AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844710 MtrunA17_Chr5g0415941 94.895 333 8 1 1 333 1 324 0.0 643
Msa0844710 MtrunA17_Chr8g0362751 53.030 330 94 8 10 333 12 286 2.31e-97 289
Msa0844710 MtrunA17_Chr4g0060031 47.293 351 151 10 1 333 1 335 4.06e-79 244
Msa0844710 MtrunA17_Chr6g0450991 47.208 197 90 3 87 280 67 252 1.40e-42 149
Msa0844710 MtrunA17_Chr6g0453021 43.388 242 95 10 39 261 41 259 9.57e-40 141
Msa0844710 MtrunA17_Chr8g0381741 64.815 108 37 1 77 183 43 150 4.97e-39 140
Msa0844710 MtrunA17_Chr3g0123691 60.526 114 41 1 70 183 47 156 4.86e-38 137
Msa0844710 MtrunA17_Chr3g0119291 66.327 98 33 0 87 184 59 156 2.73e-37 134
Msa0844710 MtrunA17_Chr8g0362151 66.667 96 32 0 87 182 77 172 6.46e-37 134
Msa0844710 MtrunA17_Chr5g0416391 60.169 118 46 1 66 182 55 172 1.15e-36 133
Msa0844710 MtrunA17_Chr7g0217111 58.559 111 44 1 74 182 65 175 3.36e-32 121
Msa0844710 MtrunA17_Chr7g0265521 55.670 97 36 1 87 183 63 152 9.28e-27 105
Msa0844710 MtrunA17_Chr1g0179581 55.208 96 36 1 82 177 23 111 2.74e-26 100
Msa0844710 MtrunA17_Chr3g0127511 54.945 91 41 0 89 179 40 130 8.06e-26 103
Msa0844710 MtrunA17_Chr8g0346251 47.573 103 53 1 91 193 45 146 1.50e-24 100
Msa0844710 MtrunA17_Chr5g0403701 60.563 71 28 0 87 157 53 123 7.93e-20 86.3
Msa0844710 MtrunA17_Chr4g0055851 46.281 121 52 4 67 185 103 212 2.49e-19 86.7
Msa0844710 MtrunA17_Chr5g0403691 60.563 71 28 0 87 157 53 123 3.03e-19 85.1
Msa0844710 MtrunA17_Chr5g0399491 40.645 155 71 5 37 185 89 228 9.79e-19 85.1
Msa0844710 MtrunA17_Chr5g0400781 45.794 107 49 2 75 181 113 210 1.12e-17 81.6
Msa0844710 MtrunA17_Chr4g0071411 46.154 91 42 1 90 180 91 174 1.47e-17 80.5
Msa0844710 MtrunA17_Chr8g0335131 48.515 101 44 2 87 186 146 239 2.41e-17 81.3
Msa0844710 MtrunA17_Chr2g0308611 44.340 106 52 1 75 180 188 286 3.18e-17 81.3
Msa0844710 MtrunA17_Chr7g0258831 47.872 94 42 1 87 180 160 246 4.08e-17 80.5
Msa0844710 MtrunA17_Chr1g0175651 46.809 94 43 1 87 180 154 240 2.54e-16 78.2
Msa0844710 MtrunA17_Chr4g0054421 43.925 107 52 2 74 180 115 213 8.16e-16 76.3
Msa0844710 MtrunA17_Chr1g0151971 46.316 95 44 1 87 181 130 217 1.34e-15 75.9
Msa0844710 MtrunA17_Chr4g0044091 37.879 132 61 3 87 217 65 176 1.77e-15 73.9
Msa0844710 MtrunA17_Chr3g0135331 48.611 72 37 0 87 158 145 216 3.58e-13 69.3
Msa0844710 MtrunA17_Chr2g0299031 41.489 94 48 1 87 180 82 168 2.04e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844710 AT3G01470.1 47.396 192 74 7 87 273 68 237 4.00e-42 147
Msa0844710 AT4G40060.1 54.615 130 53 2 76 202 45 171 5.49e-41 145
Msa0844710 AT2G22430.1 68.041 97 31 0 87 183 62 158 5.44e-39 140
Msa0844710 AT5G65310.2 68.041 97 31 0 87 183 54 150 2.03e-38 138
Msa0844710 AT5G65310.1 68.041 97 31 0 87 183 72 168 2.61e-38 139
Msa0844710 AT1G69780.1 64.545 110 38 1 74 182 71 180 2.81e-38 138
Msa0844710 AT3G01220.1 41.071 224 113 6 50 261 46 262 3.50e-37 135
Msa0844710 AT5G15150.1 60.000 115 44 1 66 180 96 208 2.15e-36 134
Msa0844710 AT1G26960.1 59.091 110 44 1 74 182 57 166 1.30e-33 124
Msa0844710 AT1G27045.1 46.939 147 60 3 37 183 36 164 1.07e-32 121
Msa0844710 AT1G27045.5 60.825 97 38 0 87 183 25 121 1.01e-31 117
Msa0844710 AT1G27045.3 60.825 97 38 0 87 183 25 121 1.01e-31 117
Msa0844710 AT1G27045.2 60.825 97 38 0 87 183 17 113 1.48e-31 117
Msa0844710 AT1G27045.4 46.259 147 60 4 37 183 36 163 1.97e-30 116
Msa0844710 AT2G46680.1 49.541 109 55 0 83 191 28 136 1.36e-28 111
Msa0844710 AT3G61890.1 51.429 105 50 1 90 194 33 136 1.70e-27 108
Msa0844710 AT2G46680.2 53.763 93 43 0 83 175 28 120 8.41e-27 106
Msa0844710 AT5G03790.1 53.608 97 38 1 87 183 77 166 1.82e-25 102
Msa0844710 AT5G03790.2 54.839 93 35 1 87 179 77 162 2.29e-24 98.6
Msa0844710 AT2G36610.1 47.222 108 42 2 84 183 68 168 8.31e-24 96.7
Msa0844710 AT4G36740.2 48.182 110 50 1 87 196 56 158 1.39e-22 94.4
Msa0844710 AT4G36740.1 48.182 110 50 1 87 196 55 157 1.52e-22 94.4
Msa0844710 AT2G18550.1 45.378 119 58 1 87 205 61 172 2.09e-22 94.0
Msa0844710 AT5G53980.1 46.392 97 52 0 87 183 11 107 6.95e-21 88.2
Msa0844710 AT5G66700.1 58.333 72 30 0 87 158 71 142 4.25e-20 87.8
Msa0844710 AT5G06710.1 48.421 95 42 1 87 181 190 277 3.62e-17 81.6
Msa0844710 AT4G17460.1 45.217 115 49 4 75 186 125 228 1.08e-16 79.3
Msa0844710 AT2G01430.1 39.706 136 64 4 50 180 103 225 1.70e-16 79.0
Msa0844710 AT2G44910.1 47.000 100 45 2 87 185 163 255 4.27e-16 78.2
Msa0844710 AT3G60390.1 47.000 100 45 2 87 185 162 254 6.50e-16 77.8
Msa0844710 AT5G47370.1 38.931 131 65 3 57 186 107 223 7.47e-16 77.0
Msa0844710 AT2G22800.1 45.263 95 45 1 87 181 113 200 9.64e-16 76.6
Msa0844710 AT4G37790.1 44.681 94 45 1 87 180 126 212 1.79e-15 75.9
Msa0844710 AT4G16780.1 46.000 100 46 2 87 185 129 221 2.58e-15 75.5
Msa0844710 AT5G06710.4 58.491 53 22 0 87 139 190 242 1.49e-12 67.4
Msa0844710 AT1G70920.1 43.299 97 48 1 84 180 66 155 1.54e-12 66.2
Msa0844710 AT1G70920.2 43.299 97 48 1 84 180 36 125 2.21e-12 65.1
