Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725840 | XP_003613833.1 | 89.896 | 386 | 34 | 1 | 1 | 386 | 1 | 381 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725840 | sp|Q8W1E3|CDF1_ARATH | 44.828 | 290 | 132 | 10 | 109 | 386 | 25 | 298 | 3.98e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725840 | G7KGM5 | 89.896 | 386 | 34 | 1 | 1 | 386 | 1 | 381 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0725840 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0725840 | Msa0845920 | 0.887949 | 9.095512e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725840 | MtrunA17_Chr5g0417601 | 89.896 | 386 | 34 | 1 | 1 | 386 | 1 | 381 | 0.0 | 667 |
| Msa0725840 | MtrunA17_Chr5g0417551 | 63.384 | 396 | 110 | 9 | 1 | 386 | 1 | 371 | 3.88e-157 | 446 |
| Msa0725840 | MtrunA17_Chr5g0417561 | 61.421 | 394 | 113 | 9 | 1 | 386 | 1 | 363 | 2.97e-151 | 431 |
| Msa0725840 | MtrunA17_Chr5g0417571 | 73.770 | 305 | 68 | 4 | 1 | 297 | 1 | 301 | 4.80e-145 | 414 |
| Msa0725840 | MtrunA17_Chr4g0042481 | 42.236 | 483 | 146 | 19 | 7 | 384 | 9 | 463 | 3.32e-92 | 284 |
| Msa0725840 | MtrunA17_Chr7g0217581 | 36.895 | 496 | 185 | 16 | 2 | 384 | 101 | 581 | 3.95e-70 | 230 |
| Msa0725840 | MtrunA17_Chr6g0453321 | 37.055 | 421 | 148 | 13 | 80 | 384 | 74 | 493 | 3.10e-65 | 215 |
| Msa0725840 | MtrunA17_Chr3g0092111 | 36.983 | 411 | 151 | 14 | 69 | 384 | 66 | 463 | 5.84e-62 | 206 |
| Msa0725840 | MtrunA17_Chr8g0355261 | 31.856 | 361 | 143 | 10 | 115 | 386 | 93 | 439 | 9.33e-47 | 165 |
| Msa0725840 | MtrunA17_Chr6g0460731 | 55.140 | 107 | 45 | 1 | 98 | 201 | 51 | 157 | 7.31e-33 | 126 |
| Msa0725840 | MtrunA17_Chr7g0254161 | 29.064 | 406 | 172 | 11 | 78 | 386 | 38 | 424 | 1.07e-32 | 127 |
| Msa0725840 | MtrunA17_Chr6g0460721 | 53.846 | 104 | 45 | 1 | 101 | 201 | 47 | 150 | 8.96e-31 | 120 |
| Msa0725840 | MtrunA17_Chr2g0283811 | 77.966 | 59 | 13 | 0 | 135 | 193 | 42 | 100 | 1.26e-29 | 112 |
| Msa0725840 | MtrunA17_Chr8g0341671 | 66.667 | 63 | 17 | 1 | 133 | 191 | 9 | 71 | 2.67e-24 | 99.8 |
| Msa0725840 | MtrunA17_Chr2g0328021 | 58.571 | 70 | 29 | 0 | 124 | 193 | 46 | 115 | 3.06e-23 | 98.2 |
| Msa0725840 | MtrunA17_Chr4g0010151 | 56.522 | 69 | 30 | 0 | 125 | 193 | 67 | 135 | 7.02e-23 | 98.6 |
| Msa0725840 | MtrunA17_Chr8g0374251 | 68.966 | 58 | 17 | 1 | 142 | 198 | 70 | 127 | 2.03e-22 | 97.1 |
| Msa0725840 | MtrunA17_Chr3g0127201 | 58.209 | 67 | 28 | 0 | 127 | 193 | 14 | 80 | 2.13e-22 | 95.9 |
| Msa0725840 | MtrunA17_Chr8g0374111 | 53.846 | 78 | 26 | 1 | 125 | 192 | 4 | 81 | 3.55e-22 | 94.0 |
| Msa0725840 | MtrunA17_Chr8g0367161 | 52.703 | 74 | 34 | 1 | 122 | 194 | 14 | 87 | 3.91e-22 | 96.3 |
| Msa0725840 | MtrunA17_Chr7g0223311 | 46.078 | 102 | 42 | 3 | 105 | 205 | 54 | 143 | 4.04e-22 | 96.7 |
| Msa0725840 | MtrunA17_Chr3g0126201 | 58.904 | 73 | 28 | 2 | 127 | 197 | 36 | 108 | 7.21e-22 | 95.5 |
| Msa0725840 | MtrunA17_Chr4g0061761 | 69.231 | 52 | 16 | 0 | 139 | 190 | 39 | 90 | 7.65e-22 | 95.1 |
| Msa0725840 | MtrunA17_Chr8g0346551 | 62.712 | 59 | 22 | 0 | 135 | 193 | 19 | 77 | 8.78e-22 | 94.0 |
| Msa0725840 | MtrunA17_Chr2g0308011 | 68.627 | 51 | 16 | 0 | 138 | 188 | 35 | 85 | 1.42e-21 | 92.0 |
| Msa0725840 | MtrunA17_Chr2g0326001 | 60.606 | 66 | 25 | 1 | 129 | 193 | 28 | 93 | 1.59e-21 | 93.6 |
| Msa0725840 | MtrunA17_Chr1g0188851 | 55.072 | 69 | 31 | 0 | 127 | 195 | 30 | 98 | 2.37e-21 | 93.2 |
| Msa0725840 | MtrunA17_Chr4g0031411 | 63.934 | 61 | 21 | 1 | 136 | 195 | 71 | 131 | 2.68e-21 | 93.6 |
| Msa0725840 | MtrunA17_Chr4g0047001 | 71.154 | 52 | 15 | 0 | 142 | 193 | 57 | 108 | 1.18e-20 | 92.4 |
| Msa0725840 | MtrunA17_Chr7g0237921 | 60.656 | 61 | 23 | 1 | 133 | 193 | 70 | 129 | 2.49e-20 | 91.3 |
| Msa0725840 | MtrunA17_Chr4g0030051 | 60.000 | 65 | 25 | 1 | 129 | 192 | 29 | 93 | 3.30e-20 | 89.7 |
| Msa0725840 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 136 | 190 | 39 | 93 | 3.74e-20 | 90.5 |
| Msa0725840 | MtrunA17_Chr1g0177251 | 67.308 | 52 | 17 | 0 | 142 | 193 | 14 | 65 | 5.14e-20 | 89.4 |
| Msa0725840 | MtrunA17_Chr2g0282051 | 68.519 | 54 | 16 | 1 | 140 | 193 | 46 | 98 | 2.13e-19 | 87.4 |
| Msa0725840 | MtrunA17_Chr4g0047761 | 62.264 | 53 | 20 | 0 | 142 | 194 | 74 | 126 | 2.54e-19 | 87.8 |
| Msa0725840 | MtrunA17_Chr2g0282441 | 66.000 | 50 | 17 | 0 | 142 | 191 | 27 | 76 | 5.67e-19 | 87.0 |
| Msa0725840 | MtrunA17_Chr3g0117601 | 62.963 | 54 | 20 | 0 | 137 | 190 | 58 | 111 | 7.34e-19 | 86.7 |
| Msa0725840 | MtrunA17_Chr2g0282511 | 67.347 | 49 | 16 | 0 | 140 | 188 | 45 | 93 | 9.02e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725840 | AT5G62430.1 | 44.828 | 290 | 132 | 10 | 109 | 386 | 25 | 298 | 4.04e-64 | 207 |
| Msa0725840 | AT5G39660.3 | 37.852 | 391 | 158 | 15 | 70 | 384 | 74 | 455 | 8.19e-58 | 195 |
| Msa0725840 | AT5G39660.1 | 37.852 | 391 | 158 | 15 | 70 | 384 | 74 | 455 | 8.19e-58 | 195 |
| Msa0725840 | AT5G39660.2 | 37.852 | 391 | 158 | 15 | 70 | 384 | 74 | 455 | 8.19e-58 | 195 |
| Msa0725840 | AT1G69570.1 | 36.228 | 334 | 148 | 15 | 98 | 384 | 80 | 395 | 1.44e-46 | 164 |
| Msa0725840 | AT1G26790.1 | 35.739 | 291 | 124 | 11 | 135 | 386 | 106 | 372 | 2.15e-39 | 144 |
| Msa0725840 | AT1G29160.1 | 73.913 | 69 | 15 | 1 | 125 | 193 | 50 | 115 | 1.19e-32 | 121 |
| Msa0725840 | AT2G34140.1 | 57.143 | 91 | 27 | 2 | 125 | 206 | 46 | 133 | 9.72e-31 | 115 |
| Msa0725840 | AT3G47500.1 | 63.415 | 82 | 30 | 0 | 122 | 203 | 92 | 173 | 4.75e-30 | 120 |
| Msa0725840 | AT3G47500.1 | 43.030 | 165 | 67 | 7 | 240 | 386 | 293 | 448 | 4.94e-24 | 103 |
| Msa0725840 | AT5G60200.1 | 43.478 | 115 | 45 | 2 | 92 | 203 | 24 | 121 | 3.93e-23 | 97.8 |
| Msa0725840 | AT1G51700.1 | 73.077 | 52 | 14 | 0 | 140 | 191 | 33 | 84 | 4.38e-23 | 95.9 |
| Msa0725840 | AT1G07640.1 | 54.545 | 77 | 29 | 1 | 123 | 199 | 10 | 80 | 4.43e-23 | 98.2 |
| Msa0725840 | AT1G07640.2 | 54.545 | 77 | 29 | 1 | 123 | 199 | 66 | 136 | 5.86e-23 | 99.0 |
| Msa0725840 | AT1G07640.3 | 54.545 | 77 | 29 | 1 | 123 | 199 | 74 | 144 | 6.62e-23 | 99.0 |
| Msa0725840 | AT3G61850.1 | 36.923 | 130 | 78 | 2 | 64 | 193 | 2 | 127 | 1.47e-22 | 97.1 |
| Msa0725840 | AT2G37590.1 | 54.412 | 68 | 31 | 0 | 126 | 193 | 75 | 142 | 1.86e-22 | 97.4 |
| Msa0725840 | AT3G61850.4 | 36.923 | 130 | 78 | 2 | 64 | 193 | 2 | 127 | 2.14e-22 | 97.1 |
| Msa0725840 | AT5G60850.1 | 70.370 | 54 | 16 | 0 | 140 | 193 | 51 | 104 | 2.33e-22 | 96.7 |
| Msa0725840 | AT2G28810.2 | 48.810 | 84 | 40 | 2 | 108 | 191 | 48 | 128 | 3.03e-22 | 96.7 |
| Msa0725840 | AT3G21270.1 | 74.510 | 51 | 13 | 0 | 142 | 192 | 31 | 81 | 3.50e-22 | 94.0 |
| Msa0725840 | AT2G28810.1 | 48.810 | 84 | 40 | 2 | 108 | 191 | 65 | 145 | 4.18e-22 | 96.7 |
| Msa0725840 | AT3G55370.1 | 60.317 | 63 | 24 | 1 | 131 | 193 | 68 | 129 | 1.33e-21 | 94.7 |
| Msa0725840 | AT3G55370.2 | 60.317 | 63 | 24 | 1 | 131 | 193 | 68 | 129 | 1.60e-21 | 95.1 |
| Msa0725840 | AT3G55370.3 | 60.317 | 63 | 24 | 1 | 131 | 193 | 113 | 174 | 1.67e-21 | 95.1 |
| Msa0725840 | AT4G24060.1 | 59.091 | 66 | 27 | 0 | 128 | 193 | 41 | 106 | 2.01e-21 | 94.7 |
| Msa0725840 | AT4G38000.1 | 51.948 | 77 | 36 | 1 | 139 | 214 | 40 | 116 | 2.81e-21 | 92.4 |
| Msa0725840 | AT3G50410.1 | 69.231 | 52 | 16 | 0 | 140 | 191 | 30 | 81 | 3.25e-21 | 92.4 |
| Msa0725840 | AT3G61850.2 | 38.136 | 118 | 70 | 1 | 76 | 193 | 1 | 115 | 4.82e-21 | 92.4 |
| Msa0725840 | AT3G61850.3 | 38.136 | 118 | 70 | 1 | 76 | 193 | 1 | 115 | 4.82e-21 | 92.4 |
| Msa0725840 | AT3G61850.5 | 38.136 | 118 | 70 | 1 | 76 | 193 | 1 | 115 | 6.15e-21 | 92.8 |
| Msa0725840 | AT3G45610.1 | 43.564 | 101 | 55 | 1 | 133 | 231 | 33 | 133 | 7.16e-21 | 91.3 |
| Msa0725840 | AT5G65590.1 | 53.750 | 80 | 29 | 2 | 119 | 193 | 18 | 94 | 7.68e-21 | 92.4 |
| Msa0725840 | AT3G52440.1 | 48.315 | 89 | 45 | 1 | 137 | 224 | 22 | 110 | 1.09e-20 | 90.9 |
| Msa0725840 | AT3G52440.2 | 50.000 | 86 | 42 | 1 | 137 | 221 | 41 | 126 | 1.65e-20 | 90.5 |
| Msa0725840 | AT5G02460.1 | 62.069 | 58 | 22 | 0 | 136 | 193 | 91 | 148 | 2.25e-20 | 92.4 |
| Msa0725840 | AT2G28510.1 | 67.308 | 52 | 17 | 0 | 142 | 193 | 50 | 101 | 4.27e-20 | 90.1 |
| Msa0725840 | AT1G28310.1 | 66.667 | 54 | 18 | 0 | 140 | 193 | 27 | 80 | 4.92e-20 | 90.1 |
| Msa0725840 | AT1G28310.2 | 66.667 | 54 | 18 | 0 | 140 | 193 | 51 | 104 | 6.95e-20 | 90.1 |
| Msa0725840 | AT5G66940.1 | 66.667 | 51 | 17 | 0 | 142 | 192 | 34 | 84 | 9.27e-20 | 87.8 |
| Msa0725840 | AT1G21340.1 | 50.000 | 84 | 37 | 2 | 116 | 198 | 17 | 96 | 1.22e-19 | 88.2 |
| Msa0725840 | AT4G00940.1 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.58e-19 | 88.6 |
| Msa0725840 | AT4G00940.3 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.58e-19 | 88.6 |
| Msa0725840 | AT4G00940.2 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.58e-19 | 88.6 |
| Msa0725840 | AT1G64620.1 | 63.462 | 52 | 19 | 0 | 137 | 188 | 46 | 97 | 1.76e-19 | 89.4 |
| Msa0725840 | AT1G47655.1 | 65.306 | 49 | 17 | 0 | 140 | 188 | 29 | 77 | 3.94e-19 | 85.5 |
| Msa0725840 | AT4G21050.1 | 67.308 | 52 | 17 | 0 | 142 | 193 | 26 | 77 | 8.12e-19 | 84.7 |
| Msa0725840 | AT2G46590.1 | 60.377 | 53 | 21 | 0 | 135 | 187 | 63 | 115 | 4.88e-18 | 85.1 |
| Msa0725840 | AT2G46590.2 | 60.377 | 53 | 21 | 0 | 135 | 187 | 75 | 127 | 5.07e-18 | 85.1 |
| Msa0725840 | AT5G62940.1 | 67.347 | 49 | 16 | 0 | 142 | 190 | 75 | 123 | 5.56e-18 | 85.1 |
| Msa0725840 | AT4G21040.1 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 7.74e-17 | 79.7 |
| Msa0725840 | AT4G21080.1 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 3.31e-16 | 78.2 |
Find 79 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTATTTGCAATTTCATT+AGG | 0.248956 | 5_1:-25748001 | None:intergenic |
| GGTCAAAATTCAACTACATT+AGG | 0.257812 | 5_1:+25747863 | Msa0725840:CDS |
| TTTCATGGGATTTGCATCTA+AGG | 0.299102 | 5_1:+25748063 | Msa0725840:CDS |
| ACCACCATAGTATGCTATAT+TGG | 0.313954 | 5_1:-25747792 | None:intergenic |
| TCATCAATTCTCAGTGTCTT+AGG | 0.335867 | 5_1:-25747977 | None:intergenic |
| AACTATTTGCAATTTCATTA+GGG | 0.355970 | 5_1:-25748000 | None:intergenic |
| ACAATTATGTCCGGTTTCAT+TGG | 0.357374 | 5_1:-25747416 | None:intergenic |
| TTGTTGTTGTTTGTGTTACT+TGG | 0.359928 | 5_1:-25745886 | None:intergenic |
| GTCAAAATTCAACTACATTA+GGG | 0.362039 | 5_1:+25747864 | Msa0725840:CDS |
| TGCCAGAGGTATTGGACTTC+CGG | 0.368367 | 5_1:+25747527 | Msa0725840:CDS |
| TCTTCCTTAGAGTTAGAGTT+TGG | 0.372291 | 5_1:+25746017 | Msa0725840:CDS |
| ACATGATGCAAAGAGATATA+AGG | 0.388068 | 5_1:+25746124 | Msa0725840:CDS |
| AGCATACTATGGTGGTTGTT+TGG | 0.397807 | 5_1:+25747799 | Msa0725840:CDS |
| GGGGAACATGAAGATGAATA+AGG | 0.405221 | 5_1:-25746077 | None:intergenic |
| TTCATGGGATTTGCATCTAA+GGG | 0.409566 | 5_1:+25748064 | Msa0725840:CDS |
| CCACCATAGTATGCTATATT+GGG | 0.409801 | 5_1:-25747791 | None:intergenic |
| TATCCCAATATAGCATACTA+TGG | 0.411753 | 5_1:+25747788 | Msa0725840:CDS |
| AGTACTACTATCTTGACCTT+TGG | 0.413423 | 5_1:+25747623 | Msa0725840:CDS |
| AGAACCAAACTCTAACTCTA+AGG | 0.422367 | 5_1:-25746021 | None:intergenic |
| CAGTTTAGAAGTTTCTGTTT+CGG | 0.422590 | 5_1:-25747345 | None:intergenic |
| TAACTCTAAGGAAGAATCAT+TGG | 0.432927 | 5_1:-25746009 | None:intergenic |
| CTCTTTGCATCATGTTCAGT+TGG | 0.433065 | 5_1:-25746116 | None:intergenic |
| GACACAGGATAACACATTGC+AGG | 0.443245 | 5_1:-25747761 | None:intergenic |
| AAATTGCAAATAGTTCTATA+TGG | 0.445949 | 5_1:+25748008 | Msa0725840:CDS |
| GTCTCTTGTGTTCCATGAGA+GGG | 0.449681 | 5_1:+25748153 | Msa0725840:CDS |
| CATATTTCTCGTGGCTCCTC+CGG | 0.451801 | 5_1:-25747546 | None:intergenic |
| GTTGGAGAATTTACTTCAGA+TGG | 0.453916 | 5_1:-25746098 | None:intergenic |
| GGGTTCTCAACAAGGCTTGA+AGG | 0.457419 | 5_1:-25747308 | None:intergenic |
| AAGGAATCTTCATGAGGAAA+AGG | 0.458317 | 5_1:-25746044 | None:intergenic |
| TATTATTTCTTTCTGATCCA+AGG | 0.479208 | 5_1:-25747940 | None:intergenic |
| CAACACTAGGAATCAAGAAT+GGG | 0.479648 | 5_1:+25748032 | Msa0725840:CDS |
| TGTTCCATGAGAGGGTTTGA+AGG | 0.482746 | 5_1:+25748161 | Msa0725840:CDS |
| TGAATTATTAGTCATCTCTC+AGG | 0.483951 | 5_1:-25745931 | None:intergenic |
| CACACCTTCAAACCCTCTCA+TGG | 0.492200 | 5_1:-25748165 | None:intergenic |
| AGAGAAATCTCCAATGAAAC+CGG | 0.492605 | 5_1:+25747406 | Msa0725840:CDS |
| GGACAGGGAACAATTATGTC+CGG | 0.498365 | 5_1:-25747425 | None:intergenic |
| CTCCGGAAGTCCAATACCTC+TGG | 0.499281 | 5_1:-25747529 | None:intergenic |
| CTTGACAAGAAAGTGAATGT+TGG | 0.504154 | 5_1:+25747677 | Msa0725840:CDS |
| AGAAATATGATTGTAGGTGC+TGG | 0.515721 | 5_1:+25747560 | Msa0725840:CDS |
| GGTCTCTTGTGTTCCATGAG+AGG | 0.519430 | 5_1:+25748152 | Msa0725840:CDS |
| AGAAGTTTCTGTTTCGGACG+AGG | 0.520692 | 5_1:-25747339 | None:intergenic |
| CTAATCCTGTCGCTTTATCA+AGG | 0.521791 | 5_1:+25748131 | Msa0725840:CDS |
| TCAACACTAGGAATCAAGAA+TGG | 0.523718 | 5_1:+25748031 | Msa0725840:CDS |
| TTGGAGAATTTACTTCAGAT+GGG | 0.525790 | 5_1:-25746097 | None:intergenic |
| TTGTGTTGCAGGAAACATCA+TGG | 0.539505 | 5_1:+25747216 | Msa0725840:intron |
| GCCACGAGAAATATGATTGT+AGG | 0.539882 | 5_1:+25747554 | Msa0725840:CDS |
| GTGGTTGTTTGGTACCATCA+TGG | 0.540880 | 5_1:+25747810 | Msa0725840:CDS |
| GAAGTTTCTGTTTCGGACGA+GGG | 0.541471 | 5_1:-25747338 | None:intergenic |
| AACAAACTCAATGCAGCCAA+TGG | 0.545923 | 5_1:+25747593 | Msa0725840:CDS |
| TTAGGGAAACATTCAAGAGA+TGG | 0.556627 | 5_1:+25747881 | Msa0725840:CDS |
| CATATCAGTTCAAGAGGATG+AGG | 0.559879 | 5_1:+25747247 | Msa0725840:CDS |
| AGTAGTACTATGCAATCCAT+TGG | 0.564693 | 5_1:-25747609 | None:intergenic |
| TAGGGAAACATTCAAGAGAT+GGG | 0.572707 | 5_1:+25747882 | Msa0725840:CDS |
| AGAGACCTTGATAAAGCGAC+AGG | 0.575409 | 5_1:-25748136 | None:intergenic |
| TGAATAAGGACTATGATCAA+AGG | 0.577518 | 5_1:-25746063 | None:intergenic |
| AGAACTCATATCAGTTCAAG+AGG | 0.588411 | 5_1:+25747241 | Msa0725840:CDS |
| CATGGGATTTGCATCTAAGG+GGG | 0.590579 | 5_1:+25748066 | Msa0725840:CDS |
| AGTAGAAGAATCTGATCCAA+AGG | 0.598047 | 5_1:-25747639 | None:intergenic |
| AACTCCGAGAAAGAAAACCT+TGG | 0.600186 | 5_1:+25747923 | Msa0725840:CDS |
| TGGAGAATTTACTTCAGATG+GGG | 0.602275 | 5_1:-25746096 | None:intergenic |
| CTGTCCAAGATGCAAAAGCA+TGG | 0.610924 | 5_1:+25747442 | Msa0725840:CDS |
| ACCTACAATCATATTTCTCG+TGG | 0.613151 | 5_1:-25747555 | None:intergenic |
| TCATGGGATTTGCATCTAAG+GGG | 0.617988 | 5_1:+25748065 | Msa0725840:CDS |
| ATAGATTGTACATTCCATGA+TGG | 0.621316 | 5_1:-25747824 | None:intergenic |
| AGTTCTATATGGTCAACACT+AGG | 0.622239 | 5_1:+25748019 | Msa0725840:CDS |
| ACACAGGATAACACATTGCA+GGG | 0.622856 | 5_1:-25747760 | None:intergenic |
| ATTAGCTTGCAAAACTGATG+AGG | 0.636555 | 5_1:-25748113 | None:intergenic |
| CCCAATATAGCATACTATGG+TGG | 0.644675 | 5_1:+25747791 | Msa0725840:CDS |
| ATGGGATTTGCATCTAAGGG+GGG | 0.646627 | 5_1:+25748067 | Msa0725840:CDS |
| ATCCTCTGTAGATTGGAATG+AGG | 0.648122 | 5_1:-25747270 | None:intergenic |
| AACACTAGGAATCAAGAATG+GGG | 0.652094 | 5_1:+25748033 | Msa0725840:CDS |
| ATATTGGGATAGAATGACAC+AGG | 0.661691 | 5_1:-25747776 | None:intergenic |
| TGATCAAAGGAATCTTCATG+AGG | 0.663117 | 5_1:-25746050 | None:intergenic |
| GGGTTCCAAGAAAACTGTGG+AGG | 0.676664 | 5_1:-25747740 | None:intergenic |
| CAGAGGTATTGGACTTCCGG+AGG | 0.686773 | 5_1:+25747530 | Msa0725840:CDS |
| TCTATCTCGACACAATCTTG+CGG | 0.698726 | 5_1:+25747842 | Msa0725840:CDS |
| ACACTAGGAATCAAGAATGG+GGG | 0.702331 | 5_1:+25748034 | Msa0725840:CDS |
| GGCCTCATTCCAATCTACAG+AGG | 0.711504 | 5_1:+25747268 | Msa0725840:CDS |
| GCAGGGTTCCAAGAAAACTG+TGG | 0.717555 | 5_1:-25747743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr5_1:25746507-25746526 | Msa0725840:intron | 10.0% |
| !! | TATTAATTATGATTTAACAA+CGG | - | chr5_1:25746780-25746799 | None:intergenic | 10.0% |
| !! | AATAAATTAAAATATCAAGA+AGG | + | chr5_1:25746959-25746978 | Msa0725840:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr5_1:25746507-25746526 | Msa0725840:intron | 10.0% |
| !! | TATTAATTATGATTTAACAA+CGG | - | chr5_1:25746780-25746799 | None:intergenic | 10.0% |
| !! | AATAAATTAAAATATCAAGA+AGG | + | chr5_1:25746959-25746978 | Msa0725840:intron | 10.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | chr5_1:25746403-25746422 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCAAACAAAAAG+TGG | - | chr5_1:25746637-25746656 | None:intergenic | 15.0% |
| !! | TTTGTTTGAAAAAAATACAA+AGG | + | chr5_1:25746640-25746659 | Msa0725840:intron | 15.0% |
| !! | TTGTTTGAAAAAAATACAAA+GGG | + | chr5_1:25746641-25746660 | Msa0725840:intron | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | chr5_1:25746403-25746422 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCAAACAAAAAG+TGG | - | chr5_1:25746637-25746656 | None:intergenic | 15.0% |
| !! | TTTGTTTGAAAAAAATACAA+AGG | + | chr5_1:25746640-25746659 | Msa0725840:intron | 15.0% |
| !! | TTGTTTGAAAAAAATACAAA+GGG | + | chr5_1:25746641-25746660 | Msa0725840:intron | 15.0% |
| !! | TGTTTGAAAAAAATACAAAG+GGG | + | chr5_1:25746642-25746661 | Msa0725840:intron | 20.0% |
| !! | AAAAACTTTATCTTAATCAG+TGG | + | chr5_1:25746867-25746886 | Msa0725840:intron | 20.0% |
| !! | ATATACAACAGAATATCATA+TGG | - | chr5_1:25746986-25747005 | None:intergenic | 20.0% |
| !!! | ACTTTGTTCATCAATTTTAT+GGG | - | chr5_1:25747375-25747394 | None:intergenic | 20.0% |
| !! | AACTATTTGCAATTTCATTA+GGG | - | chr5_1:25748003-25748022 | None:intergenic | 20.0% |
| !!! | AAATTGCAAATAGTTCTATA+TGG | + | chr5_1:25748008-25748027 | Msa0725840:CDS | 20.0% |
| !! | TGTTTGAAAAAAATACAAAG+GGG | + | chr5_1:25746642-25746661 | Msa0725840:intron | 20.0% |
| !! | AAAAACTTTATCTTAATCAG+TGG | + | chr5_1:25746867-25746886 | Msa0725840:intron | 20.0% |
| !! | ATATACAACAGAATATCATA+TGG | - | chr5_1:25746986-25747005 | None:intergenic | 20.0% |
| !!! | ACTTTGTTCATCAATTTTAT+GGG | - | chr5_1:25747375-25747394 | None:intergenic | 20.0% |
| !! | AACTATTTGCAATTTCATTA+GGG | - | chr5_1:25748003-25748022 | None:intergenic | 20.0% |
| !!! | AAATTGCAAATAGTTCTATA+TGG | + | chr5_1:25748008-25748027 | Msa0725840:CDS | 20.0% |
| !! | AATTCAACCATAAAGCTTTT+TGG | + | chr5_1:25745948-25745967 | Msa0725840:CDS | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_1:25745949-25745968 | Msa0725840:CDS | 25.0% |
| ! | TAAATAGAACCAATATGACA+TGG | - | chr5_1:25746164-25746183 | None:intergenic | 25.0% |
| !!! | GTCATATTGGTTCTATTTAT+TGG | + | chr5_1:25746165-25746184 | Msa0725840:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr5_1:25746344-25746363 | None:intergenic | 25.0% |
| !! | ATGATTTAACAACGGTTTTA+CGG | - | chr5_1:25746772-25746791 | None:intergenic | 25.0% |
| ! | TTGAATGAGTATATGTATCT+GGG | - | chr5_1:25747089-25747108 | None:intergenic | 25.0% |
| ! | ATTGAATGAGTATATGTATC+TGG | - | chr5_1:25747090-25747109 | None:intergenic | 25.0% |
| ! | TGCAGTTCTCAAATTAATAT+CGG | + | chr5_1:25747116-25747135 | Msa0725840:intron | 25.0% |
| ! | ATTGACATTATAAAGCTATG+AGG | - | chr5_1:25747180-25747199 | None:intergenic | 25.0% |
| !! | CACTTTGTTCATCAATTTTA+TGG | - | chr5_1:25747376-25747395 | None:intergenic | 25.0% |
| ! | GTCAAAATTCAACTACATTA+GGG | + | chr5_1:25747864-25747883 | Msa0725840:CDS | 25.0% |
| !! | TATTATTTCTTTCTGATCCA+AGG | - | chr5_1:25747943-25747962 | None:intergenic | 25.0% |
| ! | GAACTATTTGCAATTTCATT+AGG | - | chr5_1:25748004-25748023 | None:intergenic | 25.0% |
| !! | AATTCAACCATAAAGCTTTT+TGG | + | chr5_1:25745948-25745967 | Msa0725840:CDS | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_1:25745949-25745968 | Msa0725840:CDS | 25.0% |
| ! | TAAATAGAACCAATATGACA+TGG | - | chr5_1:25746164-25746183 | None:intergenic | 25.0% |
| !!! | GTCATATTGGTTCTATTTAT+TGG | + | chr5_1:25746165-25746184 | Msa0725840:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr5_1:25746344-25746363 | None:intergenic | 25.0% |
| !! | ATGATTTAACAACGGTTTTA+CGG | - | chr5_1:25746772-25746791 | None:intergenic | 25.0% |
| ! | TTGAATGAGTATATGTATCT+GGG | - | chr5_1:25747089-25747108 | None:intergenic | 25.0% |
| ! | ATTGAATGAGTATATGTATC+TGG | - | chr5_1:25747090-25747109 | None:intergenic | 25.0% |
| ! | TGCAGTTCTCAAATTAATAT+CGG | + | chr5_1:25747116-25747135 | Msa0725840:intron | 25.0% |
| ! | ATTGACATTATAAAGCTATG+AGG | - | chr5_1:25747180-25747199 | None:intergenic | 25.0% |
| !! | CACTTTGTTCATCAATTTTA+TGG | - | chr5_1:25747376-25747395 | None:intergenic | 25.0% |
| ! | GTCAAAATTCAACTACATTA+GGG | + | chr5_1:25747864-25747883 | Msa0725840:CDS | 25.0% |
| !! | TATTATTTCTTTCTGATCCA+AGG | - | chr5_1:25747943-25747962 | None:intergenic | 25.0% |
| ! | GAACTATTTGCAATTTCATT+AGG | - | chr5_1:25748004-25748023 | None:intergenic | 25.0% |
| !! | TTGTTGTTGTTTGTGTTACT+TGG | - | chr5_1:25745889-25745908 | None:intergenic | 30.0% |
| TGAATTATTAGTCATCTCTC+AGG | - | chr5_1:25745934-25745953 | None:intergenic | 30.0% | |
| ! | TAACTCTAAGGAAGAATCAT+TGG | - | chr5_1:25746012-25746031 | None:intergenic | 30.0% |
| TGAATAAGGACTATGATCAA+AGG | - | chr5_1:25746066-25746085 | None:intergenic | 30.0% | |
| TTGGAGAATTTACTTCAGAT+GGG | - | chr5_1:25746100-25746119 | None:intergenic | 30.0% | |
| ACATGATGCAAAGAGATATA+AGG | + | chr5_1:25746124-25746143 | Msa0725840:CDS | 30.0% | |
| ! | ATTGCTTCTAGTTAAGACTT+AGG | + | chr5_1:25746300-25746319 | Msa0725840:intron | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr5_1:25746362-25746381 | None:intergenic | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr5_1:25746565-25746584 | Msa0725840:intron | 30.0% |
| TGAAAAAAATACAAAGGGGT+TGG | + | chr5_1:25746646-25746665 | Msa0725840:intron | 30.0% | |
| !! | TTGGTTTTCATGATGATAGA+TGG | + | chr5_1:25746665-25746684 | Msa0725840:intron | 30.0% |
| TCATTGTTAACGATCTTACA+TGG | + | chr5_1:25746838-25746857 | Msa0725840:intron | 30.0% | |
| ! | TGAATGAACTTTTATCCAGA+AGG | - | chr5_1:25746901-25746920 | None:intergenic | 30.0% |
| AGTTCTCAAATTAATATCGG+TGG | + | chr5_1:25747119-25747138 | Msa0725840:intron | 30.0% | |
| GTTCTCAAATTAATATCGGT+GGG | + | chr5_1:25747120-25747139 | Msa0725840:intron | 30.0% | |
| AATCAGTATAATTGTGTTGC+AGG | + | chr5_1:25747205-25747224 | Msa0725840:intron | 30.0% | |
| ! | ATTTTGAATCCTCTGTAGAT+TGG | - | chr5_1:25747280-25747299 | None:intergenic | 30.0% |
| CAGTTTAGAAGTTTCTGTTT+CGG | - | chr5_1:25747348-25747367 | None:intergenic | 30.0% | |
| TATCCCAATATAGCATACTA+TGG | + | chr5_1:25747788-25747807 | Msa0725840:CDS | 30.0% | |
| ATAGATTGTACATTCCATGA+TGG | - | chr5_1:25747827-25747846 | None:intergenic | 30.0% | |
| GGTCAAAATTCAACTACATT+AGG | + | chr5_1:25747863-25747882 | Msa0725840:CDS | 30.0% | |
| !! | TTGTTGTTGTTTGTGTTACT+TGG | - | chr5_1:25745889-25745908 | None:intergenic | 30.0% |
| TGAATTATTAGTCATCTCTC+AGG | - | chr5_1:25745934-25745953 | None:intergenic | 30.0% | |
| ! | TAACTCTAAGGAAGAATCAT+TGG | - | chr5_1:25746012-25746031 | None:intergenic | 30.0% |
| TGAATAAGGACTATGATCAA+AGG | - | chr5_1:25746066-25746085 | None:intergenic | 30.0% | |
| TTGGAGAATTTACTTCAGAT+GGG | - | chr5_1:25746100-25746119 | None:intergenic | 30.0% | |
| ACATGATGCAAAGAGATATA+AGG | + | chr5_1:25746124-25746143 | Msa0725840:CDS | 30.0% | |
| ! | ATTGCTTCTAGTTAAGACTT+AGG | + | chr5_1:25746300-25746319 | Msa0725840:intron | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr5_1:25746362-25746381 | None:intergenic | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr5_1:25746565-25746584 | Msa0725840:intron | 30.0% |
| TGAAAAAAATACAAAGGGGT+TGG | + | chr5_1:25746646-25746665 | Msa0725840:intron | 30.0% | |
| !! | TTGGTTTTCATGATGATAGA+TGG | + | chr5_1:25746665-25746684 | Msa0725840:intron | 30.0% |
| TCATTGTTAACGATCTTACA+TGG | + | chr5_1:25746838-25746857 | Msa0725840:intron | 30.0% | |
| ! | TGAATGAACTTTTATCCAGA+AGG | - | chr5_1:25746901-25746920 | None:intergenic | 30.0% |
| AGTTCTCAAATTAATATCGG+TGG | + | chr5_1:25747119-25747138 | Msa0725840:intron | 30.0% | |
| GTTCTCAAATTAATATCGGT+GGG | + | chr5_1:25747120-25747139 | Msa0725840:intron | 30.0% | |
| AATCAGTATAATTGTGTTGC+AGG | + | chr5_1:25747205-25747224 | Msa0725840:intron | 30.0% | |
| ! | ATTTTGAATCCTCTGTAGAT+TGG | - | chr5_1:25747280-25747299 | None:intergenic | 30.0% |
| CAGTTTAGAAGTTTCTGTTT+CGG | - | chr5_1:25747348-25747367 | None:intergenic | 30.0% | |
| TATCCCAATATAGCATACTA+TGG | + | chr5_1:25747788-25747807 | Msa0725840:CDS | 30.0% | |
| ATAGATTGTACATTCCATGA+TGG | - | chr5_1:25747827-25747846 | None:intergenic | 30.0% | |
| GGTCAAAATTCAACTACATT+AGG | + | chr5_1:25747863-25747882 | Msa0725840:CDS | 30.0% | |
| TGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_1:25745958-25745977 | None:intergenic | 35.0% | |
| TCTTCCTTAGAGTTAGAGTT+TGG | + | chr5_1:25746017-25746036 | Msa0725840:CDS | 35.0% | |
| AGAACCAAACTCTAACTCTA+AGG | - | chr5_1:25746024-25746043 | None:intergenic | 35.0% | |
| AAGGAATCTTCATGAGGAAA+AGG | - | chr5_1:25746047-25746066 | None:intergenic | 35.0% | |
| TGATCAAAGGAATCTTCATG+AGG | - | chr5_1:25746053-25746072 | None:intergenic | 35.0% | |
| TGGAGAATTTACTTCAGATG+GGG | - | chr5_1:25746099-25746118 | None:intergenic | 35.0% | |
| GTTGGAGAATTTACTTCAGA+TGG | - | chr5_1:25746101-25746120 | None:intergenic | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr5_1:25746569-25746588 | Msa0725840:intron | 35.0% |
| ! | CAAACACGCATTTAAAGTGT+TGG | - | chr5_1:25747053-25747072 | None:intergenic | 35.0% |
| !! | ATGAGGTATTGACATAGACA+CGG | - | chr5_1:25747163-25747182 | None:intergenic | 35.0% |
| AGAACTCATATCAGTTCAAG+AGG | + | chr5_1:25747241-25747260 | Msa0725840:CDS | 35.0% | |
| AGAGAAATCTCCAATGAAAC+CGG | + | chr5_1:25747406-25747425 | Msa0725840:CDS | 35.0% | |
| ACAATTATGTCCGGTTTCAT+TGG | - | chr5_1:25747419-25747438 | None:intergenic | 35.0% | |
| ACCTACAATCATATTTCTCG+TGG | - | chr5_1:25747558-25747577 | None:intergenic | 35.0% | |
| AGAAATATGATTGTAGGTGC+TGG | + | chr5_1:25747560-25747579 | Msa0725840:CDS | 35.0% | |
| AGTAGTACTATGCAATCCAT+TGG | - | chr5_1:25747612-25747631 | None:intergenic | 35.0% | |
| AGTACTACTATCTTGACCTT+TGG | + | chr5_1:25747623-25747642 | Msa0725840:CDS | 35.0% | |
| AGTAGAAGAATCTGATCCAA+AGG | - | chr5_1:25747642-25747661 | None:intergenic | 35.0% | |
| CTTGACAAGAAAGTGAATGT+TGG | + | chr5_1:25747677-25747696 | Msa0725840:CDS | 35.0% | |
| ATATTGGGATAGAATGACAC+AGG | - | chr5_1:25747779-25747798 | None:intergenic | 35.0% | |
| CCACCATAGTATGCTATATT+GGG | - | chr5_1:25747794-25747813 | None:intergenic | 35.0% | |
| ACCACCATAGTATGCTATAT+TGG | - | chr5_1:25747795-25747814 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | + | chr5_1:25747881-25747900 | Msa0725840:CDS | 35.0% | |
| TAGGGAAACATTCAAGAGAT+GGG | + | chr5_1:25747882-25747901 | Msa0725840:CDS | 35.0% | |
| ! | TGATCCAAGGTTTTCTTTCT+CGG | - | chr5_1:25747930-25747949 | None:intergenic | 35.0% |
| TCATCAATTCTCAGTGTCTT+AGG | - | chr5_1:25747980-25747999 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCAACACT+AGG | + | chr5_1:25748019-25748038 | Msa0725840:CDS | 35.0% | |
| TCAACACTAGGAATCAAGAA+TGG | + | chr5_1:25748031-25748050 | Msa0725840:CDS | 35.0% | |
| CAACACTAGGAATCAAGAAT+GGG | + | chr5_1:25748032-25748051 | Msa0725840:CDS | 35.0% | |
| AACACTAGGAATCAAGAATG+GGG | + | chr5_1:25748033-25748052 | Msa0725840:CDS | 35.0% | |
| TTTCATGGGATTTGCATCTA+AGG | + | chr5_1:25748063-25748082 | Msa0725840:CDS | 35.0% | |
| TTCATGGGATTTGCATCTAA+GGG | + | chr5_1:25748064-25748083 | Msa0725840:CDS | 35.0% | |
| !! | ATTAGCTTGCAAAACTGATG+AGG | - | chr5_1:25748116-25748135 | None:intergenic | 35.0% |
| TGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_1:25745958-25745977 | None:intergenic | 35.0% | |
| TCTTCCTTAGAGTTAGAGTT+TGG | + | chr5_1:25746017-25746036 | Msa0725840:CDS | 35.0% | |
| AGAACCAAACTCTAACTCTA+AGG | - | chr5_1:25746024-25746043 | None:intergenic | 35.0% | |
| AAGGAATCTTCATGAGGAAA+AGG | - | chr5_1:25746047-25746066 | None:intergenic | 35.0% | |
| TGATCAAAGGAATCTTCATG+AGG | - | chr5_1:25746053-25746072 | None:intergenic | 35.0% | |
| TGGAGAATTTACTTCAGATG+GGG | - | chr5_1:25746099-25746118 | None:intergenic | 35.0% | |
| GTTGGAGAATTTACTTCAGA+TGG | - | chr5_1:25746101-25746120 | None:intergenic | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr5_1:25746569-25746588 | Msa0725840:intron | 35.0% |
| ! | CAAACACGCATTTAAAGTGT+TGG | - | chr5_1:25747053-25747072 | None:intergenic | 35.0% |
| !! | ATGAGGTATTGACATAGACA+CGG | - | chr5_1:25747163-25747182 | None:intergenic | 35.0% |
| AGAACTCATATCAGTTCAAG+AGG | + | chr5_1:25747241-25747260 | Msa0725840:CDS | 35.0% | |
| AGAGAAATCTCCAATGAAAC+CGG | + | chr5_1:25747406-25747425 | Msa0725840:CDS | 35.0% | |
| ACAATTATGTCCGGTTTCAT+TGG | - | chr5_1:25747419-25747438 | None:intergenic | 35.0% | |
| ACCTACAATCATATTTCTCG+TGG | - | chr5_1:25747558-25747577 | None:intergenic | 35.0% | |
| AGAAATATGATTGTAGGTGC+TGG | + | chr5_1:25747560-25747579 | Msa0725840:CDS | 35.0% | |
| AGTAGTACTATGCAATCCAT+TGG | - | chr5_1:25747612-25747631 | None:intergenic | 35.0% | |
| AGTACTACTATCTTGACCTT+TGG | + | chr5_1:25747623-25747642 | Msa0725840:CDS | 35.0% | |
| AGTAGAAGAATCTGATCCAA+AGG | - | chr5_1:25747642-25747661 | None:intergenic | 35.0% | |
| CTTGACAAGAAAGTGAATGT+TGG | + | chr5_1:25747677-25747696 | Msa0725840:CDS | 35.0% | |
| ATATTGGGATAGAATGACAC+AGG | - | chr5_1:25747779-25747798 | None:intergenic | 35.0% | |
| CCACCATAGTATGCTATATT+GGG | - | chr5_1:25747794-25747813 | None:intergenic | 35.0% | |
| ACCACCATAGTATGCTATAT+TGG | - | chr5_1:25747795-25747814 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | + | chr5_1:25747881-25747900 | Msa0725840:CDS | 35.0% | |
| TAGGGAAACATTCAAGAGAT+GGG | + | chr5_1:25747882-25747901 | Msa0725840:CDS | 35.0% | |
| ! | TGATCCAAGGTTTTCTTTCT+CGG | - | chr5_1:25747930-25747949 | None:intergenic | 35.0% |
| TCATCAATTCTCAGTGTCTT+AGG | - | chr5_1:25747980-25747999 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCAACACT+AGG | + | chr5_1:25748019-25748038 | Msa0725840:CDS | 35.0% | |
| TCAACACTAGGAATCAAGAA+TGG | + | chr5_1:25748031-25748050 | Msa0725840:CDS | 35.0% | |
| CAACACTAGGAATCAAGAAT+GGG | + | chr5_1:25748032-25748051 | Msa0725840:CDS | 35.0% | |
| AACACTAGGAATCAAGAATG+GGG | + | chr5_1:25748033-25748052 | Msa0725840:CDS | 35.0% | |
| TTTCATGGGATTTGCATCTA+AGG | + | chr5_1:25748063-25748082 | Msa0725840:CDS | 35.0% | |
| TTCATGGGATTTGCATCTAA+GGG | + | chr5_1:25748064-25748083 | Msa0725840:CDS | 35.0% | |
| !! | ATTAGCTTGCAAAACTGATG+AGG | - | chr5_1:25748116-25748135 | None:intergenic | 35.0% |
| GGGGAACATGAAGATGAATA+AGG | - | chr5_1:25746080-25746099 | None:intergenic | 40.0% | |
| CTCTTTGCATCATGTTCAGT+TGG | - | chr5_1:25746119-25746138 | None:intergenic | 40.0% | |
| GTTCTTGTGCCATGTCATAT+TGG | + | chr5_1:25746152-25746171 | Msa0725840:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr5_1:25746568-25746587 | None:intergenic | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr5_1:25746538-25746557 | Msa0725840:intron | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | + | chr5_1:25746547-25746566 | Msa0725840:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr5_1:25746568-25746587 | Msa0725840:intron | 40.0% |
| ! | CTTTTATCCAGAAGGACTTC+AGG | - | chr5_1:25746893-25746912 | None:intergenic | 40.0% |
| !! | GTGTTGGTGTTACATAGACA+TGG | - | chr5_1:25747037-25747056 | None:intergenic | 40.0% |
| TATATGTATCTGGGTCGTGT+CGG | - | chr5_1:25747080-25747099 | None:intergenic | 40.0% | |
| !! | TGAGGTATTGACATAGACAC+GGG | - | chr5_1:25747162-25747181 | None:intergenic | 40.0% |
| TTGTGTTGCAGGAAACATCA+TGG | + | chr5_1:25747216-25747235 | Msa0725840:intron | 40.0% | |
| CATATCAGTTCAAGAGGATG+AGG | + | chr5_1:25747247-25747266 | Msa0725840:CDS | 40.0% | |
| ATCCTCTGTAGATTGGAATG+AGG | - | chr5_1:25747273-25747292 | None:intergenic | 40.0% | |
| ! | ATGCTTTTGCATCTTGGACA+GGG | - | chr5_1:25747443-25747462 | None:intergenic | 40.0% |
| GCCACGAGAAATATGATTGT+AGG | + | chr5_1:25747554-25747573 | Msa0725840:CDS | 40.0% | |
| AACAAACTCAATGCAGCCAA+TGG | + | chr5_1:25747593-25747612 | Msa0725840:CDS | 40.0% | |
| ! | GTTTACCTCCACAGTTTTCT+TGG | + | chr5_1:25747735-25747754 | Msa0725840:CDS | 40.0% |
| ACACAGGATAACACATTGCA+GGG | - | chr5_1:25747763-25747782 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+TGG | + | chr5_1:25747791-25747810 | Msa0725840:CDS | 40.0% | |
| AGCATACTATGGTGGTTGTT+TGG | + | chr5_1:25747799-25747818 | Msa0725840:CDS | 40.0% | |
| TCTATCTCGACACAATCTTG+CGG | + | chr5_1:25747842-25747861 | Msa0725840:CDS | 40.0% | |
| ! | AAGGTTTTCTTTCTCGGAGT+TGG | - | chr5_1:25747924-25747943 | None:intergenic | 40.0% |
| AACTCCGAGAAAGAAAACCT+TGG | + | chr5_1:25747923-25747942 | Msa0725840:CDS | 40.0% | |
| ACACTAGGAATCAAGAATGG+GGG | + | chr5_1:25748034-25748053 | Msa0725840:CDS | 40.0% | |
| TCATGGGATTTGCATCTAAG+GGG | + | chr5_1:25748065-25748084 | Msa0725840:CDS | 40.0% | |
| !! | CTAATCCTGTCGCTTTATCA+AGG | + | chr5_1:25748131-25748150 | Msa0725840:CDS | 40.0% |
| GGGGAACATGAAGATGAATA+AGG | - | chr5_1:25746080-25746099 | None:intergenic | 40.0% | |
| CTCTTTGCATCATGTTCAGT+TGG | - | chr5_1:25746119-25746138 | None:intergenic | 40.0% | |
| GTTCTTGTGCCATGTCATAT+TGG | + | chr5_1:25746152-25746171 | Msa0725840:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr5_1:25746568-25746587 | None:intergenic | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr5_1:25746538-25746557 | Msa0725840:intron | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | + | chr5_1:25746547-25746566 | Msa0725840:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr5_1:25746568-25746587 | Msa0725840:intron | 40.0% |
| ! | CTTTTATCCAGAAGGACTTC+AGG | - | chr5_1:25746893-25746912 | None:intergenic | 40.0% |
| !! | GTGTTGGTGTTACATAGACA+TGG | - | chr5_1:25747037-25747056 | None:intergenic | 40.0% |
| TATATGTATCTGGGTCGTGT+CGG | - | chr5_1:25747080-25747099 | None:intergenic | 40.0% | |
| !! | TGAGGTATTGACATAGACAC+GGG | - | chr5_1:25747162-25747181 | None:intergenic | 40.0% |
| TTGTGTTGCAGGAAACATCA+TGG | + | chr5_1:25747216-25747235 | Msa0725840:intron | 40.0% | |
| CATATCAGTTCAAGAGGATG+AGG | + | chr5_1:25747247-25747266 | Msa0725840:CDS | 40.0% | |
| ATCCTCTGTAGATTGGAATG+AGG | - | chr5_1:25747273-25747292 | None:intergenic | 40.0% | |
| ! | ATGCTTTTGCATCTTGGACA+GGG | - | chr5_1:25747443-25747462 | None:intergenic | 40.0% |
| GCCACGAGAAATATGATTGT+AGG | + | chr5_1:25747554-25747573 | Msa0725840:CDS | 40.0% | |
| AACAAACTCAATGCAGCCAA+TGG | + | chr5_1:25747593-25747612 | Msa0725840:CDS | 40.0% | |
| ! | GTTTACCTCCACAGTTTTCT+TGG | + | chr5_1:25747735-25747754 | Msa0725840:CDS | 40.0% |
| ACACAGGATAACACATTGCA+GGG | - | chr5_1:25747763-25747782 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+TGG | + | chr5_1:25747791-25747810 | Msa0725840:CDS | 40.0% | |
| AGCATACTATGGTGGTTGTT+TGG | + | chr5_1:25747799-25747818 | Msa0725840:CDS | 40.0% | |
| TCTATCTCGACACAATCTTG+CGG | + | chr5_1:25747842-25747861 | Msa0725840:CDS | 40.0% | |
| ! | AAGGTTTTCTTTCTCGGAGT+TGG | - | chr5_1:25747924-25747943 | None:intergenic | 40.0% |
| AACTCCGAGAAAGAAAACCT+TGG | + | chr5_1:25747923-25747942 | Msa0725840:CDS | 40.0% | |
| ACACTAGGAATCAAGAATGG+GGG | + | chr5_1:25748034-25748053 | Msa0725840:CDS | 40.0% | |
| TCATGGGATTTGCATCTAAG+GGG | + | chr5_1:25748065-25748084 | Msa0725840:CDS | 40.0% | |
| !! | CTAATCCTGTCGCTTTATCA+AGG | + | chr5_1:25748131-25748150 | Msa0725840:CDS | 40.0% |
| !!! | GAGTTTTCGGGTTCTCAACA+AGG | - | chr5_1:25747319-25747338 | None:intergenic | 45.0% |
| GAAGTTTCTGTTTCGGACGA+GGG | - | chr5_1:25747341-25747360 | None:intergenic | 45.0% | |
| AGAAGTTTCTGTTTCGGACG+AGG | - | chr5_1:25747342-25747361 | None:intergenic | 45.0% | |
| GGACAGGGAACAATTATGTC+CGG | - | chr5_1:25747428-25747447 | None:intergenic | 45.0% | |
| ! | CATGCTTTTGCATCTTGGAC+AGG | - | chr5_1:25747444-25747463 | None:intergenic | 45.0% |
| CTGTCCAAGATGCAAAAGCA+TGG | + | chr5_1:25747442-25747461 | Msa0725840:CDS | 45.0% | |
| ! | GTGTCCATGCTTTTGCATCT+TGG | - | chr5_1:25747449-25747468 | None:intergenic | 45.0% |
| !!! | CAGTTTTTGCAGAAGTGTCG+GGG | - | chr5_1:25747509-25747528 | None:intergenic | 45.0% |
| !!! | GCAGTTTTTGCAGAAGTGTC+GGG | - | chr5_1:25747510-25747529 | None:intergenic | 45.0% |
| !! | GGCAGTTTTTGCAGAAGTGT+CGG | - | chr5_1:25747511-25747530 | None:intergenic | 45.0% |
| ACTTCTGCAAAAACTGCCAG+AGG | + | chr5_1:25747513-25747532 | Msa0725840:CDS | 45.0% | |
| ! | GCAAAAACTGCCAGAGGTAT+TGG | + | chr5_1:25747519-25747538 | Msa0725840:CDS | 45.0% |
| GACACAGGATAACACATTGC+AGG | - | chr5_1:25747764-25747783 | None:intergenic | 45.0% | |
| GTGGTTGTTTGGTACCATCA+TGG | + | chr5_1:25747810-25747829 | Msa0725840:CDS | 45.0% | |
| ! | AATGGGGGAGAGCTTTTCAT+GGG | + | chr5_1:25748049-25748068 | Msa0725840:CDS | 45.0% |
| CATGGGATTTGCATCTAAGG+GGG | + | chr5_1:25748066-25748085 | Msa0725840:CDS | 45.0% | |
| ATGGGATTTGCATCTAAGGG+GGG | + | chr5_1:25748067-25748086 | Msa0725840:CDS | 45.0% | |
| AGAGACCTTGATAAAGCGAC+AGG | - | chr5_1:25748139-25748158 | None:intergenic | 45.0% | |
| GTCTCTTGTGTTCCATGAGA+GGG | + | chr5_1:25748153-25748172 | Msa0725840:CDS | 45.0% | |
| !!! | GAGTTTTCGGGTTCTCAACA+AGG | - | chr5_1:25747319-25747338 | None:intergenic | 45.0% |
| GAAGTTTCTGTTTCGGACGA+GGG | - | chr5_1:25747341-25747360 | None:intergenic | 45.0% | |
| AGAAGTTTCTGTTTCGGACG+AGG | - | chr5_1:25747342-25747361 | None:intergenic | 45.0% | |
| GGACAGGGAACAATTATGTC+CGG | - | chr5_1:25747428-25747447 | None:intergenic | 45.0% | |
| ! | CATGCTTTTGCATCTTGGAC+AGG | - | chr5_1:25747444-25747463 | None:intergenic | 45.0% |
| CTGTCCAAGATGCAAAAGCA+TGG | + | chr5_1:25747442-25747461 | Msa0725840:CDS | 45.0% | |
| ! | GTGTCCATGCTTTTGCATCT+TGG | - | chr5_1:25747449-25747468 | None:intergenic | 45.0% |
| !!! | CAGTTTTTGCAGAAGTGTCG+GGG | - | chr5_1:25747509-25747528 | None:intergenic | 45.0% |
| !!! | GCAGTTTTTGCAGAAGTGTC+GGG | - | chr5_1:25747510-25747529 | None:intergenic | 45.0% |
| !! | GGCAGTTTTTGCAGAAGTGT+CGG | - | chr5_1:25747511-25747530 | None:intergenic | 45.0% |
| ACTTCTGCAAAAACTGCCAG+AGG | + | chr5_1:25747513-25747532 | Msa0725840:CDS | 45.0% | |
| ! | GCAAAAACTGCCAGAGGTAT+TGG | + | chr5_1:25747519-25747538 | Msa0725840:CDS | 45.0% |
| GACACAGGATAACACATTGC+AGG | - | chr5_1:25747764-25747783 | None:intergenic | 45.0% | |
| GTGGTTGTTTGGTACCATCA+TGG | + | chr5_1:25747810-25747829 | Msa0725840:CDS | 45.0% | |
| ! | AATGGGGGAGAGCTTTTCAT+GGG | + | chr5_1:25748049-25748068 | Msa0725840:CDS | 45.0% |
| CATGGGATTTGCATCTAAGG+GGG | + | chr5_1:25748066-25748085 | Msa0725840:CDS | 45.0% | |
| ATGGGATTTGCATCTAAGGG+GGG | + | chr5_1:25748067-25748086 | Msa0725840:CDS | 45.0% | |
| AGAGACCTTGATAAAGCGAC+AGG | - | chr5_1:25748139-25748158 | None:intergenic | 45.0% | |
| GTCTCTTGTGTTCCATGAGA+GGG | + | chr5_1:25748153-25748172 | Msa0725840:CDS | 45.0% | |
| !! | TTTATTATTTATAATTATGT+TGG | + | chr5_1:25746193-25746212 | Msa0725840:intron | 5.0% |
| !! | TTTATTATTTATAATTATGT+TGG | + | chr5_1:25746193-25746212 | Msa0725840:intron | 5.0% |
| GGCCTCATTCCAATCTACAG+AGG | + | chr5_1:25747268-25747287 | Msa0725840:CDS | 50.0% | |
| GGGTTCTCAACAAGGCTTGA+AGG | - | chr5_1:25747311-25747330 | None:intergenic | 50.0% | |
| ! | TTTCGGACGAGGGAGTTTTC+GGG | - | chr5_1:25747331-25747350 | None:intergenic | 50.0% |
| ! | GTTTCGGACGAGGGAGTTTT+CGG | - | chr5_1:25747332-25747351 | None:intergenic | 50.0% |
| !! | TGCCAGAGGTATTGGACTTC+CGG | + | chr5_1:25747527-25747546 | Msa0725840:CDS | 50.0% |
| CATATTTCTCGTGGCTCCTC+CGG | - | chr5_1:25747549-25747568 | None:intergenic | 50.0% | |
| GGGTTCCAAGAAAACTGTGG+AGG | - | chr5_1:25747743-25747762 | None:intergenic | 50.0% | |
| GCAGGGTTCCAAGAAAACTG+TGG | - | chr5_1:25747746-25747765 | None:intergenic | 50.0% | |
| ! | GAATGGGGGAGAGCTTTTCA+TGG | + | chr5_1:25748048-25748067 | Msa0725840:CDS | 50.0% |
| GGTCTCTTGTGTTCCATGAG+AGG | + | chr5_1:25748152-25748171 | Msa0725840:CDS | 50.0% | |
| GGCCTCATTCCAATCTACAG+AGG | + | chr5_1:25747268-25747287 | Msa0725840:CDS | 50.0% | |
| GGGTTCTCAACAAGGCTTGA+AGG | - | chr5_1:25747311-25747330 | None:intergenic | 50.0% | |
| ! | TTTCGGACGAGGGAGTTTTC+GGG | - | chr5_1:25747331-25747350 | None:intergenic | 50.0% |
| ! | GTTTCGGACGAGGGAGTTTT+CGG | - | chr5_1:25747332-25747351 | None:intergenic | 50.0% |
| !! | TGCCAGAGGTATTGGACTTC+CGG | + | chr5_1:25747527-25747546 | Msa0725840:CDS | 50.0% |
| CATATTTCTCGTGGCTCCTC+CGG | - | chr5_1:25747549-25747568 | None:intergenic | 50.0% | |
| GGGTTCCAAGAAAACTGTGG+AGG | - | chr5_1:25747743-25747762 | None:intergenic | 50.0% | |
| GCAGGGTTCCAAGAAAACTG+TGG | - | chr5_1:25747746-25747765 | None:intergenic | 50.0% | |
| ! | GAATGGGGGAGAGCTTTTCA+TGG | + | chr5_1:25748048-25748067 | Msa0725840:CDS | 50.0% |
| GGTCTCTTGTGTTCCATGAG+AGG | + | chr5_1:25748152-25748171 | Msa0725840:CDS | 50.0% | |
| TCAGTGGCCTGAAGTCCTTC+TGG | + | chr5_1:25746883-25746902 | Msa0725840:intron | 55.0% | |
| CTCCGGAAGTCCAATACCTC+TGG | - | chr5_1:25747532-25747551 | None:intergenic | 55.0% | |
| !! | CAGAGGTATTGGACTTCCGG+AGG | + | chr5_1:25747530-25747549 | Msa0725840:CDS | 55.0% |
| TCAGTGGCCTGAAGTCCTTC+TGG | + | chr5_1:25746883-25746902 | Msa0725840:intron | 55.0% | |
| CTCCGGAAGTCCAATACCTC+TGG | - | chr5_1:25747532-25747551 | None:intergenic | 55.0% | |
| !! | CAGAGGTATTGGACTTCCGG+AGG | + | chr5_1:25747530-25747549 | Msa0725840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25745859 | 25748180 | 25745859 | ID=Msa0725840;Name=Msa0725840 |
| chr5_1 | mRNA | 25745859 | 25748180 | 25745859 | ID=Msa0725840-mRNA-1;Parent=Msa0725840;Name=Msa0725840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80|1|0.5|1|1|1|2|0|386 |
| chr5_1 | exon | 25745859 | 25746145 | 25745859 | ID=Msa0725840-mRNA-1:exon:9271;Parent=Msa0725840-mRNA-1 |
| chr5_1 | exon | 25747227 | 25748180 | 25747227 | ID=Msa0725840-mRNA-1:exon:9272;Parent=Msa0725840-mRNA-1 |
| chr5_1 | five_prime_UTR | 25745859 | 25745938 | 25745859 | ID=Msa0725840-mRNA-1:five_prime_utr;Parent=Msa0725840-mRNA-1 |
| chr5_1 | CDS | 25745939 | 25746145 | 25745939 | ID=Msa0725840-mRNA-1:cds;Parent=Msa0725840-mRNA-1 |
| chr5_1 | CDS | 25747227 | 25748180 | 25747227 | ID=Msa0725840-mRNA-1:cds;Parent=Msa0725840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
