AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725070 MtrunA17_Chr5g0416461 98.319 476 8 0 4 479 1 476 0.0 972
Msa0725070 MtrunA17_Chr8g0362081 73.870 509 88 7 4 479 1 497 0.0 734
Msa0725070 MtrunA17_Chr4g0060541 63.760 367 128 2 115 479 17 380 6.46e-173 491
Msa0725070 MtrunA17_Chr4g0011151 61.190 353 136 1 127 479 97 448 2.17e-160 461
Msa0725070 MtrunA17_Chr4g0011221 60.907 353 137 1 127 479 97 448 1.46e-159 459
Msa0725070 MtrunA17_Chr4g0011171 60.623 353 138 1 127 479 97 448 3.58e-159 458
Msa0725070 MtrunA17_Chr4g0011161 60.340 353 139 1 127 479 97 448 7.18e-159 457
Msa0725070 MtrunA17_Chr4g0010131 59.563 366 141 3 114 479 53 411 3.62e-158 454
Msa0725070 MtrunA17_Chr4g0010161 59.322 354 143 1 126 479 62 414 8.99e-152 438
Msa0725070 MtrunA17_Chr2g0326541 50.282 354 163 4 131 479 19 364 2.28e-115 343
Msa0725070 MtrunA17_Chr4g0011191 64.953 214 75 0 127 340 97 310 1.04e-95 291
Msa0725070 MtrunA17_Chr7g0225551 38.596 342 193 9 145 477 68 401 2.14e-66 219
Msa0725070 MtrunA17_Chr6g0459491 37.534 365 190 9 133 477 57 403 2.79e-63 211
Msa0725070 MtrunA17_Chr4g0011201 57.895 114 48 0 366 479 10 123 1.53e-46 157
Msa0725070 MtrunA17_Chr3g0122681 28.980 245 149 7 128 355 31 267 8.45e-22 97.1
Msa0725070 MtrunA17_Chr8g0377241 26.446 242 159 5 128 355 47 283 1.72e-16 81.3
Msa0725070 MtrunA17_Chr3g0115401 23.851 348 191 11 132 411 43 384 1.11e-15 79.3
Msa0725070 MtrunA17_Chr8g0378511 26.408 284 181 9 132 404 77 343 2.16e-15 78.2
Msa0725070 MtrunA17_Chr4g0063531 25.681 257 174 7 108 353 43 293 3.71e-15 77.4
Msa0725070 MtrunA17_Chr2g0278921 23.810 357 191 12 128 411 39 387 1.21e-13 72.8
Msa0725070 MtrunA17_Chr4g0004201 24.800 250 162 5 132 355 5 254 1.42e-13 72.0
Msa0725070 MtrunA17_Chr7g0260051 22.511 231 161 4 141 354 13 242 4.54e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725070 AT2G02870.2 60.700 486 162 9 4 479 1 467 0.0 567
Msa0725070 AT2G02870.3 60.700 486 162 9 4 479 1 467 0.0 567
Msa0725070 AT2G02870.1 60.700 486 162 9 4 479 1 467 0.0 567
Msa0725070 AT1G14330.1 59.290 479 154 8 4 479 1 441 0.0 550
Msa0725070 AT1G26930.1 68.378 370 114 1 113 479 52 421 0.0 531
Msa0725070 AT1G74510.2 65.169 356 115 2 133 479 96 451 3.97e-169 484
Msa0725070 AT1G74510.1 65.169 356 115 2 133 479 96 451 3.97e-169 484
Msa0725070 AT1G74510.3 65.169 356 115 2 133 479 96 451 3.97e-169 484
Msa0725070 AT1G26930.2 57.838 370 101 2 113 479 52 369 5.57e-149 430
Msa0725070 AT5G60570.2 45.430 372 188 6 114 479 31 393 5.98e-107 323
Msa0725070 AT5G60570.1 45.430 372 188 6 114 479 31 393 5.98e-107 323
Msa0725070 AT5G60570.3 45.430 372 188 6 114 479 31 393 5.98e-107 323
Msa0725070 AT3G27150.2 37.673 361 198 10 133 477 71 420 1.12e-66 220
Msa0725070 AT3G27150.1 37.673 361 198 10 133 477 71 420 1.12e-66 220
Msa0725070 AT5G40680.1 35.119 336 206 4 110 440 43 371 5.00e-61 205
Msa0725070 AT1G16250.2 26.061 330 208 10 131 436 7 324 2.88e-24 104
Msa0725070 AT1G16250.1 26.061 330 208 10 131 436 7 324 2.88e-24 104
Msa0725070 AT1G67480.3 29.614 233 145 5 132 350 39 266 2.47e-21 95.9
Msa0725070 AT1G67480.1 29.614 233 145 5 132 350 39 266 2.47e-21 95.9
Msa0725070 AT1G67480.2 29.614 233 145 5 132 350 39 266 2.47e-21 95.9
Msa0725070 AT1G15670.1 25.648 347 209 14 132 448 3 330 9.20e-17 82.0
Msa0725070 AT1G55270.1 26.496 234 157 5 132 355 78 306 1.75e-16 82.0
Msa0725070 AT3G61350.2 23.054 334 215 12 118 435 6 313 2.30e-14 74.7
Msa0725070 AT3G61350.1 23.054 334 215 12 118 435 6 313 2.30e-14 74.7
Msa0725070 AT1G22040.1 25.862 348 183 11 132 411 43 383 7.31e-14 73.9
Msa0725070 AT1G80440.1 24.540 326 208 11 132 435 3 312 7.31e-14 73.2
Msa0725070 AT1G27420.1 24.206 252 150 7 127 353 5 240 4.85e-12 67.8
Msa0725070 AT3G63220.3 23.113 212 145 4 132 326 11 221 2.82e-11 65.5
Msa0725070 AT3G63220.2 23.113 212 145 4 132 326 11 221 2.82e-11 65.5
Msa0725070 AT3G63220.1 23.113 212 145 4 132 326 4 214 2.83e-11 65.5

Find 144 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCTCTTGGTTGAAAAT+TGG 0.121147 5_1:+24556188 Msa0725070:three_prime_UTR
TGAAGTTCCAATACAAATTT+AGG 0.140902 5_1:+24556061 Msa0725070:three_prime_UTR
AAAATTCTTGTCAACGAAAC+TGG 0.216651 5_1:-24555996 None:intergenic
GACACTGGATTCTTGCTAAT+TGG 0.221721 5_1:+24555807 Msa0725070:three_prime_UTR
GCAAATAATAAAAGAATAAA+TGG 0.222869 5_1:-24556223 None:intergenic
GCTGGAGATTCGTCGGATTC+TGG 0.248232 5_1:+24554655 Msa0725070:CDS
TGCATCCACCTTTGGCGAAT+TGG 0.251940 5_1:-24554886 None:intergenic
CAATTCTCCATTGGAATTCA+TGG 0.255465 5_1:+24556151 Msa0725070:three_prime_UTR
ATGGTTGGGGTCTTGCATTT+AGG 0.276947 5_1:+24555541 Msa0725070:CDS
TGGTTGGGGTCTTGCATTTA+GGG 0.285142 5_1:+24555542 Msa0725070:CDS
GGAAATATGCTCATTGTTAT+TGG 0.306561 5_1:+24555570 Msa0725070:CDS
CATGAAGTACATGCTGGATT+TGG 0.313702 5_1:+24554372 Msa0725070:CDS
TTCATCGACATCGCTCGTTC+TGG 0.316008 5_1:-24555519 None:intergenic
TAAGATATTAATCAAGATTA+GGG 0.319728 5_1:+24555888 Msa0725070:three_prime_UTR
GGAACCGAACTTCTTGTGTT+TGG 0.324378 5_1:+24554970 Msa0725070:CDS
GTTTCATTGAACTCAATTCT+TGG 0.330175 5_1:+24555616 Msa0725070:CDS
AGGAATTTCTGTCCATGTTC+TGG 0.338733 5_1:-24555328 None:intergenic
TTAAGATATTAATCAAGATT+AGG 0.350120 5_1:+24555887 Msa0725070:three_prime_UTR
ATCTATAAACCTCGCCGCTT+CGG 0.350189 5_1:-24554789 None:intergenic
ATGCTGACATGGAAGTTAAA+AGG 0.357590 5_1:+24555454 Msa0725070:CDS
GAACCGAACTTCTTGTGTTT+GGG 0.358419 5_1:+24554971 Msa0725070:CDS