Msa0844710 AT2G01430.2 41.053 95 45 3 50 139 103 191 3.41e-12 65.5

Find 96 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAAATTCTTGTAATTT+TGG 0.015177 5_4:-23277303 Msa0844710:CDS
TCAATTACAAATTCAGAAAA+TGG 0.161025 5_4:-23277594 Msa0844710:CDS
CTGAAGCCCTTGAATCTCTT+TGG 0.177337 5_4:-23278957 Msa0844710:CDS
TGAACCTTGCCCTTCTGTTT+TGG 0.204900 5_4:+23278250 None:intergenic
CCAAAAGTTCTTTCCCTATA+AGG 0.235655 5_4:-23279061 Msa0844710:five_prime_UTR
CCTTATAGGGAAAGAACTTT+TGG 0.238704 5_4:+23279061 None:intergenic
ATTACTGGGAGAAATATTTA+AGG 0.241712 5_4:+23279278 None:intergenic
TTCTCTTTCTCTTTATCTCT+TGG 0.249115 5_4:+23277687 None:intergenic
TGCCATAAGAACAGCCTTAT+AGG 0.265185 5_4:+23279047 None:intergenic
GCAAGTTGAACTTTCCTATC+AGG 0.270065 5_4:+23278315 None:intergenic
TAGCAAACATCTTCAACTTT+TGG 0.273698 5_4:+23277336 None:intergenic
TCCCTATAAGGCTGTTCTTA+TGG 0.281279 5_4:-23279049 Msa0844710:exon
TGAAGCCCTTGAATCTCTTT+GGG 0.300479 5_4:-23278956 Msa0844710:CDS
TGAGGTGAATTGATTGCTTC+TGG 0.314138 5_4:+23277645 None:intergenic
CAAAGTGTCACTCCCTAATA+TGG 0.317058 5_4:-23277568 Msa0844710:CDS
AACCAAGGCAAGTTGCTATA+TGG 0.341312 5_4:-23278275 Msa0844710:CDS
GTGGAAATTTAAATTCAATA+AGG 0.341810 5_4:+23277246 None:intergenic
TCTCTTTCTCTTTATCTCTT+GGG 0.342274 5_4:+23277688 None:intergenic
TAAATATTTCTCCCAGTAAT+GGG 0.359910 5_4:-23279275 Msa0844710:five_prime_UTR
CAAAAGGTTTGATCTTCAAC+AGG 0.362492 5_4:+23277276 None:intergenic
AAAATTAAAGTTTCAAACTT+TGG 0.368181 5_4:+23277088 None:intergenic
GGAGAGATCATACCCATTAC+TGG 0.378520 5_4:+23279263 None:intergenic
TTTCTCAAGTTGTTGAAAGA+AGG 0.381022 5_4:+23278461 None:intergenic
TACTATAATGTGGGAATTGT+GGG 0.397120 5_4:+23279235 None:intergenic
GCCATAAGAACAGCCTTATA+GGG 0.397680 5_4:+23279048 None:intergenic
TACTAAAGAATAAAATCAAA+AGG 0.409706 5_4:-23277161 Msa0844710:three_prime_UTR
CAGAGAGAAGAGGGTAGAGA+GGG 0.423635 5_4:+23279379 None:intergenic
GATAGCCCACATTGCAATGA+TGG 0.423802 5_4:-23277489 Msa0844710:CDS
ATTGGATCTTTGTTGTTATG+AGG 0.430991 5_4:+23277627 None:intergenic
TCAGAGAGAAGAGGGTAGAG+AGG 0.435859 5_4:+23279378 None:intergenic
TTAAATATTTCTCCCAGTAA+TGG 0.437861 5_4:-23279276 Msa0844710:five_prime_UTR
TAATCTAAAACTCTCTTGTA+AGG 0.439475 5_4:-23279104 Msa0844710:five_prime_UTR
CACTGCAGATGTAACTCTAC+TGG 0.447664 5_4:-23277226 Msa0844710:three_prime_UTR
GGGTGTCAGAAGTAATAAAT+TGG 0.458938 5_4:+23279302 None:intergenic
TTACTATAATGTGGGAATTG+TGG 0.463869 5_4:+23279234 None:intergenic
GTAATTGAGATTATATCCAT+TGG 0.466626 5_4:+23277609 None:intergenic
TTCTCAAGTTGTTGAAAGAA+GGG 0.467149 5_4:+23278462 None:intergenic
AAAGTTTCAAACTTTGGCTA+AGG 0.472120 5_4:+23277094 None:intergenic
CATATTAGGGAGTGACACTT+TGG 0.480614 5_4:+23277569 None:intergenic
GTTCAACTTGCAAAAGAGCT+TGG 0.481261 5_4:-23278303 Msa0844710:CDS
AACCATATAGCAACTTGCCT+TGG 0.481745 5_4:+23278273 None:intergenic
TGTGAGAAATCTGAATGATC+AGG 0.485138 5_4:+23277414 None:intergenic
CAATTACAAATTCAGAAAAT+GGG 0.485544 5_4:-23277593 Msa0844710:CDS
GATTCTTTCTTATGTGTGGT+GGG 0.495733 5_4:+23279463 None:intergenic
GAATGACAAGTTAAAAGAAG+AGG 0.495747 5_4:-23278142 Msa0844710:intron
GGTTGGGGAGAGTTGAGAGT+TGG 0.496766 5_4:+23279402 None:intergenic
TATAAGGCTGTTCTTATGGC+AGG 0.496797 5_4:-23279045 Msa0844710:exon
TTACTGGGAGAAATATTTAA+GGG 0.498128 5_4:+23279279 None:intergenic
TCAATAAGGCCAGAAACAAA+AGG 0.504416 5_4:+23277260 None:intergenic
AAAACAAGCTTGAACCTGAT+AGG 0.509669 5_4:-23278329 Msa0844710:CDS
TTTGGGTAGGTTGGTAAGTG+TGG 0.510689 5_4:+23279079 None:intergenic
AAGAGCTTGGTTTGCAACCA+AGG 0.513381 5_4:-23278290 Msa0844710:CDS
GAGAGATTCTTTCTTATGTG+TGG 0.519324 5_4:+23279459 None:intergenic
AGATTCTTTCTTATGTGTGG+TGG 0.520280 5_4:+23279462 None:intergenic
ACCATCAACAAGGAAAGAAA+AGG 0.521051 5_4:-23278401 Msa0844710:CDS
TGTGAACCCAAAGAGATTCA+AGG 0.525903 5_4:+23278950 None:intergenic
AGAGAGAAGAGGGTAGAGAG+GGG 0.532459 5_4:+23279380 None:intergenic
AATAAATTGGTGGTCAGAGA+AGG 0.539262 5_4:+23279315 None:intergenic
GTTGAGGATTACTATAATGT+GGG 0.546123 5_4:+23279226 None:intergenic
AGATTTCTCACAAGATGAAG+AGG 0.546898 5_4:-23277403 Msa0844710:CDS
ATTCTTTCTTATGTGTGGTG+GGG 0.548077 5_4:+23279464 None:intergenic
TGTTCCCATCATTGCAATGT+GGG 0.548653 5_4:+23277484 None:intergenic
ACTAAAGAATAAAATCAAAA+GGG 0.549706 5_4:-23277160 Msa0844710:three_prime_UTR
GAATTTATGACGAAAGAAGC+AGG 0.555083 5_4:+23279202 None:intergenic
TGTTGAGGATTACTATAATG+TGG 0.560635 5_4:+23279225 None:intergenic
TCATAACAACAAAGATCCAA+TGG 0.563990 5_4:-23277625 Msa0844710:CDS
GCAGAAGGTCAGAGAGAAGA+GGG 0.566324 5_4:+23279370 None:intergenic
TCAAGGGCTTCAGAAGTACA+AGG 0.569376 5_4:+23278967 None:intergenic
GAATTCAGGTTCAAATTCAG+TGG 0.573234 5_4:-23278532 Msa0844710:intron
GACGAAAGAAGCAGGTGTTG+AGG 0.573372 5_4:+23279210 None:intergenic
GAGAGAAGAGGGTAGAGAGG+GGG 0.577741 5_4:+23279381 None:intergenic
GTGAACCCAAAGAGATTCAA+GGG 0.581702 5_4:+23278951 None:intergenic
