683578 | Msa0724700:CDS | 25.0% |
| ! | CAATAGAAAGTTTGTATTGA+CGG | + | chr5_1:23683636-23683655 | None:intergenic | 25.0% |
| ! | TTTCTTAAGATCATGAAAGT+GGG | - | chr5_1:23683716-23683735 | Msa0724700:CDS | 25.0% |
| !! | ATTTCTTGAAAAGAGTTTTG+AGG | - | chr5_1:23684045-23684064 | Msa0724700:intron | 25.0% |
| ! | AAACAGCTTGAAAAAGATTA+TGG | - | chr5_1:23684278-23684297 | Msa0724700:intron | 25.0% |
| ! | TCAATCATTAACTCATTAGT+GGG | + | chr5_1:23684825-23684844 | None:intergenic | 25.0% |
| ! | TTCAATCATTAACTCATTAG+TGG | + | chr5_1:23684826-23684845 | None:intergenic | 25.0% |
| ! | TGAGTTAATGATTGAATATG+GGG | - | chr5_1:23684830-23684849 | Msa0724700:intron | 25.0% |
| ! | GTAATTGAGATTATATCCAT+TGG | + | chr5_1:23684998-23685017 | None:intergenic | 25.0% |
| ! | CAATTCAAATATACACATGA+TGG | + | chr5_1:23683558-23683577 | None:intergenic | 25.0% |
| ! | CATGTGTATATTTGAATTGA+CGG | - | chr5_1:23683559-23683578 | Msa0724700:CDS | 25.0% |
| ! | CAATAGAAAGTTTGTATTGA+CGG | + | chr5_1:23683636-23683655 | None:intergenic | 25.0% |
| ! | TTTCTTAAGATCATGAAAGT+GGG | - | chr5_1:23683716-23683735 | Msa0724700:CDS | 25.0% |
| !! | ATTTCTTGAAAAGAGTTTTG+AGG | - | chr5_1:23684045-23684064 | Msa0724700:intron | 25.0% |
| ! | AAACAGCTTGAAAAAGATTA+TGG | - | chr5_1:23684278-23684297 | Msa0724700:intron | 25.0% |
| ! | TCAATCATTAACTCATTAGT+GGG | + | chr5_1:23684825-23684844 | None:intergenic | 25.0% |
| ! | TTCAATCATTAACTCATTAG+TGG | + | chr5_1:23684826-23684845 | None:intergenic | 25.0% |
| ! | TGAGTTAATGATTGAATATG+GGG | - | chr5_1:23684830-23684849 | Msa0724700:intron | 25.0% |
| ! | GTAATTGAGATTATATCCAT+TGG | + | chr5_1:23684998-23685017 | None:intergenic | 25.0% |
| AAAAGAAGTGAGAAGAATTG+AGG | + | chr5_1:23683496-23683515 | None:intergenic | 30.0% | |
| CGTCAATACAAACTTTCTAT+TGG | - | chr5_1:23683634-23683653 | Msa0724700:CDS | 30.0% | |
| GTTTCTTAAGATCATGAAAG+TGG | - | chr5_1:23683715-23683734 | Msa0724700:CDS | 30.0% | |
| !! | TCAGTGGTTAATTTTGAGAA+TGG | - | chr5_1:23683887-23683906 | Msa0724700:intron | 30.0% |
| ! | TTCTCAAGTTGTTGAAAGAA+GGG | + | chr5_1:23683944-23683963 | None:intergenic | 30.0% |
| ! | TTTCTCAAGTTGTTGAAAGA+AGG | + | chr5_1:23683945-23683964 | None:intergenic | 30.0% |
| GAATGACAAGTTAAAAGAAG+AGG | - | chr5_1:23684358-23684377 | Msa0724700:CDS | 30.0% | |
| GTCAACACATCAATAAATGT+TGG | - | chr5_1:23684456-23684475 | Msa0724700:intron | 30.0% | |
| !!! | ATGTGTATGTGTGTTTTGAT+AGG | + | chr5_1:23684625-23684644 | None:intergenic | 30.0% |
| TCTCTTTCTCTTTATCTCTT+GGG | + | chr5_1:23684919-23684938 | None:intergenic | 30.0% | |