GCATCCACCTTTGGCGAATT+GGG 0.360483 5_1:-24554885 None:intergenic
TATCATGTAGCAAAGGAAAT+AGG 0.365271 5_1:+24556029 Msa0725070:three_prime_UTR
CGCTGTTCAAGGTCTGATTA+TGG 0.366547 5_1:+24554727 Msa0725070:CDS
TGTGTCTCAGTCGCTGTTCA+AGG 0.376165 5_1:+24554716 Msa0725070:CDS
ATATCAATGAAAGAACAAAA+AGG 0.386358 5_1:-24555838 None:intergenic
TCTCGTGTGCCCTCCTTGAA+TGG 0.387707 5_1:+24554851 Msa0725070:CDS
ACAGTAACCTAAATTTGTAT+TGG 0.389660 5_1:-24556068 None:intergenic
TTTCATTGAACTCAATTCTT+GGG 0.403492 5_1:+24555617 Msa0725070:CDS
GTTTGTTTAAGTTCTCTTGA+AGG 0.411659 5_1:+24556096 Msa0725070:three_prime_UTR
TTGACAAATTCATGGTCCTC+TGG 0.419803 5_1:+24555033 Msa0725070:CDS
TTGTAACTTGACCTCTCTCT+TGG 0.422676 5_1:+24556177 Msa0725070:three_prime_UTR
TCGGCAAATGCATCCACCTT+TGG 0.425014 5_1:-24554894 None:intergenic
CGTTTATAATTGTGCTGTGA+TGG 0.426012 5_1:+24555698 Msa0725070:CDS
ACAAACATTCAAGGGCTCAT+TGG 0.427663 5_1:-24554557 None:intergenic
CTCGTGTGCCCTCCTTGAAT+GGG 0.432187 5_1:+24554852 Msa0725070:CDS
TTCCTCGGTTTATTCATGCT+CGG 0.436739 5_1:-24555201 None:intergenic
GGCGGTGCCTCGGTTGCAGC+AGG 0.445232 5_1:-24555390 None:intergenic
AAACCGAGGAAGATGTGTTC+TGG 0.445291 5_1:+24555213 Msa0725070:CDS
ATTAGCAGGTGGTTGTGATT+CGG 0.446104 5_1:+24555116 Msa0725070:CDS
TCCTCGGTTTATTCATGCTC+GGG 0.446460 5_1:-24555200 None:intergenic
GGATTCTGTTCTTTCTCAAA+CGG 0.450478 5_1:+24554525 Msa0725070:CDS
AGCGATGTCGATGAATGGTT+GGG 0.451823 5_1:+24555527 Msa0725070:CDS
AAACGGTATCATGGAACATT+GGG 0.454394 5_1:+24554822 Msa0725070:CDS
ACAATTATAAACGAAGTTAC+CGG 0.457419 5_1:-24555688 None:intergenic
GGTCGTACGCTTCCCATTCA+AGG 0.463650 5_1:-24554864 None:intergenic
GATGTGTTCTGGTGTATTCA+TGG 0.466838 5_1:+24555224 Msa0725070:CDS
AGAACCCCTACTACTTCGTC+CGG 0.468311 5_1:-24555361 None:intergenic
TGAGAAAGAACAGAATCCTT+AGG 0.471913 5_1:-24554520 None:intergenic
AACTCCTTGACAAACATTCA+AGG 0.473412 5_1:-24554566 None:intergenic
TTCACCGAGTTGCACAACTT+TGG 0.473567 5_1:+24555771 Msa0725070:three_prime_UTR
AATGCTCCAAGATGTTTGTT+CGG 0.474359 5_1:+24555066 Msa0725070:CDS
CGCCGCTTCGGATTATTTCA+CGG 0.477509 5_1:-24554777 None:intergenic
GAGCGATGTCGATGAATGGT+TGG 0.478296 5_1:+24555526 Msa0725070:CDS
ATCTTGTCACATAGTTGAAA+CGG 0.478670 5_1:+24554477 Msa0725070:CDS
TATTTCGTTGCAACATCCTA+AGG 0.480105 5_1:+24554504 Msa0725070:CDS
GTATTGATTCAATTCTCCAT+TGG 0.484854 5_1:+24556142 Msa0725070:three_prime_UTR
AAATTCTTGTCAACGAAACT+GGG 0.487691 5_1:-24555995 None:intergenic
GTCGTTGCTGTGTTGTTTCG+AGG 0.487767 5_1:+24554308 Msa0725070:CDS
TGAGATGCCTGCTGCAACCG+AGG 0.492241 5_1:+24555383 Msa0725070:CDS
GAAGCGGCGAGGTTTATAGA+TGG 0.493954 5_1:+24554791 Msa0725070:CDS
GGTGAGATTGCGATATTAGC+AGG 0.494746 5_1:+24555102 Msa0725070:CDS
AAACCTTCACCATGAGTCCT+AGG 0.500082 5_1:-24555597 None:intergenic
GATAAAGAATCTTTAGCTGT+AGG 0.501866 5_1:+24554949 Msa0725070:CDS
GTCTTACATGAAGTACATGC+TGG 0.509303 5_1:+24554366 Msa0725070:CDS
GGCAATGAGAGGCGGTGCCT+CGG 0.509621 5_1:-24555400 None:intergenic
AACATCTTAGTACACTTCCT+AGG 0.510935 5_1:-24554451 None:intergenic
AATATGCTCATTGTTATTGG+TGG 0.514731 5_1:+24555573 Msa0725070:CDS
CCGAACTTCTTGTGTTTGGG+AGG 0.516315 5_1:+24554974 Msa0725070:CDS
TCTGATGAGGAGCAGCATGC+TGG 0.518838 5_1:+24554637 Msa0725070:CDS
CCTCCCAAACACAAGAAGTT+CGG 0.521950 5_1:-24554974 None:intergenic
GTGGATGCATTTGCCGAGGA+TGG 0.521975 5_1:+24554900 Msa0725070:CDS
GCAGAGCCGAACAAACATCT+TGG 0.522841 5_1:-24555072 None:intergenic
GGTTCATCGTCCATCGACAC+TGG 0.524081 5_1:+24555792 Msa0725070:three_prime_UTR
CTGAGGATGAACATCATCCT+AGG 0.526740 5_1:+24554434 Msa0725070:CDS
TATAGATGGAGGAGACTAAA+CGG 0.529185 5_1:+24554805 Msa0725070:CDS
GTTTATAATTGTGCTGTGAT+GGG 0.533513 5_1:+24555699 Msa0725070:CDS
TAAACGGTATCATGGAACAT+TGG 0.533894 5_1:+24554821 Msa0725070:CDS
GAGGAGACTAAACGGTATCA+TGG 0.537620 5_1:+24554813 Msa0725070:CDS
GAACGAGCGATGTCGATGAA+TGG 0.544102 5_1:+24555522 Msa0725070:CDS
CGAACTTCTTGTGTTTGGGA+GGG 0.544855 5_1:+24554975 Msa0725070:CDS
TAGGAAGTGTACTAAGATGT+TGG 0.544939 5_1:+24554453 Msa0725070:CDS
GAACCCCTACTACTTCGTCC+GGG 0.545858 5_1:-24555360 None:intergenic
ACACCAGAACACATCTTCCT+CGG 0.549483 5_1:-24555216 None:intergenic
GACACACGATTGAGCTGTCT+CGG 0.549997 5_1:-24554699 None:intergenic
TTGTTCGGCTCTGCAAGCCT+TGG 0.557116 5_1:+24555081 Msa0725070:CDS
CATTGCGGAGGTCCTTCACT+AGG 0.564491 5_1:-24555642 None:intergenic
CTACTAGCTCGAAAACGATC+CGG 0.564520 5_1:+24555669 Msa0725070:CDS
GAAATTCCTGACATGTCCCC+CGG 0.564869 5_1:+24555342 Msa0725070:CDS
CTTGTGAAACAGAGAACGAT+TGG 0.567058 5_1:+24554344 Msa0725070:CDS
GAGCTGTCTCGGTTCATCCT+CGG 0.567515 5_1:-24554688 None:intergenic
AGCAGGTGGTTGTGATTCGG+AGG 0.569771 5_1:+24555119 Msa0725070:CDS
TAGCAAGAATCCAGTGTCGA+TGG 0.573542 5_1:-24555802 None:intergenic
CAATCGTTTGAAGCCATCCT+CGG 0.574471 5_1:-24554913 None:intergenic
ACAAAATCCATGAATTCCAA+TGG 0.578231 5_1:-24556158 None:intergenic
TGTTCTGGTGTATTCATGGA+TGG 0.587848 5_1:+24555228 Msa0725070:CDS
AGAAAACTGTGGATTACTGT+TGG 0.588100 5_1:+24555489 Msa0725070:CDS
TGAAATAATCCGAAGCGGCG+AGG 0.588835 5_1:+24554780 Msa0725070:CDS
ACGACCCAATTCGCCAAAGG+TGG 0.595170 5_1:+24554881 Msa0725070:CDS
AATTCTTGGGTGCCTAGTGA+AGG 0.596232 5_1:+24555630 Msa0725070:CDS
GCAGCATGCTGGAGATTCGT+CGG 0.597982 5_1:+24554648 Msa0725070:CDS
TGCTGCTGATTATGCTGACA+TGG 0.602364 5_1:+24555443 Msa0725070:CDS
GCGATGTCGATGAATGGTTG+GGG 0.603196 5_1:+24555528 Msa0725070:CDS
AGCATTCATTCTCATTCCAG+AGG 0.606098 5_1:-24555049 None:intergenic