CTATATGGTTCCAAAACAGA+AGG 0.583686 5_4:-23278260 Msa0844710:CDS
ATAGCCCACATTGCAATGAT+GGG 0.583931 5_4:-23277488 Msa0844710:CDS
CAGTAGAGTTACATCTGCAG+TGG 0.590442 5_4:+23277227 None:intergenic
ATGTGGGAATTGTGGGAGTG+AGG 0.596949 5_4:+23279242 None:intergenic
CTTGAGAAAGAAGAGAATTG+TGG 0.599550 5_4:-23278447 Msa0844710:CDS
GGGTTACATTGTTATTAACA+AGG 0.600439 5_4:-23277140 Msa0844710:three_prime_UTR
TGTCAGAAGTAATAAATTGG+TGG 0.604676 5_4:+23279305 None:intergenic
TGTGGTGGGGAACTTTGATG+TGG 0.605956 5_4:+23279477 None:intergenic
GAGAGATCATACCCATTACT+GGG 0.606961 5_4:+23279264 None:intergenic
GGCAGAAGGTCAGAGAGAAG+AGG 0.608301 5_4:+23279369 None:intergenic
AAAGCATGTGAAGAATCTGT+AGG 0.619583 5_4:+23277441 None:intergenic
ATCAACAAGGAAAGAAAAGG+AGG 0.621166 5_4:-23278398 Msa0844710:CDS
TACTGGGAGAAATATTTAAG+GGG 0.628855 5_4:+23279280 None:intergenic
ATCACCTTGAAAAGAAGCAG+AGG 0.635119 5_4:+23278927 None:intergenic
CTGGGAGAAATATTTAAGGG+GGG 0.644250 5_4:+23279282 None:intergenic
TTGTTCCCATCATTGCAATG+TGG 0.645404 5_4:+23277483 None:intergenic
ACTGGGAGAAATATTTAAGG+GGG 0.646785 5_4:+23279281 None:intergenic
AAGGCTGTTCTTATGGCAGG+TGG 0.647915 5_4:-23279042 Msa0844710:exon
GGTTCCAAAACAGAAGGGCA+AGG 0.651221 5_4:-23278254 Msa0844710:CDS
TATATGGTTCCAAAACAGAA+GGG 0.680215 5_4:-23278259 Msa0844710:CDS
AAAAGGTTTGATCTTCAACA+GGG 0.685076 5_4:+23277277 None:intergenic
GAAGCATGTTACCATCAACA+AGG 0.696274 5_4:-23278411 Msa0844710:CDS
CAAGGGCTTCAGAAGTACAA+GGG 0.720149 5_4:+23278968 None:intergenic
TGGTGGTGGAAGCAACAGAG+TGG 0.722441 5_4:-23278496 Msa0844710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAGACTATTTTTTTA+TGG + chr5_4:23277910-23277929 None:intergenic 10.0%
!!! ATTTTTTATTTTGTTACAAT+AGG - chr5_4:23278814-23278833 Msa0844710:intron 10.0%
!!! TAAAAAAGACTATTTTTTTA+TGG + chr5_4:23277910-23277929 None:intergenic 10.0%
!!! ATTTTTTATTTTGTTACAAT+AGG - chr5_4:23278814-23278833 Msa0844710:intron 10.0%
!!! TGAAAAAGACTAATTTTATA+TGG + chr5_4:23277945-23277964 None:intergenic 15.0%
!! TGAAAATTTACATTAGAATT+TGG + chr5_4:23278548-23278567 None:intergenic 15.0%
!!! ATGAAAATTCTTGTAATTTT+GGG - chr5_4:23279248-23279267 Msa0844710:five_prime_UTR 15.0%
!! TACTAAAGAATAAAATCAAA+AGG - chr5_4:23279389-23279408 Msa0844710:five_prime_UTR 15.0%
!! ACTAAAGAATAAAATCAAAA+GGG - chr5_4:23279390-23279409 Msa0844710:five_prime_UTR 15.0%
!! AAAATTAAAGTTTCAAACTT+TGG + chr5_4:23279465-23279484 None:intergenic 15.0%
!!! TGAAAAAGACTAATTTTATA+TGG + chr5_4:23277945-23277964 None:intergenic 15.0%
!! TGAAAATTTACATTAGAATT+TGG + chr5_4:23278548-23278567 None:intergenic 15.0%
!!! ATGAAAATTCTTGTAATTTT+GGG - chr5_4:23279248-23279267 Msa0844710:five_prime_UTR 15.0%
!! TACTAAAGAATAAAATCAAA+AGG - chr5_4:23279389-23279408 Msa0844710:five_prime_UTR 15.0%
!! ACTAAAGAATAAAATCAAAA+GGG - chr5_4:23279390-23279409 Msa0844710:five_prime_UTR 15.0%
!! AAAATTAAAGTTTCAAACTT+TGG + chr5_4:23279465-23279484 None:intergenic 15.0%
!!! ACCTTTTTTTTTACTTCTTA+TGG - chr5_4:23277401-23277420 Msa0844710:CDS 20.0%
!!! CCTTTTTTTTTACTTCTTAT+GGG - chr5_4:23277402-23277421 Msa0844710:CDS 20.0%
!!! CTTTTTTTTTACTTCTTATG+GGG - chr5_4:23277403-23277422 Msa0844710:CDS 20.0%
!! CATATAGTTGAAATATAACA+TGG - chr5_4:23277978-23277997 Msa0844710:intron 20.0%
!! CAAACTTTATTAAAGTAAAG+AGG + chr5_4:23278740-23278759 None:intergenic 20.0%
!! AATGAGTTAATGATTGAATA+TGG - chr5_4:23278774-23278793 Msa0844710:intron 20.0%
!! ATGAGTTAATGATTGAATAT+GGG - chr5_4:23278775-23278794 Msa0844710:intron 20.0%
!! TCAATTACAAATTCAGAAAA+TGG - chr5_4:23278956-23278975 Msa0844710:CDS 20.0%
!! CAATTACAAATTCAGAAAAT+GGG - chr5_4:23278957-23278976 Msa0844710:CDS 20.0%
!!! TACATTTTAGTACCATATTA+GGG + chr5_4:23278997-23279016 None:intergenic 20.0%
!!! TTACATTTTAGTACCATATT+AGG + chr5_4:23278998-23279017 None:intergenic 20.0%
!!! AATTACAAGAATTTTCATGT+GGG + chr5_4:23279246-23279265 None:intergenic 20.0%
!!! AAATTACAAGAATTTTCATG+TGG + chr5_4:23279247-23279266 None:intergenic 20.0%
!!! CATGAAAATTCTTGTAATTT+TGG - chr5_4:23279247-23279266 Msa0844710:five_prime_UTR 20.0%
!! GTGGAAATTTAAATTCAATA+AGG + chr5_4:23279307-23279326 None:intergenic 20.0%
!!! TGATTTTATTCTTTAGTAGA+AGG + chr5_4:23279387-23279406 None:intergenic 20.0%
!!! ACCTTTTTTTTTACTTCTTA+TGG - chr5_4:23277401-23277420 Msa0844710:CDS 20.0%
!!! CCTTTTTTTTTACTTCTTAT+GGG - chr5_4:23277402-23277421 Msa0844710:CDS 20.0%
!!! CTTTTTTTTTACTTCTTATG+GGG - chr5_4:23277403-23277422 Msa0844710:CDS 20.0%
!! CATATAGTTGAAATATAACA+TGG - chr5_4:23277978-23277997 Msa0844710:intron 20.0%
!! CAAACTTTATTAAAGTAAAG+AGG + chr5_4:23278740-23278759 None:intergenic 20.0%
!! AATGAGTTAATGATTGAATA+TGG - chr5_4:23278774-23278793 Msa0844710:intron 20.0%
!! ATGAGTTAATGATTGAATAT+GGG - chr5_4:23278775-23278794 Msa0844710:intron 20.0%
!! TCAATTACAAATTCAGAAAA+TGG - chr5_4:23278956-23278975 Msa0844710:CDS 20.0%
!! CAATTACAAATTCAGAAAAT+GGG - chr5_4:23278957-23278976 Msa0844710:CDS 20.0%
