Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725690 | AFK35821.1 | 89.686 | 223 | 21 | 2 | 1 | 222 | 1 | 222 | 2.07e-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725690 | sp|P42815|RNS3_ARATH | 53.731 | 201 | 92 | 1 | 12 | 212 | 7 | 206 | 5.66e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725690 | I3S6C9 | 89.686 | 223 | 21 | 2 | 1 | 222 | 1 | 222 | 9.88e-137 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0725690 | Msa1024350 | 0.802589 | 5.222289e-49 | -8.615850e-47 |
| Msa0725690 | Msa1230790 | 0.806457 | 8.149517e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725690 | MtrunA17_Chr5g0417401 | 91.031 | 223 | 18 | 2 | 1 | 222 | 1 | 222 | 4.06e-138 | 386 |
| Msa0725690 | MtrunA17_Chr5g0417381 | 71.041 | 221 | 64 | 0 | 1 | 221 | 1 | 221 | 7.14e-110 | 314 |
| Msa0725690 | MtrunA17_Chr5g0417391 | 68.182 | 220 | 69 | 1 | 1 | 219 | 1 | 220 | 1.03e-109 | 314 |
| Msa0725690 | MtrunA17_Chr5g0417371 | 65.566 | 212 | 72 | 1 | 1 | 212 | 1 | 211 | 7.30e-104 | 299 |
| Msa0725690 | MtrunA17_Chr5g0417321 | 56.190 | 210 | 91 | 1 | 4 | 212 | 3 | 212 | 9.77e-82 | 243 |
| Msa0725690 | MtrunA17_Chr5g0417341 | 54.327 | 208 | 93 | 2 | 7 | 212 | 6 | 213 | 3.80e-78 | 234 |
| Msa0725690 | MtrunA17_Chr8g0347611 | 38.506 | 174 | 95 | 5 | 26 | 188 | 41 | 213 | 4.00e-27 | 104 |
| Msa0725690 | MtrunA17_Chr6g0483091 | 31.718 | 227 | 139 | 9 | 1 | 219 | 1 | 219 | 1.32e-23 | 94.4 |
| Msa0725690 | MtrunA17_Chr2g0287471 | 29.891 | 184 | 116 | 8 | 34 | 215 | 163 | 335 | 6.89e-18 | 80.9 |
| Msa0725690 | MtrunA17_Chr3g0089091 | 30.412 | 194 | 122 | 9 | 28 | 216 | 79 | 264 | 9.00e-17 | 77.0 |
| Msa0725690 | MtrunA17_Chr6g0479301 | 30.120 | 166 | 104 | 5 | 28 | 186 | 78 | 238 | 1.00e-16 | 77.0 |
| Msa0725690 | MtrunA17_Chr3g0089081 | 29.897 | 194 | 123 | 9 | 28 | 216 | 70 | 255 | 3.48e-16 | 75.1 |
| Msa0725690 | MtrunA17_Chr5g0439761 | 26.636 | 214 | 147 | 8 | 9 | 219 | 1 | 207 | 5.64e-16 | 73.9 |
| Msa0725690 | MtrunA17_Chr4g0028501 | 28.342 | 187 | 115 | 8 | 27 | 211 | 20 | 189 | 1.52e-15 | 72.4 |
| Msa0725690 | MtrunA17_Chr2g0333421 | 37.500 | 80 | 50 | 0 | 106 | 185 | 10 | 89 | 5.41e-13 | 63.9 |
| Msa0725690 | MtrunA17_Chr8g0350611 | 29.744 | 195 | 126 | 7 | 28 | 219 | 104 | 290 | 2.41e-12 | 64.7 |
| Msa0725690 | MtrunA17_Chr6g0479341 | 27.957 | 186 | 115 | 9 | 27 | 204 | 70 | 244 | 6.80e-11 | 60.5 |
| Msa0725690 | MtrunA17_Chr5g0439991 | 30.233 | 129 | 80 | 3 | 84 | 211 | 3 | 122 | 9.90e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725690 | AT1G14220.1 | 54.106 | 207 | 94 | 1 | 6 | 212 | 7 | 212 | 4.60e-84 | 249 |
| Msa0725690 | AT1G26820.1 | 53.731 | 201 | 92 | 1 | 12 | 212 | 7 | 206 | 5.75e-82 | 244 |
| Msa0725690 | AT2G02990.1 | 48.636 | 220 | 113 | 0 | 3 | 222 | 5 | 224 | 3.21e-76 | 229 |
| Msa0725690 | AT1G14210.1 | 44.292 | 219 | 117 | 3 | 8 | 222 | 5 | 222 | 1.75e-60 | 190 |
| Msa0725690 | AT2G39780.1 | 36.813 | 182 | 103 | 5 | 24 | 194 | 28 | 208 | 1.68e-31 | 116 |
| Msa0725690 | AT2G39780.2 | 30.286 | 175 | 92 | 4 | 24 | 194 | 28 | 176 | 2.69e-17 | 77.8 |
Find 44 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTGTCCACCAGATTATT+AGG | 0.177097 | 5_1:-25455946 | None:intergenic |
| TACATGTGCGTGGACATTTC+TGG | 0.212476 | 5_1:+25455904 | Msa0725690:CDS |
| TTGAGGACTTGGAAATAAAT+TGG | 0.227388 | 5_1:+25455470 | Msa0725690:CDS |
| GCATCTTCTATAATACTAAA+AGG | 0.257076 | 5_1:-25455814 | None:intergenic |
| CTTTCAGTGCCCTAATAATC+TGG | 0.313274 | 5_1:+25455936 | Msa0725690:CDS |
| CCTAGGCCTGAGTCCATAAA+TGG | 0.346597 | 5_1:-25455284 | None:intergenic |
| CTCAGACCTCATTGAGGACT+TGG | 0.347081 | 5_1:+25455459 | Msa0725690:CDS |
| AAGTAGCTTTAATAAATCTA+AGG | 0.347244 | 5_1:+25455345 | Msa0725690:CDS |
| TCTCGATTACATTCTATTCC+TGG | 0.351859 | 5_1:-25455850 | None:intergenic |
| ATGTCGTAAAATTGATCATT+TGG | 0.360780 | 5_1:-25455784 | None:intergenic |
| GTCTCAGCAATATTAAAATA+TGG | 0.390714 | 5_1:+25455512 | Msa0725690:CDS |
| GCTGCCGGTTTACCAGCTTT+CGG | 0.393216 | 5_1:-25455253 | None:intergenic |
| CTCCGTCCTTAAGCATTTGA+AGG | 0.400642 | 5_1:-25455633 | None:intergenic |
| TTAAAATATGGTCACATGAA+TGG | 0.407215 | 5_1:+25455524 | Msa0725690:CDS |
| CTCAGGCCTAGGTTCAATAA+TGG | 0.408774 | 5_1:+25455295 | Msa0725690:CDS |
| AGTTGTCCACCAGATTATTA+GGG | 0.422040 | 5_1:-25455945 | None:intergenic |
| AAATAAATTGGCCATCTTTG+AGG | 0.430194 | 5_1:+25455482 | Msa0725690:CDS |
| AGTATTATAGAAGATGCTAC+AGG | 0.442254 | 5_1:+25455820 | Msa0725690:CDS |
| GAACCTCCTTCAAATGCTTA+AGG | 0.448027 | 5_1:+25455627 | Msa0725690:CDS |
| CTCGATTACATTCTATTCCT+GGG | 0.468968 | 5_1:-25455849 | None:intergenic |
| ACTTTGAATATCACAGTTTG+TGG | 0.472813 | 5_1:-25455326 | None:intergenic |
| CATCTTCTATAATACTAAAA+GGG | 0.478258 | 5_1:-25455813 | None:intergenic |
| TTATCCGAAAGCTGGTAAAC+CGG | 0.478941 | 5_1:+25455249 | Msa0725690:CDS |
| CCATTTATGGACTCAGGCCT+AGG | 0.481605 | 5_1:+25455284 | Msa0725690:CDS |
| CTTTGAATATCACAGTTTGT+GGG | 0.498452 | 5_1:-25455325 | None:intergenic |
| TTGTTAATTATGCAGTGGCC+AGG | 0.514750 | 5_1:+25455196 | Msa0725690:intron |
| TTTGAGTCACAGTATGATCC+TGG | 0.517780 | 5_1:-25455214 | None:intergenic |
| AATCAAAATCTTGAGCAGAA+AGG | 0.530770 | 5_1:-25455074 | None:intergenic |
| GGCTGCTGTTATCCGAAAGC+TGG | 0.532517 | 5_1:+25455241 | Msa0725690:CDS |
| ATATTGCAGTATCAAAAGCT+TGG | 0.539152 | 5_1:-25455037 | None:intergenic |
| AGACGTGGACACCTCAAAGA+TGG | 0.567402 | 5_1:-25455493 | None:intergenic |
| TTTAAAAGTTTACATGTGCG+TGG | 0.582503 | 5_1:+25455894 | Msa0725690:CDS |
| TCATACTGTGACTCAAAACT+AGG | 0.585017 | 5_1:+25455220 | Msa0725690:CDS |
| CGTCCTTAAGCATTTGAAGG+AGG | 0.590421 | 5_1:-25455630 | None:intergenic |
| CTCCTTCAAATGCTTAAGGA+CGG | 0.603583 | 5_1:+25455631 | Msa0725690:CDS |
| GATGCTACAGGGTTTCTCCC+AGG | 0.608007 | 5_1:+25455832 | Msa0725690:CDS |
| TAAATGGTAAAATCTGCTGC+CGG | 0.617207 | 5_1:-25455268 | None:intergenic |
| GATGTTCCATTATTGAACCT+AGG | 0.620727 | 5_1:-25455301 | None:intergenic |
| TTATTTCCAAGTCCTCAATG+AGG | 0.634399 | 5_1:-25455465 | None:intergenic |
| GTATTATAGAAGATGCTACA+GGG | 0.644202 | 5_1:+25455821 | Msa0725690:CDS |
| TCAGTGCCCTAATAATCTGG+TGG | 0.647022 | 5_1:+25455939 | Msa0725690:CDS |
| ATAGATCTCAGACCTCATTG+AGG | 0.655708 | 5_1:+25455453 | Msa0725690:intron |
| CTTCAAATGCTTAAGGACGG+AGG | 0.682572 | 5_1:+25455634 | Msa0725690:CDS |
| TCACATGAATGGATGAAACA+TGG | 0.720853 | 5_1:+25455535 | Msa0725690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACACTAATAAAATCATA+AGG | - | chr5_1:25455391-25455410 | None:intergenic | 15.0% |
| !! | TAAAATTTCTAATCATTTGA+AGG | + | chr5_1:25455740-25455759 | Msa0725690:intron | 15.0% |
| !! | AATACACTAATAAAATCATA+AGG | - | chr5_1:25455391-25455410 | None:intergenic | 15.0% |
| !! | TAAAATTTCTAATCATTTGA+AGG | + | chr5_1:25455740-25455759 | Msa0725690:intron | 15.0% |
| !!! | AAGTAGCTTTAATAAATCTA+AGG | + | chr5_1:25455345-25455364 | Msa0725690:CDS | 20.0% |
| !! | TCAATAAGTCAAACTTAATT+TGG | + | chr5_1:25455429-25455448 | Msa0725690:intron | 20.0% |
| !! | CATCTTCTATAATACTAAAA+GGG | - | chr5_1:25455816-25455835 | None:intergenic | 20.0% |
| !!! | AAGTAGCTTTAATAAATCTA+AGG | + | chr5_1:25455345-25455364 | Msa0725690:CDS | 20.0% |
| !! | TCAATAAGTCAAACTTAATT+TGG | + | chr5_1:25455429-25455448 | Msa0725690:intron | 20.0% |
| !! | CATCTTCTATAATACTAAAA+GGG | - | chr5_1:25455816-25455835 | None:intergenic | 20.0% |
| ! | GTAATTACAGATATTGTTGA+TGG | + | chr5_1:25455117-25455136 | Msa0725690:intron | 25.0% |
| !! | ATTGTTTGTTAATTATGCAG+TGG | + | chr5_1:25455191-25455210 | Msa0725690:intron | 25.0% |
| ! | GTCTCAGCAATATTAAAATA+TGG | + | chr5_1:25455512-25455531 | Msa0725690:CDS | 25.0% |
| ! | TTAAAATATGGTCACATGAA+TGG | + | chr5_1:25455524-25455543 | Msa0725690:CDS | 25.0% |
| ! | TTGCAAATATATATGTGTGT+GGG | - | chr5_1:25455718-25455737 | None:intergenic | 25.0% |
| ! | TTTGCAAATATATATGTGTG+TGG | - | chr5_1:25455719-25455738 | None:intergenic | 25.0% |
| ! | ATTTGAAGGTAATGAATTTC+AGG | + | chr5_1:25455754-25455773 | Msa0725690:intron | 25.0% |
| ! | ATGTCGTAAAATTGATCATT+TGG | - | chr5_1:25455787-25455806 | None:intergenic | 25.0% |
| !! | AATGATCAATTTTACGACAT+AGG | + | chr5_1:25455787-25455806 | Msa0725690:CDS | 25.0% |
| ! | GCATCTTCTATAATACTAAA+AGG | - | chr5_1:25455817-25455836 | None:intergenic | 25.0% |
| ! | GTAATTACAGATATTGTTGA+TGG | + | chr5_1:25455117-25455136 | Msa0725690:intron | 25.0% |
| !! | ATTGTTTGTTAATTATGCAG+TGG | + | chr5_1:25455191-25455210 | Msa0725690:intron | 25.0% |
| ! | GTCTCAGCAATATTAAAATA+TGG | + | chr5_1:25455512-25455531 | Msa0725690:CDS | 25.0% |
| ! | TTAAAATATGGTCACATGAA+TGG | + | chr5_1:25455524-25455543 | Msa0725690:CDS | 25.0% |
| ! | TTGCAAATATATATGTGTGT+GGG | - | chr5_1:25455718-25455737 | None:intergenic | 25.0% |
| ! | TTTGCAAATATATATGTGTG+TGG | - | chr5_1:25455719-25455738 | None:intergenic | 25.0% |
| ! | ATTTGAAGGTAATGAATTTC+AGG | + | chr5_1:25455754-25455773 | Msa0725690:intron | 25.0% |
| ! | ATGTCGTAAAATTGATCATT+TGG | - | chr5_1:25455787-25455806 | None:intergenic | 25.0% |
| !! | AATGATCAATTTTACGACAT+AGG | + | chr5_1:25455787-25455806 | Msa0725690:CDS | 25.0% |
| ! | GCATCTTCTATAATACTAAA+AGG | - | chr5_1:25455817-25455836 | None:intergenic | 25.0% |
| ATATTGCAGTATCAAAAGCT+TGG | - | chr5_1:25455040-25455059 | None:intergenic | 30.0% | |
| AATCAAAATCTTGAGCAGAA+AGG | - | chr5_1:25455077-25455096 | None:intergenic | 30.0% | |
| !! | TTTCTTCACTTTTATTCTGC+AGG | + | chr5_1:25455095-25455114 | Msa0725690:CDS | 30.0% |
| ! | ATTTTACCATTTATGGACTC+AGG | + | chr5_1:25455278-25455297 | Msa0725690:CDS | 30.0% |
| CTTTGAATATCACAGTTTGT+GGG | - | chr5_1:25455328-25455347 | None:intergenic | 30.0% | |
| ACTTTGAATATCACAGTTTG+TGG | - | chr5_1:25455329-25455348 | None:intergenic | 30.0% | |
| TTGAGGACTTGGAAATAAAT+TGG | + | chr5_1:25455470-25455489 | Msa0725690:CDS | 30.0% | |
| AAATAAATTGGCCATCTTTG+AGG | + | chr5_1:25455482-25455501 | Msa0725690:CDS | 30.0% | |
| !! | ATTTTAATATTGCTGAGACG+TGG | - | chr5_1:25455511-25455530 | None:intergenic | 30.0% |
| AGTATTATAGAAGATGCTAC+AGG | + | chr5_1:25455820-25455839 | Msa0725690:CDS | 30.0% | |
| GTATTATAGAAGATGCTACA+GGG | + | chr5_1:25455821-25455840 | Msa0725690:CDS | 30.0% | |
| TTTAAAAGTTTACATGTGCG+TGG | + | chr5_1:25455894-25455913 | Msa0725690:CDS | 30.0% | |
| ATATTGCAGTATCAAAAGCT+TGG | - | chr5_1:25455040-25455059 | None:intergenic | 30.0% | |
| AATCAAAATCTTGAGCAGAA+AGG | - | chr5_1:25455077-25455096 | None:intergenic | 30.0% | |
| !! | TTTCTTCACTTTTATTCTGC+AGG | + | chr5_1:25455095-25455114 | Msa0725690:CDS | 30.0% |
| ! | ATTTTACCATTTATGGACTC+AGG | + | chr5_1:25455278-25455297 | Msa0725690:CDS | 30.0% |
| CTTTGAATATCACAGTTTGT+GGG | - | chr5_1:25455328-25455347 | None:intergenic | 30.0% | |
| ACTTTGAATATCACAGTTTG+TGG | - | chr5_1:25455329-25455348 | None:intergenic | 30.0% | |
| TTGAGGACTTGGAAATAAAT+TGG | + | chr5_1:25455470-25455489 | Msa0725690:CDS | 30.0% | |
| AAATAAATTGGCCATCTTTG+AGG | + | chr5_1:25455482-25455501 | Msa0725690:CDS | 30.0% | |
| !! | ATTTTAATATTGCTGAGACG+TGG | - | chr5_1:25455511-25455530 | None:intergenic | 30.0% |
| AGTATTATAGAAGATGCTAC+AGG | + | chr5_1:25455820-25455839 | Msa0725690:CDS | 30.0% | |
| GTATTATAGAAGATGCTACA+GGG | + | chr5_1:25455821-25455840 | Msa0725690:CDS | 30.0% | |
| TTTAAAAGTTTACATGTGCG+TGG | + | chr5_1:25455894-25455913 | Msa0725690:CDS | 30.0% | |
| TCATACTGTGACTCAAAACT+AGG | + | chr5_1:25455220-25455239 | Msa0725690:CDS | 35.0% | |
| TAAATGGTAAAATCTGCTGC+CGG | - | chr5_1:25455271-25455290 | None:intergenic | 35.0% | |
| ! | GCAGCAGATTTTACCATTTA+TGG | + | chr5_1:25455271-25455290 | Msa0725690:CDS | 35.0% |
| GATGTTCCATTATTGAACCT+AGG | - | chr5_1:25455304-25455323 | None:intergenic | 35.0% | |
| TTATTTCCAAGTCCTCAATG+AGG | - | chr5_1:25455468-25455487 | None:intergenic | 35.0% | |
| TCACATGAATGGATGAAACA+TGG | + | chr5_1:25455535-25455554 | Msa0725690:CDS | 35.0% | |
| CTCGATTACATTCTATTCCT+GGG | - | chr5_1:25455852-25455871 | None:intergenic | 35.0% | |
| TCTCGATTACATTCTATTCC+TGG | - | chr5_1:25455853-25455872 | None:intergenic | 35.0% | |
| AGTTGTCCACCAGATTATTA+GGG | - | chr5_1:25455948-25455967 | None:intergenic | 35.0% | |
| TCATACTGTGACTCAAAACT+AGG | + | chr5_1:25455220-25455239 | Msa0725690:CDS | 35.0% | |
| TAAATGGTAAAATCTGCTGC+CGG | - | chr5_1:25455271-25455290 | None:intergenic | 35.0% | |
| ! | GCAGCAGATTTTACCATTTA+TGG | + | chr5_1:25455271-25455290 | Msa0725690:CDS | 35.0% |
| GATGTTCCATTATTGAACCT+AGG | - | chr5_1:25455304-25455323 | None:intergenic | 35.0% | |
| TTATTTCCAAGTCCTCAATG+AGG | - | chr5_1:25455468-25455487 | None:intergenic | 35.0% | |
| TCACATGAATGGATGAAACA+TGG | + | chr5_1:25455535-25455554 | Msa0725690:CDS | 35.0% | |
| CTCGATTACATTCTATTCCT+GGG | - | chr5_1:25455852-25455871 | None:intergenic | 35.0% | |
| TCTCGATTACATTCTATTCC+TGG | - | chr5_1:25455853-25455872 | None:intergenic | 35.0% | |
| AGTTGTCCACCAGATTATTA+GGG | - | chr5_1:25455948-25455967 | None:intergenic | 35.0% | |
| TTGTTAATTATGCAGTGGCC+AGG | + | chr5_1:25455196-25455215 | Msa0725690:intron | 40.0% | |
| TTTGAGTCACAGTATGATCC+TGG | - | chr5_1:25455217-25455236 | None:intergenic | 40.0% | |
| TTATCCGAAAGCTGGTAAAC+CGG | + | chr5_1:25455249-25455268 | Msa0725690:CDS | 40.0% | |
| ATAGATCTCAGACCTCATTG+AGG | + | chr5_1:25455453-25455472 | Msa0725690:intron | 40.0% | |
| GAACCTCCTTCAAATGCTTA+AGG | + | chr5_1:25455627-25455646 | Msa0725690:CDS | 40.0% | |
| CTCCTTCAAATGCTTAAGGA+CGG | + | chr5_1:25455631-25455650 | Msa0725690:CDS | 40.0% | |
| CTTTCAGTGCCCTAATAATC+TGG | + | chr5_1:25455936-25455955 | Msa0725690:CDS | 40.0% | |
| CAGTTGTCCACCAGATTATT+AGG | - | chr5_1:25455949-25455968 | None:intergenic | 40.0% | |
| TTGTTAATTATGCAGTGGCC+AGG | + | chr5_1:25455196-25455215 | Msa0725690:intron | 40.0% | |
| TTTGAGTCACAGTATGATCC+TGG | - | chr5_1:25455217-25455236 | None:intergenic | 40.0% | |
| TTATCCGAAAGCTGGTAAAC+CGG | + | chr5_1:25455249-25455268 | Msa0725690:CDS | 40.0% | |
| ATAGATCTCAGACCTCATTG+AGG | + | chr5_1:25455453-25455472 | Msa0725690:intron | 40.0% | |
| GAACCTCCTTCAAATGCTTA+AGG | + | chr5_1:25455627-25455646 | Msa0725690:CDS | 40.0% | |
| CTCCTTCAAATGCTTAAGGA+CGG | + | chr5_1:25455631-25455650 | Msa0725690:CDS | 40.0% | |
| CTTTCAGTGCCCTAATAATC+TGG | + | chr5_1:25455936-25455955 | Msa0725690:CDS | 40.0% | |
| CAGTTGTCCACCAGATTATT+AGG | - | chr5_1:25455949-25455968 | None:intergenic | 40.0% | |
| CTCAGGCCTAGGTTCAATAA+TGG | + | chr5_1:25455295-25455314 | Msa0725690:CDS | 45.0% | |
| CGTCCTTAAGCATTTGAAGG+AGG | - | chr5_1:25455633-25455652 | None:intergenic | 45.0% | |
| CTCCGTCCTTAAGCATTTGA+AGG | - | chr5_1:25455636-25455655 | None:intergenic | 45.0% | |
| CTTCAAATGCTTAAGGACGG+AGG | + | chr5_1:25455634-25455653 | Msa0725690:CDS | 45.0% | |
| TACATGTGCGTGGACATTTC+TGG | + | chr5_1:25455904-25455923 | Msa0725690:CDS | 45.0% | |
| TCAGTGCCCTAATAATCTGG+TGG | + | chr5_1:25455939-25455958 | Msa0725690:CDS | 45.0% | |
| CTCAGGCCTAGGTTCAATAA+TGG | + | chr5_1:25455295-25455314 | Msa0725690:CDS | 45.0% | |
| CGTCCTTAAGCATTTGAAGG+AGG | - | chr5_1:25455633-25455652 | None:intergenic | 45.0% | |
| CTCCGTCCTTAAGCATTTGA+AGG | - | chr5_1:25455636-25455655 | None:intergenic | 45.0% | |
| CTTCAAATGCTTAAGGACGG+AGG | + | chr5_1:25455634-25455653 | Msa0725690:CDS | 45.0% | |
| TACATGTGCGTGGACATTTC+TGG | + | chr5_1:25455904-25455923 | Msa0725690:CDS | 45.0% | |
| TCAGTGCCCTAATAATCTGG+TGG | + | chr5_1:25455939-25455958 | Msa0725690:CDS | 45.0% | |
| CCTAGGCCTGAGTCCATAAA+TGG | - | chr5_1:25455287-25455306 | None:intergenic | 50.0% | |
| CCATTTATGGACTCAGGCCT+AGG | + | chr5_1:25455284-25455303 | Msa0725690:CDS | 50.0% | |
| CTCAGACCTCATTGAGGACT+TGG | + | chr5_1:25455459-25455478 | Msa0725690:CDS | 50.0% | |
| AGACGTGGACACCTCAAAGA+TGG | - | chr5_1:25455496-25455515 | None:intergenic | 50.0% | |
| CCTAGGCCTGAGTCCATAAA+TGG | - | chr5_1:25455287-25455306 | None:intergenic | 50.0% | |
| CCATTTATGGACTCAGGCCT+AGG | + | chr5_1:25455284-25455303 | Msa0725690:CDS | 50.0% | |
| CTCAGACCTCATTGAGGACT+TGG | + | chr5_1:25455459-25455478 | Msa0725690:CDS | 50.0% | |
| AGACGTGGACACCTCAAAGA+TGG | - | chr5_1:25455496-25455515 | None:intergenic | 50.0% | |
| GGCTGCTGTTATCCGAAAGC+TGG | + | chr5_1:25455241-25455260 | Msa0725690:CDS | 55.0% | |
| !! | GCTGCCGGTTTACCAGCTTT+CGG | - | chr5_1:25455256-25455275 | None:intergenic | 55.0% |
| GATGCTACAGGGTTTCTCCC+AGG | + | chr5_1:25455832-25455851 | Msa0725690:CDS | 55.0% | |
| GGCTGCTGTTATCCGAAAGC+TGG | + | chr5_1:25455241-25455260 | Msa0725690:CDS | 55.0% | |
| !! | GCTGCCGGTTTACCAGCTTT+CGG | - | chr5_1:25455256-25455275 | None:intergenic | 55.0% |
| GATGCTACAGGGTTTCTCCC+AGG | + | chr5_1:25455832-25455851 | Msa0725690:CDS | 55.0% | |
| GTGTGGGCGCGCGAGTGTGT+GGG | - | chr5_1:25455702-25455721 | None:intergenic | 70.0% | |
| TGTGTGGGCGCGCGAGTGTG+TGG | - | chr5_1:25455703-25455722 | None:intergenic | 70.0% | |
| GTGTGGGCGCGCGAGTGTGT+GGG | - | chr5_1:25455702-25455721 | None:intergenic | 70.0% | |
| TGTGTGGGCGCGCGAGTGTG+TGG | - | chr5_1:25455703-25455722 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25455009 | 25455978 | 25455009 | ID=Msa0725690;Name=Msa0725690 |
| chr5_1 | mRNA | 25455009 | 25455978 | 25455009 | ID=Msa0725690-mRNA-1;Parent=Msa0725690;Name=Msa0725690-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|4|0|222 |
| chr5_1 | exon | 25455009 | 25455116 | 25455009 | ID=Msa0725690-mRNA-1:exon:9212;Parent=Msa0725690-mRNA-1 |
| chr5_1 | exon | 25455211 | 25455366 | 25455211 | ID=Msa0725690-mRNA-1:exon:9213;Parent=Msa0725690-mRNA-1 |
| chr5_1 | exon | 25455457 | 25455655 | 25455457 | ID=Msa0725690-mRNA-1:exon:9214;Parent=Msa0725690-mRNA-1 |
| chr5_1 | exon | 25455776 | 25455978 | 25455776 | ID=Msa0725690-mRNA-1:exon:9215;Parent=Msa0725690-mRNA-1 |
| chr5_1 | CDS | 25455009 | 25455116 | 25455009 | ID=Msa0725690-mRNA-1:cds;Parent=Msa0725690-mRNA-1 |
| chr5_1 | CDS | 25455211 | 25455366 | 25455211 | ID=Msa0725690-mRNA-1:cds;Parent=Msa0725690-mRNA-1 |
| chr5_1 | CDS | 25455457 | 25455655 | 25455457 | ID=Msa0725690-mRNA-1:cds;Parent=Msa0725690-mRNA-1 |
| chr5_1 | CDS | 25455776 | 25455978 | 25455776 | ID=Msa0725690-mRNA-1:cds;Parent=Msa0725690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
