AlfalfaGEDB | Msa0769860

M. sativa cultivar zhongmu-4 / Msa0769860

KEGG: -
GO: GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769860	sp\|Q9FPE8\|HHO3_ARATH	45.970	335	147	9	1	320	1	316	1.13e-81	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769860	G7JYB4	94.215	363	19	2	1	363	1	361	0.0	686

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TFs/TRs:

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Gene ID	Type	Classification
Msa0769860	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0729520	Msa0769860	0.864735	9.818263e-65	-8.615850e-47
Msa0769860	Msa0848730	0.817426	3.318751e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769860	MtrunA17_Chr5g0422621	94.215	363	19	2	1	363	1	361	0.0	686
Msa0769860	MtrunA17_Chr1g0198601	59.599	349	111	13	10	333	1	344	1.94e-123	360
Msa0769860	MtrunA17_Chr4g0062921	36.915	363	154	15	4	310	7	350	7.63e-52	178
Msa0769860	MtrunA17_Chr4g0045361	34.783	345	144	13	16	296	41	368	7.34e-43	154
Msa0769860	MtrunA17_Chr5g0402631	38.492	252	106	8	19	260	63	275	1.68e-36	135
Msa0769860	MtrunA17_Chr7g0261911	45.783	83	45	0	175	257	238	320	7.56e-14	72.4
Msa0769860	MtrunA17_Chr5g0400241	49.333	75	34	3	193	266	304	375	8.12e-14	72.8
Msa0769860	MtrunA17_Chr1g0175081	35.714	98	57	2	178	274	6	98	2.91e-13	65.5
Msa0769860	MtrunA17_Chr1g0190301	58.929	56	23	0	197	252	173	228	3.40e-13	70.1
Msa0769860	MtrunA17_Chr1g0161431	45.333	75	40	1	193	267	194	267	3.55e-13	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769860	AT1G25550.1	45.970	335	147	9	1	320	1	316	1.15e-82	255
Msa0769860	AT1G68670.1	46.839	348	125	14	1	313	2	324	3.01e-75	237
Msa0769860	AT1G25550.2	50.575	261	115	6	1	249	1	259	4.46e-72	226
Msa0769860	AT3G25790.1	41.551	361	161	12	19	359	20	350	2.98e-62	203
Msa0769860	AT1G13300.1	45.070	284	103	9	20	285	20	268	3.30e-61	200
Msa0769860	AT3G25790.2	43.548	248	102	6	19	249	20	246	3.33e-47	161
Msa0769860	AT2G03500.1	33.934	333	159	9	1	294	18	328	1.73e-45	161
Msa0769860	AT4G37180.1	34.201	269	122	7	11	260	39	271	2.14e-32	124
Msa0769860	AT4G37180.2	33.457	269	131	7	11	260	39	278	2.94e-31	122
Msa0769860	AT4G37180.3	33.721	258	116	7	11	249	39	260	1.20e-27	110

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Find 89 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGGCAAGAATATTAA+AGG	0.309301	5_2:-39539638	None:intergenic
AACAGGAATTTATGCACCTG+TGG	0.600669	5_2:-39537562	Msa0769860:CDS
AAGGTCAGAGGAAGCAGCGT+CGG	0.617450	5_2:-39538312	Msa0769860:CDS
AATGGCTTATAAACAGAGTT+CGG	0.390807	5_2:+39539585	None:intergenic
AATTTCGTCTGCACACGAGA+AGG	0.610345	5_2:-39537725	Msa0769860:CDS
ACAAGAAAAGAAGAAAATCC+AGG	0.515271	5_2:-39539319	Msa0769860:CDS
ACAGCTCCTATGTTCTTAGT+AGG	0.381283	5_2:-39537669	Msa0769860:CDS
ACAGGTGCATAAATTCCTGT+TGG	0.585331	5_2:+39537564	None:intergenic
ACAGTTGTTTGGAACACAAT+CGG	0.495980	5_2:-39539104	Msa0769860:CDS
ACAGTTTGAGGAAGAGGGTA+AGG	0.451178	5_2:+39539448	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGCTTATAAACAGAGTT+CGG	+	chr5_2:39537452-39537471	None:intergenic	30.0%
GAATATATAGGGAATGAATG+AGG	+	chr5_2:39537564-39537583	None:intergenic	30.0%
AGGGTAAGGATGAATATATA+GGG	+	chr5_2:39537575-39537594	None:intergenic	30.0%
ACAAGAAAAGAAGAAAATCC+AGG	-	chr5_2:39537715-39537734	Msa0769860:CDS	30.0%
CACATAAGATGAAATCTGAT+TGG	-	chr5_2:39538088-39538107	Msa0769860:CDS	30.0%
CGTACAAAAAAATTCGACTT+TGG	+	chr5_2:39538178-39538197	None:intergenic	30.0%
TTACTAACCACGTATAATCT+TGG	+	chr5_2:39539044-39539063	None:intergenic	30.0%
AGATGTCTAATCTTCATCTA+CGG	+	chr5_2:39539090-39539109	None:intergenic	30.0%
CTGTCTAACCTTTAATCTAA+CGG	-	chr5_2:39539159-39539178	Msa0769860:intron	30.0%
ATAACTGTTGTTGTAGATGA+AGG	+	chr5_2:39539506-39539525	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	39537404	39539652	39537404	ID=Msa0769860;Name=Msa0769860
chr5_2	mRNA	39537404	39539652	39537404	ID=Msa0769860-mRNA-1;Parent=Msa0769860;Name=Msa0769860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=237\|1\|0.8\|1\|1\|1\|5\|0\|363
chr5_2	exon	39537404	39537748	39537404	ID=Msa0769860-mRNA-1:exon:12683;Parent=Msa0769860-mRNA-1
chr5_2	exon	39538079	39538155	39538079	ID=Msa0769860-mRNA-1:exon:12682;Parent=Msa0769860-mRNA-1
chr5_2	exon	39538248	39538527	39538248	ID=Msa0769860-mRNA-1:exon:12681;Parent=Msa0769860-mRNA-1
chr5_2	exon	39538898	39539145	39538898	ID=Msa0769860-mRNA-1:exon:12680;Parent=Msa0769860-mRNA-1
chr5_2	exon	39539274	39539652	39539274	ID=Msa0769860-mRNA-1:exon:12679;Parent=Msa0769860-mRNA-1
chr5_2	five_prime_UTR	39539416	39539652	39539416	ID=Msa0769860-mRNA-1:five_prime_utr;Parent=Msa0769860-mRNA-1
chr5_2	CDS	39539274	39539415	39539274	ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2	CDS	39538898	39539145	39538898	ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2	CDS	39538248	39538527	39538248	ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2	CDS	39538079	39538155	39538079	ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2	CDS	39537404	39537748	39537404	ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1

Gene Sequence

>Msa0769860

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGAAATTTCGTGACTATATCCTAGCATTGGAACAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATTGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACGGATGAAGGTCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGATGTACCTAGGAAAACAAATGTCGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAATTGTTGAAAGCTGCAGCAAAAAAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAAGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTAGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAAAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAATTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA

Protein sequence

>Msa0769860

MVSMQFDDKMHSHKMKFRDYILALEQEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEDVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPIVESCSKKDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKKFELSENSHSVERIVAHSNSPASSCSTHTPTTSRC*