!!! TACATTTTAGTACCATATTA+GGG + chr5_4:23278997-23279016 None:intergenic 20.0%
!!! TTACATTTTAGTACCATATT+AGG + chr5_4:23278998-23279017 None:intergenic 20.0%
!!! AATTACAAGAATTTTCATGT+GGG + chr5_4:23279246-23279265 None:intergenic 20.0%
!!! AAATTACAAGAATTTTCATG+TGG + chr5_4:23279247-23279266 None:intergenic 20.0%
!!! CATGAAAATTCTTGTAATTT+TGG - chr5_4:23279247-23279266 Msa0844710:five_prime_UTR 20.0%
!! GTGGAAATTTAAATTCAATA+AGG + chr5_4:23279307-23279326 None:intergenic 20.0%
!!! TGATTTTATTCTTTAGTAGA+AGG + chr5_4:23279387-23279406 None:intergenic 20.0%
! TTACTGGGAGAAATATTTAA+GGG + chr5_4:23277274-23277293 None:intergenic 25.0%
! ATTACTGGGAGAAATATTTA+AGG + chr5_4:23277275-23277294 None:intergenic 25.0%
! TTAAATATTTCTCCCAGTAA+TGG - chr5_4:23277274-23277293 Msa0844710:CDS 25.0%
! TAAATATTTCTCCCAGTAAT+GGG - chr5_4:23277275-23277294 Msa0844710:CDS 25.0%
!!! AAAAGGTGTTGATTTTCAAA+GGG + chr5_4:23277388-23277407 None:intergenic 25.0%
!!! AAAAAGGTGTTGATTTTCAA+AGG + chr5_4:23277389-23277408 None:intergenic 25.0%
! CCCATAAGAAGTAAAAAAAA+AGG + chr5_4:23277405-23277424 None:intergenic 25.0%
!!! CAAGAGAGTTTTAGATTAAT+GGG + chr5_4:23277444-23277463 None:intergenic 25.0%
!!! ACAAGAGAGTTTTAGATTAA+TGG + chr5_4:23277445-23277464 None:intergenic 25.0%
!! TAATCTAAAACTCTCTTGTA+AGG - chr5_4:23277446-23277465 Msa0844710:CDS 25.0%
! CAATTCAAATATACACATGA+TGG + chr5_4:23277719-23277738 None:intergenic 25.0%
! CATGTGTATATTTGAATTGA+CGG - chr5_4:23277720-23277739 Msa0844710:intron 25.0%
! TTTCTTAAGATCATGAAAGT+GGG - chr5_4:23277861-23277880 Msa0844710:intron 25.0%
!! ATTTCTTGAAAAGAGTTTTG+AGG - chr5_4:23278195-23278214 Msa0844710:CDS 25.0%
! AAACAGCTTGAAAAAGATTA+TGG - chr5_4:23278328-23278347 Msa0844710:CDS 25.0%
! TCAATCATTAACTCATTAGT+GGG + chr5_4:23278771-23278790 None:intergenic 25.0%
! TTCAATCATTAACTCATTAG+TGG + chr5_4:23278772-23278791 None:intergenic 25.0%
! TGAGTTAATGATTGAATATG+GGG - chr5_4:23278776-23278795 Msa0844710:intron 25.0%
! GTAATTGAGATTATATCCAT+TGG + chr5_4:23278944-23278963 None:intergenic 25.0%
! TCTACTGGAAGAAATAAAAA+TGG - chr5_4:23279339-23279358 Msa0844710:five_prime_UTR 25.0%
! TTACTGGGAGAAATATTTAA+GGG + chr5_4:23277274-23277293 None:intergenic 25.0%
! ATTACTGGGAGAAATATTTA+AGG + chr5_4:23277275-23277294 None:intergenic 25.0%
! TTAAATATTTCTCCCAGTAA+TGG - chr5_4:23277274-23277293 Msa0844710:CDS 25.0%
! TAAATATTTCTCCCAGTAAT+GGG - chr5_4:23277275-23277294 Msa0844710:CDS 25.0%
!!! AAAAGGTGTTGATTTTCAAA+GGG + chr5_4:23277388-23277407 None:intergenic 25.0%
!!! AAAAAGGTGTTGATTTTCAA+AGG + chr5_4:23277389-23277408 None:intergenic 25.0%
! CCCATAAGAAGTAAAAAAAA+AGG + chr5_4:23277405-23277424 None:intergenic 25.0%
!!! CAAGAGAGTTTTAGATTAAT+GGG + chr5_4:23277444-23277463 None:intergenic 25.0%
!!! ACAAGAGAGTTTTAGATTAA+TGG + chr5_4:23277445-23277464 None:intergenic 25.0%
!! TAATCTAAAACTCTCTTGTA+AGG - chr5_4:23277446-23277465 Msa0844710:CDS 25.0%
! CAATTCAAATATACACATGA+TGG + chr5_4:23277719-23277738 None:intergenic 25.0%
! CATGTGTATATTTGAATTGA+CGG - chr5_4:23277720-23277739 Msa0844710:intron 25.0%
! TTTCTTAAGATCATGAAAGT+GGG - chr5_4:23277861-23277880 Msa0844710:intron 25.0%
!! ATTTCTTGAAAAGAGTTTTG+AGG - chr5_4:23278195-23278214 Msa0844710:CDS 25.0%
! AAACAGCTTGAAAAAGATTA+TGG - chr5_4:23278328-23278347 Msa0844710:CDS 25.0%
! TCAATCATTAACTCATTAGT+GGG + chr5_4:23278771-23278790 None:intergenic 25.0%
! TTCAATCATTAACTCATTAG+TGG + chr5_4:23278772-23278791 None:intergenic 25.0%
! TGAGTTAATGATTGAATATG+GGG - chr5_4:23278776-23278795 Msa0844710:intron 25.0%
! GTAATTGAGATTATATCCAT+TGG + chr5_4:23278944-23278963 None:intergenic 25.0%
! TCTACTGGAAGAAATAAAAA+TGG - chr5_4:23279339-23279358 Msa0844710:five_prime_UTR 25.0%
TGTCAGAAGTAATAAATTGG+TGG + chr5_4:23277248-23277267 None:intergenic 30.0%
TACTGGGAGAAATATTTAAG+GGG + chr5_4:23277273-23277292 None:intergenic 30.0%
TACTATAATGTGGGAATTGT+GGG + chr5_4:23277318-23277337 None:intergenic 30.0%
TTACTATAATGTGGGAATTG+TGG + chr5_4:23277319-23277338 None:intergenic 30.0%
GTTGAGGATTACTATAATGT+GGG + chr5_4:23277327-23277346 None:intergenic 30.0%
TGTTGAGGATTACTATAATG+TGG + chr5_4:23277328-23277347 None:intergenic 30.0%
! CTTATAGGGAAAGAACTTTT+GGG + chr5_4:23277491-23277510 None:intergenic 30.0%
AAAAGAAGTGAGAAGAATTG+AGG + chr5_4:23277657-23277676 None:intergenic 30.0%
CAACTGAAAGTTTGTATTGA+CGG + chr5_4:23277781-23277800 None:intergenic 30.0%
GTTTCTTAAGATCATGAAAG+TGG - chr5_4:23277860-23277879 Msa0844710:intron 30.0%
!! TCAGTGGTTAATTTTGAGAA+TGG - chr5_4:23278034-23278053 Msa0844710:intron 30.0%
! TTCTCAAGTTGTTGAAAGAA+GGG + chr5_4:23278091-23278110 None:intergenic 30.0%
! TTTCTCAAGTTGTTGAAAGA+AGG + chr5_4:23278092-23278111 None:intergenic 30.0%
TATATGGTTCCAAAACAGAA+GGG - chr5_4:23278291-23278310 Msa0844710:CDS 30.0%
GAATGACAAGTTAAAAGAAG+AGG - chr5_4:23278408-23278427 Msa0844710:CDS 30.0%