| TTCTCTTTCTCTTTATCTCT+TGG | + | chr5_1:23684920-23684939 | None:intergenic | 30.0% | |
| !! | ATTGGATCTTTGTTGTTATG+AGG | + | chr5_1:23684980-23684999 | None:intergenic | 30.0% |
| TCATAACAACAAAGATCCAA+TGG | - | chr5_1:23684979-23684998 | Msa0724700:intron | 30.0% | |
| ! | TAGCAAACATCTTCAACTTT+TGG | + | chr5_1:23685271-23685290 | None:intergenic | 30.0% |
| AAAAGGTTTGATCTTCAACA+GGG | + | chr5_1:23685330-23685349 | None:intergenic | 30.0% | |
| !! | AAGATCAAACCTTTTGTTTC+TGG | - | chr5_1:23685335-23685354 | Msa0724700:CDS | 30.0% |
| AAAAGAAGTGAGAAGAATTG+AGG | + | chr5_1:23683496-23683515 | None:intergenic | 30.0% | |
| CGTCAATACAAACTTTCTAT+TGG | - | chr5_1:23683634-23683653 | Msa0724700:CDS | 30.0% | |
| GTTTCTTAAGATCATGAAAG+TGG | - | chr5_1:23683715-23683734 | Msa0724700:CDS | 30.0% | |
| !! | TCAGTGGTTAATTTTGAGAA+TGG | - | chr5_1:23683887-23683906 | Msa0724700:intron | 30.0% |
| ! | TTCTCAAGTTGTTGAAAGAA+GGG | + | chr5_1:23683944-23683963 | None:intergenic | 30.0% |
| ! | TTTCTCAAGTTGTTGAAAGA+AGG | + | chr5_1:23683945-23683964 | None:intergenic | 30.0% |
| GAATGACAAGTTAAAAGAAG+AGG | - | chr5_1:23684358-23684377 | Msa0724700:CDS | 30.0% | |
| GTCAACACATCAATAAATGT+TGG | - | chr5_1:23684456-23684475 | Msa0724700:intron | 30.0% | |
| !!! | ATGTGTATGTGTGTTTTGAT+AGG | + | chr5_1:23684625-23684644 | None:intergenic | 30.0% |
| TCTCTTTCTCTTTATCTCTT+GGG | + | chr5_1:23684919-23684938 | None:intergenic | 30.0% | |
| TTCTCTTTCTCTTTATCTCT+TGG | + | chr5_1:23684920-23684939 | None:intergenic | 30.0% | |
| !! | ATTGGATCTTTGTTGTTATG+AGG | + | chr5_1:23684980-23684999 | None:intergenic | 30.0% |
| TCATAACAACAAAGATCCAA+TGG | - | chr5_1:23684979-23684998 | Msa0724700:intron | 30.0% | |
| ! | TAGCAAACATCTTCAACTTT+TGG | + | chr5_1:23685271-23685290 | None:intergenic | 30.0% |
| AAAAGGTTTGATCTTCAACA+GGG | + | chr5_1:23685330-23685349 | None:intergenic | 30.0% | |
| !! | AAGATCAAACCTTTTGTTTC+TGG | - | chr5_1:23685335-23685354 | Msa0724700:CDS | 30.0% |
| ! | ATGGTTTGTGTTTGATGACA+TGG | - | chr5_1:23683850-23683869 | Msa0724700:intron | 35.0% |
| !! | GTGGTTAATTTTGAGAATGG+TGG | - | chr5_1:23683890-23683909 | Msa0724700:intron | 35.0% |
| !! | GTTAATTTTGAGAATGGTGG+TGG | - | chr5_1:23683893-23683912 | Msa0724700:intron | 35.0% |
| CTTGAGAAAGAAGAGAATTG+TGG | - | chr5_1:23683956-23683975 | Msa0724700:intron | 35.0% | |
| ACCATCAACAAGGAAAGAAA+AGG | - | chr5_1:23683999-23684018 | Msa0724700:intron | 35.0% | |
| ! | TCCTTTTCTTTCCTTGTTGA+TGG | + | chr5_1:23684003-23684022 | None:intergenic | 35.0% |
| ATCAACAAGGAAAGAAAAGG+AGG | - | chr5_1:23684002-23684021 | Msa0724700:intron | 35.0% | |
| AAAACAAGCTTGAACCTGAT+AGG | - | chr5_1:23684071-23684090 | Msa0724700:intron | 35.0% | |
| TTGACACACACAAACGAAAT+TGG | - | chr5_1:23684397-23684416 | Msa0724700:CDS | 35.0% | |
| AATTGTCTGATCTCAATCCA+GGG | - | chr5_1:23684550-23684569 | Msa0724700:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr5_1:23684713-23684732 | Msa0724700:CDS | 35.0% |
| TTTCTTAACTTATGCCCCAA+GGG | + | chr5_1:23684731-23684750 | None:intergenic | 35.0% | |
| ATTTCTTAACTTATGCCCCA+AGG | + | chr5_1:23684732-23684751 | None:intergenic | 35.0% | |
| AAAGCATGTGAAGAATCTGT+AGG | + | chr5_1:23685166-23685185 | None:intergenic | 35.0% | |
| TGTGAGAAATCTGAATGATC+AGG | + | chr5_1:23685193-23685212 | None:intergenic | 35.0% | |
| AGATTTCTCACAAGATGAAG+AGG | - | chr5_1:23685201-23685220 | Msa0724700:intron | 35.0% | |
| ! | TCTTCAACTTTTGGTAAGCA+AGG | + | chr5_1:23685262-23685281 | None:intergenic | 35.0% |
| CAAAAGGTTTGATCTTCAAC+AGG | + | chr5_1:23685331-23685350 | None:intergenic | 35.0% | |
| TCAATAAGGCCAGAAACAAA+AGG | + | chr5_1:23685347-23685366 | None:intergenic | 35.0% | |
| ! | ATGGTTTGTGTTTGATGACA+TGG | - | chr5_1:23683850-23683869 | Msa0724700:intron | 35.0% |
| !! | GTGGTTAATTTTGAGAATGG+TGG | - | chr5_1:23683890-23683909 | Msa0724700:intron | 35.0% |
| !! | GTTAATTTTGAGAATGGTGG+TGG | - | chr5_1:23683893-23683912 | Msa0724700:intron | 35.0% |
| CTTGAGAAAGAAGAGAATTG+TGG | - | chr5_1:23683956-23683975 | Msa0724700:intron | 35.0% | |
| ACCATCAACAAGGAAAGAAA+AGG | - | chr5_1:23683999-23684018 | Msa0724700:intron | 35.0% | |
| ! | TCCTTTTCTTTCCTTGTTGA+TGG | + | chr5_1:23684003-23684022 | None:intergenic | 35.0% |
| ATCAACAAGGAAAGAAAAGG+AGG | - | chr5_1:23684002-23684021 | Msa0724700:intron | 35.0% | |
| AAAACAAGCTTGAACCTGAT+AGG | - | chr5_1:23684071-23684090 | Msa0724700:intron | 35.0% | |
| TTGACACACACAAACGAAAT+TGG | - | chr5_1:23684397-23684416 | Msa0724700:CDS | 35.0% | |
| AATTGTCTGATCTCAATCCA+GGG | - | chr5_1:23684550-23684569 | Msa0724700:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr5_1:23684713-23684732 | Msa0724700:CDS | 35.0% |
| TTTCTTAACTTATGCCCCAA+GGG | + | chr5_1:23684731-23684750 | None:intergenic | 35.0% | |
| ATTTCTTAACTTATGCCCCA+AGG | + | chr5_1:23684732-23684751 | None:intergenic | 35.0% | |
| AAAGCATGTGAAGAATCTGT+AGG | + | chr5_1:23685166-23685185 | None:intergenic | 35.0% | |
| TGTGAGAAATCTGAATGATC+AGG | + | chr5_1:23685193-23685212 | None:intergenic | 35.0% | |
| AGATTTCTCACAAGATGAAG+AGG | - | chr5_1:23685201-23685220 | Msa0724700:intron | 35.0% | |
| ! | TCTTCAACTTTTGGTAAGCA+AGG | + | chr5_1:23685262-23685281 | None:intergenic | 35.0% |
| CAAAAGGTTTGATCTTCAAC+AGG | + | chr5_1:23685331-23685350 | None:intergenic | 35.0% | |
| TCAATAAGGCCAGAAACAAA+AGG | + | chr5_1:23685347-23685366 | None:intergenic | 35.0% | |
| TGAAGCCCTTGAATCTCTTT+GGG | - | chr5_1:23683433-23683452 | Msa0724700:CDS | 40.0% | |
| GTGAACCCAAAGAGATTCAA+GGG | + | chr5_1:23683441-23683460 | None:intergenic | 40.0% | |
| TGTGAACCCAAAGAGATTCA+AGG | + | chr5_1:23683442-23683461 | None:intergenic | 40.0% | |
| ATCACCTTGAAAAGAAGCAG+AGG | + | chr5_1:23683465-23683484 | None:intergenic | 40.0% | |
| AGAAGTGAGAAGAATTGAGG+AGG | + | chr5_1:23683493-23683512 | None:intergenic | 40.0% | |
| ! | GTGTTTGATGACATGGATTC+AGG | - | chr5_1:23683857-23683876 | Msa0724700:intron | 40.0% |
| ! | GGATTCAGGTTCAAATTCAG+TGG | - | chr5_1:23683871-23683890 | Msa0724700:intron | 40.0% |
| ! | GCAAGTTGAACTTTCCTATC+AGG | + | chr5_1:23684088-23684107 | None:intergenic | 40.0% |
| GTTCAACTTGCAAAAGAGCT+TGG | - | chr5_1:23684097-23684116 | Msa0724700:intron | 40.0% | |
| AACCAAGGCAAGTTGCTATA+TGG | - | chr5_1:23684125-23684144 | Msa0724700:intron | 40.0% | |
| AACCATATAGCAACTTGCCT+TGG | + | chr5_1:23684130-23684149 | None:intergenic | 40.0% | |
| GAATTGTCTGATCTCAATCC+AGG | - | chr5_1:23684549-23684568 | Msa0724700:intron | 40.0% | |
| GTTAGTAAATCGATGATCCC+TGG | + | chr5_1:23684570-23684589 | None:intergenic | 40.0% | |
| !!! | TGTGTGTTTTGATAGGTGAC+CGG | + | chr5_1:23684618-23684637 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr5_1:23684712-23684731 | Msa0724700:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr5_1:23684714-23684733 | Msa0724700:CDS | 40.0% |
| TGAGGTGAATTGATTGCTTC+TGG | + | chr5_1:23684962-23684981 | None:intergenic | 40.0% | |
| CATATTAGGGAGTGACACTT+TGG | + | chr5_1:23685038-23685057 | None:intergenic | 40.0% | |
| ! | CAAAGTGTCACTCCCTAATA+TGG | - | chr5_1:23685036-23685055 | Msa0724700:intron | 40.0% |
| !! | CACATCACTTTTAGCTGAGT+TGG | + | chr5_1:23685086-23685105 | None:intergenic | 40.0% |
| ATAGCCCACATTGCAATGAT+GGG | - | chr5_1:23685116-23685135 | Msa0724700:intron | 40.0% | |
| TGTTCCCATCATTGCAATGT+GGG | + | chr5_1:23685123-23685142 | None:intergenic | 40.0% | |
| TTGTTCCCATCATTGCAATG+TGG | + | chr5_1:23685124-23685143 | None:intergenic | 40.0% | |
| TGAAGCCCTTGAATCTCTTT+GGG | - | chr5_1:23683433-23683452 | Msa0724700:CDS | 40.0% | |
| GTGAACCCAAAGAGATTCAA+GGG | + | chr5_1:23683441-23683460 | None:intergenic | 40.0% | |
| TGTGAACCCAAAGAGATTCA+AGG | + | chr5_1:23683442-23683461 | None:intergenic | 40.0% | |
| ATCACCTTGAAAAGAAGCAG+AGG | + | chr5_1:23683465-23683484 | None:intergenic | 40.0% | |