TGTTATTCAGCAATCTGATG+AGG 0.609072 5_1:+24554624 Msa0725070:CDS
GTTTGTCAAGGAGTTCATGA+TGG 0.609659 5_1:+24554574 Msa0725070:CDS
ACTCCTTGACAAACATTCAA+GGG 0.609745 5_1:-24554565 None:intergenic
AGCTTGGTATCATGTAGCAA+AGG 0.612548 5_1:+24556022 Msa0725070:three_prime_UTR
TCAGCAGAATCAATATTCAT+CGG 0.615157 5_1:-24554415 None:intergenic
GAGCCCTTGAATGTTTGTCA+AGG 0.615186 5_1:+24554562 Msa0725070:CDS
GGTCTTGCATTTAGGGCATG+CGG 0.616506 5_1:+24555549 Msa0725070:CDS
ATTGGTGGACCTAGGACTCA+TGG 0.617047 5_1:+24555588 Msa0725070:CDS
AACCCCTACTACTTCGTCCG+GGG 0.618769 5_1:-24555359 None:intergenic
ATAATTTACAAACCAGAACA+TGG 0.619596 5_1:+24555316 Msa0725070:CDS
TGAACCAAAGTTGTGCAACT+CGG 0.625614 5_1:-24555775 None:intergenic
CTCAGAATTGTATAGTTCAG+CGG 0.626222 5_1:-24555157 None:intergenic
CTAGTGAAGGACCTCCGCAA+TGG 0.629280 5_1:+24555643 Msa0725070:CDS
ACCCCTACTACTTCGTCCGG+GGG 0.630121 5_1:-24555358 None:intergenic
GATATTAATCAAGATTAGGG+AGG 0.631664 5_1:+24555891 Msa0725070:three_prime_UTR
CGAGCTAGTAGACGCCATTG+CGG 0.631973 5_1:-24555657 None:intergenic
TTATCTACAACGGCAATGAG+AGG 0.633005 5_1:-24555411 None:intergenic
GCAGGTGGTTGTGATTCGGA+GGG 0.633783 5_1:+24555120 Msa0725070:CDS
TCATTGTTATTGGTGGACCT+AGG 0.638584 5_1:+24555580 Msa0725070:CDS
GGACCTAGGACTCATGGTGA+AGG 0.644982 5_1:+24555594 Msa0725070:CDS
TTCCGTGAAATAATCCGAAG+CGG 0.645763 5_1:+24554775 Msa0725070:CDS
GCGGCGAGGTTTATAGATGG+AGG 0.647194 5_1:+24554794 Msa0725070:CDS
CGTACGACCCAATTCGCCAA+AGG 0.656928 5_1:+24554878 Msa0725070:CDS
AAAGGTGGATGCATTTGCCG+AGG 0.658304 5_1:+24554896 Msa0725070:CDS
GCTAGTAGACGCCATTGCGG+AGG 0.660404 5_1:-24555654 None:intergenic
ATACAATTCATTATCTACAA+CGG 0.661324 5_1:-24555421 None:intergenic
TGTCAAGGAGTTCATGATGG+TGG 0.663431 5_1:+24554577 Msa0725070:CDS
TATGTTGTAGGTGGAATCGG+CGG 0.671001 5_1:+24555258 Msa0725070:CDS
CGTACGCTTCCCATTCAAGG+AGG 0.678294 5_1:-24554861 None:intergenic
GTACGCTTCCCATTCAAGGA+GGG 0.679998 5_1:-24554860 None:intergenic
TCTACAACGGCAATGAGAGG+CGG 0.681780 5_1:-24555408 None:intergenic
GGAAGTTAAAAGGTATGACA+AGG 0.683430 5_1:+24555464 Msa0725070:CDS
GATGAATATTGATTCTGCTG+AGG 0.684071 5_1:+24554417 Msa0725070:CDS
CTAATATCGCAATCTCACCA+AGG 0.689793 5_1:-24555098 None:intergenic
AATTCTTGTCAACGAAACTG+GGG 0.690493 5_1:-24555994 None:intergenic
TGGGTTGCTGAAGCATTGAA+CGG 0.698713 5_1:+24555718 Msa0725070:exon
ATGACAAGGAAAGAAAACTG+TGG 0.706266 5_1:+24555478 Msa0725070:CDS
TCCCGAGCATGAATAAACCG+AGG 0.713762 5_1:+24555199 Msa0725070:CDS
GATTCAAAGCTTCTTACATG+CGG 0.719497 5_1:+24555285 Msa0725070:CDS
GAGATTGCGATATTAGCAGG+TGG 0.734472 5_1:+24555105 Msa0725070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGATATTAATCAAGATT+AGG + chr5_1:24555887-24555906 Msa0725070:three_prime_UTR 15.0%
!! TAAGATATTAATCAAGATTA+GGG + chr5_1:24555888-24555907 Msa0725070:three_prime_UTR 15.0%
!! GCAAATAATAAAAGAATAAA+TGG - chr5_1:24556226-24556245 None:intergenic 15.0%
!! TTAAGATATTAATCAAGATT+AGG + chr5_1:24555887-24555906 Msa0725070:three_prime_UTR 15.0%
!! TAAGATATTAATCAAGATTA+GGG + chr5_1:24555888-24555907 Msa0725070:three_prime_UTR 15.0%
!! GCAAATAATAAAAGAATAAA+TGG - chr5_1:24556226-24556245 None:intergenic 15.0%
!!! GAAAAAAAAAGTGATTTTTG+TGG + chr5_1:24554066-24554085 Msa0725070:intron 20.0%
!!! TTATAGTTTGTTGAATTGAA+TGG + chr5_1:24554091-24554110 Msa0725070:intron 20.0%
!! ATACAATTCATTATCTACAA+CGG - chr5_1:24555424-24555443 None:intergenic 20.0%
!! TATCAATGAAAGAACAAAAA+GGG - chr5_1:24555840-24555859 None:intergenic 20.0%
!! ATATCAATGAAAGAACAAAA+AGG - chr5_1:24555841-24555860 None:intergenic 20.0%
!! TCAATGGAACAAAAAAAAAA+AGG - chr5_1:24555958-24555977 None:intergenic 20.0%
!!! TGATGATACAAATTTTTCAA+TGG - chr5_1:24555974-24555993 None:intergenic 20.0%
!!! GAAAAAAAAAGTGATTTTTG+TGG + chr5_1:24554066-24554085 Msa0725070:intron 20.0%
!!! TTATAGTTTGTTGAATTGAA+TGG + chr5_1:24554091-24554110 Msa0725070:intron 20.0%
!! ATACAATTCATTATCTACAA+CGG - chr5_1:24555424-24555443 None:intergenic 20.0%
!! TATCAATGAAAGAACAAAAA+GGG - chr5_1:24555840-24555859 None:intergenic 20.0%
!! ATATCAATGAAAGAACAAAA+AGG - chr5_1:24555841-24555860 None:intergenic 20.0%
!! TCAATGGAACAAAAAAAAAA+AGG - chr5_1:24555958-24555977 None:intergenic 20.0%
!!! TGATGATACAAATTTTTCAA+TGG - chr5_1:24555974-24555993 None:intergenic 20.0%
!! GATGGAAAATTTTATGTTGT+AGG + chr5_1:24555246-24555265 Msa0725070:CDS 25.0%
! ATAATTTACAAACCAGAACA+TGG + chr5_1:24555316-24555335 Msa0725070:CDS 25.0%
! TTTCATTGAACTCAATTCTT+GGG + chr5_1:24555617-24555636 Msa0725070:CDS 25.0%
! ACAATTATAAACGAAGTTAC+CGG - chr5_1:24555691-24555710 None:intergenic 25.0%
! ATCAATGAAAGAACAAAAAG+GGG - chr5_1:24555839-24555858 None:intergenic 25.0%
!! ATATTTTCGTTTCAAATGCA+GGG + chr5_1:24555857-24555876 Msa0725070:three_prime_UTR 25.0%
! TGAAGTTCCAATACAAATTT+AGG + chr5_1:24556061-24556080 Msa0725070:three_prime_UTR 25.0%
! ACAGTAACCTAAATTTGTAT+TGG - chr5_1:24556071-24556090 None:intergenic 25.0%
!! GAAGGAATGAAATAATTTTC+TGG + chr5_1:24556114-24556133 Msa0725070:three_prime_UTR 25.0%
!! GATGGAAAATTTTATGTTGT+AGG + chr5_1:24555246-24555265 Msa0725070:CDS 25.0%
! ATAATTTACAAACCAGAACA+TGG + chr5_1:24555316-24555335 Msa0725070:CDS 25.0%
! TTTCATTGAACTCAATTCTT+GGG + chr5_1:24555617-24555636 Msa0725070:CDS 25.0%
! ACAATTATAAACGAAGTTAC+CGG - chr5_1:24555691-24555710 None:intergenic 25.0%
! ATCAATGAAAGAACAAAAAG+GGG - chr5_1:24555839-24555858 None:intergenic 25.0%