!!! ATGTGTATGTGTGTTTTGAT+AGG + chr5_4:23278675-23278694 None:intergenic 30.0%
TCTCTTTCTCTTTATCTCTT+GGG + chr5_4:23278865-23278884 None:intergenic 30.0%
TTCTCTTTCTCTTTATCTCT+TGG + chr5_4:23278866-23278885 None:intergenic 30.0%
!! ATTGGATCTTTGTTGTTATG+AGG + chr5_4:23278926-23278945 None:intergenic 30.0%
TCATAACAACAAAGATCCAA+TGG - chr5_4:23278925-23278944 Msa0844710:intron 30.0%
! TAGCAAACATCTTCAACTTT+TGG + chr5_4:23279217-23279236 None:intergenic 30.0%
AAAAGGTTTGATCTTCAACA+GGG + chr5_4:23279276-23279295 None:intergenic 30.0%
!! AAGATCAAACCTTTTGTTTC+TGG - chr5_4:23279281-23279300 Msa0844710:five_prime_UTR 30.0%
! GGGTTACATTGTTATTAACA+AGG - chr5_4:23279410-23279429 Msa0844710:five_prime_UTR 30.0%
AAAGTTTCAAACTTTGGCTA+AGG + chr5_4:23279459-23279478 None:intergenic 30.0%
TGTCAGAAGTAATAAATTGG+TGG + chr5_4:23277248-23277267 None:intergenic 30.0%
TACTGGGAGAAATATTTAAG+GGG + chr5_4:23277273-23277292 None:intergenic 30.0%
TACTATAATGTGGGAATTGT+GGG + chr5_4:23277318-23277337 None:intergenic 30.0%
TTACTATAATGTGGGAATTG+TGG + chr5_4:23277319-23277338 None:intergenic 30.0%
GTTGAGGATTACTATAATGT+GGG + chr5_4:23277327-23277346 None:intergenic 30.0%
TGTTGAGGATTACTATAATG+TGG + chr5_4:23277328-23277347 None:intergenic 30.0%
! CTTATAGGGAAAGAACTTTT+GGG + chr5_4:23277491-23277510 None:intergenic 30.0%
AAAAGAAGTGAGAAGAATTG+AGG + chr5_4:23277657-23277676 None:intergenic 30.0%
CAACTGAAAGTTTGTATTGA+CGG + chr5_4:23277781-23277800 None:intergenic 30.0%
GTTTCTTAAGATCATGAAAG+TGG - chr5_4:23277860-23277879 Msa0844710:intron 30.0%
!! TCAGTGGTTAATTTTGAGAA+TGG - chr5_4:23278034-23278053 Msa0844710:intron 30.0%
! TTCTCAAGTTGTTGAAAGAA+GGG + chr5_4:23278091-23278110 None:intergenic 30.0%
! TTTCTCAAGTTGTTGAAAGA+AGG + chr5_4:23278092-23278111 None:intergenic 30.0%
TATATGGTTCCAAAACAGAA+GGG - chr5_4:23278291-23278310 Msa0844710:CDS 30.0%
GAATGACAAGTTAAAAGAAG+AGG - chr5_4:23278408-23278427 Msa0844710:CDS 30.0%
!!! ATGTGTATGTGTGTTTTGAT+AGG + chr5_4:23278675-23278694 None:intergenic 30.0%
TCTCTTTCTCTTTATCTCTT+GGG + chr5_4:23278865-23278884 None:intergenic 30.0%
TTCTCTTTCTCTTTATCTCT+TGG + chr5_4:23278866-23278885 None:intergenic 30.0%
!! ATTGGATCTTTGTTGTTATG+AGG + chr5_4:23278926-23278945 None:intergenic 30.0%
TCATAACAACAAAGATCCAA+TGG - chr5_4:23278925-23278944 Msa0844710:intron 30.0%
! TAGCAAACATCTTCAACTTT+TGG + chr5_4:23279217-23279236 None:intergenic 30.0%
AAAAGGTTTGATCTTCAACA+GGG + chr5_4:23279276-23279295 None:intergenic 30.0%
!! AAGATCAAACCTTTTGTTTC+TGG - chr5_4:23279281-23279300 Msa0844710:five_prime_UTR 30.0%
! GGGTTACATTGTTATTAACA+AGG - chr5_4:23279410-23279429 Msa0844710:five_prime_UTR 30.0%
AAAGTTTCAAACTTTGGCTA+AGG + chr5_4:23279459-23279478 None:intergenic 30.0%
ATTCTTTCTTATGTGTGGTG+GGG + chr5_4:23277089-23277108 None:intergenic 35.0%
GATTCTTTCTTATGTGTGGT+GGG + chr5_4:23277090-23277109 None:intergenic 35.0%
AGATTCTTTCTTATGTGTGG+TGG + chr5_4:23277091-23277110 None:intergenic 35.0%
GAGAGATTCTTTCTTATGTG+TGG + chr5_4:23277094-23277113 None:intergenic 35.0%
! TGCTTGTGAGTTTTCAAAGA+GGG + chr5_4:23277206-23277225 None:intergenic 35.0%
! ATGCTTGTGAGTTTTCAAAG+AGG + chr5_4:23277207-23277226 None:intergenic 35.0%
! AATAAATTGGTGGTCAGAGA+AGG + chr5_4:23277238-23277257 None:intergenic 35.0%
GGGTGTCAGAAGTAATAAAT+TGG + chr5_4:23277251-23277270 None:intergenic 35.0%
ACTGGGAGAAATATTTAAGG+GGG + chr5_4:23277272-23277291 None:intergenic 35.0%
GAATTTATGACGAAAGAAGC+AGG + chr5_4:23277351-23277370 None:intergenic 35.0%
! CCTTATAGGGAAAGAACTTT+TGG + chr5_4:23277492-23277511 None:intergenic 35.0%
CCAAAAGTTCTTTCCCTATA+AGG - chr5_4:23277489-23277508 Msa0844710:CDS 35.0%
CGTCAATACAAACTTTCAGT+TGG - chr5_4:23277779-23277798 Msa0844710:intron 35.0%
! GTGTTTGATGACATGAATTC+AGG - chr5_4:23278004-23278023 Msa0844710:intron 35.0%
! GAATTCAGGTTCAAATTCAG+TGG - chr5_4:23278018-23278037 Msa0844710:intron 35.0%
!! GTGGTTAATTTTGAGAATGG+TGG - chr5_4:23278037-23278056 Msa0844710:intron 35.0%
!! GTTAATTTTGAGAATGGTGG+TGG - chr5_4:23278040-23278059 Msa0844710:intron 35.0%
CTTGAGAAAGAAGAGAATTG+TGG - chr5_4:23278103-23278122 Msa0844710:intron 35.0%
ACCATCAACAAGGAAAGAAA+AGG - chr5_4:23278149-23278168 Msa0844710:CDS 35.0%
! TCCTTTTCTTTCCTTGTTGA+TGG + chr5_4:23278153-23278172 None:intergenic 35.0%
ATCAACAAGGAAAGAAAAGG+AGG - chr5_4:23278152-23278171 Msa0844710:CDS 35.0%
AAAACAAGCTTGAACCTGAT+AGG - chr5_4:23278221-23278240 Msa0844710:CDS 35.0%
CTATATGGTTCCAAAACAGA+AGG - chr5_4:23278290-23278309 Msa0844710:CDS 35.0%
TTGACACACACAAACGAAAT+TGG - chr5_4:23278447-23278466 Msa0844710:CDS 35.0%
GTCAACACATCAGTAAATGT+TGG - chr5_4:23278506-23278525 Msa0844710:CDS 35.0%
AATTGTCTGATCTCAATCCA+AGG - chr5_4:23278600-23278619 Msa0844710:intron 35.0%
GTTAGTAAATCGATGATCCT+TGG + chr5_4:23278620-23278639 None:intergenic 35.0%
AAAGCATGTGAAGAATCTGT+AGG + chr5_4:23279112-23279131 None:intergenic 35.0%
TGTGAGAAATCTGAATGATC+AGG + chr5_4:23279139-23279158 None:intergenic 35.0%
