AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729520 MtrunA17_Chr5g0422621 94.215 363 19 2 1 363 1 361 0.0 686
Msa0729520 MtrunA17_Chr1g0198601 59.599 349 111 13 10 333 1 344 1.94e-123 360
Msa0729520 MtrunA17_Chr4g0062921 36.915 363 154 15 4 310 7 350 7.63e-52 178
Msa0729520 MtrunA17_Chr4g0045361 34.783 345 144 13 16 296 41 368 7.34e-43 154
Msa0729520 MtrunA17_Chr5g0402631 38.492 252 106 8 19 260 63 275 1.68e-36 135
Msa0729520 MtrunA17_Chr7g0261911 45.783 83 45 0 175 257 238 320 7.56e-14 72.4
Msa0729520 MtrunA17_Chr5g0400241 49.333 75 34 3 193 266 304 375 8.12e-14 72.8
Msa0729520 MtrunA17_Chr1g0175081 35.714 98 57 2 178 274 6 98 2.91e-13 65.5
Msa0729520 MtrunA17_Chr1g0190301 58.929 56 23 0 197 252 173 228 3.40e-13 70.1
Msa0729520 MtrunA17_Chr1g0161431 45.333 75 40 1 193 267 194 267 3.55e-13 70.9
Msa0729520 MtrunA17_Chr2g0291021 58.182 55 23 0 199 253 49 103 3.67e-13 69.7
Msa0729520 MtrunA17_Chr7g0255711 44.156 77 42 1 181 257 73 148 4.45e-13 68.9
Msa0729520 MtrunA17_Chr4g0054981 43.158 95 42 3 173 256 273 366 4.58e-13 70.5
Msa0729520 MtrunA17_Chr4g0067981 41.053 95 43 3 198 290 214 297 4.65e-13 70.5
Msa0729520 MtrunA17_Chr3g0137101 33.333 120 75 2 192 307 191 309 5.08e-13 70.5
Msa0729520 MtrunA17_Chr7g0254981 55.172 58 26 0 196 253 47 104 8.23e-13 68.2
Msa0729520 MtrunA17_Chr7g0274471 58.929 56 23 0 197 252 216 271 1.01e-12 68.9
Msa0729520 MtrunA17_Chr2g0304841 36.207 116 66 4 197 310 211 320 1.15e-12 69.3
Msa0729520 MtrunA17_Chr4g0009901 46.341 82 35 3 185 258 146 226 1.37e-12 67.4
Msa0729520 MtrunA17_Chr2g0294911 28.804 184 120 4 132 310 149 326 2.16e-12 68.2
Msa0729520 MtrunA17_Chr2g0288601 41.111 90 41 2 164 253 48 125 2.31e-12 63.5
Msa0729520 MtrunA17_Chr8g0356501 58.182 55 23 0 199 253 37 91 3.52e-12 67.0
Msa0729520 MtrunA17_Chr7g0243081 41.304 92 48 2 165 252 35 124 5.18e-12 66.2
Msa0729520 MtrunA17_Chr1g0149841 50.820 61 29 1 197 257 189 248 5.44e-12 67.0
Msa0729520 MtrunA17_Chr5g0417521 54.545 55 25 0 199 253 15 69 6.25e-12 66.2
Msa0729520 MtrunA17_Chr4g0031961 42.105 76 43 1 198 273 130 204 6.55e-12 65.9
Msa0729520 MtrunA17_Chr1g0149831 48.387 62 28 1 196 257 125 182 7.26e-12 64.7
Msa0729520 MtrunA17_Chr2g0324891 35.922 103 58 2 154 256 123 217 7.47e-12 66.2
Msa0729520 MtrunA17_Chr2g0310011 58.182 55 23 0 199 253 35 89 8.54e-12 65.9
Msa0729520 MtrunA17_Chr2g0290991 56.364 55 24 0 199 253 39 93 1.17e-11 65.1
Msa0729520 MtrunA17_Chr1g0175091 42.353 85 44 1 169 253 233 312 1.27e-11 65.5
Msa0729520 MtrunA17_Chr1g0210911 44.444 72 33 1 188 252 4 75 1.79e-11 64.7
Msa0729520 MtrunA17_Chr4g0074411 49.180 61 30 1 197 257 199 258 2.17e-11 65.1
Msa0729520 MtrunA17_Chr4g0042451 52.727 55 26 0 199 253 17 71 4.34e-11 63.5
Msa0729520 MtrunA17_Chr2g0321461 52.727 55 26 0 199 253 45 99 5.58e-11 63.5
Msa0729520 MtrunA17_Chr4g0040481 45.161 62 33 1 195 256 154 214 5.63e-11 63.5
Msa0729520 MtrunA17_Chr1g0197171 54.545 55 25 0 199 253 44 98 6.50e-11 62.8
Msa0729520 MtrunA17_Chr8g0366281 42.045 88 47 2 167 252 141 226 7.19e-11 62.8
Msa0729520 MtrunA17_Chr6g0461641 50.909 55 27 0 199 253 42 96 7.31e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729520 AT1G25550.1 45.970 335 147 9 1 320 1 316 1.15e-82 255
Msa0729520 AT1G68670.1 46.839 348 125 14 1 313 2 324 3.01e-75 237
Msa0729520 AT1G25550.2 50.575 261 115 6 1 249 1 259 4.46e-72 226
Msa0729520 AT3G25790.1 41.551 361 161 12 19 359 20 350 2.98e-62 203
Msa0729520 AT1G13300.1 45.070 284 103 9 20 285 20 268 3.30e-61 200
Msa0729520 AT3G25790.2 43.548 248 102 6 19 249 20 246 3.33e-47 161
Msa0729520 AT2G03500.1 33.934 333 159 9 1 294 18 328 1.73e-45 161
Msa0729520 AT4G37180.1 34.201 269 122 7 11 260 39 271 2.14e-32 124
Msa0729520 AT4G37180.2 33.457 269 131 7 11 260 39 278 2.94e-31 122
Msa0729520 AT4G37180.3 33.721 258 116 7 11 249 39 260 1.20e-27 110
Msa0729520 AT1G49560.1 31.900 279 138 10 16 279 27 268 2.04e-25 105
Msa0729520 AT1G49560.2 31.855 248 123 8 16 249 27 242 5.59e-21 91.7
Msa0729520 AT2G25180.1 37.600 125 63 4 197 307 193 316 9.98e-14 72.8
Msa0729520 AT5G58080.1 51.515 66 30 2 193 257 187 251 1.78e-13 72.0
Msa0729520 AT5G05090.1 44.872 78 42 1 180 257 62 138 2.11e-13 70.1
Msa0729520 AT2G01060.1 58.182 55 23 0 199 253 15 69 3.24e-13 69.7
Msa0729520 AT3G10760.1 51.667 60 28 1 198 257 104 162 1.17e-12 68.6
Msa0729520 AT2G06020.1 54.545 55 25 0 199 253 86 140 1.19e-12 68.2
Msa0729520 AT4G28610.1 49.254 67 34 0 186 252 212 278 1.26e-12 68.9
Msa0729520 AT2G40970.1 51.667 60 28 1 198 257 104 162 2.91e-12 66.6
Msa0729520 AT5G18240.2 40.000 90 50 1 168 253 10 99 3.22e-12 67.8
Msa0729520 AT5G18240.3 40.000 90 50 1 168 253 10 99 3.22e-12 67.8
Msa0729520 AT5G18240.5 40.000 90 50 1 168 253 10 99 3.64e-12 67.4
Msa0729520 AT5G18240.1 40.000 90 50 1 168 253 10 99 3.70e-12 67.4
Msa0729520 AT5G18240.4 40.000 90 50 1 168 253 10 99 3.70e-12 67.4
