Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728330 | XP_013443504.1 | 95.130 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728330 | sp|P05100|3MG1_ECOLI | 38.122 | 181 | 110 | 1 | 111 | 291 | 1 | 179 | 6.37e-47 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728330 | A0A072TIY7 | 95.130 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0728330 | Msa0839190 | 0.826898 | 2.106867e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728330 | MtrunA17_Chr5g0420791 | 95.130 | 308 | 15 | 0 | 1 | 308 | 1 | 308 | 0.0 | 563 |
| Msa0728330 | MtrunA17_Chr8g0366071 | 68.254 | 315 | 93 | 4 | 1 | 308 | 1 | 315 | 1.06e-150 | 425 |
| Msa0728330 | MtrunA17_Chr4g0073991 | 53.403 | 191 | 89 | 0 | 112 | 302 | 148 | 338 | 2.50e-78 | 243 |
| Msa0728330 | MtrunA17_Chr4g0001371 | 53.476 | 187 | 87 | 0 | 112 | 298 | 137 | 323 | 5.62e-78 | 241 |
| Msa0728330 | MtrunA17_Chr2g0309681 | 50.000 | 192 | 94 | 1 | 110 | 301 | 199 | 388 | 2.27e-70 | 223 |
| Msa0728330 | MtrunA17_Chr3g0141411 | 47.594 | 187 | 97 | 1 | 112 | 297 | 128 | 314 | 1.45e-67 | 214 |
| Msa0728330 | MtrunA17_Chr8g0356301 | 45.833 | 192 | 102 | 1 | 110 | 301 | 193 | 382 | 1.06e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728330 | AT1G13635.2 | 57.333 | 300 | 126 | 2 | 11 | 308 | 12 | 311 | 1.94e-118 | 343 |
| Msa0728330 | AT1G13635.1 | 57.333 | 300 | 126 | 2 | 11 | 308 | 12 | 311 | 1.94e-118 | 343 |
| Msa0728330 | AT5G57970.1 | 51.042 | 192 | 94 | 0 | 112 | 303 | 154 | 345 | 4.48e-76 | 236 |
| Msa0728330 | AT5G57970.2 | 51.042 | 192 | 94 | 0 | 112 | 303 | 154 | 345 | 4.48e-76 | 236 |
| Msa0728330 | AT1G75090.1 | 49.231 | 195 | 99 | 0 | 109 | 303 | 116 | 310 | 1.99e-74 | 232 |
| Msa0728330 | AT1G15970.1 | 50.262 | 191 | 95 | 0 | 112 | 302 | 145 | 335 | 9.74e-71 | 223 |
| Msa0728330 | AT1G15970.2 | 50.262 | 191 | 95 | 0 | 112 | 302 | 145 | 335 | 9.74e-71 | 223 |
| Msa0728330 | AT1G80850.1 | 50.259 | 193 | 92 | 2 | 112 | 302 | 134 | 324 | 1.92e-69 | 219 |
| Msa0728330 | AT5G44680.1 | 45.789 | 190 | 101 | 1 | 112 | 301 | 164 | 351 | 1.49e-64 | 207 |
| Msa0728330 | AT3G12710.1 | 41.509 | 212 | 116 | 2 | 93 | 304 | 109 | 312 | 1.28e-62 | 201 |
Find 57 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCGCGGCTTTAGGTATT+TGG | 0.150830 | 5_1:+32889024 | Msa0728330:CDS |
| GACTTCCTTCTCCTCCATTT+TGG | 0.168590 | 5_1:-32888382 | None:intergenic |
| GGTTCAATTTCTTTGATTCT+TGG | 0.223191 | 5_1:-32887315 | None:intergenic |
| TCCTTACATTGTTTCCAAAA+TGG | 0.227659 | 5_1:+32888368 | Msa0728330:CDS |
| TTGCTTATGGCATCTGCTTT+TGG | 0.249904 | 5_1:-32888992 | None:intergenic |
| CTTTAATAAGTCCTTGCTTA+TGG | 0.266645 | 5_1:-32889005 | None:intergenic |
| CTACAGATTAGGAGGGAATA+TGG | 0.275504 | 5_1:+32888881 | Msa0728330:intron |
| ATCATCTTGTTGGTTGTTAT+AGG | 0.295068 | 5_1:+32889095 | Msa0728330:CDS |
| ATTCAAGAGATGTTCCATTA+AGG | 0.327044 | 5_1:+32888966 | Msa0728330:CDS |
| GATCATTCAGTAGCTATATA+TGG | 0.347532 | 5_1:+32888903 | Msa0728330:CDS |
| ACTTATTAAAGCGCGGCTTT+AGG | 0.349074 | 5_1:+32889017 | Msa0728330:CDS |
| AAGTAGGGGAAAATTCTTAA+AGG | 0.360918 | 5_1:-32887163 | None:intergenic |
| AGAATTTCATGACGAGTGTT+GGG | 0.361762 | 5_1:+32887822 | Msa0728330:CDS |
| GTTCGAGCTGCTTGCATTGT+CGG | 0.373218 | 5_1:+32888174 | Msa0728330:CDS |
| TTCGAGCTGCTTGCATTGTC+GGG | 0.378913 | 5_1:+32888175 | Msa0728330:CDS |
| AAGCGCGGCTTTAGGTATTT+GGG | 0.389547 | 5_1:+32889025 | Msa0728330:CDS |
| ACTTACCTTCATCATGCATT+TGG | 0.391328 | 5_1:-32888472 | None:intergenic |
| TTTGCAGAAGAATTTATGTT+TGG | 0.405017 | 5_1:+32889240 | Msa0728330:three_prime_UTR |
| GTGAATTGAAAAGATGCAAC+TGG | 0.419584 | 5_1:+32887590 | Msa0728330:CDS |
| GCATTTACTTTAGACATGCT+TGG | 0.434620 | 5_1:-32887259 | None:intergenic |
| TTGACTATTGATCATCTTGT+TGG | 0.439859 | 5_1:+32889085 | Msa0728330:CDS |
| GGAAAATTCTTAAAGGAGGT+TGG | 0.442602 | 5_1:-32887156 | None:intergenic |
| ATGTCTAAAGTAAATGCAAA+AGG | 0.443146 | 5_1:+32887265 | Msa0728330:CDS |
| CATTTACTTTAGACATGCTT+GGG | 0.444241 | 5_1:-32887258 | None:intergenic |
| GATTGCTGATAGATTACAAC+TGG | 0.448023 | 5_1:+32888197 | Msa0728330:CDS |
| TGATGATGAAAATGAAGATA+TGG | 0.450028 | 5_1:-32887407 | None:intergenic |
| TATCTGTATTTGTTAATCAC+TGG | 0.455747 | 5_1:-32888944 | None:intergenic |
| TAGAATTTCATGACGAGTGT+TGG | 0.462863 | 5_1:+32887821 | Msa0728330:CDS |
| GTTTCCAAGGTCTTTCTGCT+AGG | 0.469373 | 5_1:-32889135 | None:intergenic |
| TATGAAATTGAAATCAAGTA+GGG | 0.472076 | 5_1:-32887178 | None:intergenic |
| CTCAAAAGAGTGTACCCTAT+AGG | 0.496520 | 5_1:+32887358 | Msa0728330:CDS |
| AATCCACACGCGGCCGAGCT+TGG | 0.497436 | 5_1:+32887568 | Msa0728330:CDS |
| TCTTACTTGTCATCATAAGC+TGG | 0.505298 | 5_1:-32887850 | None:intergenic |
| GTGAATTAAATATGTTTCCA+AGG | 0.506100 | 5_1:-32889148 | None:intergenic |
| TGTTTCCAAAATGGAGGAGA+AGG | 0.517813 | 5_1:+32888377 | Msa0728330:CDS |
| TAAACCTAGCAGAAAGACCT+TGG | 0.528766 | 5_1:+32889131 | Msa0728330:CDS |
| TGTCTAAAGTAAATGCAAAA+GGG | 0.542239 | 5_1:+32887266 | Msa0728330:CDS |
| TTATGAAATTGAAATCAAGT+AGG | 0.546756 | 5_1:-32887179 | None:intergenic |
| ATAAAAGAGTAAACAATCAC+TGG | 0.557073 | 5_1:-32889049 | None:intergenic |
| TTACATTGTTTCCAAAATGG+AGG | 0.563021 | 5_1:+32888371 | Msa0728330:CDS |
| TCACCAAGCTCGGCCGCGTG+TGG | 0.564507 | 5_1:-32887571 | None:intergenic |
| CATATTTGATTCAAGCCTTG+AGG | 0.572082 | 5_1:+32889205 | Msa0728330:three_prime_UTR |
| TAGACATGCTTGGGAAGATG+AGG | 0.574746 | 5_1:-32887249 | None:intergenic |
| CAACGCCAAATGCATGATGA+AGG | 0.580568 | 5_1:+32888467 | Msa0728330:CDS |
| GAATTTCATGACGAGTGTTG+GGG | 0.593604 | 5_1:+32887823 | Msa0728330:CDS |
| AAATGCAAAAGGGCATGCAA+TGG | 0.595928 | 5_1:+32887276 | Msa0728330:CDS |
| AAAGTACAGACAAGGCCTCA+AGG | 0.606129 | 5_1:-32889220 | None:intergenic |
| TAGGGGAAAATTCTTAAAGG+AGG | 0.610223 | 5_1:-32887160 | None:intergenic |
| GAGCAGAGTTAAGTGCATAG+TGG | 0.615554 | 5_1:+32888443 | Msa0728330:CDS |
| AGCAAGGACTTATTAAAGCG+CGG | 0.619308 | 5_1:+32889010 | Msa0728330:CDS |
| CTCAGCTAATACAAGTTCTG+TGG | 0.622990 | 5_1:-32888421 | None:intergenic |
| AAAAGCAGATGCCATAAGCA+AGG | 0.629423 | 5_1:+32888994 | Msa0728330:CDS |
| ATGAAATTGAAATCAAGTAG+GGG | 0.632521 | 5_1:-32887177 | None:intergenic |
| GCAACAGCAAAATCCACACG+CGG | 0.644788 | 5_1:+32887558 | Msa0728330:CDS |
| GTATGTTCTCTTCTCTGACG+TGG | 0.663501 | 5_1:-32887517 | None:intergenic |
| TCTTCTGCAAAGTACAGACA+AGG | 0.688336 | 5_1:-32889228 | None:intergenic |
| AACTGGATCACAAAGAACTG+TGG | 0.728528 | 5_1:+32887607 | Msa0728330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCAATCTCATTATAT+TGG | - | chr5_1:32889285-32889304 | None:intergenic | 15.0% |
| !!! | TATTTTCAATCTCATTATAT+TGG | - | chr5_1:32889285-32889304 | None:intergenic | 15.0% |
| !! | TATGAAATTGAAATCAAGTA+GGG | - | chr5_1:32887181-32887200 | None:intergenic | 20.0% |
| !! | TTATGAAATTGAAATCAAGT+AGG | - | chr5_1:32887182-32887201 | None:intergenic | 20.0% |
| !!! | AACTTTTTTGTAATCCTATA+GGG | - | chr5_1:32887375-32887394 | None:intergenic | 20.0% |
| !! | ATTATATTTATGCAACAGAA+AGG | - | chr5_1:32887668-32887687 | None:intergenic | 20.0% |
| !! | AAATTAAGTCAACAAAAATG+TGG | - | chr5_1:32888526-32888545 | None:intergenic | 20.0% |
| !!! | TTTTGTTGACTTAATTTCTT+TGG | + | chr5_1:32888529-32888548 | Msa0728330:intron | 20.0% |
| !! | AATGATAACAAAGATAACAA+CGG | - | chr5_1:32888563-32888582 | None:intergenic | 20.0% |
| !! | AGAAAATAAATCGTCAATAA+GGG | - | chr5_1:32888857-32888876 | None:intergenic | 20.0% |
| !! | AAGAAAATAAATCGTCAATA+AGG | - | chr5_1:32888858-32888877 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTTCTACAGATT+AGG | + | chr5_1:32888870-32888889 | Msa0728330:intron | 20.0% |
| !! | TATGAAATTGAAATCAAGTA+GGG | - | chr5_1:32887181-32887200 | None:intergenic | 20.0% |
| !! | TTATGAAATTGAAATCAAGT+AGG | - | chr5_1:32887182-32887201 | None:intergenic | 20.0% |
| !!! | AACTTTTTTGTAATCCTATA+GGG | - | chr5_1:32887375-32887394 | None:intergenic | 20.0% |
| !! | ATTATATTTATGCAACAGAA+AGG | - | chr5_1:32887668-32887687 | None:intergenic | 20.0% |
| !! | AAATTAAGTCAACAAAAATG+TGG | - | chr5_1:32888526-32888545 | None:intergenic | 20.0% |
| !!! | TTTTGTTGACTTAATTTCTT+TGG | + | chr5_1:32888529-32888548 | Msa0728330:intron | 20.0% |
| !! | AATGATAACAAAGATAACAA+CGG | - | chr5_1:32888563-32888582 | None:intergenic | 20.0% |
| !! | AGAAAATAAATCGTCAATAA+GGG | - | chr5_1:32888857-32888876 | None:intergenic | 20.0% |
| !! | AAGAAAATAAATCGTCAATA+AGG | - | chr5_1:32888858-32888877 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTTCTACAGATT+AGG | + | chr5_1:32888870-32888889 | Msa0728330:intron | 20.0% |
| ! | ATGAAATTGAAATCAAGTAG+GGG | - | chr5_1:32887180-32887199 | None:intergenic | 25.0% |
| !!! | CAAGTTGAATGATTTTGTAT+GGG | - | chr5_1:32887209-32887228 | None:intergenic | 25.0% |
| !!! | TCAAGTTGAATGATTTTGTA+TGG | - | chr5_1:32887210-32887229 | None:intergenic | 25.0% |
| !! | ATGTCTAAAGTAAATGCAAA+AGG | + | chr5_1:32887265-32887284 | Msa0728330:CDS | 25.0% |
| !! | TGTCTAAAGTAAATGCAAAA+GGG | + | chr5_1:32887266-32887285 | Msa0728330:CDS | 25.0% |
| !!! | GAACTTTTTTGTAATCCTAT+AGG | - | chr5_1:32887376-32887395 | None:intergenic | 25.0% |
| !! | TGATGATGAAAATGAAGATA+TGG | - | chr5_1:32887410-32887429 | None:intergenic | 25.0% |
| ! | CTTCTTATTGTAATTTCTCT+TGG | - | chr5_1:32887761-32887780 | None:intergenic | 25.0% |
| ! | AGAAGTAAGAAATGATAAAG+AGG | + | chr5_1:32887776-32887795 | Msa0728330:intron | 25.0% |
| !!! | ATGTTGTTTTTGAAGGAAAA+AGG | - | chr5_1:32887901-32887920 | None:intergenic | 25.0% |
| !!! | CAAATCAATGTTGTTTTTGA+AGG | - | chr5_1:32887908-32887927 | None:intergenic | 25.0% |
| !!! | GACGGTTCATATTTTAAATT+CGG | + | chr5_1:32887977-32887996 | Msa0728330:intron | 25.0% |
| !! | GACAGAAATTCTAAAAAGAA+AGG | + | chr5_1:32888219-32888238 | Msa0728330:CDS | 25.0% |
| ! | TAAAAAGAAAGGAAGTTCTA+AGG | + | chr5_1:32888230-32888249 | Msa0728330:CDS | 25.0% |
| !! | AAACAATGACAACAATCTTT+TGG | - | chr5_1:32888696-32888715 | None:intergenic | 25.0% |
| ! | GTGATAGAAAGAATATTCAA+GGG | - | chr5_1:32888743-32888762 | None:intergenic | 25.0% |
| ! | TGTGATAGAAAGAATATTCA+AGG | - | chr5_1:32888744-32888763 | None:intergenic | 25.0% |
| !! | TATCTGTATTTGTTAATCAC+TGG | - | chr5_1:32888947-32888966 | None:intergenic | 25.0% |
| ! | ATAAAAGAGTAAACAATCAC+TGG | - | chr5_1:32889052-32889071 | None:intergenic | 25.0% |
| ! | GTGAATTAAATATGTTTCCA+AGG | - | chr5_1:32889151-32889170 | None:intergenic | 25.0% |
| ! | TTTGCAGAAGAATTTATGTT+TGG | + | chr5_1:32889240-32889259 | Msa0728330:three_prime_UTR | 25.0% |
| ! | ATGAAATTGAAATCAAGTAG+GGG | - | chr5_1:32887180-32887199 | None:intergenic | 25.0% |
| !!! | CAAGTTGAATGATTTTGTAT+GGG | - | chr5_1:32887209-32887228 | None:intergenic | 25.0% |
| !!! | TCAAGTTGAATGATTTTGTA+TGG | - | chr5_1:32887210-32887229 | None:intergenic | 25.0% |
| !! | ATGTCTAAAGTAAATGCAAA+AGG | + | chr5_1:32887265-32887284 | Msa0728330:CDS | 25.0% |
| !! | TGTCTAAAGTAAATGCAAAA+GGG | + | chr5_1:32887266-32887285 | Msa0728330:CDS | 25.0% |
| !!! | GAACTTTTTTGTAATCCTAT+AGG | - | chr5_1:32887376-32887395 | None:intergenic | 25.0% |
| !! | TGATGATGAAAATGAAGATA+TGG | - | chr5_1:32887410-32887429 | None:intergenic | 25.0% |
| ! | CTTCTTATTGTAATTTCTCT+TGG | - | chr5_1:32887761-32887780 | None:intergenic | 25.0% |
| ! | AGAAGTAAGAAATGATAAAG+AGG | + | chr5_1:32887776-32887795 | Msa0728330:intron | 25.0% |
| !!! | ATGTTGTTTTTGAAGGAAAA+AGG | - | chr5_1:32887901-32887920 | None:intergenic | 25.0% |
| !!! | CAAATCAATGTTGTTTTTGA+AGG | - | chr5_1:32887908-32887927 | None:intergenic | 25.0% |
| !!! | GACGGTTCATATTTTAAATT+CGG | + | chr5_1:32887977-32887996 | Msa0728330:intron | 25.0% |
| !! | GACAGAAATTCTAAAAAGAA+AGG | + | chr5_1:32888219-32888238 | Msa0728330:CDS | 25.0% |
| ! | TAAAAAGAAAGGAAGTTCTA+AGG | + | chr5_1:32888230-32888249 | Msa0728330:CDS | 25.0% |
| !! | AAACAATGACAACAATCTTT+TGG | - | chr5_1:32888696-32888715 | None:intergenic | 25.0% |
| ! | GTGATAGAAAGAATATTCAA+GGG | - | chr5_1:32888743-32888762 | None:intergenic | 25.0% |
| ! | TGTGATAGAAAGAATATTCA+AGG | - | chr5_1:32888744-32888763 | None:intergenic | 25.0% |
| !! | TATCTGTATTTGTTAATCAC+TGG | - | chr5_1:32888947-32888966 | None:intergenic | 25.0% |
| ! | ATAAAAGAGTAAACAATCAC+TGG | - | chr5_1:32889052-32889071 | None:intergenic | 25.0% |
| ! | GTGAATTAAATATGTTTCCA+AGG | - | chr5_1:32889151-32889170 | None:intergenic | 25.0% |
| ! | TTTGCAGAAGAATTTATGTT+TGG | + | chr5_1:32889240-32889259 | Msa0728330:three_prime_UTR | 25.0% |
| AAGTAGGGGAAAATTCTTAA+AGG | - | chr5_1:32887166-32887185 | None:intergenic | 30.0% | |
| ! | TTGAATGATTTTGTATGGGT+TGG | - | chr5_1:32887205-32887224 | None:intergenic | 30.0% |
| CATTTACTTTAGACATGCTT+GGG | - | chr5_1:32887261-32887280 | None:intergenic | 30.0% | |
| GGTTCAATTTCTTTGATTCT+TGG | - | chr5_1:32887318-32887337 | None:intergenic | 30.0% | |
| GGTGTTTGTGGAAAAATATT+TGG | - | chr5_1:32887339-32887358 | None:intergenic | 30.0% | |
| TCTCTTGGTGAAAATGTTAT+TGG | - | chr5_1:32887746-32887765 | None:intergenic | 30.0% | |
| ACAGTTGGATAAAAATGAGA+CGG | + | chr5_1:32887959-32887978 | Msa0728330:intron | 30.0% | |
| GAAATTACTCTATAGTGACT+TGG | + | chr5_1:32888065-32888084 | Msa0728330:intron | 30.0% | |
| !! | GTTCAAGAAATTTAGCTTGT+TGG | - | chr5_1:32888138-32888157 | None:intergenic | 30.0% |
| TCCTTACATTGTTTCCAAAA+TGG | + | chr5_1:32888368-32888387 | Msa0728330:CDS | 30.0% | |
| !! | TCCATTTTGGAAACAATGTA+AGG | - | chr5_1:32888372-32888391 | None:intergenic | 30.0% |
| TTACATTGTTTCCAAAATGG+AGG | + | chr5_1:32888371-32888390 | Msa0728330:CDS | 30.0% | |
| AAGAATATTCAAGGGAGATT+AGG | - | chr5_1:32888735-32888754 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCTACAGATTAGG+AGG | + | chr5_1:32888873-32888892 | Msa0728330:intron | 30.0% |
| ! | TCTTTTTCTACAGATTAGGA+GGG | + | chr5_1:32888874-32888893 | Msa0728330:intron | 30.0% |
| GATCATTCAGTAGCTATATA+TGG | + | chr5_1:32888903-32888922 | Msa0728330:CDS | 30.0% | |
| ATTCAAGAGATGTTCCATTA+AGG | + | chr5_1:32888966-32888985 | Msa0728330:CDS | 30.0% | |
| CTTTAATAAGTCCTTGCTTA+TGG | - | chr5_1:32889008-32889027 | None:intergenic | 30.0% | |
| TTGACTATTGATCATCTTGT+TGG | + | chr5_1:32889085-32889104 | Msa0728330:CDS | 30.0% | |
| ! | ATCATCTTGTTGGTTGTTAT+AGG | + | chr5_1:32889095-32889114 | Msa0728330:CDS | 30.0% |
| AAGTAGGGGAAAATTCTTAA+AGG | - | chr5_1:32887166-32887185 | None:intergenic | 30.0% | |
| ! | TTGAATGATTTTGTATGGGT+TGG | - | chr5_1:32887205-32887224 | None:intergenic | 30.0% |
| CATTTACTTTAGACATGCTT+GGG | - | chr5_1:32887261-32887280 | None:intergenic | 30.0% | |
| GGTTCAATTTCTTTGATTCT+TGG | - | chr5_1:32887318-32887337 | None:intergenic | 30.0% | |
| GGTGTTTGTGGAAAAATATT+TGG | - | chr5_1:32887339-32887358 | None:intergenic | 30.0% | |
| TCTCTTGGTGAAAATGTTAT+TGG | - | chr5_1:32887746-32887765 | None:intergenic | 30.0% | |
| ACAGTTGGATAAAAATGAGA+CGG | + | chr5_1:32887959-32887978 | Msa0728330:intron | 30.0% | |
| GAAATTACTCTATAGTGACT+TGG | + | chr5_1:32888065-32888084 | Msa0728330:intron | 30.0% | |
| !! | GTTCAAGAAATTTAGCTTGT+TGG | - | chr5_1:32888138-32888157 | None:intergenic | 30.0% |
| TCCTTACATTGTTTCCAAAA+TGG | + | chr5_1:32888368-32888387 | Msa0728330:CDS | 30.0% | |
| !! | TCCATTTTGGAAACAATGTA+AGG | - | chr5_1:32888372-32888391 | None:intergenic | 30.0% |
| TTACATTGTTTCCAAAATGG+AGG | + | chr5_1:32888371-32888390 | Msa0728330:CDS | 30.0% | |
| AAGAATATTCAAGGGAGATT+AGG | - | chr5_1:32888735-32888754 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCTACAGATTAGG+AGG | + | chr5_1:32888873-32888892 | Msa0728330:intron | 30.0% |
| ! | TCTTTTTCTACAGATTAGGA+GGG | + | chr5_1:32888874-32888893 | Msa0728330:intron | 30.0% |
| GATCATTCAGTAGCTATATA+TGG | + | chr5_1:32888903-32888922 | Msa0728330:CDS | 30.0% | |
| ATTCAAGAGATGTTCCATTA+AGG | + | chr5_1:32888966-32888985 | Msa0728330:CDS | 30.0% | |
| CTTTAATAAGTCCTTGCTTA+TGG | - | chr5_1:32889008-32889027 | None:intergenic | 30.0% | |
| TTGACTATTGATCATCTTGT+TGG | + | chr5_1:32889085-32889104 | Msa0728330:CDS | 30.0% | |
| ! | ATCATCTTGTTGGTTGTTAT+AGG | + | chr5_1:32889095-32889114 | Msa0728330:CDS | 30.0% |
| GGAAAATTCTTAAAGGAGGT+TGG | - | chr5_1:32887159-32887178 | None:intergenic | 35.0% | |
| TAGGGGAAAATTCTTAAAGG+AGG | - | chr5_1:32887163-32887182 | None:intergenic | 35.0% | |
| GCATTTACTTTAGACATGCT+TGG | - | chr5_1:32887262-32887281 | None:intergenic | 35.0% | |
| ! | TCTTTTCAATTCACCAAGCT+CGG | - | chr5_1:32887584-32887603 | None:intergenic | 35.0% |
| GTGAATTGAAAAGATGCAAC+TGG | + | chr5_1:32887590-32887609 | Msa0728330:CDS | 35.0% | |
| !! | AAAGAGGTATTGTGCAGATA+AGG | + | chr5_1:32887792-32887811 | Msa0728330:intron | 35.0% |
| TAGAATTTCATGACGAGTGT+TGG | + | chr5_1:32887821-32887840 | Msa0728330:CDS | 35.0% | |
| AGAATTTCATGACGAGTGTT+GGG | + | chr5_1:32887822-32887841 | Msa0728330:CDS | 35.0% | |
| TCTTACTTGTCATCATAAGC+TGG | - | chr5_1:32887853-32887872 | None:intergenic | 35.0% | |
| GTAATTTCTATCAGAGCTGT+TGG | - | chr5_1:32888053-32888072 | None:intergenic | 35.0% | |
| !!! | TAGTGACTTGGTATTTTGAC+CGG | + | chr5_1:32888077-32888096 | Msa0728330:intron | 35.0% |
| TGCATACGAACATATGGAAA+TGG | - | chr5_1:32888111-32888130 | None:intergenic | 35.0% | |
| GGAAAATGCATACGAACATA+TGG | - | chr5_1:32888117-32888136 | None:intergenic | 35.0% | |
| GATTGCTGATAGATTACAAC+TGG | + | chr5_1:32888197-32888216 | Msa0728330:CDS | 35.0% | |
| ACTTACCTTCATCATGCATT+TGG | - | chr5_1:32888475-32888494 | None:intergenic | 35.0% | |
| CATATTTGATTCAAGCCTTG+AGG | + | chr5_1:32889205-32889224 | Msa0728330:three_prime_UTR | 35.0% | |
| GGAAAATTCTTAAAGGAGGT+TGG | - | chr5_1:32887159-32887178 | None:intergenic | 35.0% | |
| TAGGGGAAAATTCTTAAAGG+AGG | - | chr5_1:32887163-32887182 | None:intergenic | 35.0% | |
| GCATTTACTTTAGACATGCT+TGG | - | chr5_1:32887262-32887281 | None:intergenic | 35.0% | |
| ! | TCTTTTCAATTCACCAAGCT+CGG | - | chr5_1:32887584-32887603 | None:intergenic | 35.0% |
| GTGAATTGAAAAGATGCAAC+TGG | + | chr5_1:32887590-32887609 | Msa0728330:CDS | 35.0% | |
| !! | AAAGAGGTATTGTGCAGATA+AGG | + | chr5_1:32887792-32887811 | Msa0728330:intron | 35.0% |
| TAGAATTTCATGACGAGTGT+TGG | + | chr5_1:32887821-32887840 | Msa0728330:CDS | 35.0% | |
| AGAATTTCATGACGAGTGTT+GGG | + | chr5_1:32887822-32887841 | Msa0728330:CDS | 35.0% | |
| TCTTACTTGTCATCATAAGC+TGG | - | chr5_1:32887853-32887872 | None:intergenic | 35.0% | |
| GTAATTTCTATCAGAGCTGT+TGG | - | chr5_1:32888053-32888072 | None:intergenic | 35.0% | |
| !!! | TAGTGACTTGGTATTTTGAC+CGG | + | chr5_1:32888077-32888096 | Msa0728330:intron | 35.0% |
| TGCATACGAACATATGGAAA+TGG | - | chr5_1:32888111-32888130 | None:intergenic | 35.0% | |
| GGAAAATGCATACGAACATA+TGG | - | chr5_1:32888117-32888136 | None:intergenic | 35.0% | |
| GATTGCTGATAGATTACAAC+TGG | + | chr5_1:32888197-32888216 | Msa0728330:CDS | 35.0% | |
| ACTTACCTTCATCATGCATT+TGG | - | chr5_1:32888475-32888494 | None:intergenic | 35.0% | |
| CATATTTGATTCAAGCCTTG+AGG | + | chr5_1:32889205-32889224 | Msa0728330:three_prime_UTR | 35.0% | |
| ! | AAATGCAAAAGGGCATGCAA+TGG | + | chr5_1:32887276-32887295 | Msa0728330:CDS | 40.0% |
| !!! | ACACTCTTTTGAGGTGTTTG+TGG | - | chr5_1:32887351-32887370 | None:intergenic | 40.0% |
| ! | CTATAGGGTACACTCTTTTG+AGG | - | chr5_1:32887360-32887379 | None:intergenic | 40.0% |
| ! | CTCAAAAGAGTGTACCCTAT+AGG | + | chr5_1:32887358-32887377 | Msa0728330:CDS | 40.0% |
| AACTGGATCACAAAGAACTG+TGG | + | chr5_1:32887607-32887626 | Msa0728330:CDS | 40.0% | |
| ! | GAATTTCATGACGAGTGTTG+GGG | + | chr5_1:32887823-32887842 | Msa0728330:CDS | 40.0% |
| AGTCAATATGTCAGCACAGT+TGG | + | chr5_1:32887944-32887963 | Msa0728330:intron | 40.0% | |
| !!! | ACTTGGTATTTTGACCGGAA+CGG | + | chr5_1:32888082-32888101 | Msa0728330:intron | 40.0% |
| ! | TATGGAAATGGATTCCGTTC+CGG | - | chr5_1:32888099-32888118 | None:intergenic | 40.0% |
| ! | TGATGCAGACAAGTTTTTGC+TGG | + | chr5_1:32888339-32888358 | Msa0728330:intron | 40.0% |
| TGTTTCCAAAATGGAGGAGA+AGG | + | chr5_1:32888377-32888396 | Msa0728330:CDS | 40.0% | |
| CTCAGCTAATACAAGTTCTG+TGG | - | chr5_1:32888424-32888443 | None:intergenic | 40.0% | |
| CTACAGATTAGGAGGGAATA+TGG | + | chr5_1:32888881-32888900 | Msa0728330:intron | 40.0% | |
| !!! | TCTGCTTTTGGTGTCCTTAA+TGG | - | chr5_1:32888983-32889002 | None:intergenic | 40.0% |
| ! | TTGCTTATGGCATCTGCTTT+TGG | - | chr5_1:32888995-32889014 | None:intergenic | 40.0% |
| AAAAGCAGATGCCATAAGCA+AGG | + | chr5_1:32888994-32889013 | Msa0728330:CDS | 40.0% | |
| AGCAAGGACTTATTAAAGCG+CGG | + | chr5_1:32889010-32889029 | Msa0728330:CDS | 40.0% | |
| ACTTATTAAAGCGCGGCTTT+AGG | + | chr5_1:32889017-32889036 | Msa0728330:CDS | 40.0% | |
| ! | TACTCTTTTATGCAAGCTGC+AGG | + | chr5_1:32889061-32889080 | Msa0728330:CDS | 40.0% |
| TAAACCTAGCAGAAAGACCT+TGG | + | chr5_1:32889131-32889150 | Msa0728330:CDS | 40.0% | |
| TCTTCTGCAAAGTACAGACA+AGG | - | chr5_1:32889231-32889250 | None:intergenic | 40.0% | |
| ! | AAATGCAAAAGGGCATGCAA+TGG | + | chr5_1:32887276-32887295 | Msa0728330:CDS | 40.0% |
| !!! | ACACTCTTTTGAGGTGTTTG+TGG | - | chr5_1:32887351-32887370 | None:intergenic | 40.0% |
| ! | CTATAGGGTACACTCTTTTG+AGG | - | chr5_1:32887360-32887379 | None:intergenic | 40.0% |
| ! | CTCAAAAGAGTGTACCCTAT+AGG | + | chr5_1:32887358-32887377 | Msa0728330:CDS | 40.0% |
| AACTGGATCACAAAGAACTG+TGG | + | chr5_1:32887607-32887626 | Msa0728330:CDS | 40.0% | |
| ! | GAATTTCATGACGAGTGTTG+GGG | + | chr5_1:32887823-32887842 | Msa0728330:CDS | 40.0% |
| AGTCAATATGTCAGCACAGT+TGG | + | chr5_1:32887944-32887963 | Msa0728330:intron | 40.0% | |
| !!! | ACTTGGTATTTTGACCGGAA+CGG | + | chr5_1:32888082-32888101 | Msa0728330:intron | 40.0% |
| ! | TATGGAAATGGATTCCGTTC+CGG | - | chr5_1:32888099-32888118 | None:intergenic | 40.0% |
| ! | TGATGCAGACAAGTTTTTGC+TGG | + | chr5_1:32888339-32888358 | Msa0728330:intron | 40.0% |
| TGTTTCCAAAATGGAGGAGA+AGG | + | chr5_1:32888377-32888396 | Msa0728330:CDS | 40.0% | |
| CTCAGCTAATACAAGTTCTG+TGG | - | chr5_1:32888424-32888443 | None:intergenic | 40.0% | |
| CTACAGATTAGGAGGGAATA+TGG | + | chr5_1:32888881-32888900 | Msa0728330:intron | 40.0% | |
| !!! | TCTGCTTTTGGTGTCCTTAA+TGG | - | chr5_1:32888983-32889002 | None:intergenic | 40.0% |
| ! | TTGCTTATGGCATCTGCTTT+TGG | - | chr5_1:32888995-32889014 | None:intergenic | 40.0% |
| AAAAGCAGATGCCATAAGCA+AGG | + | chr5_1:32888994-32889013 | Msa0728330:CDS | 40.0% | |
| AGCAAGGACTTATTAAAGCG+CGG | + | chr5_1:32889010-32889029 | Msa0728330:CDS | 40.0% | |
| ACTTATTAAAGCGCGGCTTT+AGG | + | chr5_1:32889017-32889036 | Msa0728330:CDS | 40.0% | |
| ! | TACTCTTTTATGCAAGCTGC+AGG | + | chr5_1:32889061-32889080 | Msa0728330:CDS | 40.0% |
| TAAACCTAGCAGAAAGACCT+TGG | + | chr5_1:32889131-32889150 | Msa0728330:CDS | 40.0% | |
| TCTTCTGCAAAGTACAGACA+AGG | - | chr5_1:32889231-32889250 | None:intergenic | 40.0% | |
| TAGACATGCTTGGGAAGATG+AGG | - | chr5_1:32887252-32887271 | None:intergenic | 45.0% | |
| GTATGTTCTCTTCTCTGACG+TGG | - | chr5_1:32887520-32887539 | None:intergenic | 45.0% | |
| ! | GACTTCCTTCTCCTCCATTT+TGG | - | chr5_1:32888385-32888404 | None:intergenic | 45.0% |
| GAGCAGAGTTAAGTGCATAG+TGG | + | chr5_1:32888443-32888462 | Msa0728330:CDS | 45.0% | |
| CAACGCCAAATGCATGATGA+AGG | + | chr5_1:32888467-32888486 | Msa0728330:CDS | 45.0% | |
| !! | AAAGCGCGGCTTTAGGTATT+TGG | + | chr5_1:32889024-32889043 | Msa0728330:CDS | 45.0% |
| !! | AAGCGCGGCTTTAGGTATTT+GGG | + | chr5_1:32889025-32889044 | Msa0728330:CDS | 45.0% |
| GTTTCCAAGGTCTTTCTGCT+AGG | - | chr5_1:32889138-32889157 | None:intergenic | 45.0% | |
| AAAGTACAGACAAGGCCTCA+AGG | - | chr5_1:32889223-32889242 | None:intergenic | 45.0% | |
| TAGACATGCTTGGGAAGATG+AGG | - | chr5_1:32887252-32887271 | None:intergenic | 45.0% | |
| GTATGTTCTCTTCTCTGACG+TGG | - | chr5_1:32887520-32887539 | None:intergenic | 45.0% | |
| ! | GACTTCCTTCTCCTCCATTT+TGG | - | chr5_1:32888385-32888404 | None:intergenic | 45.0% |
| GAGCAGAGTTAAGTGCATAG+TGG | + | chr5_1:32888443-32888462 | Msa0728330:CDS | 45.0% | |
| CAACGCCAAATGCATGATGA+AGG | + | chr5_1:32888467-32888486 | Msa0728330:CDS | 45.0% | |
| !! | AAAGCGCGGCTTTAGGTATT+TGG | + | chr5_1:32889024-32889043 | Msa0728330:CDS | 45.0% |
| !! | AAGCGCGGCTTTAGGTATTT+GGG | + | chr5_1:32889025-32889044 | Msa0728330:CDS | 45.0% |
| GTTTCCAAGGTCTTTCTGCT+AGG | - | chr5_1:32889138-32889157 | None:intergenic | 45.0% | |
| AAAGTACAGACAAGGCCTCA+AGG | - | chr5_1:32889223-32889242 | None:intergenic | 45.0% | |
| GCAACAGCAAAATCCACACG+CGG | + | chr5_1:32887558-32887577 | Msa0728330:CDS | 50.0% | |
| GTTCGAGCTGCTTGCATTGT+CGG | + | chr5_1:32888174-32888193 | Msa0728330:CDS | 50.0% | |
| TTCGAGCTGCTTGCATTGTC+GGG | + | chr5_1:32888175-32888194 | Msa0728330:CDS | 50.0% | |
| GCAACAGCAAAATCCACACG+CGG | + | chr5_1:32887558-32887577 | Msa0728330:CDS | 50.0% | |
| GTTCGAGCTGCTTGCATTGT+CGG | + | chr5_1:32888174-32888193 | Msa0728330:CDS | 50.0% | |
| TTCGAGCTGCTTGCATTGTC+GGG | + | chr5_1:32888175-32888194 | Msa0728330:CDS | 50.0% | |
| AATCCACACGCGGCCGAGCT+TGG | + | chr5_1:32887568-32887587 | Msa0728330:CDS | 65.0% | |
| AATCCACACGCGGCCGAGCT+TGG | + | chr5_1:32887568-32887587 | Msa0728330:CDS | 65.0% | |
| TCACCAAGCTCGGCCGCGTG+TGG | - | chr5_1:32887574-32887593 | None:intergenic | 70.0% | |
| TCACCAAGCTCGGCCGCGTG+TGG | - | chr5_1:32887574-32887593 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 32887116 | 32889324 | 32887116 | ID=Msa0728330;Name=Msa0728330 |
| chr5_1 | mRNA | 32887116 | 32889324 | 32887116 | ID=Msa0728330-mRNA-1;Parent=Msa0728330;Name=Msa0728330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=149|1|1|1|1|1|5|159|308 |
| chr5_1 | exon | 32887116 | 32887628 | 32887116 | ID=Msa0728330-mRNA-1:exon:10509;Parent=Msa0728330-mRNA-1 |
| chr5_1 | exon | 32887809 | 32887866 | 32887809 | ID=Msa0728330-mRNA-1:exon:10510;Parent=Msa0728330-mRNA-1 |
| chr5_1 | exon | 32888168 | 32888251 | 32888168 | ID=Msa0728330-mRNA-1:exon:10511;Parent=Msa0728330-mRNA-1 |
| chr5_1 | exon | 32888347 | 32888488 | 32888347 | ID=Msa0728330-mRNA-1:exon:10512;Parent=Msa0728330-mRNA-1 |
| chr5_1 | exon | 32888887 | 32889324 | 32888887 | ID=Msa0728330-mRNA-1:exon:10513;Parent=Msa0728330-mRNA-1 |
| chr5_1 | five_prime_UTR | 32887116 | 32887264 | 32887116 | ID=Msa0728330-mRNA-1:five_prime_utr;Parent=Msa0728330-mRNA-1 |
| chr5_1 | CDS | 32887265 | 32887628 | 32887265 | ID=Msa0728330-mRNA-1:cds;Parent=Msa0728330-mRNA-1 |
| chr5_1 | CDS | 32887809 | 32887866 | 32887809 | ID=Msa0728330-mRNA-1:cds;Parent=Msa0728330-mRNA-1 |
| chr5_1 | CDS | 32888168 | 32888251 | 32888168 | ID=Msa0728330-mRNA-1:cds;Parent=Msa0728330-mRNA-1 |
| chr5_1 | CDS | 32888347 | 32888488 | 32888347 | ID=Msa0728330-mRNA-1:cds;Parent=Msa0728330-mRNA-1 |
| chr5_1 | CDS | 32888887 | 32889165 | 32888887 | ID=Msa0728330-mRNA-1:cds;Parent=Msa0728330-mRNA-1 |
| chr5_1 | three_prime_UTR | 32889166 | 32889324 | 32889166 | ID=Msa0728330-mRNA-1:three_prime_utr;Parent=Msa0728330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