AGATTTCTCACAAGATGAAG+AGG - chr5_4:23279147-23279166 Msa0844710:five_prime_UTR 35.0%
! TCTTCAACTTTTGGTAAGCA+AGG + chr5_4:23279208-23279227 None:intergenic 35.0%
CAAAAGGTTTGATCTTCAAC+AGG + chr5_4:23279277-23279296 None:intergenic 35.0%
TCAATAAGGCCAGAAACAAA+AGG + chr5_4:23279293-23279312 None:intergenic 35.0%
ATTCTTTCTTATGTGTGGTG+GGG + chr5_4:23277089-23277108 None:intergenic 35.0%
GATTCTTTCTTATGTGTGGT+GGG + chr5_4:23277090-23277109 None:intergenic 35.0%
AGATTCTTTCTTATGTGTGG+TGG + chr5_4:23277091-23277110 None:intergenic 35.0%
GAGAGATTCTTTCTTATGTG+TGG + chr5_4:23277094-23277113 None:intergenic 35.0%
! TGCTTGTGAGTTTTCAAAGA+GGG + chr5_4:23277206-23277225 None:intergenic 35.0%
! ATGCTTGTGAGTTTTCAAAG+AGG + chr5_4:23277207-23277226 None:intergenic 35.0%
! AATAAATTGGTGGTCAGAGA+AGG + chr5_4:23277238-23277257 None:intergenic 35.0%
GGGTGTCAGAAGTAATAAAT+TGG + chr5_4:23277251-23277270 None:intergenic 35.0%
ACTGGGAGAAATATTTAAGG+GGG + chr5_4:23277272-23277291 None:intergenic 35.0%
GAATTTATGACGAAAGAAGC+AGG + chr5_4:23277351-23277370 None:intergenic 35.0%
! CCTTATAGGGAAAGAACTTT+TGG + chr5_4:23277492-23277511 None:intergenic 35.0%
CCAAAAGTTCTTTCCCTATA+AGG - chr5_4:23277489-23277508 Msa0844710:CDS 35.0%
CGTCAATACAAACTTTCAGT+TGG - chr5_4:23277779-23277798 Msa0844710:intron 35.0%
! GTGTTTGATGACATGAATTC+AGG - chr5_4:23278004-23278023 Msa0844710:intron 35.0%
! GAATTCAGGTTCAAATTCAG+TGG - chr5_4:23278018-23278037 Msa0844710:intron 35.0%
!! GTGGTTAATTTTGAGAATGG+TGG - chr5_4:23278037-23278056 Msa0844710:intron 35.0%
!! GTTAATTTTGAGAATGGTGG+TGG - chr5_4:23278040-23278059 Msa0844710:intron 35.0%
CTTGAGAAAGAAGAGAATTG+TGG - chr5_4:23278103-23278122 Msa0844710:intron 35.0%
ACCATCAACAAGGAAAGAAA+AGG - chr5_4:23278149-23278168 Msa0844710:CDS 35.0%
! TCCTTTTCTTTCCTTGTTGA+TGG + chr5_4:23278153-23278172 None:intergenic 35.0%
ATCAACAAGGAAAGAAAAGG+AGG - chr5_4:23278152-23278171 Msa0844710:CDS 35.0%
AAAACAAGCTTGAACCTGAT+AGG - chr5_4:23278221-23278240 Msa0844710:CDS 35.0%
CTATATGGTTCCAAAACAGA+AGG - chr5_4:23278290-23278309 Msa0844710:CDS 35.0%
TTGACACACACAAACGAAAT+TGG - chr5_4:23278447-23278466 Msa0844710:CDS 35.0%
GTCAACACATCAGTAAATGT+TGG - chr5_4:23278506-23278525 Msa0844710:CDS 35.0%
AATTGTCTGATCTCAATCCA+AGG - chr5_4:23278600-23278619 Msa0844710:intron 35.0%
GTTAGTAAATCGATGATCCT+TGG + chr5_4:23278620-23278639 None:intergenic 35.0%
AAAGCATGTGAAGAATCTGT+AGG + chr5_4:23279112-23279131 None:intergenic 35.0%
TGTGAGAAATCTGAATGATC+AGG + chr5_4:23279139-23279158 None:intergenic 35.0%
AGATTTCTCACAAGATGAAG+AGG - chr5_4:23279147-23279166 Msa0844710:five_prime_UTR 35.0%
! TCTTCAACTTTTGGTAAGCA+AGG + chr5_4:23279208-23279227 None:intergenic 35.0%
CAAAAGGTTTGATCTTCAAC+AGG + chr5_4:23279277-23279296 None:intergenic 35.0%
TCAATAAGGCCAGAAACAAA+AGG + chr5_4:23279293-23279312 None:intergenic 35.0%
! GCTTGTGAGTTTTCAAAGAG+GGG + chr5_4:23277205-23277224 None:intergenic 40.0%
CTGGGAGAAATATTTAAGGG+GGG + chr5_4:23277271-23277290 None:intergenic 40.0%
GAGAGATCATACCCATTACT+GGG + chr5_4:23277289-23277308 None:intergenic 40.0%
!!! GGTGTTGATTTTCAAAGGGT+TGG + chr5_4:23277384-23277403 None:intergenic 40.0%
!! GAAAGAACTTTTGGGTAGGT+TGG + chr5_4:23277483-23277502 None:intergenic 40.0%
!! TAGGGAAAGAACTTTTGGGT+AGG + chr5_4:23277487-23277506 None:intergenic 40.0%
TCCCTATAAGGCTGTTCTTA+TGG - chr5_4:23277501-23277520 Msa0844710:CDS 40.0%
! GCCATAAGAACAGCCTTATA+GGG + chr5_4:23277505-23277524 None:intergenic 40.0%
! TGCCATAAGAACAGCCTTAT+AGG + chr5_4:23277506-23277525 None:intergenic 40.0%
TATAAGGCTGTTCTTATGGC+AGG - chr5_4:23277505-23277524 Msa0844710:CDS 40.0%
TGAAGCCCTTGAATCTCTTT+GGG - chr5_4:23277594-23277613 Msa0844710:CDS 40.0%
GTGAACCCAAAGAGATTCAA+GGG + chr5_4:23277602-23277621 None:intergenic 40.0%
TGTGAACCCAAAGAGATTCA+AGG + chr5_4:23277603-23277622 None:intergenic 40.0%
ATCACCTTGAAAAGAAGCAG+AGG + chr5_4:23277626-23277645 None:intergenic 40.0%
AGAAGTGAGAAGAATTGAGG+AGG + chr5_4:23277654-23277673 None:intergenic 40.0%
GAAGCATGTTACCATCAACA+AGG - chr5_4:23278139-23278158 Msa0844710:intron 40.0%
! GCAAGTTGAACTTTCCTATC+AGG + chr5_4:23278238-23278257 None:intergenic 40.0%
GTTCAACTTGCAAAAGAGCT+TGG - chr5_4:23278247-23278266 Msa0844710:CDS 40.0%
AACCAAGGCAAGTTGCTATA+TGG - chr5_4:23278275-23278294 Msa0844710:CDS 40.0%
AACCATATAGCAACTTGCCT+TGG + chr5_4:23278280-23278299 None:intergenic 40.0%
TGAGGTGAATTGATTGCTTC+TGG + chr5_4:23278908-23278927 None:intergenic 40.0%
CATATTAGGGAGTGACACTT+TGG + chr5_4:23278984-23279003 None:intergenic 40.0%
! CAAAGTGTCACTCCCTAATA+TGG - chr5_4:23278982-23279001 Msa0844710:CDS 40.0%
!! CACATCACTTTTAGCTGAGT+TGG + chr5_4:23279032-23279051 None:intergenic 40.0%
ATAGCCCACATTGCAATGAT+GGG - chr5_4:23279062-23279081 Msa0844710:five_prime_UTR 40.0%
TGTTCCCATCATTGCAATGT+GGG + chr5_4:23279069-23279088 None:intergenic 40.0%
TTGTTCCCATCATTGCAATG+TGG + chr5_4:23279070-23279089 None:intergenic 40.0%
! GCTTGTGAGTTTTCAAAGAG+GGG + chr5_4:23277205-23277224 None:intergenic 40.0%
CTGGGAGAAATATTTAAGGG+GGG + chr5_4:23277271-23277290 None:intergenic 40.0%
GAGAGATCATACCCATTACT+GGG + chr5_4:23277289-23277308 None:intergenic 40.0%
!!! GGTGTTGATTTTCAAAGGGT+TGG + chr5_4:23277384-23277403 None:intergenic 40.0%
!! GAAAGAACTTTTGGGTAGGT+TGG + chr5_4:23277483-23277502 None:intergenic 40.0%
!! TAGGGAAAGAACTTTTGGGT+AGG + chr5_4:23277487-23277506 None:intergenic 40.0%
TCCCTATAAGGCTGTTCTTA+TGG - chr5_4:23277501-23277520 Msa0844710:CDS 40.0%
! GCCATAAGAACAGCCTTATA+GGG + chr5_4:23277505-23277524 None:intergenic 40.0%
! TGCCATAAGAACAGCCTTAT+AGG + chr5_4:23277506-23277525 None:intergenic 40.0%
TATAAGGCTGTTCTTATGGC+AGG - chr5_4:23277505-23277524 Msa0844710:CDS 40.0%
TGAAGCCCTTGAATCTCTTT+GGG - chr5_4:23277594-23277613 Msa0844710:CDS 40.0%
GTGAACCCAAAGAGATTCAA+GGG + chr5_4:23277602-23277621 None:intergenic 40.0%
TGTGAACCCAAAGAGATTCA+AGG + chr5_4:23277603-23277622 None:intergenic 40.0%
ATCACCTTGAAAAGAAGCAG+AGG + chr5_4:23277626-23277645 None:intergenic 40.0%
AGAAGTGAGAAGAATTGAGG+AGG + chr5_4:23277654-23277673 None:intergenic 40.0%
GAAGCATGTTACCATCAACA+AGG - chr5_4:23278139-23278158 Msa0844710:intron 40.0%
! GCAAGTTGAACTTTCCTATC+AGG + chr5_4:23278238-23278257 None:intergenic 40.0%
GTTCAACTTGCAAAAGAGCT+TGG - chr5_4:23278247-23278266 Msa0844710:CDS 40.0%
AACCAAGGCAAGTTGCTATA+TGG - chr5_4:23278275-23278294 Msa0844710:CDS 40.0%
AACCATATAGCAACTTGCCT+TGG + chr5_4:23278280-23278299 None:intergenic 40.0%
TGAGGTGAATTGATTGCTTC+TGG + chr5_4:23278908-23278927 None:intergenic 40.0%
CATATTAGGGAGTGACACTT+TGG + chr5_4:23278984-23279003 None:intergenic 40.0%
! CAAAGTGTCACTCCCTAATA+TGG - chr5_4:23278982-23279001 Msa0844710:CDS 40.0%
!! CACATCACTTTTAGCTGAGT+TGG + chr5_4:23279032-23279051 None:intergenic 40.0%
ATAGCCCACATTGCAATGAT+GGG - chr5_4:23279062-23279081 Msa0844710:five_prime_UTR 40.0%
TGTTCCCATCATTGCAATGT+GGG + chr5_4:23279069-23279088 None:intergenic 40.0%
TTGTTCCCATCATTGCAATG+TGG + chr5_4:23279070-23279089 None:intergenic 40.0%
! AGTTTTCAAAGAGGGGCAGA+AGG + chr5_4:23277198-23277217 None:intergenic 45.0%
GGAGAGATCATACCCATTAC+TGG + chr5_4:23277290-23277309 None:intergenic 45.0%
!! TTTGGGTAGGTTGGTAAGTG+TGG + chr5_4:23277474-23277493 None:intergenic 45.0%
! CAAGGGCTTCAGAAGTACAA+GGG + chr5_4:23277585-23277604 None:intergenic 45.0%
! TCAAGGGCTTCAGAAGTACA+AGG + chr5_4:23277586-23277605 None:intergenic 45.0%
CTGAAGCCCTTGAATCTCTT+TGG - chr5_4:23277593-23277612 Msa0844710:CDS 45.0%
! CACACCTCTGCTTCTTTTCA+AGG - chr5_4:23277619-23277638 Msa0844710:CDS 45.0%
!! AAGAGCTTGGTTTGCAACCA+AGG - chr5_4:23278260-23278279 Msa0844710:CDS 45.0%
! TGAACCTTGCCCTTCTGTTT+TGG + chr5_4:23278303-23278322 None:intergenic 45.0%
TTTGATAGGTGACCCGTGTT+CGG + chr5_4:23278661-23278680 None:intergenic 45.0%
GATAGCCCACATTGCAATGA+TGG - chr5_4:23279061-23279080 Msa0844710:five_prime_UTR 45.0%
CAGTAGAGTTACATCTGCAG+TGG + chr5_4:23279326-23279345 None:intergenic 45.0%
CACTGCAGATGTAACTCTAC+TGG - chr5_4:23279324-23279343 Msa0844710:five_prime_UTR 45.0%
! AGTTTTCAAAGAGGGGCAGA+AGG + chr5_4:23277198-23277217 None:intergenic 45.0%
GGAGAGATCATACCCATTAC+TGG + chr5_4:23277290-23277309 None:intergenic 45.0%
!! TTTGGGTAGGTTGGTAAGTG+TGG + chr5_4:23277474-23277493 None:intergenic 45.0%
! CAAGGGCTTCAGAAGTACAA+GGG + chr5_4:23277585-23277604 None:intergenic 45.0%
! TCAAGGGCTTCAGAAGTACA+AGG + chr5_4:23277586-23277605 None:intergenic 45.0%
CTGAAGCCCTTGAATCTCTT+TGG - chr5_4:23277593-23277612 Msa0844710:CDS 45.0%
! CACACCTCTGCTTCTTTTCA+AGG - chr5_4:23277619-23277638 Msa0844710:CDS 45.0%
!! AAGAGCTTGGTTTGCAACCA+AGG - chr5_4:23278260-23278279 Msa0844710:CDS 45.0%
! TGAACCTTGCCCTTCTGTTT+TGG + chr5_4:23278303-23278322 None:intergenic 45.0%
TTTGATAGGTGACCCGTGTT+CGG + chr5_4:23278661-23278680 None:intergenic 45.0%
GATAGCCCACATTGCAATGA+TGG - chr5_4:23279061-23279080 Msa0844710:five_prime_UTR 45.0%
CAGTAGAGTTACATCTGCAG+TGG + chr5_4:23279326-23279345 None:intergenic 45.0%
CACTGCAGATGTAACTCTAC+TGG - chr5_4:23279324-23279343 Msa0844710:five_prime_UTR 45.0%
! TGTGGTGGGGAACTTTGATG+TGG + chr5_4:23277076-23277095 None:intergenic 50.0%
AGAGAGAAGAGGGTAGAGAG+GGG + chr5_4:23277173-23277192 None:intergenic 50.0%
CAGAGAGAAGAGGGTAGAGA+GGG + chr5_4:23277174-23277193 None:intergenic 50.0%
TCAGAGAGAAGAGGGTAGAG+AGG + chr5_4:23277175-23277194 None:intergenic 50.0%
GCAGAAGGTCAGAGAGAAGA+GGG + chr5_4:23277183-23277202 None:intergenic 50.0%
ATGTGGGAATTGTGGGAGTG+AGG + chr5_4:23277311-23277330 None:intergenic 50.0%
! GACGAAAGAAGCAGGTGTTG+AGG + chr5_4:23277343-23277362 None:intergenic 50.0%
AAGGCTGTTCTTATGGCAGG+TGG - chr5_4:23277508-23277527 Msa0844710:CDS 50.0%
! ATGGCAGGTGGCAAGCTTTT+TGG - chr5_4:23277520-23277539 Msa0844710:CDS 50.0%
GGTTCCAAAACAGAAGGGCA+AGG - chr5_4:23278296-23278315 Msa0844710:CDS 50.0%