| AGAAGTGAGAAGAATTGAGG+AGG | + | chr5_1:23683493-23683512 | None:intergenic | 40.0% | |
| ! | GTGTTTGATGACATGGATTC+AGG | - | chr5_1:23683857-23683876 | Msa0724700:intron | 40.0% |
| ! | GGATTCAGGTTCAAATTCAG+TGG | - | chr5_1:23683871-23683890 | Msa0724700:intron | 40.0% |
| ! | GCAAGTTGAACTTTCCTATC+AGG | + | chr5_1:23684088-23684107 | None:intergenic | 40.0% |
| GTTCAACTTGCAAAAGAGCT+TGG | - | chr5_1:23684097-23684116 | Msa0724700:intron | 40.0% | |
| AACCAAGGCAAGTTGCTATA+TGG | - | chr5_1:23684125-23684144 | Msa0724700:intron | 40.0% | |
| AACCATATAGCAACTTGCCT+TGG | + | chr5_1:23684130-23684149 | None:intergenic | 40.0% | |
| GAATTGTCTGATCTCAATCC+AGG | - | chr5_1:23684549-23684568 | Msa0724700:intron | 40.0% | |
| GTTAGTAAATCGATGATCCC+TGG | + | chr5_1:23684570-23684589 | None:intergenic | 40.0% | |
| !!! | TGTGTGTTTTGATAGGTGAC+CGG | + | chr5_1:23684618-23684637 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr5_1:23684712-23684731 | Msa0724700:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr5_1:23684714-23684733 | Msa0724700:CDS | 40.0% |
| TGAGGTGAATTGATTGCTTC+TGG | + | chr5_1:23684962-23684981 | None:intergenic | 40.0% | |
| CATATTAGGGAGTGACACTT+TGG | + | chr5_1:23685038-23685057 | None:intergenic | 40.0% | |
| ! | CAAAGTGTCACTCCCTAATA+TGG | - | chr5_1:23685036-23685055 | Msa0724700:intron | 40.0% |
| !! | CACATCACTTTTAGCTGAGT+TGG | + | chr5_1:23685086-23685105 | None:intergenic | 40.0% |
| ATAGCCCACATTGCAATGAT+GGG | - | chr5_1:23685116-23685135 | Msa0724700:intron | 40.0% | |
| TGTTCCCATCATTGCAATGT+GGG | + | chr5_1:23685123-23685142 | None:intergenic | 40.0% | |
| TTGTTCCCATCATTGCAATG+TGG | + | chr5_1:23685124-23685143 | None:intergenic | 40.0% | |
| ! | CAAGGGCTTCAGAAGTACAA+GGG | + | chr5_1:23683424-23683443 | None:intergenic | 45.0% |
| ! | TCAAGGGCTTCAGAAGTACA+AGG | + | chr5_1:23683425-23683444 | None:intergenic | 45.0% |
| CTGAAGCCCTTGAATCTCTT+TGG | - | chr5_1:23683432-23683451 | Msa0724700:CDS | 45.0% | |
| ! | CACACCTCTGCTTCTTTTCA+AGG | - | chr5_1:23683458-23683477 | Msa0724700:CDS | 45.0% |
| GAAGCATGCTACCATCAACA+AGG | - | chr5_1:23683989-23684008 | Msa0724700:intron | 45.0% | |
| !! | AAGAGCTTGGTTTGCAACCA+AGG | - | chr5_1:23684110-23684129 | Msa0724700:intron | 45.0% |
| TTTGATAGGTGACCGGTGTT+CGG | + | chr5_1:23684611-23684630 | None:intergenic | 45.0% | |
| GATAGCCCACATTGCAATGA+TGG | - | chr5_1:23685115-23685134 | Msa0724700:intron | 45.0% | |
| ! | CAAGGGCTTCAGAAGTACAA+GGG | + | chr5_1:23683424-23683443 | None:intergenic | 45.0% |
| ! | TCAAGGGCTTCAGAAGTACA+AGG | + | chr5_1:23683425-23683444 | None:intergenic | 45.0% |
| CTGAAGCCCTTGAATCTCTT+TGG | - | chr5_1:23683432-23683451 | Msa0724700:CDS | 45.0% | |
| ! | CACACCTCTGCTTCTTTTCA+AGG | - | chr5_1:23683458-23683477 | Msa0724700:CDS | 45.0% |
| GAAGCATGCTACCATCAACA+AGG | - | chr5_1:23683989-23684008 | Msa0724700:intron | 45.0% | |
| !! | AAGAGCTTGGTTTGCAACCA+AGG | - | chr5_1:23684110-23684129 | Msa0724700:intron | 45.0% |
| TTTGATAGGTGACCGGTGTT+CGG | + | chr5_1:23684611-23684630 | None:intergenic | 45.0% | |
| GATAGCCCACATTGCAATGA+TGG | - | chr5_1:23685115-23685134 | Msa0724700:intron | 45.0% | |
| ! | ATGGCAGGTGGCAAGCTTTT+TGG | - | chr5_1:23683359-23683378 | Msa0724700:CDS | 50.0% |
| ! | ATGGCAGGTGGCAAGCTTTT+TGG | - | chr5_1:23683359-23683378 | Msa0724700:CDS | 50.0% |
| ! | GCAGGTGGCAAGCTTTTTGG+TGG | - | chr5_1:23683362-23683381 | Msa0724700:CDS | 55.0% |
| !! | TGGTGGTGGAAGCAACAGAG+TGG | - | chr5_1:23683907-23683926 | Msa0724700:intron | 55.0% |
| CATTCCGAGAGTCCGAACAC+CGG | - | chr5_1:23684596-23684615 | Msa0724700:CDS | 55.0% | |
| ! | GCAGGTGGCAAGCTTTTTGG+TGG | - | chr5_1:23683362-23683381 | Msa0724700:CDS | 55.0% |
| !! | TGGTGGTGGAAGCAACAGAG+TGG | - | chr5_1:23683907-23683926 | Msa0724700:intron | 55.0% |
| CATTCCGAGAGTCCGAACAC+CGG | - | chr5_1:23684596-23684615 | Msa0724700:CDS | 55.0% | |
| GTGACCGGTGTTCGGACTCT+CGG | + | chr5_1:23684603-23684622 | None:intergenic | 60.0% | |
| GTGACCGGTGTTCGGACTCT+CGG | + | chr5_1:23684603-23684622 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23683359 | 23685366 | 23683359 | ID=Msa0724700;Name=Msa0724700 |
| chr5_1 | mRNA | 23683359 | 23685366 | 23683359 | ID=Msa0724700-mRNA-1;Parent=Msa0724700;Name=Msa0724700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|316 |
| chr5_1 | exon | 23685246 | 23685366 | 23685246 | ID=Msa0724700-mRNA-1:exon:8747;Parent=Msa0724700-mRNA-1 |
| chr5_1 | exon | 23684590 | 23684846 | 23684590 | ID=Msa0724700-mRNA-1:exon:8746;Parent=Msa0724700-mRNA-1 |
| chr5_1 | exon | 23684346 | 23684441 | 23684346 | ID=Msa0724700-mRNA-1:exon:8745;Parent=Msa0724700-mRNA-1 |
| chr5_1 | exon | 23683359 | 23683835 | 23683359 | ID=Msa0724700-mRNA-1:exon:8744;Parent=Msa0724700-mRNA-1 |
| chr5_1 | CDS | 23685246 | 23685366 | 23685246 | ID=Msa0724700-mRNA-1:cds;Parent=Msa0724700-mRNA-1 |
| chr5_1 | CDS | 23684590 | 23684846 | 23684590 | ID=Msa0724700-mRNA-1:cds;Parent=Msa0724700-mRNA-1 |
| chr5_1 | CDS | 23684346 | 23684441 | 23684346 | ID=Msa0724700-mRNA-1:cds;Parent=Msa0724700-mRNA-1 |
| chr5_1 | CDS | 23683359 | 23683835 | 23683359 | ID=Msa0724700-mRNA-1:cds;Parent=Msa0724700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
