Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839190 | XP_013443504.1 | 80.844 | 308 | 16 | 2 | 1 | 265 | 1 | 308 | 4.36e-172 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839190 | sp|P05100|3MG1_ECOLI | 35.359 | 181 | 96 | 2 | 87 | 248 | 1 | 179 | 9.28e-36 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839190 | A0A072TIY7 | 80.844 | 308 | 16 | 2 | 1 | 265 | 1 | 308 | 2.08e-172 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0839190 | 0.814215 | 1.725495e-51 | -8.615850e-47 |
| Msa0025330 | Msa0839190 | 0.812695 | 3.724160e-51 | -8.615850e-47 |
| Msa0028170 | Msa0839190 | 0.801592 | 8.371527e-49 | -8.615850e-47 |
| Msa0072900 | Msa0839190 | 0.820954 | 5.221186e-53 | -8.615850e-47 |
| Msa0108160 | Msa0839190 | 0.817469 | 3.245581e-52 | -8.615850e-47 |
| Msa0615420 | Msa0839190 | 0.803147 | 4.004041e-49 | -8.615850e-47 |
| Msa0626450 | Msa0839190 | 0.810697 | 1.013509e-50 | -8.615850e-47 |
| Msa0626490 | Msa0839190 | 0.810569 | 1.080050e-50 | -8.615850e-47 |
| Msa0664600 | Msa0839190 | 0.815504 | 8.936940e-52 | -8.615850e-47 |
| Msa0683510 | Msa0839190 | 0.806794 | 6.919914e-50 | -8.615850e-47 |
| Msa0698640 | Msa0839190 | 0.806597 | 7.614243e-50 | -8.615850e-47 |
| Msa0712590 | Msa0839190 | 0.807613 | 4.640802e-50 | -8.615850e-47 |
| Msa0728330 | Msa0839190 | 0.826898 | 2.106867e-54 | -8.615850e-47 |
| Msa0731940 | Msa0839190 | 0.816305 | 5.923566e-52 | -8.615850e-47 |
| Msa0816710 | Msa0839190 | 0.806683 | 7.301021e-50 | -8.615850e-47 |
| Msa0824660 | Msa0839190 | 0.807189 | 5.707945e-50 | -8.615850e-47 |
| Msa0839190 | Msa0861510 | 0.807478 | 4.957525e-50 | -8.615850e-47 |
| Msa0839190 | Msa0861600 | 0.817123 | 3.882916e-52 | -8.615850e-47 |
| Msa0839190 | Msa0880140 | 0.818947 | 1.502048e-52 | -8.615850e-47 |
| Msa0839190 | Msa0926890 | 0.805022 | 1.631691e-49 | -8.615850e-47 |
| Msa0839190 | Msa0967870 | 0.803263 | 3.789363e-49 | -8.615850e-47 |
| Msa0839190 | Msa0969520 | 0.800012 | 1.759900e-48 | -8.615850e-47 |
| Msa0839190 | Msa1016320 | 0.805187 | 1.506475e-49 | -8.615850e-47 |
| Msa0839190 | Msa1019430 | 0.813408 | 2.598728e-51 | -8.615850e-47 |
| Msa0839190 | Msa1019470 | 0.804395 | 2.204867e-49 | -8.615850e-47 |
| Msa0839190 | Msa1023500 | 0.803575 | 3.264741e-49 | -8.615850e-47 |
| Msa0839190 | Msa1024740 | 0.847223 | 1.325120e-59 | -8.615850e-47 |
| Msa0839190 | Msa1031930 | 0.810623 | 1.051520e-50 | -8.615850e-47 |
| Msa0839190 | Msa1063500 | 0.813130 | 2.990628e-51 | -8.615850e-47 |
| Msa0839190 | Msa1082500 | 0.801299 | 9.612565e-49 | -8.615850e-47 |
| Msa0839190 | Msa1108790 | 0.842395 | 2.654701e-58 | -8.615850e-47 |
| Msa0839190 | Msa1122520 | 0.800819 | 1.205262e-48 | -8.615850e-47 |
| Msa0839190 | Msa1137570 | 0.809981 | 1.446066e-50 | -8.615850e-47 |
| Msa0839190 | Msa1151910 | 0.804703 | 1.902229e-49 | -8.615850e-47 |
| Msa0839190 | Msa1152510 | 0.816052 | 6.745334e-52 | -8.615850e-47 |
| Msa0839190 | Msa1197350 | 0.802843 | 4.628067e-49 | -8.615850e-47 |
| Msa0839190 | Msa1283860 | 0.807131 | 5.871359e-50 | -8.615850e-47 |
| Msa0839190 | Msa1284680 | 0.803777 | 2.964167e-49 | -8.615850e-47 |
| Msa0839190 | Msa1341520 | 0.803432 | 3.496626e-49 | -8.615850e-47 |
| Msa0839190 | Msa1349550 | 0.804033 | 2.622844e-49 | -8.615850e-47 |
| Msa0839190 | Msa1353470 | 0.828025 | 1.130573e-54 | -8.615850e-47 |
| Msa0839190 | Msa1440960 | 0.801906 | 7.217210e-49 | -8.615850e-47 |
| Msa0839190 | Msa1466540 | 0.808330 | 3.265502e-50 | -8.615850e-47 |
| Msa0121090 | Msa0839190 | 0.820418 | 6.933131e-53 | -8.615850e-47 |
| Msa0157290 | Msa0839190 | 0.814518 | 1.478752e-51 | -8.615850e-47 |
| Msa0160130 | Msa0839190 | 0.823344 | 1.457018e-53 | -8.615850e-47 |
| Msa0199960 | Msa0839190 | 0.803069 | 4.156031e-49 | -8.615850e-47 |
| Msa0218810 | Msa0839190 | 0.841152 | 5.651196e-58 | -8.615850e-47 |
| Msa0225100 | Msa0839190 | 0.807041 | 6.135226e-50 | -8.615850e-47 |
| Msa0367870 | Msa0839190 | 0.807269 | 5.489932e-50 | -8.615850e-47 |
| Msa0389880 | Msa0839190 | 0.811309 | 7.468313e-51 | -8.615850e-47 |
| Msa0392380 | Msa0839190 | 0.805370 | 1.379427e-49 | -8.615850e-47 |
| Msa0417270 | Msa0839190 | 0.802198 | 6.285332e-49 | -8.615850e-47 |
| Msa0464680 | Msa0839190 | 0.805594 | 1.238106e-49 | -8.615850e-47 |
| Msa0471670 | Msa0839190 | 0.801601 | 8.336310e-49 | -8.615850e-47 |
| Msa0243600 | Msa0839190 | 0.820216 | 7.713174e-53 | -8.615850e-47 |
| Msa0258310 | Msa0839190 | 0.810763 | 9.804655e-51 | -8.615850e-47 |
| Msa0266180 | Msa0839190 | 0.805867 | 1.085074e-49 | -8.615850e-47 |
| Msa0287740 | Msa0839190 | 0.814482 | 1.506259e-51 | -8.615850e-47 |
| Msa0288100 | Msa0839190 | 0.801780 | 7.660378e-49 | -8.615850e-47 |
| Msa0297790 | Msa0839190 | 0.819127 | 1.367510e-52 | -8.615850e-47 |
| Msa0319940 | Msa0839190 | 0.808471 | 3.047653e-50 | -8.615850e-47 |
| Msa0335800 | Msa0839190 | 0.822893 | 1.856025e-53 | -8.615850e-47 |
| Msa0488560 | Msa0839190 | 0.804132 | 2.501229e-49 | -8.615850e-47 |
| Msa0569200 | Msa0839190 | 0.808601 | 2.858911e-50 | -8.615850e-47 |
| Msa0589690 | Msa0839190 | 0.814639 | 1.390840e-51 | -8.615850e-47 |
| Msa0601750 | Msa0839190 | 0.803976 | 2.695620e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839190 | MtrunA17_Chr5g0420791 | 80.844 | 308 | 16 | 2 | 1 | 265 | 1 | 308 | 4.01e-176 | 487 |
| Msa0839190 | MtrunA17_Chr8g0366071 | 56.825 | 315 | 86 | 5 | 1 | 265 | 1 | 315 | 5.64e-123 | 353 |
| Msa0839190 | MtrunA17_Chr4g0001371 | 47.594 | 187 | 79 | 1 | 88 | 255 | 137 | 323 | 2.12e-62 | 200 |
| Msa0839190 | MtrunA17_Chr4g0073991 | 46.597 | 191 | 83 | 1 | 88 | 259 | 148 | 338 | 1.52e-61 | 198 |
| Msa0839190 | MtrunA17_Chr2g0309681 | 44.271 | 192 | 86 | 2 | 86 | 258 | 199 | 388 | 3.91e-54 | 179 |
| Msa0839190 | MtrunA17_Chr3g0141411 | 41.176 | 187 | 90 | 2 | 88 | 254 | 128 | 314 | 7.80e-52 | 172 |
| Msa0839190 | MtrunA17_Chr8g0356301 | 40.104 | 192 | 94 | 2 | 86 | 258 | 193 | 382 | 2.00e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839190 | AT1G13635.2 | 51.000 | 300 | 102 | 3 | 11 | 265 | 12 | 311 | 2.86e-99 | 293 |
| Msa0839190 | AT1G13635.1 | 51.000 | 300 | 102 | 3 | 11 | 265 | 12 | 311 | 2.86e-99 | 293 |
| Msa0839190 | AT5G57970.1 | 45.312 | 192 | 86 | 1 | 88 | 260 | 154 | 345 | 2.01e-62 | 200 |
| Msa0839190 | AT5G57970.2 | 45.312 | 192 | 86 | 1 | 88 | 260 | 154 | 345 | 2.01e-62 | 200 |
| Msa0839190 | AT1G75090.1 | 44.103 | 195 | 90 | 1 | 85 | 260 | 116 | 310 | 1.45e-58 | 189 |
| Msa0839190 | AT1G15970.1 | 45.026 | 191 | 86 | 1 | 88 | 259 | 145 | 335 | 2.00e-58 | 190 |
| Msa0839190 | AT1G15970.2 | 45.026 | 191 | 86 | 1 | 88 | 259 | 145 | 335 | 2.00e-58 | 190 |
| Msa0839190 | AT1G80850.1 | 45.078 | 193 | 83 | 4 | 88 | 259 | 134 | 324 | 4.51e-55 | 180 |
| Msa0839190 | AT5G44680.1 | 40.000 | 190 | 93 | 2 | 88 | 258 | 164 | 351 | 7.52e-50 | 167 |
| Msa0839190 | AT3G12710.1 | 38.424 | 203 | 98 | 3 | 78 | 261 | 118 | 312 | 1.34e-48 | 163 |
Find 40 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCGCGGCTTTAGATATT+TGG | 0.131071 | 5_4:-14032173 | Msa0839190:CDS |
| GACTTCCTTCTCCTCCATTT+TGG | 0.156245 | 5_4:+14032815 | None:intergenic |
| GGTTCAATTTCTTTGATTCT+TGG | 0.223191 | 5_4:+14033881 | None:intergenic |
| TCCTTACATTGTTTCCAAAA+TGG | 0.227659 | 5_4:-14032829 | Msa0839190:CDS |
| TTGCTTATGGCATCTGCTTT+TGG | 0.249904 | 5_4:+14032205 | None:intergenic |
| CTTTAATAAGTCCTTGCTTA+TGG | 0.266645 | 5_4:+14032192 | None:intergenic |
| ATCATCTTGTTGGTTGTTAT+AGG | 0.295068 | 5_4:-14032102 | Msa0839190:CDS |
| ATTCAAGAGATGTTCCATTA+AGG | 0.327044 | 5_4:-14032231 | Msa0839190:CDS |
| AGAATTTCATGACGAGTGTT+GGG | 0.361762 | 5_4:-14033374 | Msa0839190:CDS |
| GTTCGAGCTGCTTGCATTGT+CGG | 0.373218 | 5_4:-14033022 | Msa0839190:CDS |
| TTCGAGCTGCTTGCATTGTC+GGG | 0.378913 | 5_4:-14033021 | Msa0839190:CDS |
| ACTTACCTTCATCATGCATT+TGG | 0.389358 | 5_4:+14032725 | None:intergenic |
| AAGCGCGGCTTTAGATATTT+GGG | 0.391567 | 5_4:-14032172 | Msa0839190:CDS |
| GTGAATTGAAAAGATGCAAC+TGG | 0.419584 | 5_4:-14033606 | Msa0839190:CDS |
| TTGACTATTGATCATCTTGT+TGG | 0.439859 | 5_4:-14032112 | Msa0839190:CDS |
| ATGTCTAAAGTAAATGCAAA+AGG | 0.443146 | 5_4:-14033931 | Msa0839190:CDS |
| GATTGCTGATAGATTACAAC+TGG | 0.448023 | 5_4:-14032999 | Msa0839190:CDS |
| TAGAATTTCATGACGAGTGT+TGG | 0.462863 | 5_4:-14033375 | Msa0839190:CDS |
| GTTTCCAAGGTCTTTCTGCT+AGG | 0.469373 | 5_4:+14032062 | None:intergenic |
| GTCAATTAAATATGTTTCCA+AGG | 0.488711 | 5_4:+14032049 | None:intergenic |
| CTCAAAAGAGTGTACCCTAT+AGG | 0.496520 | 5_4:-14033838 | Msa0839190:CDS |
| AATCCACACGCGGCCGAGCT+TGG | 0.497436 | 5_4:-14033628 | Msa0839190:CDS |
| TCTTACTTGTCATCATAAGC+TGG | 0.505298 | 5_4:+14033346 | None:intergenic |
| TGTTTCCAAAATGGAGGAGA+AGG | 0.517813 | 5_4:-14032820 | Msa0839190:CDS |
| TAAACCTAGCAGAAAGACCT+TGG | 0.528766 | 5_4:-14032066 | Msa0839190:CDS |
| TGTCTAAAGTAAATGCAAAA+GGG | 0.542239 | 5_4:-14033930 | Msa0839190:CDS |
| TTACATTGTTTCCAAAATGG+AGG | 0.563021 | 5_4:-14032826 | Msa0839190:CDS |
| TCACCAAGCTCGGCCGCGTG+TGG | 0.564507 | 5_4:+14033625 | None:intergenic |
| AATGGAGGAGAAGGAAGTCA+TGG | 0.577176 | 5_4:-14032811 | Msa0839190:CDS |
| ATAAAAGAGTAAACAATCAC+AGG | 0.581777 | 5_4:+14032148 | None:intergenic |
| GAATTTCATGACGAGTGTTG+GGG | 0.593604 | 5_4:-14033373 | Msa0839190:CDS |
| AAATGCAAAAGGGCATGCAA+TGG | 0.595928 | 5_4:-14033920 | Msa0839190:CDS |
| TTCAGCTAAAACAAGTTCTG+TGG | 0.614788 | 5_4:+14032776 | None:intergenic |
| ATGCAGAGTTCAGTGCATAG+TGG | 0.617607 | 5_4:-14032754 | Msa0839190:CDS |
| AGCAAGGACTTATTAAAGCG+CGG | 0.619308 | 5_4:-14032187 | Msa0839190:CDS |
| CAATGCCAAATGCATGATGA+AGG | 0.621689 | 5_4:-14032730 | Msa0839190:CDS |
| AAAAGCAGATGCCATAAGCA+AGG | 0.629423 | 5_4:-14032203 | Msa0839190:CDS |
| GCAACAGCAAAATCCACACG+CGG | 0.644788 | 5_4:-14033638 | Msa0839190:CDS |
| GTATGTTCTCTTCTCTGACG+TGG | 0.663501 | 5_4:+14033679 | None:intergenic |
| AACTGGATCACAAAGAACTG+TGG | 0.728528 | 5_4:-14033589 | Msa0839190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTTTCTACAAATT+AGG | - | chr5_4:14033658-14033677 | Msa0839190:CDS | 15.0% |
| !!! | ATTTTCTTTTTCTACAAATT+AGG | - | chr5_4:14033658-14033677 | Msa0839190:CDS | 15.0% |
| !!! | AACTTTTTTGTAATCCTATA+GGG | + | chr5_4:14032164-14032183 | None:intergenic | 20.0% |
| !! | ATTATATTTATGCAACAGAA+AGG | + | chr5_4:14032457-14032476 | None:intergenic | 20.0% |
| !!! | CAAATAAATGTTGTTTTTGA+AGG | + | chr5_4:14032697-14032716 | None:intergenic | 20.0% |
| !! | AAATTAAGTCAACAAAAATG+TGG | + | chr5_4:14033314-14033333 | None:intergenic | 20.0% |
| !!! | TTTTGTTGACTTAATTTCTT+TGG | - | chr5_4:14033317-14033336 | Msa0839190:intron | 20.0% |
| !! | AATGATAACAAAGATAACAA+CGG | + | chr5_4:14033351-14033370 | None:intergenic | 20.0% |
| !!! | AAACAATGAAAACAATCTTT+TGG | + | chr5_4:14033484-14033503 | None:intergenic | 20.0% |
| !!! | AACTTTTTTGTAATCCTATA+GGG | + | chr5_4:14032164-14032183 | None:intergenic | 20.0% |
| !! | ATTATATTTATGCAACAGAA+AGG | + | chr5_4:14032457-14032476 | None:intergenic | 20.0% |
| !!! | CAAATAAATGTTGTTTTTGA+AGG | + | chr5_4:14032697-14032716 | None:intergenic | 20.0% |
| !! | AAATTAAGTCAACAAAAATG+TGG | + | chr5_4:14033314-14033333 | None:intergenic | 20.0% |
| !!! | TTTTGTTGACTTAATTTCTT+TGG | - | chr5_4:14033317-14033336 | Msa0839190:intron | 20.0% |
| !! | AATGATAACAAAGATAACAA+CGG | + | chr5_4:14033351-14033370 | None:intergenic | 20.0% |
| !!! | AAACAATGAAAACAATCTTT+TGG | + | chr5_4:14033484-14033503 | None:intergenic | 20.0% |
| !! | ATGTCTAAAGTAAATGCAAA+AGG | - | chr5_4:14032054-14032073 | Msa0839190:CDS | 25.0% |
| !! | TGTCTAAAGTAAATGCAAAA+GGG | - | chr5_4:14032055-14032074 | Msa0839190:CDS | 25.0% |
| !!! | GAACTTTTTTGTAATCCTAT+AGG | + | chr5_4:14032165-14032184 | None:intergenic | 25.0% |
| !! | TGATGATGAAAATGAAGATA+TGG | + | chr5_4:14032199-14032218 | None:intergenic | 25.0% |
| ! | CTTCTTATTGTAATTTCTCT+TGG | + | chr5_4:14032550-14032569 | None:intergenic | 25.0% |
| ! | AGAAGTAAGAAATGATAAAG+AGG | - | chr5_4:14032565-14032584 | Msa0839190:intron | 25.0% |
| !!! | ATGTTGTTTTTGAAGGAAAA+AGG | + | chr5_4:14032690-14032709 | None:intergenic | 25.0% |
| !!! | GACGGTTCATATTTTAAATT+CGG | - | chr5_4:14032766-14032785 | Msa0839190:CDS | 25.0% |
| !! | GACAGAAATTCTAAAAAGAA+AGG | - | chr5_4:14033008-14033027 | Msa0839190:CDS | 25.0% |
| ! | TAAAAAGAAAGGAAGTTCTA+AGG | - | chr5_4:14033019-14033038 | Msa0839190:CDS | 25.0% |
| !! | TTCTTTTTCTACAAATTAGG+AGG | - | chr5_4:14033661-14033680 | Msa0839190:CDS | 25.0% |
| !! | TCTTTTTCTACAAATTAGGA+GGG | - | chr5_4:14033662-14033681 | Msa0839190:CDS | 25.0% |
| !! | TATCTGTATTTGTTAATCAC+TGG | + | chr5_4:14033735-14033754 | None:intergenic | 25.0% |
| ! | ATAAAAGAGTAAACAATCAC+AGG | + | chr5_4:14033840-14033859 | None:intergenic | 25.0% |
| !! | ATGTCTAAAGTAAATGCAAA+AGG | - | chr5_4:14032054-14032073 | Msa0839190:CDS | 25.0% |
| !! | TGTCTAAAGTAAATGCAAAA+GGG | - | chr5_4:14032055-14032074 | Msa0839190:CDS | 25.0% |
| !!! | GAACTTTTTTGTAATCCTAT+AGG | + | chr5_4:14032165-14032184 | None:intergenic | 25.0% |
| !! | TGATGATGAAAATGAAGATA+TGG | + | chr5_4:14032199-14032218 | None:intergenic | 25.0% |
| ! | CTTCTTATTGTAATTTCTCT+TGG | + | chr5_4:14032550-14032569 | None:intergenic | 25.0% |
| ! | AGAAGTAAGAAATGATAAAG+AGG | - | chr5_4:14032565-14032584 | Msa0839190:intron | 25.0% |
| !!! | ATGTTGTTTTTGAAGGAAAA+AGG | + | chr5_4:14032690-14032709 | None:intergenic | 25.0% |
| !!! | GACGGTTCATATTTTAAATT+CGG | - | chr5_4:14032766-14032785 | Msa0839190:CDS | 25.0% |
| !! | GACAGAAATTCTAAAAAGAA+AGG | - | chr5_4:14033008-14033027 | Msa0839190:CDS | 25.0% |
| ! | TAAAAAGAAAGGAAGTTCTA+AGG | - | chr5_4:14033019-14033038 | Msa0839190:CDS | 25.0% |
| !! | TTCTTTTTCTACAAATTAGG+AGG | - | chr5_4:14033661-14033680 | Msa0839190:CDS | 25.0% |
| !! | TCTTTTTCTACAAATTAGGA+GGG | - | chr5_4:14033662-14033681 | Msa0839190:CDS | 25.0% |
| !! | TATCTGTATTTGTTAATCAC+TGG | + | chr5_4:14033735-14033754 | None:intergenic | 25.0% |
| ! | ATAAAAGAGTAAACAATCAC+AGG | + | chr5_4:14033840-14033859 | None:intergenic | 25.0% |
| GGTTCAATTTCTTTGATTCT+TGG | + | chr5_4:14032107-14032126 | None:intergenic | 30.0% | |
| GGTGTTTGTGGAAAAATATT+TGG | + | chr5_4:14032128-14032147 | None:intergenic | 30.0% | |
| TCTCTTGGTGAAAATGTTAT+TGG | + | chr5_4:14032535-14032554 | None:intergenic | 30.0% | |
| ACAGTTGGATAAAAATGAGA+CGG | - | chr5_4:14032748-14032767 | Msa0839190:CDS | 30.0% | |
| GAAATTACTCTATAGTGACT+TGG | - | chr5_4:14032854-14032873 | Msa0839190:intron | 30.0% | |
| !! | GTTCAAGAAATTTAGCTTGT+TGG | + | chr5_4:14032927-14032946 | None:intergenic | 30.0% |
| TCCTTACATTGTTTCCAAAA+TGG | - | chr5_4:14033156-14033175 | Msa0839190:intron | 30.0% | |
| !! | TCCATTTTGGAAACAATGTA+AGG | + | chr5_4:14033160-14033179 | None:intergenic | 30.0% |
| TTACATTGTTTCCAAAATGG+AGG | - | chr5_4:14033159-14033178 | Msa0839190:intron | 30.0% | |
| AGAAAATCAATCGCCAATAA+GGG | + | chr5_4:14033645-14033664 | None:intergenic | 30.0% | |
| AAGAAAATCAATCGCCAATA+AGG | + | chr5_4:14033646-14033665 | None:intergenic | 30.0% | |
| GATCATTCAGTAGCTATATA+TGG | - | chr5_4:14033691-14033710 | Msa0839190:CDS | 30.0% | |
| ATTCAAGAGATGTTCCATTA+AGG | - | chr5_4:14033754-14033773 | Msa0839190:intron | 30.0% | |
| CTTTAATAAGTCCTTGCTTA+TGG | + | chr5_4:14033796-14033815 | None:intergenic | 30.0% | |
| TTGACTATTGATCATCTTGT+TGG | - | chr5_4:14033873-14033892 | Msa0839190:CDS | 30.0% | |
| ! | ATCATCTTGTTGGTTGTTAT+AGG | - | chr5_4:14033883-14033902 | Msa0839190:CDS | 30.0% |
| GGTTCAATTTCTTTGATTCT+TGG | + | chr5_4:14032107-14032126 | None:intergenic | 30.0% | |
| GGTGTTTGTGGAAAAATATT+TGG | + | chr5_4:14032128-14032147 | None:intergenic | 30.0% | |
| TCTCTTGGTGAAAATGTTAT+TGG | + | chr5_4:14032535-14032554 | None:intergenic | 30.0% | |
| ACAGTTGGATAAAAATGAGA+CGG | - | chr5_4:14032748-14032767 | Msa0839190:CDS | 30.0% | |
| GAAATTACTCTATAGTGACT+TGG | - | chr5_4:14032854-14032873 | Msa0839190:intron | 30.0% | |
| !! | GTTCAAGAAATTTAGCTTGT+TGG | + | chr5_4:14032927-14032946 | None:intergenic | 30.0% |
| TCCTTACATTGTTTCCAAAA+TGG | - | chr5_4:14033156-14033175 | Msa0839190:intron | 30.0% | |
| !! | TCCATTTTGGAAACAATGTA+AGG | + | chr5_4:14033160-14033179 | None:intergenic | 30.0% |
| TTACATTGTTTCCAAAATGG+AGG | - | chr5_4:14033159-14033178 | Msa0839190:intron | 30.0% | |
| AGAAAATCAATCGCCAATAA+GGG | + | chr5_4:14033645-14033664 | None:intergenic | 30.0% | |
| AAGAAAATCAATCGCCAATA+AGG | + | chr5_4:14033646-14033665 | None:intergenic | 30.0% | |
| GATCATTCAGTAGCTATATA+TGG | - | chr5_4:14033691-14033710 | Msa0839190:CDS | 30.0% | |
| ATTCAAGAGATGTTCCATTA+AGG | - | chr5_4:14033754-14033773 | Msa0839190:intron | 30.0% | |
| CTTTAATAAGTCCTTGCTTA+TGG | + | chr5_4:14033796-14033815 | None:intergenic | 30.0% | |
| TTGACTATTGATCATCTTGT+TGG | - | chr5_4:14033873-14033892 | Msa0839190:CDS | 30.0% | |
| ! | ATCATCTTGTTGGTTGTTAT+AGG | - | chr5_4:14033883-14033902 | Msa0839190:CDS | 30.0% |
| ! | TCTTTTCAATTCACCAAGCT+CGG | + | chr5_4:14032373-14032392 | None:intergenic | 35.0% |
| GTGAATTGAAAAGATGCAAC+TGG | - | chr5_4:14032379-14032398 | Msa0839190:intron | 35.0% | |
| !! | AAAGAGGTATTGTGCAGATA+AGG | - | chr5_4:14032581-14032600 | Msa0839190:intron | 35.0% |
| TAGAATTTCATGACGAGTGT+TGG | - | chr5_4:14032610-14032629 | Msa0839190:intron | 35.0% | |
| AGAATTTCATGACGAGTGTT+GGG | - | chr5_4:14032611-14032630 | Msa0839190:intron | 35.0% | |
| TCTTACTTGTCATCATAAGC+TGG | + | chr5_4:14032642-14032661 | None:intergenic | 35.0% | |
| GTAATTTCTATCAGAGCTGT+TGG | + | chr5_4:14032842-14032861 | None:intergenic | 35.0% | |
| !!! | TAGTGACTTGGTATTTTGAC+CGG | - | chr5_4:14032866-14032885 | Msa0839190:intron | 35.0% |
| TGCATACGAACATATGGAAA+TGG | + | chr5_4:14032900-14032919 | None:intergenic | 35.0% | |
| GGAAAATGCATACGAACATA+TGG | + | chr5_4:14032906-14032925 | None:intergenic | 35.0% | |
| GATTGCTGATAGATTACAAC+TGG | - | chr5_4:14032986-14033005 | Msa0839190:CDS | 35.0% | |
| TTCAGCTAAAACAAGTTCTG+TGG | + | chr5_4:14033212-14033231 | None:intergenic | 35.0% | |
| ACTTACCTTCATCATGCATT+TGG | + | chr5_4:14033263-14033282 | None:intergenic | 35.0% | |
| GAGAATAACGAAGGCAAATT+AGG | + | chr5_4:14033523-14033542 | None:intergenic | 35.0% | |
| TGTGATAGAGAGAATAACGA+AGG | + | chr5_4:14033532-14033551 | None:intergenic | 35.0% | |
| CTACAAATTAGGAGGGAATA+TGG | - | chr5_4:14033669-14033688 | Msa0839190:CDS | 35.0% | |
| ! | TCTTTTCAATTCACCAAGCT+CGG | + | chr5_4:14032373-14032392 | None:intergenic | 35.0% |
| GTGAATTGAAAAGATGCAAC+TGG | - | chr5_4:14032379-14032398 | Msa0839190:intron | 35.0% | |
| !! | AAAGAGGTATTGTGCAGATA+AGG | - | chr5_4:14032581-14032600 | Msa0839190:intron | 35.0% |
| TAGAATTTCATGACGAGTGT+TGG | - | chr5_4:14032610-14032629 | Msa0839190:intron | 35.0% | |
| AGAATTTCATGACGAGTGTT+GGG | - | chr5_4:14032611-14032630 | Msa0839190:intron | 35.0% | |
| TCTTACTTGTCATCATAAGC+TGG | + | chr5_4:14032642-14032661 | None:intergenic | 35.0% | |
| GTAATTTCTATCAGAGCTGT+TGG | + | chr5_4:14032842-14032861 | None:intergenic | 35.0% | |
| !!! | TAGTGACTTGGTATTTTGAC+CGG | - | chr5_4:14032866-14032885 | Msa0839190:intron | 35.0% |
| TGCATACGAACATATGGAAA+TGG | + | chr5_4:14032900-14032919 | None:intergenic | 35.0% | |
| GGAAAATGCATACGAACATA+TGG | + | chr5_4:14032906-14032925 | None:intergenic | 35.0% | |
| GATTGCTGATAGATTACAAC+TGG | - | chr5_4:14032986-14033005 | Msa0839190:CDS | 35.0% | |
| TTCAGCTAAAACAAGTTCTG+TGG | + | chr5_4:14033212-14033231 | None:intergenic | 35.0% | |
| ACTTACCTTCATCATGCATT+TGG | + | chr5_4:14033263-14033282 | None:intergenic | 35.0% | |
| GAGAATAACGAAGGCAAATT+AGG | + | chr5_4:14033523-14033542 | None:intergenic | 35.0% | |
| TGTGATAGAGAGAATAACGA+AGG | + | chr5_4:14033532-14033551 | None:intergenic | 35.0% | |
| CTACAAATTAGGAGGGAATA+TGG | - | chr5_4:14033669-14033688 | Msa0839190:CDS | 35.0% | |
| ! | AAATGCAAAAGGGCATGCAA+TGG | - | chr5_4:14032065-14032084 | Msa0839190:CDS | 40.0% |
| !!! | ACACTCTTTTGAGGTGTTTG+TGG | + | chr5_4:14032140-14032159 | None:intergenic | 40.0% |
| ! | CTATAGGGTACACTCTTTTG+AGG | + | chr5_4:14032149-14032168 | None:intergenic | 40.0% |
| ! | CTCAAAAGAGTGTACCCTAT+AGG | - | chr5_4:14032147-14032166 | Msa0839190:CDS | 40.0% |
| AACTGGATCACAAAGAACTG+TGG | - | chr5_4:14032396-14032415 | Msa0839190:intron | 40.0% | |
| ! | GAATTTCATGACGAGTGTTG+GGG | - | chr5_4:14032612-14032631 | Msa0839190:intron | 40.0% |
| AGTCAATATGTCAGCACAGT+TGG | - | chr5_4:14032733-14032752 | Msa0839190:CDS | 40.0% | |
| !!! | ACTTGGTATTTTGACCGGAA+CGG | - | chr5_4:14032871-14032890 | Msa0839190:intron | 40.0% |
| ! | TATGGAAATGGATTCCGTTC+CGG | + | chr5_4:14032888-14032907 | None:intergenic | 40.0% |
| TGTTTCCAAAATGGAGGAGA+AGG | - | chr5_4:14033165-14033184 | Msa0839190:intron | 40.0% | |
| CAATGCCAAATGCATGATGA+AGG | - | chr5_4:14033255-14033274 | Msa0839190:intron | 40.0% | |
| ! | AACGCTTTTCGAACCCTTAT+TGG | - | chr5_4:14033629-14033648 | Msa0839190:CDS | 40.0% |
| !!! | TCTGCTTTTGGTGTCCTTAA+TGG | + | chr5_4:14033771-14033790 | None:intergenic | 40.0% |
| ! | TTGCTTATGGCATCTGCTTT+TGG | + | chr5_4:14033783-14033802 | None:intergenic | 40.0% |
| AAAAGCAGATGCCATAAGCA+AGG | - | chr5_4:14033782-14033801 | Msa0839190:intron | 40.0% | |
| AGCAAGGACTTATTAAAGCG+CGG | - | chr5_4:14033798-14033817 | Msa0839190:intron | 40.0% | |
| !! | AAAGCGCGGCTTTAGATATT+TGG | - | chr5_4:14033812-14033831 | Msa0839190:intron | 40.0% |
| !! | AAGCGCGGCTTTAGATATTT+GGG | - | chr5_4:14033813-14033832 | Msa0839190:intron | 40.0% |
| ! | TACTCTTTTATGCAAGCTGC+AGG | - | chr5_4:14033849-14033868 | Msa0839190:CDS | 40.0% |
| TAAACCTAGCAGAAAGACCT+TGG | - | chr5_4:14033919-14033938 | Msa0839190:CDS | 40.0% | |
| ! | AAATGCAAAAGGGCATGCAA+TGG | - | chr5_4:14032065-14032084 | Msa0839190:CDS | 40.0% |
| !!! | ACACTCTTTTGAGGTGTTTG+TGG | + | chr5_4:14032140-14032159 | None:intergenic | 40.0% |
| ! | CTATAGGGTACACTCTTTTG+AGG | + | chr5_4:14032149-14032168 | None:intergenic | 40.0% |
| ! | CTCAAAAGAGTGTACCCTAT+AGG | - | chr5_4:14032147-14032166 | Msa0839190:CDS | 40.0% |
| AACTGGATCACAAAGAACTG+TGG | - | chr5_4:14032396-14032415 | Msa0839190:intron | 40.0% | |
| ! | GAATTTCATGACGAGTGTTG+GGG | - | chr5_4:14032612-14032631 | Msa0839190:intron | 40.0% |
| AGTCAATATGTCAGCACAGT+TGG | - | chr5_4:14032733-14032752 | Msa0839190:CDS | 40.0% | |
| !!! | ACTTGGTATTTTGACCGGAA+CGG | - | chr5_4:14032871-14032890 | Msa0839190:intron | 40.0% |
| ! | TATGGAAATGGATTCCGTTC+CGG | + | chr5_4:14032888-14032907 | None:intergenic | 40.0% |
| TGTTTCCAAAATGGAGGAGA+AGG | - | chr5_4:14033165-14033184 | Msa0839190:intron | 40.0% | |
| CAATGCCAAATGCATGATGA+AGG | - | chr5_4:14033255-14033274 | Msa0839190:intron | 40.0% | |
| ! | AACGCTTTTCGAACCCTTAT+TGG | - | chr5_4:14033629-14033648 | Msa0839190:CDS | 40.0% |
| !!! | TCTGCTTTTGGTGTCCTTAA+TGG | + | chr5_4:14033771-14033790 | None:intergenic | 40.0% |
| ! | TTGCTTATGGCATCTGCTTT+TGG | + | chr5_4:14033783-14033802 | None:intergenic | 40.0% |
| AAAAGCAGATGCCATAAGCA+AGG | - | chr5_4:14033782-14033801 | Msa0839190:intron | 40.0% | |
| AGCAAGGACTTATTAAAGCG+CGG | - | chr5_4:14033798-14033817 | Msa0839190:intron | 40.0% | |
| !! | AAAGCGCGGCTTTAGATATT+TGG | - | chr5_4:14033812-14033831 | Msa0839190:intron | 40.0% |
| !! | AAGCGCGGCTTTAGATATTT+GGG | - | chr5_4:14033813-14033832 | Msa0839190:intron | 40.0% |
| ! | TACTCTTTTATGCAAGCTGC+AGG | - | chr5_4:14033849-14033868 | Msa0839190:CDS | 40.0% |
| TAAACCTAGCAGAAAGACCT+TGG | - | chr5_4:14033919-14033938 | Msa0839190:CDS | 40.0% | |
| GTATGTTCTCTTCTCTGACG+TGG | + | chr5_4:14032309-14032328 | None:intergenic | 45.0% | |
| ! | TGACGCAGACAAGTTTTTGC+TGG | - | chr5_4:14033127-14033146 | Msa0839190:intron | 45.0% |
| ! | GACTTCCTTCTCCTCCATTT+TGG | + | chr5_4:14033173-14033192 | None:intergenic | 45.0% |
| AATGGAGGAGAAGGAAGTCA+TGG | - | chr5_4:14033174-14033193 | Msa0839190:intron | 45.0% | |
| ATGCAGAGTTCAGTGCATAG+TGG | - | chr5_4:14033231-14033250 | Msa0839190:intron | 45.0% | |
| GTTTCCAAGGTCTTTCTGCT+AGG | + | chr5_4:14033926-14033945 | None:intergenic | 45.0% | |
| GTATGTTCTCTTCTCTGACG+TGG | + | chr5_4:14032309-14032328 | None:intergenic | 45.0% | |
| ! | TGACGCAGACAAGTTTTTGC+TGG | - | chr5_4:14033127-14033146 | Msa0839190:intron | 45.0% |
| ! | GACTTCCTTCTCCTCCATTT+TGG | + | chr5_4:14033173-14033192 | None:intergenic | 45.0% |
| AATGGAGGAGAAGGAAGTCA+TGG | - | chr5_4:14033174-14033193 | Msa0839190:intron | 45.0% | |
| ATGCAGAGTTCAGTGCATAG+TGG | - | chr5_4:14033231-14033250 | Msa0839190:intron | 45.0% | |
| GTTTCCAAGGTCTTTCTGCT+AGG | + | chr5_4:14033926-14033945 | None:intergenic | 45.0% | |
| GCAACAGCAAAATCCACACG+CGG | - | chr5_4:14032347-14032366 | Msa0839190:intron | 50.0% | |
| GTTCGAGCTGCTTGCATTGT+CGG | - | chr5_4:14032963-14032982 | Msa0839190:intron | 50.0% | |
| TTCGAGCTGCTTGCATTGTC+GGG | - | chr5_4:14032964-14032983 | Msa0839190:intron | 50.0% | |
| GCAACAGCAAAATCCACACG+CGG | - | chr5_4:14032347-14032366 | Msa0839190:intron | 50.0% | |
| GTTCGAGCTGCTTGCATTGT+CGG | - | chr5_4:14032963-14032982 | Msa0839190:intron | 50.0% | |
| TTCGAGCTGCTTGCATTGTC+GGG | - | chr5_4:14032964-14032983 | Msa0839190:intron | 50.0% | |
| AATCCACACGCGGCCGAGCT+TGG | - | chr5_4:14032357-14032376 | Msa0839190:intron | 65.0% | |
| AATCCACACGCGGCCGAGCT+TGG | - | chr5_4:14032357-14032376 | Msa0839190:intron | 65.0% | |
| TCACCAAGCTCGGCCGCGTG+TGG | + | chr5_4:14032363-14032382 | None:intergenic | 70.0% | |
| TCACCAAGCTCGGCCGCGTG+TGG | + | chr5_4:14032363-14032382 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 14032054 | 14033953 | 14032054 | ID=Msa0839190;Name=Msa0839190 |
| chr5_4 | mRNA | 14032054 | 14033953 | 14032054 | ID=Msa0839190-mRNA-1;Parent=Msa0839190;Name=Msa0839190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.6|0.33|1|0.6|0.33|6|0|265 |
| chr5_4 | exon | 14033827 | 14033953 | 14033827 | ID=Msa0839190-mRNA-1:exon:6183;Parent=Msa0839190-mRNA-1 |
| chr5_4 | exon | 14033590 | 14033754 | 14033590 | ID=Msa0839190-mRNA-1:exon:6182;Parent=Msa0839190-mRNA-1 |
| chr5_4 | exon | 14033352 | 14033409 | 14033352 | ID=Msa0839190-mRNA-1:exon:6181;Parent=Msa0839190-mRNA-1 |
| chr5_4 | exon | 14032967 | 14033050 | 14032967 | ID=Msa0839190-mRNA-1:exon:6180;Parent=Msa0839190-mRNA-1 |
| chr5_4 | exon | 14032727 | 14032872 | 14032727 | ID=Msa0839190-mRNA-1:exon:6179;Parent=Msa0839190-mRNA-1 |
| chr5_4 | exon | 14032054 | 14032271 | 14032054 | ID=Msa0839190-mRNA-1:exon:6178;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14033827 | 14033953 | 14033827 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14033590 | 14033754 | 14033590 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14033352 | 14033409 | 14033352 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14032967 | 14033050 | 14032967 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14032727 | 14032872 | 14032727 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| chr5_4 | CDS | 14032054 | 14032271 | 14032054 | ID=Msa0839190-mRNA-1:cds;Parent=Msa0839190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