! GTGGTGGGGAACTTTGATGT+GGG + chr5_4:23277075-23277094 None:intergenic 50.0%
! TGTGGTGGGGAACTTTGATG+TGG + chr5_4:23277076-23277095 None:intergenic 50.0%
AGAGAGAAGAGGGTAGAGAG+GGG + chr5_4:23277173-23277192 None:intergenic 50.0%
CAGAGAGAAGAGGGTAGAGA+GGG + chr5_4:23277174-23277193 None:intergenic 50.0%
TCAGAGAGAAGAGGGTAGAG+AGG + chr5_4:23277175-23277194 None:intergenic 50.0%
GCAGAAGGTCAGAGAGAAGA+GGG + chr5_4:23277183-23277202 None:intergenic 50.0%
ATGTGGGAATTGTGGGAGTG+AGG + chr5_4:23277311-23277330 None:intergenic 50.0%
! GACGAAAGAAGCAGGTGTTG+AGG + chr5_4:23277343-23277362 None:intergenic 50.0%
AAGGCTGTTCTTATGGCAGG+TGG - chr5_4:23277508-23277527 Msa0844710:CDS 50.0%
! ATGGCAGGTGGCAAGCTTTT+TGG - chr5_4:23277520-23277539 Msa0844710:CDS 50.0%
GGTTCCAAAACAGAAGGGCA+AGG - chr5_4:23278296-23278315 Msa0844710:CDS 50.0%
GGTTGGGGAGAGTTGAGAGT+TGG + chr5_4:23277151-23277170 None:intergenic 55.0%
AAGAGGGTAGAGAGGGGGTT+GGG + chr5_4:23277167-23277186 None:intergenic 55.0%
GAGAGAAGAGGGTAGAGAGG+GGG + chr5_4:23277172-23277191 None:intergenic 55.0%
GGCAGAAGGTCAGAGAGAAG+AGG + chr5_4:23277184-23277203 None:intergenic 55.0%
! GCAGGTGGCAAGCTTTTTGG+TGG - chr5_4:23277523-23277542 Msa0844710:CDS 55.0%
!! TGGTGGTGGAAGCAACAGAG+TGG - chr5_4:23278054-23278073 Msa0844710:intron 55.0%
GCATTCCGAGAGTCCGAACA+CGG - chr5_4:23278645-23278664 Msa0844710:intron 55.0%
CATTCCGAGAGTCCGAACAC+GGG - chr5_4:23278646-23278665 Msa0844710:intron 55.0%
GGTTGGGGAGAGTTGAGAGT+TGG + chr5_4:23277151-23277170 None:intergenic 55.0%
AAGAGGGTAGAGAGGGGGTT+GGG + chr5_4:23277167-23277186 None:intergenic 55.0%
GAGAGAAGAGGGTAGAGAGG+GGG + chr5_4:23277172-23277191 None:intergenic 55.0%
GGCAGAAGGTCAGAGAGAAG+AGG + chr5_4:23277184-23277203 None:intergenic 55.0%
! GCAGGTGGCAAGCTTTTTGG+TGG - chr5_4:23277523-23277542 Msa0844710:CDS 55.0%
!! TGGTGGTGGAAGCAACAGAG+TGG - chr5_4:23278054-23278073 Msa0844710:intron 55.0%
GCATTCCGAGAGTCCGAACA+CGG - chr5_4:23278645-23278664 Msa0844710:intron 55.0%
CATTCCGAGAGTCCGAACAC+GGG - chr5_4:23278646-23278665 Msa0844710:intron 55.0%
AGAGGGTAGAGAGGGGGTTG+GGG + chr5_4:23277166-23277185 None:intergenic 60.0%
GAAGAGGGTAGAGAGGGGGT+TGG + chr5_4:23277168-23277187 None:intergenic 60.0%
GTGACCCGTGTTCGGACTCT+CGG + chr5_4:23278653-23278672 None:intergenic 60.0%
AGAGGGTAGAGAGGGGGTTG+GGG + chr5_4:23277166-23277185 None:intergenic 60.0%
GAAGAGGGTAGAGAGGGGGT+TGG + chr5_4:23277168-23277187 None:intergenic 60.0%
GTGACCCGTGTTCGGACTCT+CGG + chr5_4:23278653-23278672 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23277073 23279499 23277073 ID=Msa0844710;Name=Msa0844710
chr5_4 mRNA 23277073 23279499 23277073 ID=Msa0844710-mRNA-1;Parent=Msa0844710;Name=Msa0844710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=447|1|1|1|1|1|3|187|333
chr5_4 exon 23277073 23277736 23277073 ID=Msa0844710-mRNA-1:exon:9463;Parent=Msa0844710-mRNA-1
chr5_4 exon 23278143 23278546 23278143 ID=Msa0844710-mRNA-1:exon:9462;Parent=Msa0844710-mRNA-1
chr5_4 exon 23278932 23279499 23278932 ID=Msa0844710-mRNA-1:exon:9461;Parent=Msa0844710-mRNA-1
chr5_4 five_prime_UTR 23279053 23279499 23279053 ID=Msa0844710-mRNA-1:five_prime_utr;Parent=Msa0844710-mRNA-1
chr5_4 CDS 23278932 23279052 23278932 ID=Msa0844710-mRNA-1:cds;Parent=Msa0844710-mRNA-1
chr5_4 CDS 23278143 23278546 23278143 ID=Msa0844710-mRNA-1:cds;Parent=Msa0844710-mRNA-1
chr5_4 CDS 23277260 23277736 23277260 ID=Msa0844710-mRNA-1:cds;Parent=Msa0844710-mRNA-1
chr5_4 three_prime_UTR 23277073 23277259 23277073 ID=Msa0844710-mRNA-1:three_prime_utr;Parent=Msa0844710-mRNA-1
Gene Sequence

>Msa0844710

ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTACTTCTGAAGCCCTTGAATCTCTTTGGGTTCACACCTCTGCTTCTTTTCAAGGTTCAAATTCAGTGGTTAATTTTGAGAATGGTGGTGGAAGCAACAGAGTGGTAACAGATAAACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGTTACCATCAACAAGGAAAGAAAAGGAGGCTTTCAAGTGAACAAGTTCAATTTCTTGAAAAGAGTTTTGAGGTAGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCAAAAGAGCTTGGTTTGCAACCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGTCTCAAAGATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTTAATTCTCTCAAGAACAAATTGATCCCAAGAGATAAAGAGAAAGAGAATTCAGATGAAAAATCATCACCAGAAGCAATCAATTCACCTCATAACAACAAAGATCCAATGGATATAATCTCAATTACAAATTCAGAAAATGGGTCCAAAGTGTCACTCCCTAATATGGTACTAAAATGTAAGCAAGAAGATGCCAACTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGGGAACAATCTTTCTTCTTTCATAGAGCCTACAGATTCTTCACATGCTTTTGAACCTGATCATTCAGATTTCTCACAAGATGAAGAGGATAATGATAACTTGAGTCATAATCTTTTGACTCTTCCTTGCTTACCAAAAGTTGAAGATGTTTGCTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACCTTTTGTTTCTGGCCTTATTGA
Protein sequence

>Msa0844710

MAGGKLFGGSNMSLLLQNERLPCTSEALESLWVHTSASFQGSNSVVNFENGGGSNRVVTDKPFFQQLEKEENCGDEDYEACYHQQGKKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKLKEEVNSLKNKLIPRDKEKENSDEKSSPEAINSPHNNKDPMDIISITNSENGSKVSLPNMVLKCKQEDANSAKSDVLDSDSPHCNDGNNLSSFIEPTDSSHAFEPDHSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY*