AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024350 MtrunA17_Chr7g0242161 88.182 220 23 2 1 217 1 220 1.02e-138 387
Msa1024350 MtrunA17_Chr7g0242191 55.276 199 82 3 22 217 26 220 4.61e-66 203
Msa1024350 MtrunA17_Chr7g0242171 56.075 107 42 2 1 102 1 107 2.08e-29 105
Msa1024350 MtrunA17_Chr3g0108171 29.412 153 108 0 63 215 1813 1965 5.30e-16 76.3
Msa1024350 MtrunA17_Chr3g0107261 24.837 153 115 0 63 215 245 397 5.82e-12 63.9
Msa1024350 MtrunA17_Chr2g0304131 24.183 153 116 0 63 215 161 313 2.80e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTACCAATAATTGTTTC+TGG 0.192780 7_1:+53495480 None:intergenic
ATGCGACTCTAAATATTTAA+AGG 0.198899 7_1:+53493656 None:intergenic
TAATAGGAAGCGGCAAATTA+TGG 0.259557 7_1:-53493702 Msa1024350:CDS
TTCCAATGAGAAAGATGATA+TGG 0.262322 7_1:-53493735 Msa1024350:CDS
GTGTGTTTCTAACCGTCTTC+TGG 0.296829 7_1:+53495536 None:intergenic
GCTACTAATTTGAAACTTGT+TGG 0.326817 7_1:-53493818 Msa1024350:CDS
TGCGACTCTAAATATTTAAA+GGG 0.337279 7_1:+53493657 None:intergenic
TAATGTAGTCATCAAGTCTA+AGG 0.337618 7_1:+53493982 None:intergenic
CAAGCCCCAGAAACAATTAT+TGG 0.339566 7_1:-53495486 Msa1024350:intron
CTCGATGTTATTAATATGTA+TGG 0.342114 7_1:-53493938 Msa1024350:CDS
ATATGGGTTACGTTTCTAAT+AGG 0.350204 7_1:-53493718 Msa1024350:CDS
ACCCATATCATCTTTCTCAT+TGG 0.377678 7_1:+53493733 None:intergenic
CTGAGGAGTCGCGCATCCTT+AGG 0.402078 7_1:+53494124 None:intergenic
ACGTACCAATAATTGTTTCT+GGG 0.415337 7_1:+53495481 None:intergenic
TTTGAAACTTGTTGGAGAGT+TGG 0.425030 7_1:-53493810 Msa1024350:CDS
CGCATCCTTAGGTGGAAAAT+CGG 0.437870 7_1:+53494135 None:intergenic
GAAACTTGTTGGAGAGTTGG+AGG 0.476211 7_1:-53493807 Msa1024350:CDS
TCCAATGAGAAAGATGATAT+GGG 0.503817 7_1:-53493734 Msa1024350:CDS
ACTTGTTGGAGAGTTGGAGG+AGG 0.522944 7_1:-53493804 Msa1024350:CDS
ATTAATATGTATGGCTTCAG+AGG 0.525794 7_1:-53493929 Msa1024350:CDS
AGGTGAATGGCTTGATGACT+TGG 0.526503 7_1:-53493909 Msa1024350:CDS
AAAACATTACGCCGAGGTGC+AGG 0.528899 7_1:+53494175 None:intergenic
TCGCAAGAGCTTGAGGAAGT+TGG 0.534058 7_1:+53494015 None:intergenic
AGCTCCACGTCTTATGTCAA+GGG 0.547099 7_1:+53494051 None:intergenic
AAGCTCCACGTCTTATGTCA+AGG 0.560627 7_1:+53494050 None:intergenic
TAAGGATGCGCGACTCCTCA+GGG 0.564280 7_1:-53494122 Msa1024350:CDS
CGTACCAATAATTGTTTCTG+GGG 0.566692 7_1:+53495482 None:intergenic
TTCTTTGGCGATATCAAGAG+TGG 0.567082 7_1:+53493868 None:intergenic
TCTTTACAGGTCCTGCACCT+CGG 0.572942 7_1:-53494186 Msa1024350:intron
GTTACGTTTCTAATAGGAAG+CGG 0.584262 7_1:-53493712 Msa1024350:CDS
TTAAAATCACATGTTGCTGA+AGG 0.586212 7_1:-53493962 Msa1024350:CDS
ATGTTCATCTCGACCATCGG+TGG 0.593884 7_1:+53495578 None:intergenic
TCTTGATATCGCCAAAGAAG+AGG 0.598911 7_1:-53493864 Msa1024350:CDS
TTGGCGATATCAAGAGTGGA+GGG 0.601865 7_1:+53493872 None:intergenic
ATGATGTTCATCTCGACCAT+CGG 0.604506 7_1:+53495575 None:intergenic
AGTGTGATCGCAAGAGCTTG+AGG 0.610597 7_1:+53494008 None:intergenic
TTTGGCGATATCAAGAGTGG+AGG 0.621011 7_1:+53493871 None:intergenic
TGTATGGCTTCAGAGGTGAA+TGG 0.635609 7_1:-53493922 Msa1024350:CDS
TGTTCATCTCGACCATCGGT+GGG 0.646572 7_1:+53495579 None:intergenic
CATCCCCTTGACATAAGACG+TGG 0.651438 7_1:-53494055 Msa1024350:CDS
AAATCGGCAACAACAGAGCG+TGG 0.663909 7_1:+53494151 None:intergenic
GCGACTCTAAATATTTAAAG+GGG 0.664927 7_1:+53493658 None:intergenic
GCTCCACGTCTTATGTCAAG+GGG 0.665557 7_1:+53494052 None:intergenic
CACAACGAGCTTCAGCGCAG+AGG 0.671568 7_1:-53495516 Msa1024350:CDS
ACAGTAGAAGAACCAGAAGA+CGG 0.678706 7_1:-53495548 Msa1024350:CDS
CGTGGTAAAACATTACGCCG+AGG 0.728823 7_1:+53494169 None:intergenic
GACGAGCAGAAAATTCCCTG+AGG 0.767412 7_1:+53494107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAACATAAAAATAAA+AGG - chr7_1:53494473-53494492 Msa1024350:intron 10.0%
!! ATAATAATAATAAGTATTTG+TGG - chr7_1:53494799-53494818 Msa1024350:intron 10.0%
!! TGAAAAAACATAAAAATAAA+AGG - chr7_1:53494473-53494492 Msa1024350:intron 10.0%
!! ATAATAATAATAAGTATTTG+TGG - chr7_1:53494799-53494818 Msa1024350:intron 10.0%
!!! AATTTTTTACTATTATACGA+GGG - chr7_1:53493962-53493981 Msa1024350:CDS 15.0%
!!! TAGATTTTGAAAAAGTTATT+GGG - chr7_1:53494186-53494205 Msa1024350:intron 15.0%
!!! ATGTTTTTTCAGATTATTTA+GGG + chr7_1:53494464-53494483 None:intergenic 15.0%
!!! TATGTTTTTTCAGATTATTT+AGG + chr7_1:53494465-53494484 None:intergenic 15.0%
!! AAAAACATAAAAATAAAAGG+AGG - chr7_1:53494476-53494495 Msa1024350:intron 15.0%
!!! TATGATTTTTATGCTATATT+TGG + chr7_1:53494741-53494760 None:intergenic 15.0%
!! TATTATTATTATTTGAGCAA+AGG + chr7_1:53494788-53494807 None:intergenic 15.0%
!!! AATTTTTTACTATTATACGA+GGG - chr7_1:53493962-53493981 Msa1024350:CDS 15.0%
!!! TAGATTTTGAAAAAGTTATT+GGG - chr7_1:53494186-53494205 Msa1024350:intron 15.0%
!!! ATGTTTTTTCAGATTATTTA+GGG + chr7_1:53494464-53494483 None:intergenic 15.0%
!!! TATGTTTTTTCAGATTATTT+AGG + chr7_1:53494465-53494484 None:intergenic 15.0%
!! AAAAACATAAAAATAAAAGG+AGG - chr7_1:53494476-53494495 Msa1024350:intron 15.0%
!!! TATGATTTTTATGCTATATT+TGG + chr7_1:53494741-53494760 None:intergenic 15.0%
!! TATTATTATTATTTGAGCAA+AGG + chr7_1:53494788-53494807 None:intergenic 15.0%
!! GACTTAAAAAACAATGTTAT+TGG - chr7_1:53493879-53493898 Msa1024350:CDS 20.0%
!! CTCGTATAATAGTAAAAAAT+TGG + chr7_1:53493963-53493982 None:intergenic 20.0%
!!! CAATTTTTTACTATTATACG+AGG - chr7_1:53493961-53493980 Msa1024350:CDS 20.0%
!! GACTTAAAAAACAATGTTAT+TGG - chr7_1:53493879-53493898 Msa1024350:CDS 20.0%
!! AAGCAAGAAACTTAAAAAAT+TGG + chr7_1:53494156-53494175 None:intergenic 20.0%
!!! GTAGATTTTGAAAAAGTTAT+TGG - chr7_1:53494185-53494204 Msa1024350:intron 20.0%
!!! TGGGAAGTTTTTTTAATTTA+TGG - chr7_1:53494205-53494224 Msa1024350:intron 20.0%
!!! AAAAACTTCCTACTTTTTTT+TGG - chr7_1:53494666-53494685 Msa1024350:intron 20.0%
!! TTTATTAGCCAAAAAAAAGT+AGG + chr7_1:53494677-53494696 None:intergenic 20.0%
!! GACTTAAAAAACAATGTTAT+TGG - chr7_1:53493879-53493898 Msa1024350:CDS 20.0%
!! CTCGTATAATAGTAAAAAAT+TGG + chr7_1:53493963-53493982 None:intergenic 20.0%
!!! CAATTTTTTACTATTATACG+AGG - chr7_1:53493961-53493980 Msa1024350:CDS 20.0%
!! GACTTAAAAAACAATGTTAT+TGG - chr7_1:53493879-53493898 Msa1024350:CDS 20.0%
!! AAGCAAGAAACTTAAAAAAT+TGG + chr7_1:53494156-53494175 None:intergenic 20.0%
!!! GTAGATTTTGAAAAAGTTAT+TGG - chr7_1:53494185-53494204 Msa1024350:intron 20.0%
!!! TGGGAAGTTTTTTTAATTTA+TGG - chr7_1:53494205-53494224 Msa1024350:intron 20.0%
!!! AAAAACTTCCTACTTTTTTT+TGG - chr7_1:53494666-53494685 Msa1024350:intron 20.0%
!! TTTATTAGCCAAAAAAAAGT+AGG + chr7_1:53494677-53494696 None:intergenic 20.0%
!! ATTTTGTGAAAAGCTAATAC+GGG + chr7_1:53494316-53494335 None:intergenic 25.0%
!! GATTTTGTGAAAAGCTAATA+CGG + chr7_1:53494317-53494336 None:intergenic 25.0%
! AATCCACTAGATATTATTGT+TGG - chr7_1:53494533-53494552 Msa1024350:intron 25.0%
! AATCCAACAATAATATCTAG+TGG + chr7_1:53494539-53494558 None:intergenic 25.0%
! TAACTTAGAGTAATGTTTGA+TGG - chr7_1:53494576-53494595 Msa1024350:intron 25.0%
! TAAAGTAGTAGACTTCTAAT+AGG + chr7_1:53494615-53494634 None:intergenic 25.0%
!!! AGGAAGTTTTTGTTTTTTGA+AGG + chr7_1:53494657-53494676 None:intergenic 25.0%
! GGTTTATAAAATAAAGTGAG+AGG + chr7_1:53494720-53494739 None:intergenic 25.0%
! CTCGATGTTATTAATATGTA+TGG - chr7_1:53495308-53495327 Msa1024350:intron 25.0%
!! ATTTTGTGAAAAGCTAATAC+GGG + chr7_1:53494316-53494335 None:intergenic 25.0%
!! GATTTTGTGAAAAGCTAATA+CGG + chr7_1:53494317-53494336 None:intergenic 25.0%
! AATCCACTAGATATTATTGT+TGG - chr7_1:53494533-53494552 Msa1024350:intron 25.0%
! AATCCAACAATAATATCTAG+TGG + chr7_1:53494539-53494558 None:intergenic 25.0%
! TAACTTAGAGTAATGTTTGA+TGG - chr7_1:53494576-53494595 Msa1024350:intron 25.0%
! TAAAGTAGTAGACTTCTAAT+AGG + chr7_1:53494615-53494634 None:intergenic 25.0%
!!! AGGAAGTTTTTGTTTTTTGA+AGG + chr7_1:53494657-53494676 None:intergenic 25.0%
! GGTTTATAAAATAAAGTGAG+AGG + chr7_1:53494720-53494739 None:intergenic 25.0%
! CTCGATGTTATTAATATGTA+TGG - chr7_1:53495308-53495327 Msa1024350:intron 25.0%
! ACGTACCAATAATTGTTTCT+GGG + chr7_1:53493768-53493787 None:intergenic 30.0%
ATACTTAAGTGTTAGAGCTT+CGG + chr7_1:53494000-53494019 None:intergenic 30.0%
GTTGTATTGTGTTTACTTTC+TGG + chr7_1:53494382-53494401 None:intergenic 30.0%
! TGCTTTGAACTATCCATAAA+AGG + chr7_1:53494510-53494529 None:intergenic 30.0%
!! AGTTGATGTGTTTTCTTTAC+AGG - chr7_1:53495047-53495066 Msa1024350:intron 30.0%
TAATGTAGTCATCAAGTCTA+AGG + chr7_1:53495267-53495286 None:intergenic 30.0%
TTAAAATCACATGTTGCTGA+AGG - chr7_1:53495284-53495303 Msa1024350:intron 30.0%
ATTAATATGTATGGCTTCAG+AGG - chr7_1:53495317-53495336 Msa1024350:intron 30.0%
! GCTACTAATTTGAAACTTGT+TGG - chr7_1:53495428-53495447 Msa1024350:intron 30.0%
TTCCAATGAGAAAGATGATA+TGG - chr7_1:53495511-53495530 Msa1024350:CDS 30.0%
TCCAATGAGAAAGATGATAT+GGG - chr7_1:53495512-53495531 Msa1024350:CDS 30.0%
! ATATGGGTTACGTTTCTAAT+AGG - chr7_1:53495528-53495547 Msa1024350:CDS 30.0%
! ACGTACCAATAATTGTTTCT+GGG + chr7_1:53493768-53493787 None:intergenic 30.0%
ATACTTAAGTGTTAGAGCTT+CGG + chr7_1:53494000-53494019 None:intergenic 30.0%
GTTGTATTGTGTTTACTTTC+TGG + chr7_1:53494382-53494401 None:intergenic 30.0%
! TGCTTTGAACTATCCATAAA+AGG + chr7_1:53494510-53494529 None:intergenic 30.0%
!! AGTTGATGTGTTTTCTTTAC+AGG - chr7_1:53495047-53495066 Msa1024350:intron 30.0%
TAATGTAGTCATCAAGTCTA+AGG + chr7_1:53495267-53495286 None:intergenic 30.0%
TTAAAATCACATGTTGCTGA+AGG - chr7_1:53495284-53495303 Msa1024350:intron 30.0%
ATTAATATGTATGGCTTCAG+AGG - chr7_1:53495317-53495336 Msa1024350:intron 30.0%
! GCTACTAATTTGAAACTTGT+TGG - chr7_1:53495428-53495447 Msa1024350:intron 30.0%
TTCCAATGAGAAAGATGATA+TGG - chr7_1:53495511-53495530 Msa1024350:CDS 30.0%
TCCAATGAGAAAGATGATAT+GGG - chr7_1:53495512-53495531 Msa1024350:CDS 30.0%
! ATATGGGTTACGTTTCTAAT+AGG - chr7_1:53495528-53495547 Msa1024350:CDS 30.0%
!! CGTACCAATAATTGTTTCTG+GGG + chr7_1:53493767-53493786 None:intergenic 35.0%
CACGTACCAATAATTGTTTC+TGG + chr7_1:53493769-53493788 None:intergenic 35.0%
CCTAAGAACAACATCTCATT+TGG + chr7_1:53493846-53493865 None:intergenic 35.0%
CCAAATGAGATGTTGTTCTT+AGG - chr7_1:53493843-53493862 Msa1024350:CDS 35.0%
!! CTAATACGGGTAGTTTGTTT+GGG + chr7_1:53494303-53494322 None:intergenic 35.0%
! GGAGGTAATCATTCCTTTTA+TGG - chr7_1:53494494-53494513 Msa1024350:intron 35.0%
GTAGACTTCTAATAGGTAGA+TGG + chr7_1:53494608-53494627 None:intergenic 35.0%
!! TTTGAAACTTGTTGGAGAGT+TGG - chr7_1:53495436-53495455 Msa1024350:intron 35.0%
ACCCATATCATCTTTCTCAT+TGG + chr7_1:53495516-53495535 None:intergenic 35.0%
GTTACGTTTCTAATAGGAAG+CGG - chr7_1:53495534-53495553 Msa1024350:CDS 35.0%
TAATAGGAAGCGGCAAATTA+TGG - chr7_1:53495544-53495563 Msa1024350:CDS 35.0%
!! CGTACCAATAATTGTTTCTG+GGG + chr7_1:53493767-53493786 None:intergenic 35.0%
CACGTACCAATAATTGTTTC+TGG + chr7_1:53493769-53493788 None:intergenic 35.0%
CCTAAGAACAACATCTCATT+TGG + chr7_1:53493846-53493865 None:intergenic 35.0%
CCAAATGAGATGTTGTTCTT+AGG - chr7_1:53493843-53493862 Msa1024350:CDS 35.0%
!! CTAATACGGGTAGTTTGTTT+GGG + chr7_1:53494303-53494322 None:intergenic 35.0%
! GGAGGTAATCATTCCTTTTA+TGG - chr7_1:53494494-53494513 Msa1024350:intron 35.0%
GTAGACTTCTAATAGGTAGA+TGG + chr7_1:53494608-53494627 None:intergenic 35.0%
!! TTTGAAACTTGTTGGAGAGT+TGG - chr7_1:53495436-53495455 Msa1024350:intron 35.0%
ACCCATATCATCTTTCTCAT+TGG + chr7_1:53495516-53495535 None:intergenic 35.0%
GTTACGTTTCTAATAGGAAG+CGG - chr7_1:53495534-53495553 Msa1024350:CDS 35.0%
TAATAGGAAGCGGCAAATTA+TGG - chr7_1:53495544-53495563 Msa1024350:CDS 35.0%
ATGATGTTCATCTCGACCAT+CGG + chr7_1:53493674-53493693 None:intergenic 40.0%
ACAGTAGAAGAACCAGAAGA+CGG - chr7_1:53493698-53493717 Msa1024350:CDS 40.0%
CAAGCCCCAGAAACAATTAT+TGG - chr7_1:53493760-53493779 Msa1024350:CDS 40.0%
!! GCTAATACGGGTAGTTTGTT+TGG + chr7_1:53494304-53494323 None:intergenic 40.0%
GACTTCTAATAGGTAGATGG+AGG + chr7_1:53494605-53494624 None:intergenic 40.0%
TTCTTTGGCGATATCAAGAG+TGG + chr7_1:53495381-53495400 None:intergenic 40.0%
TCTTGATATCGCCAAAGAAG+AGG - chr7_1:53495382-53495401 Msa1024350:intron 40.0%
ATGATGTTCATCTCGACCAT+CGG + chr7_1:53493674-53493693 None:intergenic 40.0%
ACAGTAGAAGAACCAGAAGA+CGG - chr7_1:53493698-53493717 Msa1024350:CDS 40.0%
CAAGCCCCAGAAACAATTAT+TGG - chr7_1:53493760-53493779 Msa1024350:CDS 40.0%
!! GCTAATACGGGTAGTTTGTT+TGG + chr7_1:53494304-53494323 None:intergenic 40.0%
GACTTCTAATAGGTAGATGG+AGG + chr7_1:53494605-53494624 None:intergenic 40.0%
TTCTTTGGCGATATCAAGAG+TGG + chr7_1:53495381-53495400 None:intergenic 40.0%
TCTTGATATCGCCAAAGAAG+AGG - chr7_1:53495382-53495401 Msa1024350:intron 40.0%
! GTGTGTTTCTAACCGTCTTC+TGG + chr7_1:53493713-53493732 None:intergenic 45.0%
!!! TGTTGCCGATTTTCCACCTA+AGG - chr7_1:53495106-53495125 Msa1024350:intron 45.0%
CGCATCCTTAGGTGGAAAAT+CGG + chr7_1:53495114-53495133 None:intergenic 45.0%
! GAATTTTCTGCTCGTCATGC+TGG - chr7_1:53495146-53495165 Msa1024350:intron 45.0%
AGCTCCACGTCTTATGTCAA+GGG + chr7_1:53495198-53495217 None:intergenic 45.0%
AAGCTCCACGTCTTATGTCA+AGG + chr7_1:53495199-53495218 None:intergenic 45.0%
TGTATGGCTTCAGAGGTGAA+TGG - chr7_1:53495324-53495343 Msa1024350:intron 45.0%
! AGGTGAATGGCTTGATGACT+TGG - chr7_1:53495337-53495356 Msa1024350:intron 45.0%
TTGGCGATATCAAGAGTGGA+GGG + chr7_1:53495377-53495396 None:intergenic 45.0%
TTTGGCGATATCAAGAGTGG+AGG + chr7_1:53495378-53495397 None:intergenic 45.0%
! CAGTTTTCGCACCTCTTCTT+TGG + chr7_1:53495396-53495415 None:intergenic 45.0%
!! GAAACTTGTTGGAGAGTTGG+AGG - chr7_1:53495439-53495458 Msa1024350:intron 45.0%
! GTGTGTTTCTAACCGTCTTC+TGG + chr7_1:53493713-53493732 None:intergenic 45.0%
!!! TGTTGCCGATTTTCCACCTA+AGG - chr7_1:53495106-53495125 Msa1024350:intron 45.0%
CGCATCCTTAGGTGGAAAAT+CGG + chr7_1:53495114-53495133 None:intergenic 45.0%
! GAATTTTCTGCTCGTCATGC+TGG - chr7_1:53495146-53495165 Msa1024350:intron 45.0%
AGCTCCACGTCTTATGTCAA+GGG + chr7_1:53495198-53495217 None:intergenic 45.0%
AAGCTCCACGTCTTATGTCA+AGG + chr7_1:53495199-53495218 None:intergenic 45.0%
TGTATGGCTTCAGAGGTGAA+TGG - chr7_1:53495324-53495343 Msa1024350:intron 45.0%
! AGGTGAATGGCTTGATGACT+TGG - chr7_1:53495337-53495356 Msa1024350:intron 45.0%
TTGGCGATATCAAGAGTGGA+GGG + chr7_1:53495377-53495396 None:intergenic 45.0%
TTTGGCGATATCAAGAGTGG+AGG + chr7_1:53495378-53495397 None:intergenic 45.0%
! CAGTTTTCGCACCTCTTCTT+TGG + chr7_1:53495396-53495415 None:intergenic 45.0%
!! GAAACTTGTTGGAGAGTTGG+AGG - chr7_1:53495439-53495458 Msa1024350:intron 45.0%
!!! TATTTTATTTTTTGAAAAAA+TGG - chr7_1:53494912-53494931 Msa1024350:intron 5.0%
!!! TTTTTATTTTTATTTTGAAA+TGG - chr7_1:53495000-53495019 Msa1024350:intron 5.0%
!!! TATTTTATTTTTTGAAAAAA+TGG - chr7_1:53494912-53494931 Msa1024350:intron 5.0%
!!! TTTTTATTTTTATTTTGAAA+TGG - chr7_1:53495000-53495019 Msa1024350:intron 5.0%
TGTTCATCTCGACCATCGGT+GGG + chr7_1:53493670-53493689 None:intergenic 50.0%
ATGTTCATCTCGACCATCGG+TGG + chr7_1:53493671-53493690 None:intergenic 50.0%
TCTTTACAGGTCCTGCACCT+CGG - chr7_1:53495060-53495079 Msa1024350:intron 50.0%
AAAACATTACGCCGAGGTGC+AGG + chr7_1:53495074-53495093 None:intergenic 50.0%
CGTGGTAAAACATTACGCCG+AGG + chr7_1:53495080-53495099 None:intergenic 50.0%
AAATCGGCAACAACAGAGCG+TGG + chr7_1:53495098-53495117 None:intergenic 50.0%
GACGAGCAGAAAATTCCCTG+AGG + chr7_1:53495142-53495161 None:intergenic 50.0%
CATCCCCTTGACATAAGACG+TGG - chr7_1:53495191-53495210 Msa1024350:intron 50.0%
GCTCCACGTCTTATGTCAAG+GGG + chr7_1:53495197-53495216 None:intergenic 50.0%
TCGCAAGAGCTTGAGGAAGT+TGG + chr7_1:53495234-53495253 None:intergenic 50.0%
AGTGTGATCGCAAGAGCTTG+AGG + chr7_1:53495241-53495260 None:intergenic 50.0%
! ACTTGTTGGAGAGTTGGAGG+AGG - chr7_1:53495442-53495461 Msa1024350:intron 50.0%
TGTTCATCTCGACCATCGGT+GGG + chr7_1:53493670-53493689 None:intergenic 50.0%
ATGTTCATCTCGACCATCGG+TGG + chr7_1:53493671-53493690 None:intergenic 50.0%
TCTTTACAGGTCCTGCACCT+CGG - chr7_1:53495060-53495079 Msa1024350:intron 50.0%
AAAACATTACGCCGAGGTGC+AGG + chr7_1:53495074-53495093 None:intergenic 50.0%
CGTGGTAAAACATTACGCCG+AGG + chr7_1:53495080-53495099 None:intergenic 50.0%
AAATCGGCAACAACAGAGCG+TGG + chr7_1:53495098-53495117 None:intergenic 50.0%
GACGAGCAGAAAATTCCCTG+AGG + chr7_1:53495142-53495161 None:intergenic 50.0%
CATCCCCTTGACATAAGACG+TGG - chr7_1:53495191-53495210 Msa1024350:intron 50.0%
GCTCCACGTCTTATGTCAAG+GGG + chr7_1:53495197-53495216 None:intergenic 50.0%
TCGCAAGAGCTTGAGGAAGT+TGG + chr7_1:53495234-53495253 None:intergenic 50.0%
AGTGTGATCGCAAGAGCTTG+AGG + chr7_1:53495241-53495260 None:intergenic 50.0%
! ACTTGTTGGAGAGTTGGAGG+AGG - chr7_1:53495442-53495461 Msa1024350:intron 50.0%
TAAGGATGCGCGACTCCTCA+GGG - chr7_1:53495124-53495143 Msa1024350:intron 55.0%
TAAGGATGCGCGACTCCTCA+GGG - chr7_1:53495124-53495143 Msa1024350:intron 55.0%
CACAACGAGCTTCAGCGCAG+AGG - chr7_1:53493730-53493749 Msa1024350:CDS 60.0%
AGGAGTCGCGCATCCTTAGG+TGG + chr7_1:53495122-53495141 None:intergenic 60.0%
CTGAGGAGTCGCGCATCCTT+AGG + chr7_1:53495125-53495144 None:intergenic 60.0%
CTAAGGATGCGCGACTCCTC+AGG - chr7_1:53495123-53495142 Msa1024350:intron 60.0%
CACAACGAGCTTCAGCGCAG+AGG - chr7_1:53493730-53493749 Msa1024350:CDS 60.0%
AGGAGTCGCGCATCCTTAGG+TGG + chr7_1:53495122-53495141 None:intergenic 60.0%
CTGAGGAGTCGCGCATCCTT+AGG + chr7_1:53495125-53495144 None:intergenic 60.0%
CTAAGGATGCGCGACTCCTC+AGG - chr7_1:53495123-53495142 Msa1024350:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 53493664 53495604 53493664 ID=Msa1024350;Name=Msa1024350
chr7_1 mRNA 53493664 53495604 53493664 ID=Msa1024350-mRNA-1;Parent=Msa1024350;Name=Msa1024350-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|217
chr7_1 exon 53495487 53495604 53495487 ID=Msa1024350-mRNA-1:exon:10579;Parent=Msa1024350-mRNA-1
chr7_1 exon 53493664 53494199 53493664 ID=Msa1024350-mRNA-1:exon:10578;Parent=Msa1024350-mRNA-1
chr7_1 CDS 53495487 53495604 53495487 ID=Msa1024350-mRNA-1:cds;Parent=Msa1024350-mRNA-1
chr7_1 CDS 53493664 53494199 53493664 ID=Msa1024350-mRNA-1:cds;Parent=Msa1024350-mRNA-1
Gene Sequence

>Msa1024350

ATGCCCACCGATGGTCGAGATGAACATCATACTAACAGTAGAAGAACCAGAAGACGGTTAGAAACACACAACGAGCTTCAGCGCAGAGGAAATACTCAAGCCCCAGAAACAATTATTGGTCCTGCACCTCGGCGTAATGTTTTACCACGCTCTGTTGTTGCCGATTTTCCACCTAAGGATGCGCGACTCCTCAGGGAATTTTCTGCTCGTCATGCTGGCTTTCTTCTTTCAGAACAAACACATCCCCTTGACATAAGACGTGGAGCTTACGAGTATTTCGCCAACTTCCTCAAGCTCTTGCGATCACACTCTACCTTAGACTTGATGACTACATTAAAATCACATGTTGCTGAAGGACTCGATGTTATTAATATGTATGGCTTCAGAGGTGAATGGCTTGATGACTTGGTTATTCGTCTGAATCCCTCCACTCTTGATATCGCCAAAGAAGAGGTGCGAAAACTGACTAATCAAGAAGCTACTAATTTGAAACTTGTTGGAGAGTTGGAGGAGGAGTATGCAATCTTAACATACAAATTACAAGAATTGAGAAATAAGATTTCCAATGAGAAAGATGATATGGGTTACGTTTCTAATAGGAAGCGGCAAATTATGGAAGAAATAGCAAGCTTAAACGCCCCTTTAAATATTTAG

Protein sequence

>Msa1024350

MPTDGRDEHHTNSRRTRRRLETHNELQRRGNTQAPETIIGPAPRRNVLPRSVVADFPPKDARLLREFSARHAGFLLSEQTHPLDIRRGAYEYFANFLKLLRSHSTLDLMTTLKSHVAEGLDVINMYGFRGEWLDDLVIRLNPSTLDIAKEEVRKLTNQEATNLKLVGELEEEYAILTYKLQELRNKISNEKDDMGYVSNRKRQIMEEIASLNAPLNI*