!! ATATTTTCGTTTCAAATGCA+GGG + chr5_1:24555857-24555876 Msa0725070:three_prime_UTR 25.0%
! TGAAGTTCCAATACAAATTT+AGG + chr5_1:24556061-24556080 Msa0725070:three_prime_UTR 25.0%
! ACAGTAACCTAAATTTGTAT+TGG - chr5_1:24556071-24556090 None:intergenic 25.0%
!! GAAGGAATGAAATAATTTTC+TGG + chr5_1:24556114-24556133 Msa0725070:three_prime_UTR 25.0%
!!! CTTCTGTTGTTTTTCTTCAT+TGG + chr5_1:24553971-24553990 Msa0725070:intron 30.0%
TCTCATGATATGAACAAAGA+TGG - chr5_1:24554048-24554067 None:intergenic 30.0%
TCAGCAGAATCAATATTCAT+CGG - chr5_1:24554418-24554437 None:intergenic 30.0%
ATCTTGTCACATAGTTGAAA+CGG + chr5_1:24554477-24554496 Msa0725070:CDS 30.0%
GATAAAGAATCTTTAGCTGT+AGG + chr5_1:24554949-24554968 Msa0725070:CDS 30.0%
! ACAGTCTTTTGACAAATTCA+TGG + chr5_1:24555025-24555044 Msa0725070:CDS 30.0%
! GGAAAATTTTATGTTGTAGG+TGG + chr5_1:24555249-24555268 Msa0725070:CDS 30.0%
! TTTTATGTTGTAGGTGGAAT+CGG + chr5_1:24555255-24555274 Msa0725070:CDS 30.0%
GGAAATATGCTCATTGTTAT+TGG + chr5_1:24555570-24555589 Msa0725070:CDS 30.0%
! AATATGCTCATTGTTATTGG+TGG + chr5_1:24555573-24555592 Msa0725070:CDS 30.0%
GTTTCATTGAACTCAATTCT+TGG + chr5_1:24555616-24555635 Msa0725070:CDS 30.0%
GTTTATAATTGTGCTGTGAT+GGG + chr5_1:24555699-24555718 Msa0725070:CDS 30.0%
TCAATGAAAGAACAAAAAGG+GGG - chr5_1:24555838-24555857 None:intergenic 30.0%
! GATATTTTCGTTTCAAATGC+AGG + chr5_1:24555856-24555875 Msa0725070:three_prime_UTR 30.0%
! TATTTTCGTTTCAAATGCAG+GGG + chr5_1:24555858-24555877 Msa0725070:three_prime_UTR 30.0%
GATATTAATCAAGATTAGGG+AGG + chr5_1:24555891-24555910 Msa0725070:three_prime_UTR 30.0%
AAATTCTTGTCAACGAAACT+GGG - chr5_1:24555998-24556017 None:intergenic 30.0%
AAAATTCTTGTCAACGAAAC+TGG - chr5_1:24555999-24556018 None:intergenic 30.0%
! TGACAAGAATTTTCAAAGCT+TGG + chr5_1:24556006-24556025 Msa0725070:three_prime_UTR 30.0%
TATCATGTAGCAAAGGAAAT+AGG + chr5_1:24556029-24556048 Msa0725070:three_prime_UTR 30.0%
! GTTTGTTTAAGTTCTCTTGA+AGG + chr5_1:24556096-24556115 Msa0725070:three_prime_UTR 30.0%
!! GTATTGATTCAATTCTCCAT+TGG + chr5_1:24556142-24556161 Msa0725070:three_prime_UTR 30.0%
ACAAAATCCATGAATTCCAA+TGG - chr5_1:24556161-24556180 None:intergenic 30.0%
!!! CTTCTGTTGTTTTTCTTCAT+TGG + chr5_1:24553971-24553990 Msa0725070:intron 30.0%
TCTCATGATATGAACAAAGA+TGG - chr5_1:24554048-24554067 None:intergenic 30.0%
TCAGCAGAATCAATATTCAT+CGG - chr5_1:24554418-24554437 None:intergenic 30.0%
ATCTTGTCACATAGTTGAAA+CGG + chr5_1:24554477-24554496 Msa0725070:CDS 30.0%
GATAAAGAATCTTTAGCTGT+AGG + chr5_1:24554949-24554968 Msa0725070:CDS 30.0%
! ACAGTCTTTTGACAAATTCA+TGG + chr5_1:24555025-24555044 Msa0725070:CDS 30.0%
! GGAAAATTTTATGTTGTAGG+TGG + chr5_1:24555249-24555268 Msa0725070:CDS 30.0%
! TTTTATGTTGTAGGTGGAAT+CGG + chr5_1:24555255-24555274 Msa0725070:CDS 30.0%
GGAAATATGCTCATTGTTAT+TGG + chr5_1:24555570-24555589 Msa0725070:CDS 30.0%
! AATATGCTCATTGTTATTGG+TGG + chr5_1:24555573-24555592 Msa0725070:CDS 30.0%
GTTTCATTGAACTCAATTCT+TGG + chr5_1:24555616-24555635 Msa0725070:CDS 30.0%
GTTTATAATTGTGCTGTGAT+GGG + chr5_1:24555699-24555718 Msa0725070:CDS 30.0%
TCAATGAAAGAACAAAAAGG+GGG - chr5_1:24555838-24555857 None:intergenic 30.0%
! GATATTTTCGTTTCAAATGC+AGG + chr5_1:24555856-24555875 Msa0725070:three_prime_UTR 30.0%
! TATTTTCGTTTCAAATGCAG+GGG + chr5_1:24555858-24555877 Msa0725070:three_prime_UTR 30.0%
GATATTAATCAAGATTAGGG+AGG + chr5_1:24555891-24555910 Msa0725070:three_prime_UTR 30.0%
AAATTCTTGTCAACGAAACT+GGG - chr5_1:24555998-24556017 None:intergenic 30.0%
AAAATTCTTGTCAACGAAAC+TGG - chr5_1:24555999-24556018 None:intergenic 30.0%
! TGACAAGAATTTTCAAAGCT+TGG + chr5_1:24556006-24556025 Msa0725070:three_prime_UTR 30.0%
TATCATGTAGCAAAGGAAAT+AGG + chr5_1:24556029-24556048 Msa0725070:three_prime_UTR 30.0%
! GTTTGTTTAAGTTCTCTTGA+AGG + chr5_1:24556096-24556115 Msa0725070:three_prime_UTR 30.0%
!! GTATTGATTCAATTCTCCAT+TGG + chr5_1:24556142-24556161 Msa0725070:three_prime_UTR 30.0%
ACAAAATCCATGAATTCCAA+TGG - chr5_1:24556161-24556180 None:intergenic 30.0%
TTGTTGCTGCATTGAATTGA+TGG + chr5_1:24553903-24553922 Msa0725070:intron 35.0%
!! GTTGTTTAACTTTTCTGCGA+AGG + chr5_1:24554201-24554220 Msa0725070:intron 35.0%
! TTGATTTTGCAGAGACATGT+TGG + chr5_1:24554282-24554301 Msa0725070:intron 35.0%
CTGGATTTGGACATCAAAAA+TGG + chr5_1:24554385-24554404 Msa0725070:CDS 35.0%
!! GATGAATATTGATTCTGCTG+AGG + chr5_1:24554417-24554436 Msa0725070:CDS 35.0%
AACATCTTAGTACACTTCCT+AGG - chr5_1:24554454-24554473 None:intergenic 35.0%
! TAGGAAGTGTACTAAGATGT+TGG + chr5_1:24554453-24554472 Msa0725070:CDS 35.0%
TATTTCGTTGCAACATCCTA+AGG + chr5_1:24554504-24554523 Msa0725070:CDS 35.0%
TGAGAAAGAACAGAATCCTT+AGG - chr5_1:24554523-24554542 None:intergenic 35.0%
GGATTCTGTTCTTTCTCAAA+CGG + chr5_1:24554525-24554544 Msa0725070:CDS 35.0%
ACTCCTTGACAAACATTCAA+GGG - chr5_1:24554568-24554587 None:intergenic 35.0%
AACTCCTTGACAAACATTCA+AGG - chr5_1:24554569-24554588 None:intergenic 35.0%
TGTTATTCAGCAATCTGATG+AGG + chr5_1:24554624-24554643 Msa0725070:CDS 35.0%
TATAGATGGAGGAGACTAAA+CGG + chr5_1:24554805-24554824 Msa0725070:CDS 35.0%
TAAACGGTATCATGGAACAT+TGG + chr5_1:24554821-24554840 Msa0725070:CDS 35.0%
AAACGGTATCATGGAACATT+GGG + chr5_1:24554822-24554841 Msa0725070:CDS 35.0%
AATGCTCCAAGATGTTTGTT+CGG + chr5_1:24555066-24555085 Msa0725070:CDS 35.0%
CTCAGAATTGTATAGTTCAG+CGG - chr5_1:24555160-24555179 None:intergenic 35.0%