Msa0729520 AT2G20400.2 59.259 54 22 0 199 252 231 284 3.85e-12 67.4
Msa0729520 AT2G20400.1 59.259 54 22 0 199 252 231 284 3.87e-12 67.4
Msa0729520 AT2G01760.1 31.707 164 96 5 198 361 199 346 4.64e-12 67.0
Msa0729520 AT3G16857.3 47.368 76 34 2 187 257 150 224 4.78e-12 67.8
Msa0729520 AT2G01760.2 31.707 164 96 5 198 361 227 374 5.26e-12 67.0
Msa0729520 AT3G16857.2 47.368 76 34 2 187 257 220 294 5.42e-12 67.8
Msa0729520 AT4G13640.2 58.182 55 23 0 199 253 37 91 5.56e-12 66.2
Msa0729520 AT5G59570.2 38.462 104 44 3 154 257 115 198 5.70e-12 66.2
Msa0729520 AT5G59570.1 38.462 104 44 3 154 257 115 198 5.70e-12 66.2
Msa0729520 AT4G13640.1 58.182 55 23 0 199 253 37 91 6.12e-12 66.2
Msa0729520 AT2G01760.3 31.707 164 96 5 198 361 134 281 6.41e-12 66.2
Msa0729520 AT3G16857.1 47.368 76 34 2 187 257 220 294 6.87e-12 67.4
Msa0729520 AT3G24120.1 58.182 55 23 0 199 253 41 95 7.42e-12 65.9
Msa0729520 AT3G24120.2 58.182 55 23 0 199 253 41 95 7.89e-12 65.9
Msa0729520 AT4G18020.8 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT4G18020.11 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT4G18020.4 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT4G18020.5 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT4G18020.10 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT4G18020.7 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0729520 AT3G46640.3 29.825 171 95 4 123 273 52 217 1.39e-11 65.5
Msa0729520 AT1G79430.2 58.182 55 23 0 199 253 34 88 1.41e-11 65.5
Msa0729520 AT3G46640.2 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0729520 AT3G46640.1 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0729520 AT4G18020.3 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0729520 AT4G18020.2 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0729520 AT4G18020.1 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0729520 AT4G18020.6 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0729520 AT4G18020.9 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0729520 AT3G12730.1 56.364 55 24 0 199 253 23 77 1.74e-11 63.9
Msa0729520 AT3G04030.1 41.860 86 46 1 172 253 14 99 2.01e-11 65.1
Msa0729520 AT4G04605.1 53.846 52 24 0 201 252 16 67 2.07e-11 63.5
Msa0729520 AT3G04030.3 41.860 86 46 1 172 253 14 99 2.17e-11 65.1
Msa0729520 AT3G04450.3 55.556 54 24 0 199 252 238 291 2.23e-11 64.7
Msa0729520 AT5G29000.4 55.556 54 24 0 199 252 231 284 3.93e-11 63.9
Msa0729520 AT3G04450.4 55.556 54 24 0 199 252 198 251 4.00e-11 64.3
Msa0729520 AT3G04450.2 55.556 54 24 0 199 252 198 251 4.00e-11 64.3
Msa0729520 AT3G04450.1 55.556 54 24 0 199 252 238 291 4.17e-11 64.3
Msa0729520 AT1G49190.1 38.462 78 45 1 186 260 202 279 5.00e-11 63.9
Msa0729520 AT5G06800.3 50.909 55 27 0 199 253 192 246 5.09e-11 63.2
Msa0729520 AT3G13040.3 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0729520 AT3G13040.1 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0729520 AT3G13040.2 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0729520 AT5G29000.2 55.556 54 24 0 199 252 231 284 8.58e-11 63.5
Msa0729520 AT5G29000.1 55.556 54 24 0 199 252 188 241 8.96e-11 63.2
Msa0729520 AT5G29000.3 55.556 54 24 0 199 252 188 241 8.96e-11 63.2
Msa0729520 AT4G17695.1 51.724 58 28 0 195 252 160 217 9.53e-11 62.8

Find 89 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAACAGAATCAAATTT+TGG 0.168091 5_1:+36892224 None:intergenic
GGATCCACCAATGAAGAATA+TGG 0.224409 5_1:+36892200 None:intergenic
TTAGAATTGTTGTGAATTAT+TGG 0.251586 5_1:+36890381 None:intergenic
TTCTCCTGACACTGTTGTTT+TGG 0.263091 5_1:+36890287 None:intergenic
AAACCAGGCAAGAATATTAA+AGG 0.309301 5_1:-36892320 None:intergenic
TTGCTGCAGCTTTCAACAAT+TGG 0.314561 5_1:+36891028 None:intergenic
CAGCAGCGATTTCCTCTTTG+TGG 0.314629 5_1:+36891125 None:intergenic
TTTCAGCATCTTGAAGTTGT+AGG 0.327142 5_1:+36890084 None:intergenic
ATTAGTTCCCGGATCTGTTT+CGG 0.330999 5_1:+36890807 None:intergenic
TAGAATTGTTGTGAATTATT+GGG 0.348297 5_1:+36890382 None:intergenic
GAGGGTAAGGATGAATATAT+AGG 0.358023 5_1:+36892143 None:intergenic
GGGAAAACAGTTTGAGGAAG+AGG 0.359503 5_1:+36892124 None:intergenic
TGAAGTCAAAAGTCATTTGC+AGG 0.374794 5_1:-36890760 Msa0729520:intron
AATGGCTTATAAACAGAGTT+CGG 0.390807 5_1:+36892267 None:intergenic
ACGTGTAAGCAACAGTTGTT+TGG 0.397960 5_1:-36891797 Msa0729520:CDS
AGAGAAAGAGGAAGGTCTCT+AGG 0.412125 5_1:+36891973 None:intergenic
TCAGATCCCATATTCTTCAT+TGG 0.415956 5_1:-36892207 Msa0729520:five_prime_UTR
TATGTCCAACCACAAGAATA+TGG 0.427221 5_1:-36890321 Msa0729520:CDS
CTGTTGCTTACACGTTTCAA+TGG 0.431651 5_1:+36891805 None:intergenic
TATACCTCTTTAGCAGATGA+AGG 0.432154 5_1:+36891575 None:intergenic
CTGCCACGCCGAAACAGATC+CGG 0.438655 5_1:-36890815 Msa0729520:CDS
TGGAACACAATCGGAGTGTT+CGG 0.442544 5_1:-36891777 Msa0729520:CDS
ACCACAGTTACTACTCCAAC+AGG 0.442991 5_1:-36890261 Msa0729520:CDS
CAACCCTTCATCTGCTAAAG+AGG 0.450187 5_1:-36891579 Msa0729520:intron
ACAGTTTGAGGAAGAGGGTA+AGG 0.451178 5_1:+36892130 None:intergenic
CATCGACTTTCATTAGTTCC+CGG 0.451625 5_1:+36890796 None:intergenic
AGTTTATTCCTATCAAGAAA+AGG 0.453926 5_1:-36891718 Msa0729520:CDS
TAAACTTTGAAGAGAGAGAA+TGG 0.462312 5_1:+36892249 None:intergenic
ATGGCTTATAAACAGAGTTC+GGG 0.463892 5_1:+36892268 None:intergenic
AGCAGGTACTTGAGGCGAAC+TGG 0.464004 5_1:+36891066 None:intergenic
CATGCCCTTCAACAACTTGG+CGG 0.464333 5_1:-36890938 Msa0729520:CDS
TCTTTAGCAGATGAAGGGTT+GGG 0.465236 5_1:+36891581 None:intergenic
GATCCCATATTCTTCATTGG+TGG 0.473401 5_1:-36892204 Msa0729520:five_prime_UTR
GTTTATTCCTATCAAGAAAA+GGG 0.474072 5_1:-36891717 Msa0729520:CDS
CACATAAGATGAAATCTGAT+TGG 0.476812 5_1:-36891628 Msa0729520:CDS
GTCGTAGAAGTGAAGAGAAA+TGG 0.477395 5_1:-36891166 Msa0729520:CDS
TTGCATGCCCTTCAACAACT+TGG 0.479053 5_1:-36890941 Msa0729520:CDS
TACAGCTCCTATGTTCTTAG+TGG 0.486260 5_1:-36890352 Msa0729520:CDS
AGAGGAAGCAGCGTCGGTGC+TGG 0.486844 5_1:-36890988 Msa0729520:CDS
CTCTTTAGCAGATGAAGGGT+TGG 0.487382 5_1:+36891580 None:intergenic
GCCACCAAAACAACAGTGTC+AGG 0.487737 5_1:-36890291 Msa0729520:CDS
ATAACTGTTGTTGTAGATGA+AGG 0.491980 5_1:+36890213 None:intergenic
TTGAACCGCCAAGTTGTTGA+AGG 0.494195 5_1:+36890933 None:intergenic
GAGAAAGAGGAAGGTCTCTA+GGG 0.495572 5_1:+36891974 None:intergenic
GCGATTTCCTCTTTGTGGAA+TGG 0.495901 5_1:+36891130 None:intergenic
ACAGTTGTTTGGAACACAAT+CGG 0.495980 5_1:-36891786 Msa0729520:CDS
AGGGTAAGGATGAATATATA+GGG 0.496998 5_1:+36892144 None:intergenic
GTAACAAGCTCAAGAGAAAG+AGG 0.505480 5_1:+36891961 None:intergenic
TTATGTGAATGTGTTGTTGA+GGG 0.513101 5_1:+36892104 None:intergenic
ACAAGAAAAGAAGAAAATCC+AGG 0.515271 5_1:-36892001 Msa0729520:CDS
TGTTGAGGGAAAACAGTTTG+AGG 0.515356 5_1:+36892118 None:intergenic
CTGCACCATATTCTTGTGGT+TGG 0.520262 5_1:+36890316 None:intergenic
GATCCACCAATGAAGAATAT+GGG 0.523876 5_1:+36892201 None:intergenic
GAAGGTCTCTAGGGAAAACC+TGG 0.528167 5_1:+36891983 None:intergenic
TGCCACGCCGAAACAGATCC+GGG 0.529744 5_1:-36890814 Msa0729520:CDS
GGCTAAGATCTGTTCAGTTG+TGG 0.535273 5_1:-36891607 Msa0729520:CDS
GGAAAACAGTTTGAGGAAGA+GGG 0.546520 5_1:+36892125 None:intergenic
ATTTCAACCATTCCACAAAG+AGG 0.547227 5_1:-36891137 Msa0729520:CDS
ACAGCTCCTATGTTCTTAGT+GGG 0.553648 5_1:-36890351 Msa0729520:CDS
GAACAGACATCAACTGATGA+AGG 0.553875 5_1:-36891755 Msa0729520:CDS
ATACCTCTTTAGCAGATGAA+GGG 0.556739 5_1:+36891576 None:intergenic
TCGTGACTATATCCTAGCAT+TGG 0.561341 5_1:-36892025 Msa0729520:CDS
TGAACCGCCAAGTTGTTGAA+GGG 0.566682 5_1:+36890934 None:intergenic
GCTACTGCACCATATTCTTG+TGG 0.569246 5_1:+36890312 None:intergenic
GGTTCAGTAGAACTTGTAGC+AGG 0.569250 5_1:+36891049 None:intergenic
TGAGTGGAACATGATGAGGC+AGG 0.570388 5_1:+36890111 None:intergenic
TTTATGTGAATGTGTTGTTG+AGG 0.578241 5_1:+36892103 None:intergenic
GAGTGGAACATGATGAGGCA+GGG 0.580949 5_1:+36890112 None:intergenic
ATGTTCCCCACTAAGAACAT+AGG 0.582533 5_1:+36890345 None:intergenic
ACAGGTGCATAAATTCCTGT+TGG 0.585331 5_1:+36890246 None:intergenic
CAAGCTCAAGAGAAAGAGGA+AGG 0.593272 5_1:+36891965 None:intergenic
AGTGGAACATGATGAGGCAG+GGG 0.594079 5_1:+36890113 None:intergenic
AACAGGAATTTATGCACCTG+TGG 0.600669 5_1:-36890244 Msa0729520:CDS
GAACTTGTAGCAGGTACTTG+AGG 0.602704 5_1:+36891058 None:intergenic
AATTTCGTCTGCACACGAGA+AGG 0.610345 5_1:-36890407 Msa0729520:CDS
TCTCTTGAGCTTGTTACACA+AGG 0.614804 5_1:-36891955 Msa0729520:intron
AAGGTCAGAGGAAGCAGCGT+CGG 0.617450 5_1:-36890994 Msa0729520:CDS
CGGGAACTAATGAAAGTCGA+TGG 0.628624 5_1:-36890795 Msa0729520:CDS
GGTACTTGAGGCGAACTGGT+TGG 0.629043 5_1:+36891070 None:intergenic
GAATATATAGGGAATGAATG+AGG 0.643737 5_1:+36892155 None:intergenic
TGTTTGTTCAGGATGTACCT+AGG 0.649194 5_1:-36891198 Msa0729520:intron
TGAAGTTGTAGGTGTATGAG+TGG 0.650979 5_1:+36890095 None:intergenic
GTAGAAGTGAAGAGAAATGG+TGG 0.664268 5_1:-36891163 Msa0729520:CDS
GATGAAGGATGTGTAGCCAC+AGG 0.668784 5_1:+36890228 None:intergenic
CAATTGCGATGAAAATGATG+AGG 0.674430 5_1:-36891684 Msa0729520:CDS
TCCTGTTGGAGTAGTAACTG+TGG 0.676951 5_1:+36890260 None:intergenic
CAGCTCCTATGTTCTTAGTG+GGG 0.686803 5_1:-36890350 Msa0729520:CDS
TTCCCGGATCTGTTTCGGCG+TGG 0.690024 5_1:+36890812 None:intergenic
TGTATGAGTGGAACATGATG+AGG 0.702899 5_1:+36890107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTAAAATCAACTT+TGG + chr5_1:36890963-36890982 None:intergenic 10.0%
!! TTATTTATTAAAATCAACTT+TGG + chr5_1:36890963-36890982 None:intergenic 10.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_1:36891153-36891172 Msa0729520:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_1:36891957-36891976 Msa0729520:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_1:36892215-36892234 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_1:36891153-36891172 Msa0729520:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_1:36891957-36891976 Msa0729520:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_1:36892215-36892234 None:intergenic 15.0%
!!! GTGTATATTTTTTTTTCTTC+TGG + chr5_1:36890481-36890500 None:intergenic 20.0%
!! TTAATCATAGAAAATTACAC+TGG - chr5_1:36890882-36890901 Msa0729520:intron 20.0%
!! GACAAGTAAAATTATACAAA+TGG + chr5_1:36891698-36891717 None:intergenic 20.0%
!!! GATATATTTTAAGCTTGATT+TGG + chr5_1:36891810-36891829 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_1:36891935-36891954 Msa0729520:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_1:36892019-36892038 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_1:36892020-36892039 None:intergenic 20.0%
!!! GTGTATATTTTTTTTTCTTC+TGG + chr5_1:36890481-36890500 None:intergenic 20.0%
!! TTAATCATAGAAAATTACAC+TGG - chr5_1:36890882-36890901 Msa0729520:intron 20.0%
!! GACAAGTAAAATTATACAAA+TGG + chr5_1:36891698-36891717 None:intergenic 20.0%
!!! GATATATTTTAAGCTTGATT+TGG + chr5_1:36891810-36891829 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_1:36891935-36891954 Msa0729520:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_1:36892019-36892038 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_1:36892020-36892039 None:intergenic 20.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_1:36890177-36890196 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_1:36890222-36890241 None:intergenic 25.0%
!! CACATTCACATAAATTTTCA+TGG - chr5_1:36890304-36890323 Msa0729520:CDS 25.0%
! CAATGAAAGAAACATTAACT+TGG + chr5_1:36890515-36890534 None:intergenic 25.0%
! CAAGTTAATGTTTCTTTCAT+TGG - chr5_1:36890513-36890532 Msa0729520:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_1:36890680-36890699 Msa0729520:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_1:36890681-36890700 Msa0729520:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_1:36891189-36891208 Msa0729520:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_1:36891549-36891568 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_1:36891672-36891691 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_1:36891963-36891982 Msa0729520:CDS 25.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_1:36890177-36890196 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_1:36890222-36890241 None:intergenic 25.0%
!! CACATTCACATAAATTTTCA+TGG - chr5_1:36890304-36890323 Msa0729520:CDS 25.0%
! CAATGAAAGAAACATTAACT+TGG + chr5_1:36890515-36890534 None:intergenic 25.0%
! CAAGTTAATGTTTCTTTCAT+TGG - chr5_1:36890513-36890532 Msa0729520:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_1:36890680-36890699 Msa0729520:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_1:36890681-36890700 Msa0729520:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_1:36891189-36891208 Msa0729520:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_1:36891549-36891568 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_1:36891672-36891691 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_1:36891963-36891982 Msa0729520:CDS 25.0%
AATGGCTTATAAACAGAGTT+CGG + chr5_1:36890134-36890153 None:intergenic 30.0%
! TAAACTTTGAAGAGAGAGAA+TGG + chr5_1:36890152-36890171 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_1:36890246-36890265 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_1:36890257-36890276 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_1:36890297-36890316 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_1:36890298-36890317 None:intergenic 30.0%
ACAAGAAAAGAAGAAAATCC+AGG - chr5_1:36890397-36890416 Msa0729520:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_1:36890521-36890540 Msa0729520:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_1:36890669-36890688 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_1:36890715-36890734 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_1:36890770-36890789 Msa0729520:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_1:36890860-36890879 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_1:36891726-36891745 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_1:36891772-36891791 None:intergenic 30.0%
CTGTCTAACCTTTAATCTAA+CGG - chr5_1:36891841-36891860 Msa0729520:intron 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_1:36892188-36892207 None:intergenic 30.0%
AATGGCTTATAAACAGAGTT+CGG + chr5_1:36890134-36890153 None:intergenic 30.0%
! TAAACTTTGAAGAGAGAGAA+TGG + chr5_1:36890152-36890171 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_1:36890246-36890265 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_1:36890257-36890276 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_1:36890297-36890316 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_1:36890298-36890317 None:intergenic 30.0%
ACAAGAAAAGAAGAAAATCC+AGG - chr5_1:36890397-36890416 Msa0729520:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_1:36890521-36890540 Msa0729520:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_1:36890669-36890688 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_1:36890715-36890734 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_1:36890770-36890789 Msa0729520:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_1:36890860-36890879 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_1:36891726-36891745 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_1:36891772-36891791 None:intergenic 30.0%
CTGTCTAACCTTTAATCTAA+CGG - chr5_1:36891841-36891860 Msa0729520:intron 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_1:36892188-36892207 None:intergenic 30.0%
ATGGCTTATAAACAGAGTTC+GGG + chr5_1:36890133-36890152 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_1:36890191-36890210 Msa0729520:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_1:36890200-36890219 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_1:36890214-36890233 Msa0729520:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_1:36890258-36890277 None:intergenic 35.0%
! TCTTTTCTTGTTCCAATGCT+AGG + chr5_1:36890388-36890407 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_1:36890612-36890631 Msa0729520:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_1:36890713-36890732 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_1:36890714-36890733 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_1:36890716-36890735 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_1:36890714-36890733 Msa0729520:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_1:36890825-36890844 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_1:36890826-36890845 None:intergenic 35.0%
GAAAATTACACTGGACTGAA+AGG - chr5_1:36890891-36890910 Msa0729520:intron 35.0%
! GAACTGTGAAACTTTTGATC+AGG - chr5_1:36891028-36891047 Msa0729520:CDS 35.0%
GTTTGATAAATTGAGTGACG+CGG + chr5_1:36891061-36891080 None:intergenic 35.0%
!! TCTACGACATTTGTTTTCCT+AGG + chr5_1:36891220-36891239 None:intergenic 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_1:36891261-36891280 Msa0729520:intron 35.0%
TGCAGCAAAAAAGACGATAA+AGG - chr5_1:36891385-36891404 Msa0729520:intron 35.0%
AAAAAGACGATAAAGGTCAG+AGG - chr5_1:36891392-36891411 Msa0729520:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_1:36891634-36891653 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_1:36891638-36891657 Msa0729520:CDS 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_1:36891852-36891871 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_1:36892077-36892096 Msa0729520:CDS 35.0%
ATGGCTTATAAACAGAGTTC+GGG + chr5_1:36890133-36890152 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_1:36890191-36890210 Msa0729520:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_1:36890200-36890219 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_1:36890214-36890233 Msa0729520:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_1:36890258-36890277 None:intergenic 35.0%
! TCTTTTCTTGTTCCAATGCT+AGG + chr5_1:36890388-36890407 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_1:36890612-36890631 Msa0729520:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_1:36890713-36890732 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_1:36890714-36890733 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_1:36890716-36890735 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_1:36890714-36890733 Msa0729520:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_1:36890825-36890844 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_1:36890826-36890845 None:intergenic 35.0%
GAAAATTACACTGGACTGAA+AGG - chr5_1:36890891-36890910 Msa0729520:intron 35.0%
! GAACTGTGAAACTTTTGATC+AGG - chr5_1:36891028-36891047 Msa0729520:CDS 35.0%
GTTTGATAAATTGAGTGACG+CGG + chr5_1:36891061-36891080 None:intergenic 35.0%
!! TCTACGACATTTGTTTTCCT+AGG + chr5_1:36891220-36891239 None:intergenic 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_1:36891261-36891280 Msa0729520:intron 35.0%
TGCAGCAAAAAAGACGATAA+AGG - chr5_1:36891385-36891404 Msa0729520:intron 35.0%
AAAAAGACGATAAAGGTCAG+AGG - chr5_1:36891392-36891411 Msa0729520:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_1:36891634-36891653 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_1:36891638-36891657 Msa0729520:CDS 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_1:36891852-36891871 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_1:36892077-36892096 Msa0729520:CDS 35.0%
GATCCCATATTCTTCATTGG+TGG - chr5_1:36890194-36890213 Msa0729520:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_1:36890201-36890220 None:intergenic 40.0%
GGAAAACAGTTTGAGGAAGA+GGG + chr5_1:36890276-36890295 None:intergenic 40.0%
TGTTGAGGGAAAACAGTTTG+AGG + chr5_1:36890283-36890302 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_1:36890373-36890392 Msa0729520:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_1:36890440-36890459 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_1:36890443-36890462 Msa0729520:intron 40.0%
! CTGTTGCTTACACGTTTCAA+TGG + chr5_1:36890596-36890615 None:intergenic 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_1:36890601-36890620 Msa0729520:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_1:36890643-36890662 Msa0729520:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_1:36890657-36890676 Msa0729520:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_1:36890691-36890710 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_1:36890820-36890839 None:intergenic 40.0%
!!! TTGGTTTTGCCATCCAGAAA+CGG + chr5_1:36890944-36890963 None:intergenic 40.0%
ACATCAAGCAAGCAGACAAT+AGG + chr5_1:36891083-36891102 None:intergenic 40.0%
TGTTTGTTCAGGATGTACCT+AGG - chr5_1:36891200-36891219 Msa0729520:intron 40.0%
GTCGTAGAAGTGAAGAGAAA+TGG - chr5_1:36891232-36891251 Msa0729520:intron 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_1:36891235-36891254 Msa0729520:intron 40.0%
TTGCTGCAGCTTTCAACAAT+TGG + chr5_1:36891373-36891392 None:intergenic 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_1:36891594-36891613 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_1:36891605-36891624 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_1:36891629-36891648 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_1:36891716-36891735 Msa0729520:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_1:36891739-36891758 Msa0729520:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_1:36891750-36891769 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_1:36891759-36891778 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_1:36891874-36891893 None:intergenic 40.0%
TACAGCTCCTATGTTCTTAG+TGG - chr5_1:36892046-36892065 Msa0729520:CDS 40.0%
ACAGCTCCTATGTTCTTAGT+GGG - chr5_1:36892047-36892066 Msa0729520:CDS 40.0%
ATGTTCCCCACTAAGAACAT+AGG + chr5_1:36892056-36892075 None:intergenic 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_1:36892114-36892133 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_1:36892155-36892174 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_1:36892154-36892173 Msa0729520:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_1:36892294-36892313 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_1:36892306-36892325 None:intergenic 40.0%
GATCCCATATTCTTCATTGG+TGG - chr5_1:36890194-36890213 Msa0729520:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_1:36890201-36890220 None:intergenic 40.0%
GGAAAACAGTTTGAGGAAGA+GGG + chr5_1:36890276-36890295 None:intergenic 40.0%
TGTTGAGGGAAAACAGTTTG+AGG + chr5_1:36890283-36890302 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_1:36890373-36890392 Msa0729520:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_1:36890440-36890459 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_1:36890443-36890462 Msa0729520:intron 40.0%
! CTGTTGCTTACACGTTTCAA+TGG + chr5_1:36890596-36890615 None:intergenic 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_1:36890601-36890620 Msa0729520:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_1:36890643-36890662 Msa0729520:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_1:36890657-36890676 Msa0729520:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_1:36890691-36890710 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_1:36890820-36890839 None:intergenic 40.0%
!!! TTGGTTTTGCCATCCAGAAA+CGG + chr5_1:36890944-36890963 None:intergenic 40.0%
ACATCAAGCAAGCAGACAAT+AGG + chr5_1:36891083-36891102 None:intergenic 40.0%
TGTTTGTTCAGGATGTACCT+AGG - chr5_1:36891200-36891219 Msa0729520:intron 40.0%
GTCGTAGAAGTGAAGAGAAA+TGG - chr5_1:36891232-36891251 Msa0729520:intron 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_1:36891235-36891254 Msa0729520:intron 40.0%
TTGCTGCAGCTTTCAACAAT+TGG + chr5_1:36891373-36891392 None:intergenic 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_1:36891594-36891613 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_1:36891605-36891624 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_1:36891629-36891648 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_1:36891716-36891735 Msa0729520:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_1:36891739-36891758 Msa0729520:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_1:36891750-36891769 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_1:36891759-36891778 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_1:36891874-36891893 None:intergenic 40.0%
TACAGCTCCTATGTTCTTAG+TGG - chr5_1:36892046-36892065 Msa0729520:CDS 40.0%
ACAGCTCCTATGTTCTTAGT+GGG - chr5_1:36892047-36892066 Msa0729520:CDS 40.0%
ATGTTCCCCACTAAGAACAT+AGG + chr5_1:36892056-36892075 None:intergenic 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_1:36892114-36892133 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_1:36892155-36892174 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_1:36892154-36892173 Msa0729520:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_1:36892294-36892313 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_1:36892306-36892325 None:intergenic 40.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_1:36890271-36890290 None:intergenic 45.0%
GGGAAAACAGTTTGAGGAAG+AGG + chr5_1:36890277-36890296 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_1:36890427-36890446 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_1:36890428-36890447 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_1:36890436-36890455 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_1:36890621-36890640 Msa0729520:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_1:36890791-36890810 Msa0729520:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_1:36890821-36890840 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_1:36890819-36890838 Msa0729520:intron 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_1:36891271-36891290 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_1:36891343-36891362 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_1:36891352-36891371 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_1:36891457-36891476 Msa0729520:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_1:36891467-36891486 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_1:36891468-36891487 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_1:36891603-36891622 Msa0729520:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_1:36891751-36891770 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_1:36891991-36892010 Msa0729520:CDS 45.0%
CAGCTCCTATGTTCTTAGTG+GGG - chr5_1:36892048-36892067 Msa0729520:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_1:36892085-36892104 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_1:36892089-36892108 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_1:36892111-36892130 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_1:36892137-36892156 Msa0729520:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_1:36892141-36892160 None:intergenic 45.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_1:36890271-36890290 None:intergenic 45.0%
GGGAAAACAGTTTGAGGAAG+AGG + chr5_1:36890277-36890296 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_1:36890427-36890446 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_1:36890428-36890447 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_1:36890436-36890455 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_1:36890621-36890640 Msa0729520:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_1:36890791-36890810 Msa0729520:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_1:36890821-36890840 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_1:36890819-36890838 Msa0729520:intron 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_1:36891271-36891290 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_1:36891343-36891362 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_1:36891352-36891371 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_1:36891457-36891476 Msa0729520:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_1:36891467-36891486 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_1:36891468-36891487 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_1:36891603-36891622 Msa0729520:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_1:36891751-36891770 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_1:36891991-36892010 Msa0729520:CDS 45.0%
CAGCTCCTATGTTCTTAGTG+GGG - chr5_1:36892048-36892067 Msa0729520:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_1:36892085-36892104 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_1:36892089-36892108 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_1:36892111-36892130 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_1:36892137-36892156 Msa0729520:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_1:36892141-36892160 None:intergenic 45.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_1:36890418-36890437 None:intergenic 50.0%
ACACTGGACTGAAAGGCAAG+CGG - chr5_1:36890898-36890917 Msa0729520:intron 50.0%
TGCCATCCAGAAACGGTTAG+CGG + chr5_1:36890937-36890956 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_1:36891276-36891295 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_1:36891460-36891479 Msa0729520:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_1:36892107-36892126 Msa0729520:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_1:36892173-36892192 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_1:36892288-36892307 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_1:36892289-36892308 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_1:36892290-36892309 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_1:36890418-36890437 None:intergenic 50.0%
ACACTGGACTGAAAGGCAAG+CGG - chr5_1:36890898-36890917 Msa0729520:intron 50.0%
TGCCATCCAGAAACGGTTAG+CGG + chr5_1:36890937-36890956 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_1:36891276-36891295 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_1:36891460-36891479 Msa0729520:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_1:36892107-36892126 Msa0729520:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_1:36892173-36892192 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_1:36892288-36892307 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_1:36892289-36892308 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_1:36892290-36892309 None:intergenic 50.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_1:36890928-36890947 Msa0729520:intron 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_1:36890932-36890951 Msa0729520:CDS 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_1:36891331-36891350 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_1:36891335-36891354 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_1:36891404-36891423 Msa0729520:intron 55.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_1:36890928-36890947 Msa0729520:intron 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_1:36890932-36890951 Msa0729520:CDS 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_1:36891331-36891350 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_1:36891335-36891354 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_1:36891404-36891423 Msa0729520:intron 55.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_1:36891583-36891602 Msa0729520:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_1:36891584-36891603 Msa0729520:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_1:36891589-36891608 None:intergenic 60.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_1:36891583-36891602 Msa0729520:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_1:36891584-36891603 Msa0729520:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_1:36891589-36891608 None:intergenic 60.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_1:36891410-36891429 Msa0729520:intron 65.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_1:36891410-36891429 Msa0729520:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 36890086 36892334 36890086 ID=Msa0729520;Name=Msa0729520
chr5_1 mRNA 36890086 36892334 36890086 ID=Msa0729520-mRNA-1;Parent=Msa0729520;Name=Msa0729520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=237|1|0.8|1|1|1|5|0|363
chr5_1 exon 36890086 36890430 36890086 ID=Msa0729520-mRNA-1:exon:11219;Parent=Msa0729520-mRNA-1
chr5_1 exon 36890761 36890837 36890761 ID=Msa0729520-mRNA-1:exon:11218;Parent=Msa0729520-mRNA-1
chr5_1 exon 36890930 36891209 36890930 ID=Msa0729520-mRNA-1:exon:11217;Parent=Msa0729520-mRNA-1
chr5_1 exon 36891580 36891827 36891580 ID=Msa0729520-mRNA-1:exon:11216;Parent=Msa0729520-mRNA-1
chr5_1 exon 36891956 36892334 36891956 ID=Msa0729520-mRNA-1:exon:11215;Parent=Msa0729520-mRNA-1
chr5_1 five_prime_UTR 36892098 36892334 36892098 ID=Msa0729520-mRNA-1:five_prime_utr;Parent=Msa0729520-mRNA-1
chr5_1 CDS 36891956 36892097 36891956 ID=Msa0729520-mRNA-1:cds;Parent=Msa0729520-mRNA-1
chr5_1 CDS 36891580 36891827 36891580 ID=Msa0729520-mRNA-1:cds;Parent=Msa0729520-mRNA-1
chr5_1 CDS 36890930 36891209 36890930 ID=Msa0729520-mRNA-1:cds;Parent=Msa0729520-mRNA-1
chr5_1 CDS 36890761 36890837 36890761 ID=Msa0729520-mRNA-1:cds;Parent=Msa0729520-mRNA-1
chr5_1 CDS 36890086 36890430 36890086 ID=Msa0729520-mRNA-1:cds;Parent=Msa0729520-mRNA-1
Gene Sequence

>Msa0729520

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGAAATTTCGTGACTATATCCTAGCATTGGAACAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATTGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACTGATGAAGGCCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGATGTACCTAGGAAAACAAATGTCGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAATTGTTGAAAGCTGCAGCAAAAAAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAAGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTGGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAAAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAATTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA
Protein sequence

>Msa0729520

MVSMQFDDKMHSHKMKFRDYILALEQEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEDVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPIVESCSKKDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKKFELSENSHSVERIVAHSNSPASSCSTHTPTTSRC*