GATTCAAAGCTTCTTACATG+CGG + chr5_1:24555285-24555304 Msa0725070:CDS 35.0%
ATGCTGACATGGAAGTTAAA+AGG + chr5_1:24555454-24555473 Msa0725070:CDS 35.0%
! GGAAGTTAAAAGGTATGACA+AGG + chr5_1:24555464-24555483 Msa0725070:CDS 35.0%
ATGACAAGGAAAGAAAACTG+TGG + chr5_1:24555478-24555497 Msa0725070:CDS 35.0%
! AGAAAACTGTGGATTACTGT+TGG + chr5_1:24555489-24555508 Msa0725070:CDS 35.0%
CGTTTATAATTGTGCTGTGA+TGG + chr5_1:24555698-24555717 Msa0725070:CDS 35.0%
! ATTTTCGTTTCAAATGCAGG+GGG + chr5_1:24555859-24555878 Msa0725070:three_prime_UTR 35.0%
AATTCTTGTCAACGAAACTG+GGG - chr5_1:24555997-24556016 None:intergenic 35.0%
CAATTCTCCATTGGAATTCA+TGG + chr5_1:24556151-24556170 Msa0725070:three_prime_UTR 35.0%
TTGTTGCTGCATTGAATTGA+TGG + chr5_1:24553903-24553922 Msa0725070:intron 35.0%
!! GTTGTTTAACTTTTCTGCGA+AGG + chr5_1:24554201-24554220 Msa0725070:intron 35.0%
! TTGATTTTGCAGAGACATGT+TGG + chr5_1:24554282-24554301 Msa0725070:intron 35.0%
CTGGATTTGGACATCAAAAA+TGG + chr5_1:24554385-24554404 Msa0725070:CDS 35.0%
!! GATGAATATTGATTCTGCTG+AGG + chr5_1:24554417-24554436 Msa0725070:CDS 35.0%
AACATCTTAGTACACTTCCT+AGG - chr5_1:24554454-24554473 None:intergenic 35.0%
! TAGGAAGTGTACTAAGATGT+TGG + chr5_1:24554453-24554472 Msa0725070:CDS 35.0%
TATTTCGTTGCAACATCCTA+AGG + chr5_1:24554504-24554523 Msa0725070:CDS 35.0%
TGAGAAAGAACAGAATCCTT+AGG - chr5_1:24554523-24554542 None:intergenic 35.0%
GGATTCTGTTCTTTCTCAAA+CGG + chr5_1:24554525-24554544 Msa0725070:CDS 35.0%
ACTCCTTGACAAACATTCAA+GGG - chr5_1:24554568-24554587 None:intergenic 35.0%
AACTCCTTGACAAACATTCA+AGG - chr5_1:24554569-24554588 None:intergenic 35.0%
TGTTATTCAGCAATCTGATG+AGG + chr5_1:24554624-24554643 Msa0725070:CDS 35.0%
TATAGATGGAGGAGACTAAA+CGG + chr5_1:24554805-24554824 Msa0725070:CDS 35.0%
TAAACGGTATCATGGAACAT+TGG + chr5_1:24554821-24554840 Msa0725070:CDS 35.0%
AAACGGTATCATGGAACATT+GGG + chr5_1:24554822-24554841 Msa0725070:CDS 35.0%
AATGCTCCAAGATGTTTGTT+CGG + chr5_1:24555066-24555085 Msa0725070:CDS 35.0%
CTCAGAATTGTATAGTTCAG+CGG - chr5_1:24555160-24555179 None:intergenic 35.0%
GATTCAAAGCTTCTTACATG+CGG + chr5_1:24555285-24555304 Msa0725070:CDS 35.0%
ATGCTGACATGGAAGTTAAA+AGG + chr5_1:24555454-24555473 Msa0725070:CDS 35.0%
! GGAAGTTAAAAGGTATGACA+AGG + chr5_1:24555464-24555483 Msa0725070:CDS 35.0%
ATGACAAGGAAAGAAAACTG+TGG + chr5_1:24555478-24555497 Msa0725070:CDS 35.0%
! AGAAAACTGTGGATTACTGT+TGG + chr5_1:24555489-24555508 Msa0725070:CDS 35.0%
CGTTTATAATTGTGCTGTGA+TGG + chr5_1:24555698-24555717 Msa0725070:CDS 35.0%
! ATTTTCGTTTCAAATGCAGG+GGG + chr5_1:24555859-24555878 Msa0725070:three_prime_UTR 35.0%
AATTCTTGTCAACGAAACTG+GGG - chr5_1:24555997-24556016 None:intergenic 35.0%
CAATTCTCCATTGGAATTCA+TGG + chr5_1:24556151-24556170 Msa0725070:three_prime_UTR 35.0%
! ATTTTGCAGAGACATGTTGG+AGG + chr5_1:24554285-24554304 Msa0725070:intron 40.0%
! TTTTGCAGAGACATGTTGGA+GGG + chr5_1:24554286-24554305 Msa0725070:intron 40.0%
CTTGTGAAACAGAGAACGAT+TGG + chr5_1:24554344-24554363 Msa0725070:CDS 40.0%
GTCTTACATGAAGTACATGC+TGG + chr5_1:24554366-24554385 Msa0725070:CDS 40.0%
CATGAAGTACATGCTGGATT+TGG + chr5_1:24554372-24554391 Msa0725070:CDS 40.0%
ACAAACATTCAAGGGCTCAT+TGG - chr5_1:24554560-24554579 None:intergenic 40.0%
GTTTGTCAAGGAGTTCATGA+TGG + chr5_1:24554574-24554593 Msa0725070:CDS 40.0%
!!! ATTCTGGTTCTCTTTTACCG+AGG + chr5_1:24554671-24554690 Msa0725070:CDS 40.0%
TTCCGTGAAATAATCCGAAG+CGG + chr5_1:24554775-24554794 Msa0725070:CDS 40.0%
GAACCGAACTTCTTGTGTTT+GGG + chr5_1:24554971-24554990 Msa0725070:CDS 40.0%
TTGACAAATTCATGGTCCTC+TGG + chr5_1:24555033-24555052 Msa0725070:CDS 40.0%
AGCATTCATTCTCATTCCAG+AGG - chr5_1:24555052-24555071 None:intergenic 40.0%
CTAATATCGCAATCTCACCA+AGG - chr5_1:24555101-24555120 None:intergenic 40.0%
ATTAGCAGGTGGTTGTGATT+CGG + chr5_1:24555116-24555135 Msa0725070:CDS 40.0%
TTCCTCGGTTTATTCATGCT+CGG - chr5_1:24555204-24555223 None:intergenic 40.0%
GATGTGTTCTGGTGTATTCA+TGG + chr5_1:24555224-24555243 Msa0725070:CDS 40.0%
TGTTCTGGTGTATTCATGGA+TGG + chr5_1:24555228-24555247 Msa0725070:CDS 40.0%
AGGAATTTCTGTCCATGTTC+TGG - chr5_1:24555331-24555350 None:intergenic 40.0%
TTATCTACAACGGCAATGAG+AGG - chr5_1:24555414-24555433 None:intergenic 40.0%
! TCATTGTTATTGGTGGACCT+AGG + chr5_1:24555580-24555599 Msa0725070:CDS 40.0%
TGAACCAAAGTTGTGCAACT+CGG - chr5_1:24555778-24555797 None:intergenic 40.0%
GACACTGGATTCTTGCTAAT+TGG + chr5_1:24555807-24555826 Msa0725070:three_prime_UTR 40.0%
AGCTTGGTATCATGTAGCAA+AGG + chr5_1:24556022-24556041 Msa0725070:three_prime_UTR 40.0%
TTGTAACTTGACCTCTCTCT+TGG + chr5_1:24556177-24556196 Msa0725070:three_prime_UTR 40.0%
! CCAATTTTCAACCAAGAGAG+AGG - chr5_1:24556191-24556210 None:intergenic 40.0%
CCTCTCTCTTGGTTGAAAAT+TGG + chr5_1:24556188-24556207 Msa0725070:three_prime_UTR 40.0%
! ATTTTGCAGAGACATGTTGG+AGG + chr5_1:24554285-24554304 Msa0725070:intron 40.0%
! TTTTGCAGAGACATGTTGGA+GGG + chr5_1:24554286-24554305 Msa0725070:intron 40.0%
CTTGTGAAACAGAGAACGAT+TGG + chr5_1:24554344-24554363 Msa0725070:CDS 40.0%
GTCTTACATGAAGTACATGC+TGG + chr5_1:24554366-24554385 Msa0725070:CDS 40.0%
CATGAAGTACATGCTGGATT+TGG + chr5_1:24554372-24554391 Msa0725070:CDS 40.0%
ACAAACATTCAAGGGCTCAT+TGG - chr5_1:24554560-24554579 None:intergenic 40.0%
GTTTGTCAAGGAGTTCATGA+TGG + chr5_1:24554574-24554593 Msa0725070:CDS 40.0%
!!! ATTCTGGTTCTCTTTTACCG+AGG + chr5_1:24554671-24554690 Msa0725070:CDS 40.0%
TTCCGTGAAATAATCCGAAG+CGG + chr5_1:24554775-24554794 Msa0725070:CDS 40.0%
GAACCGAACTTCTTGTGTTT+GGG + chr5_1:24554971-24554990 Msa0725070:CDS 40.0%
TTGACAAATTCATGGTCCTC+TGG + chr5_1:24555033-24555052 Msa0725070:CDS 40.0%
AGCATTCATTCTCATTCCAG+AGG - chr5_1:24555052-24555071 None:intergenic 40.0%
CTAATATCGCAATCTCACCA+AGG - chr5_1:24555101-24555120 None:intergenic 40.0%
ATTAGCAGGTGGTTGTGATT+CGG + chr5_1:24555116-24555135 Msa0725070:CDS 40.0%
TTCCTCGGTTTATTCATGCT+CGG - chr5_1:24555204-24555223 None:intergenic 40.0%
GATGTGTTCTGGTGTATTCA+TGG + chr5_1:24555224-24555243 Msa0725070:CDS 40.0%
TGTTCTGGTGTATTCATGGA+TGG + chr5_1:24555228-24555247 Msa0725070:CDS 40.0%
AGGAATTTCTGTCCATGTTC+TGG - chr5_1:24555331-24555350 None:intergenic 40.0%
TTATCTACAACGGCAATGAG+AGG - chr5_1:24555414-24555433 None:intergenic 40.0%
! TCATTGTTATTGGTGGACCT+AGG + chr5_1:24555580-24555599 Msa0725070:CDS 40.0%
TGAACCAAAGTTGTGCAACT+CGG - chr5_1:24555778-24555797 None:intergenic 40.0%
GACACTGGATTCTTGCTAAT+TGG + chr5_1:24555807-24555826 Msa0725070:three_prime_UTR 40.0%
AGCTTGGTATCATGTAGCAA+AGG + chr5_1:24556022-24556041 Msa0725070:three_prime_UTR 40.0%
TTGTAACTTGACCTCTCTCT+TGG + chr5_1:24556177-24556196 Msa0725070:three_prime_UTR 40.0%
! CCAATTTTCAACCAAGAGAG+AGG - chr5_1:24556191-24556210 None:intergenic 40.0%
CCTCTCTCTTGGTTGAAAAT+TGG + chr5_1:24556188-24556207 Msa0725070:three_prime_UTR 40.0%
CTGAGGATGAACATCATCCT+AGG + chr5_1:24554434-24554453 Msa0725070:CDS 45.0%
GAGCCCTTGAATGTTTGTCA+AGG + chr5_1:24554562-24554581 Msa0725070:CDS 45.0%
TGTCAAGGAGTTCATGATGG+TGG + chr5_1:24554577-24554596 Msa0725070:CDS 45.0%
CGCTGTTCAAGGTCTGATTA+TGG + chr5_1:24554727-24554746 Msa0725070:CDS 45.0%
ATCTATAAACCTCGCCGCTT+CGG - chr5_1:24554792-24554811 None:intergenic 45.0%
GAGGAGACTAAACGGTATCA+TGG + chr5_1:24554813-24554832 Msa0725070:CDS 45.0%
! CAATCGTTTGAAGCCATCCT+CGG - chr5_1:24554916-24554935 None:intergenic 45.0%
GGAACCGAACTTCTTGTGTT+TGG + chr5_1:24554970-24554989 Msa0725070:CDS 45.0%
CCTCCCAAACACAAGAAGTT+CGG - chr5_1:24554977-24554996 None:intergenic 45.0%
CGAACTTCTTGTGTTTGGGA+GGG + chr5_1:24554975-24554994 Msa0725070:CDS 45.0%
GGTGAGATTGCGATATTAGC+AGG + chr5_1:24555102-24555121 Msa0725070:CDS 45.0%
GAGATTGCGATATTAGCAGG+TGG + chr5_1:24555105-24555124 Msa0725070:CDS 45.0%
TCCTCGGTTTATTCATGCTC+GGG - chr5_1:24555203-24555222 None:intergenic 45.0%
AAACCGAGGAAGATGTGTTC+TGG + chr5_1:24555213-24555232 Msa0725070:CDS 45.0%
ACACCAGAACACATCTTCCT+CGG - chr5_1:24555219-24555238 None:intergenic 45.0%
TATGTTGTAGGTGGAATCGG+CGG + chr5_1:24555258-24555277 Msa0725070:CDS 45.0%
! TGCTGCTGATTATGCTGACA+TGG + chr5_1:24555443-24555462 Msa0725070:CDS 45.0%
AGCGATGTCGATGAATGGTT+GGG + chr5_1:24555527-24555546 Msa0725070:CDS 45.0%
ATGGTTGGGGTCTTGCATTT+AGG + chr5_1:24555541-24555560 Msa0725070:CDS 45.0%
TGGTTGGGGTCTTGCATTTA+GGG + chr5_1:24555542-24555561 Msa0725070:CDS 45.0%
AAACCTTCACCATGAGTCCT+AGG - chr5_1:24555600-24555619 None:intergenic 45.0%
AATTCTTGGGTGCCTAGTGA+AGG + chr5_1:24555630-24555649 Msa0725070:CDS 45.0%
CTACTAGCTCGAAAACGATC+CGG + chr5_1:24555669-24555688 Msa0725070:CDS 45.0%
!! TGGGTTGCTGAAGCATTGAA+CGG + chr5_1:24555718-24555737 Msa0725070:exon 45.0%
TTCACCGAGTTGCACAACTT+TGG + chr5_1:24555771-24555790 Msa0725070:three_prime_UTR 45.0%
! TAGCAAGAATCCAGTGTCGA+TGG - chr5_1:24555805-24555824 None:intergenic 45.0%
CTGAGGATGAACATCATCCT+AGG + chr5_1:24554434-24554453 Msa0725070:CDS 45.0%
GAGCCCTTGAATGTTTGTCA+AGG + chr5_1:24554562-24554581 Msa0725070:CDS 45.0%
TGTCAAGGAGTTCATGATGG+TGG + chr5_1:24554577-24554596 Msa0725070:CDS 45.0%
CGCTGTTCAAGGTCTGATTA+TGG + chr5_1:24554727-24554746 Msa0725070:CDS 45.0%
ATCTATAAACCTCGCCGCTT+CGG - chr5_1:24554792-24554811 None:intergenic 45.0%
GAGGAGACTAAACGGTATCA+TGG + chr5_1:24554813-24554832 Msa0725070:CDS 45.0%
! CAATCGTTTGAAGCCATCCT+CGG - chr5_1:24554916-24554935 None:intergenic 45.0%
GGAACCGAACTTCTTGTGTT+TGG + chr5_1:24554970-24554989 Msa0725070:CDS 45.0%
CCTCCCAAACACAAGAAGTT+CGG - chr5_1:24554977-24554996 None:intergenic 45.0%
CGAACTTCTTGTGTTTGGGA+GGG + chr5_1:24554975-24554994 Msa0725070:CDS 45.0%
GGTGAGATTGCGATATTAGC+AGG + chr5_1:24555102-24555121 Msa0725070:CDS 45.0%
GAGATTGCGATATTAGCAGG+TGG + chr5_1:24555105-24555124 Msa0725070:CDS 45.0%
TCCTCGGTTTATTCATGCTC+GGG - chr5_1:24555203-24555222 None:intergenic 45.0%
AAACCGAGGAAGATGTGTTC+TGG + chr5_1:24555213-24555232 Msa0725070:CDS 45.0%
ACACCAGAACACATCTTCCT+CGG - chr5_1:24555219-24555238 None:intergenic 45.0%
TATGTTGTAGGTGGAATCGG+CGG + chr5_1:24555258-24555277 Msa0725070:CDS 45.0%
! TGCTGCTGATTATGCTGACA+TGG + chr5_1:24555443-24555462 Msa0725070:CDS 45.0%
AGCGATGTCGATGAATGGTT+GGG + chr5_1:24555527-24555546 Msa0725070:CDS 45.0%
ATGGTTGGGGTCTTGCATTT+AGG + chr5_1:24555541-24555560 Msa0725070:CDS 45.0%
TGGTTGGGGTCTTGCATTTA+GGG + chr5_1:24555542-24555561 Msa0725070:CDS 45.0%
AAACCTTCACCATGAGTCCT+AGG - chr5_1:24555600-24555619 None:intergenic 45.0%
AATTCTTGGGTGCCTAGTGA+AGG + chr5_1:24555630-24555649 Msa0725070:CDS 45.0%
CTACTAGCTCGAAAACGATC+CGG + chr5_1:24555669-24555688 Msa0725070:CDS 45.0%
!! TGGGTTGCTGAAGCATTGAA+CGG + chr5_1:24555718-24555737 Msa0725070:exon 45.0%
TTCACCGAGTTGCACAACTT+TGG + chr5_1:24555771-24555790 Msa0725070:three_prime_UTR 45.0%
! TAGCAAGAATCCAGTGTCGA+TGG - chr5_1:24555805-24555824 None:intergenic 45.0%
!! GTCGTTGCTGTGTTGTTTCG+AGG + chr5_1:24554308-24554327 Msa0725070:CDS 50.0%
GACACACGATTGAGCTGTCT+CGG - chr5_1:24554702-24554721 None:intergenic 50.0%
TGTGTCTCAGTCGCTGTTCA+AGG + chr5_1:24554716-24554735 Msa0725070:CDS 50.0%
CGCCGCTTCGGATTATTTCA+CGG - chr5_1:24554780-24554799 None:intergenic 50.0%
TGAAATAATCCGAAGCGGCG+AGG + chr5_1:24554780-24554799 Msa0725070:CDS 50.0%
GAAGCGGCGAGGTTTATAGA+TGG + chr5_1:24554791-24554810 Msa0725070:CDS 50.0%
GTACGCTTCCCATTCAAGGA+GGG - chr5_1:24554863-24554882 None:intergenic 50.0%
GCATCCACCTTTGGCGAATT+GGG - chr5_1:24554888-24554907 None:intergenic 50.0%
TGCATCCACCTTTGGCGAAT+TGG - chr5_1:24554889-24554908 None:intergenic 50.0%
TCGGCAAATGCATCCACCTT+TGG - chr5_1:24554897-24554916 None:intergenic 50.0%
AAAGGTGGATGCATTTGCCG+AGG + chr5_1:24554896-24554915 Msa0725070:CDS 50.0%
CCGAACTTCTTGTGTTTGGG+AGG + chr5_1:24554974-24554993 Msa0725070:CDS 50.0%
GCAGAGCCGAACAAACATCT+TGG - chr5_1:24555075-24555094 None:intergenic 50.0%
TCCCGAGCATGAATAAACCG+AGG + chr5_1:24555199-24555218 Msa0725070:CDS 50.0%
GAAATTCCTGACATGTCCCC+CGG + chr5_1:24555342-24555361 Msa0725070:CDS 50.0%
AGAACCCCTACTACTTCGTC+CGG - chr5_1:24555364-24555383 None:intergenic 50.0%
TCTACAACGGCAATGAGAGG+CGG - chr5_1:24555411-24555430 None:intergenic 50.0%
TTCATCGACATCGCTCGTTC+TGG - chr5_1:24555522-24555541 None:intergenic 50.0%
GAACGAGCGATGTCGATGAA+TGG + chr5_1:24555522-24555541 Msa0725070:CDS 50.0%
GAGCGATGTCGATGAATGGT+TGG + chr5_1:24555526-24555545 Msa0725070:CDS 50.0%
GCGATGTCGATGAATGGTTG+GGG + chr5_1:24555528-24555547 Msa0725070:CDS 50.0%
! GGTCTTGCATTTAGGGCATG+CGG + chr5_1:24555549-24555568 Msa0725070:CDS 50.0%
! ATTGGTGGACCTAGGACTCA+TGG + chr5_1:24555588-24555607 Msa0725070:CDS 50.0%
!! GTCGTTGCTGTGTTGTTTCG+AGG + chr5_1:24554308-24554327 Msa0725070:CDS 50.0%
GACACACGATTGAGCTGTCT+CGG - chr5_1:24554702-24554721 None:intergenic 50.0%
TGTGTCTCAGTCGCTGTTCA+AGG + chr5_1:24554716-24554735 Msa0725070:CDS 50.0%
CGCCGCTTCGGATTATTTCA+CGG - chr5_1:24554780-24554799 None:intergenic 50.0%
TGAAATAATCCGAAGCGGCG+AGG + chr5_1:24554780-24554799 Msa0725070:CDS 50.0%
GAAGCGGCGAGGTTTATAGA+TGG + chr5_1:24554791-24554810 Msa0725070:CDS 50.0%
GTACGCTTCCCATTCAAGGA+GGG - chr5_1:24554863-24554882 None:intergenic 50.0%
GCATCCACCTTTGGCGAATT+GGG - chr5_1:24554888-24554907 None:intergenic 50.0%
TGCATCCACCTTTGGCGAAT+TGG - chr5_1:24554889-24554908 None:intergenic 50.0%
TCGGCAAATGCATCCACCTT+TGG - chr5_1:24554897-24554916 None:intergenic 50.0%
AAAGGTGGATGCATTTGCCG+AGG + chr5_1:24554896-24554915 Msa0725070:CDS 50.0%
CCGAACTTCTTGTGTTTGGG+AGG + chr5_1:24554974-24554993 Msa0725070:CDS 50.0%
GCAGAGCCGAACAAACATCT+TGG - chr5_1:24555075-24555094 None:intergenic 50.0%
TCCCGAGCATGAATAAACCG+AGG + chr5_1:24555199-24555218 Msa0725070:CDS 50.0%
GAAATTCCTGACATGTCCCC+CGG + chr5_1:24555342-24555361 Msa0725070:CDS 50.0%
AGAACCCCTACTACTTCGTC+CGG - chr5_1:24555364-24555383 None:intergenic 50.0%
TCTACAACGGCAATGAGAGG+CGG - chr5_1:24555411-24555430 None:intergenic 50.0%
TTCATCGACATCGCTCGTTC+TGG - chr5_1:24555522-24555541 None:intergenic 50.0%
GAACGAGCGATGTCGATGAA+TGG + chr5_1:24555522-24555541 Msa0725070:CDS 50.0%
GAGCGATGTCGATGAATGGT+TGG + chr5_1:24555526-24555545 Msa0725070:CDS 50.0%
GCGATGTCGATGAATGGTTG+GGG + chr5_1:24555528-24555547 Msa0725070:CDS 50.0%
! GGTCTTGCATTTAGGGCATG+CGG + chr5_1:24555549-24555568 Msa0725070:CDS 50.0%
! ATTGGTGGACCTAGGACTCA+TGG + chr5_1:24555588-24555607 Msa0725070:CDS 50.0%
TCTGATGAGGAGCAGCATGC+TGG + chr5_1:24554637-24554656 Msa0725070:CDS 55.0%
GCAGCATGCTGGAGATTCGT+CGG + chr5_1:24554648-24554667 Msa0725070:CDS 55.0%
GCTGGAGATTCGTCGGATTC+TGG + chr5_1:24554655-24554674 Msa0725070:CDS 55.0%
GAGCTGTCTCGGTTCATCCT+CGG - chr5_1:24554691-24554710 None:intergenic 55.0%
GCGGCGAGGTTTATAGATGG+AGG + chr5_1:24554794-24554813 Msa0725070:CDS 55.0%
TCTCGTGTGCCCTCCTTGAA+TGG + chr5_1:24554851-24554870 Msa0725070:CDS 55.0%
CTCGTGTGCCCTCCTTGAAT+GGG + chr5_1:24554852-24554871 Msa0725070:CDS 55.0%
CGTACGCTTCCCATTCAAGG+AGG - chr5_1:24554864-24554883 None:intergenic 55.0%
GGTCGTACGCTTCCCATTCA+AGG - chr5_1:24554867-24554886 None:intergenic 55.0%
CGTACGACCCAATTCGCCAA+AGG + chr5_1:24554878-24554897 Msa0725070:CDS 55.0%
ACGACCCAATTCGCCAAAGG+TGG + chr5_1:24554881-24554900 Msa0725070:CDS 55.0%
GTGGATGCATTTGCCGAGGA+TGG + chr5_1:24554900-24554919 Msa0725070:CDS 55.0%
TTGTTCGGCTCTGCAAGCCT+TGG + chr5_1:24555081-24555100 Msa0725070:CDS 55.0%
! AGCAGGTGGTTGTGATTCGG+AGG + chr5_1:24555119-24555138 Msa0725070:CDS 55.0%
! GCAGGTGGTTGTGATTCGGA+GGG + chr5_1:24555120-24555139 Msa0725070:CDS 55.0%
AACCCCTACTACTTCGTCCG+GGG - chr5_1:24555362-24555381 None:intergenic 55.0%
GAACCCCTACTACTTCGTCC+GGG - chr5_1:24555363-24555382 None:intergenic 55.0%
GGACCTAGGACTCATGGTGA+AGG + chr5_1:24555594-24555613 Msa0725070:CDS 55.0%
CATTGCGGAGGTCCTTCACT+AGG - chr5_1:24555645-24555664 None:intergenic 55.0%
CTAGTGAAGGACCTCCGCAA+TGG + chr5_1:24555643-24555662 Msa0725070:CDS 55.0%
CGAGCTAGTAGACGCCATTG+CGG - chr5_1:24555660-24555679 None:intergenic 55.0%
GGTTCATCGTCCATCGACAC+TGG + chr5_1:24555792-24555811 Msa0725070:three_prime_UTR 55.0%
TCTGATGAGGAGCAGCATGC+TGG + chr5_1:24554637-24554656 Msa0725070:CDS 55.0%
GCAGCATGCTGGAGATTCGT+CGG + chr5_1:24554648-24554667 Msa0725070:CDS 55.0%
GCTGGAGATTCGTCGGATTC+TGG + chr5_1:24554655-24554674 Msa0725070:CDS 55.0%
GAGCTGTCTCGGTTCATCCT+CGG - chr5_1:24554691-24554710 None:intergenic 55.0%
GCGGCGAGGTTTATAGATGG+AGG + chr5_1:24554794-24554813 Msa0725070:CDS 55.0%
TCTCGTGTGCCCTCCTTGAA+TGG + chr5_1:24554851-24554870 Msa0725070:CDS 55.0%
CTCGTGTGCCCTCCTTGAAT+GGG + chr5_1:24554852-24554871 Msa0725070:CDS 55.0%
CGTACGCTTCCCATTCAAGG+AGG - chr5_1:24554864-24554883 None:intergenic 55.0%
GGTCGTACGCTTCCCATTCA+AGG - chr5_1:24554867-24554886 None:intergenic 55.0%
CGTACGACCCAATTCGCCAA+AGG + chr5_1:24554878-24554897 Msa0725070:CDS 55.0%
ACGACCCAATTCGCCAAAGG+TGG + chr5_1:24554881-24554900 Msa0725070:CDS 55.0%
GTGGATGCATTTGCCGAGGA+TGG + chr5_1:24554900-24554919 Msa0725070:CDS 55.0%
TTGTTCGGCTCTGCAAGCCT+TGG + chr5_1:24555081-24555100 Msa0725070:CDS 55.0%
! AGCAGGTGGTTGTGATTCGG+AGG + chr5_1:24555119-24555138 Msa0725070:CDS 55.0%
! GCAGGTGGTTGTGATTCGGA+GGG + chr5_1:24555120-24555139 Msa0725070:CDS 55.0%
AACCCCTACTACTTCGTCCG+GGG - chr5_1:24555362-24555381 None:intergenic 55.0%
GAACCCCTACTACTTCGTCC+GGG - chr5_1:24555363-24555382 None:intergenic 55.0%
GGACCTAGGACTCATGGTGA+AGG + chr5_1:24555594-24555613 Msa0725070:CDS 55.0%
CATTGCGGAGGTCCTTCACT+AGG - chr5_1:24555645-24555664 None:intergenic 55.0%
CTAGTGAAGGACCTCCGCAA+TGG + chr5_1:24555643-24555662 Msa0725070:CDS 55.0%
CGAGCTAGTAGACGCCATTG+CGG - chr5_1:24555660-24555679 None:intergenic 55.0%
GGTTCATCGTCCATCGACAC+TGG + chr5_1:24555792-24555811 Msa0725070:three_prime_UTR 55.0%
TGTCCCCCGGACGAAGTAGT+AGG + chr5_1:24555355-24555374 Msa0725070:CDS 60.0%
GTCCCCCGGACGAAGTAGTA+GGG + chr5_1:24555356-24555375 Msa0725070:CDS 60.0%
TCCCCCGGACGAAGTAGTAG+GGG + chr5_1:24555357-24555376 Msa0725070:CDS 60.0%
ACCCCTACTACTTCGTCCGG+GGG - chr5_1:24555361-24555380 None:intergenic 60.0%
TGAGATGCCTGCTGCAACCG+AGG + chr5_1:24555383-24555402 Msa0725070:CDS 60.0%
GCTAGTAGACGCCATTGCGG+AGG - chr5_1:24555657-24555676 None:intergenic 60.0%
TGTCCCCCGGACGAAGTAGT+AGG + chr5_1:24555355-24555374 Msa0725070:CDS 60.0%
GTCCCCCGGACGAAGTAGTA+GGG + chr5_1:24555356-24555375 Msa0725070:CDS 60.0%
TCCCCCGGACGAAGTAGTAG+GGG + chr5_1:24555357-24555376 Msa0725070:CDS 60.0%
ACCCCTACTACTTCGTCCGG+GGG - chr5_1:24555361-24555380 None:intergenic 60.0%
TGAGATGCCTGCTGCAACCG+AGG + chr5_1:24555383-24555402 Msa0725070:CDS 60.0%
GCTAGTAGACGCCATTGCGG+AGG - chr5_1:24555657-24555676 None:intergenic 60.0%
CTTCGTCCGGGGGACATGTC+AGG - chr5_1:24555351-24555370 None:intergenic 65.0%
GGCAATGAGAGGCGGTGCCT+CGG - chr5_1:24555403-24555422 None:intergenic 65.0%
CTTCGTCCGGGGGACATGTC+AGG - chr5_1:24555351-24555370 None:intergenic 65.0%
GGCAATGAGAGGCGGTGCCT+CGG - chr5_1:24555403-24555422 None:intergenic 65.0%
GGCGGTGCCTCGGTTGCAGC+AGG - chr5_1:24555393-24555412 None:intergenic 75.0%
GGCGGTGCCTCGGTTGCAGC+AGG - chr5_1:24555393-24555412 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 24553855 24556246 24553855 ID=Msa0725070;Name=Msa0725070
chr5_1 mRNA 24553855 24556246 24553855 ID=Msa0725070-mRNA-1;Parent=Msa0725070;Name=Msa0725070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|0.5|1|1|2|518|479
chr5_1 exon 24553855 24553859 24553855 ID=Msa0725070-mRNA-1:exon:8937;Parent=Msa0725070-mRNA-1
chr5_1 exon 24554294 24556246 24554294 ID=Msa0725070-mRNA-1:exon:8938;Parent=Msa0725070-mRNA-1
chr5_1 CDS 24553855 24553859 24553855 ID=Msa0725070-mRNA-1:cds;Parent=Msa0725070-mRNA-1
chr5_1 CDS 24554294 24555728 24554294 ID=Msa0725070-mRNA-1:cds;Parent=Msa0725070-mRNA-1
chr5_1 three_prime_UTR 24555729 24556246 24555729 ID=Msa0725070-mRNA-1:three_prime_utr;Parent=Msa0725070-mRNA-1
Gene Sequence

>Msa0725070

ATGGGAGACATGTTGGAGGGTCGTTGCTGTGTTGTTTCGAGGTTGTTTTGTAGCACTTGTGAAACAGAGAACGATTGGTCTTACATGAAGTACATGCTGGATTTGGACATCAAAAATGGCAAAAGACCGATGAATATTGATTCTGCTGAGGATGAACATCATCCTAGGAAGTGTACTAAGATGTTGGAATCTTGTCACATAGTTGAAACGGTTTGTATTTCGTTGCAACATCCTAAGGATTCTGTTCTTTCTCAAACGGATCAGAAAACCAATGAGCCCTTGAATGTTTGTCAAGGAGTTCATGATGGTGGTGATTCAATAGATTCATCAGATTCTGTTATTCAGCAATCTGATGAGGAGCAGCATGCTGGAGATTCGTCGGATTCTGGTTCTCTTTTACCGAGGATGAACCGAGACAGCTCAATCGTGTGTCTCAGTCGCTGTTCAAGGTCTGATTATGGTTCGCTTGCTTCGCTGAATAGAAGCTTCCGTGAAATAATCCGAAGCGGCGAGGTTTATAGATGGAGGAGACTAAACGGTATCATGGAACATTGGGTTTATTTCTCGTGTGCCCTCCTTGAATGGGAAGCGTACGACCCAATTCGCCAAAGGTGGATGCATTTGCCGAGGATGGCTTCAAACGATTGTTTCATGTGTTCTGATAAAGAATCTTTAGCTGTAGGAACCGAACTTCTTGTGTTTGGGAGGGAGCTTAGATCTCATGTGATATATAGATACAGTCTTTTGACAAATTCATGGTCCTCTGGAATGAGAATGAATGCTCCAAGATGTTTGTTCGGCTCTGCAAGCCTTGGTGAGATTGCGATATTAGCAGGTGGTTGTGATTCGGAGGGACGTATACTTGACTCCGCTGAACTATACAATTCTGAGACGCAAACATTTGAACTACTCCCGAGCATGAATAAACCGAGGAAGATGTGTTCTGGTGTATTCATGGATGGAAAATTTTATGTTGTAGGTGGAATCGGCGGACGCGATTCAAAGCTTCTTACATGCGGTGAAGAGTATAATTTACAAACCAGAACATGGACAGAAATTCCTGACATGTCCCCCGGACGAAGTAGTAGGGGTTCTGAGATGCCTGCTGCAACCGAGGCACCGCCTCTCATTGCCGTTGTAGATAATGAATTGTATGCTGCTGATTATGCTGACATGGAAGTTAAAAGGTATGACAAGGAAAGAAAACTGTGGATTACTGTTGGTAGACTTCCAGAACGAGCGATGTCGATGAATGGTTGGGGTCTTGCATTTAGGGCATGCGGAAATATGCTCATTGTTATTGGTGGACCTAGGACTCATGGTGAAGGTTTCATTGAACTCAATTCTTGGGTGCCTAGTGAAGGACCTCCGCAATGGCGTCTACTAGCTCGAAAACGATCCGGTAACTTCGTTTATAATTGTGCTGTGATGGGTTGCTGA
Protein sequence

>Msa0725070

MGDMLEGRCCVVSRLFCSTCETENDWSYMKYMLDLDIKNGKRPMNIDSAEDEHHPRKCTKMLESCHIVETVCISLQHPKDSVLSQTDQKTNEPLNVCQGVHDGGDSIDSSDSVIQQSDEEQHAGDSSDSGSLLPRMNRDSSIVCLSRCSRSDYGSLASLNRSFREIIRSGEVYRWRRLNGIMEHWVYFSCALLEWEAYDPIRQRWMHLPRMASNDCFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGRILDSAELYNSETQTFELLPSMNKPRKMCSGVFMDGKFYVVGGIGGRDSKLLTCGEEYNLQTRTWTEIPDMSPGRSSRGSEMPAATEAPPLIAVVDNELYAADYADMEVKRYDKERKLWITVGRLPERAMSMNGWGLAFRACGNMLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLARKRSGNFVYNCAVMGC*