AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0769860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769860 MtrunA17_Chr5g0422621 94.215 363 19 2 1 363 1 361 0.0 686
Msa0769860 MtrunA17_Chr1g0198601 59.599 349 111 13 10 333 1 344 1.94e-123 360
Msa0769860 MtrunA17_Chr4g0062921 36.915 363 154 15 4 310 7 350 7.63e-52 178
Msa0769860 MtrunA17_Chr4g0045361 34.783 345 144 13 16 296 41 368 7.34e-43 154
Msa0769860 MtrunA17_Chr5g0402631 38.492 252 106 8 19 260 63 275 1.68e-36 135
Msa0769860 MtrunA17_Chr7g0261911 45.783 83 45 0 175 257 238 320 7.56e-14 72.4
Msa0769860 MtrunA17_Chr5g0400241 49.333 75 34 3 193 266 304 375 8.12e-14 72.8
Msa0769860 MtrunA17_Chr1g0175081 35.714 98 57 2 178 274 6 98 2.91e-13 65.5
Msa0769860 MtrunA17_Chr1g0190301 58.929 56 23 0 197 252 173 228 3.40e-13 70.1
Msa0769860 MtrunA17_Chr1g0161431 45.333 75 40 1 193 267 194 267 3.55e-13 70.9
Msa0769860 MtrunA17_Chr2g0291021 58.182 55 23 0 199 253 49 103 3.67e-13 69.7
Msa0769860 MtrunA17_Chr7g0255711 44.156 77 42 1 181 257 73 148 4.45e-13 68.9
Msa0769860 MtrunA17_Chr4g0054981 43.158 95 42 3 173 256 273 366 4.58e-13 70.5
Msa0769860 MtrunA17_Chr4g0067981 41.053 95 43 3 198 290 214 297 4.65e-13 70.5
Msa0769860 MtrunA17_Chr3g0137101 33.333 120 75 2 192 307 191 309 5.08e-13 70.5
Msa0769860 MtrunA17_Chr7g0254981 55.172 58 26 0 196 253 47 104 8.23e-13 68.2
Msa0769860 MtrunA17_Chr7g0274471 58.929 56 23 0 197 252 216 271 1.01e-12 68.9
Msa0769860 MtrunA17_Chr2g0304841 36.207 116 66 4 197 310 211 320 1.15e-12 69.3
Msa0769860 MtrunA17_Chr4g0009901 46.341 82 35 3 185 258 146 226 1.37e-12 67.4
Msa0769860 MtrunA17_Chr2g0294911 28.804 184 120 4 132 310 149 326 2.16e-12 68.2
Msa0769860 MtrunA17_Chr2g0288601 41.111 90 41 2 164 253 48 125 2.31e-12 63.5
Msa0769860 MtrunA17_Chr8g0356501 58.182 55 23 0 199 253 37 91 3.52e-12 67.0
Msa0769860 MtrunA17_Chr7g0243081 41.304 92 48 2 165 252 35 124 5.18e-12 66.2
Msa0769860 MtrunA17_Chr1g0149841 50.820 61 29 1 197 257 189 248 5.44e-12 67.0
Msa0769860 MtrunA17_Chr5g0417521 54.545 55 25 0 199 253 15 69 6.25e-12 66.2
Msa0769860 MtrunA17_Chr4g0031961 42.105 76 43 1 198 273 130 204 6.55e-12 65.9
Msa0769860 MtrunA17_Chr1g0149831 48.387 62 28 1 196 257 125 182 7.26e-12 64.7
Msa0769860 MtrunA17_Chr2g0324891 35.922 103 58 2 154 256 123 217 7.47e-12 66.2
Msa0769860 MtrunA17_Chr2g0310011 58.182 55 23 0 199 253 35 89 8.54e-12 65.9
Msa0769860 MtrunA17_Chr2g0290991 56.364 55 24 0 199 253 39 93 1.17e-11 65.1
Msa0769860 MtrunA17_Chr1g0175091 42.353 85 44 1 169 253 233 312 1.27e-11 65.5
Msa0769860 MtrunA17_Chr1g0210911 44.444 72 33 1 188 252 4 75 1.79e-11 64.7
Msa0769860 MtrunA17_Chr4g0074411 49.180 61 30 1 197 257 199 258 2.17e-11 65.1
Msa0769860 MtrunA17_Chr4g0042451 52.727 55 26 0 199 253 17 71 4.34e-11 63.5
Msa0769860 MtrunA17_Chr2g0321461 52.727 55 26 0 199 253 45 99 5.58e-11 63.5
Msa0769860 MtrunA17_Chr4g0040481 45.161 62 33 1 195 256 154 214 5.63e-11 63.5
Msa0769860 MtrunA17_Chr1g0197171 54.545 55 25 0 199 253 44 98 6.50e-11 62.8
Msa0769860 MtrunA17_Chr8g0366281 42.045 88 47 2 167 252 141 226 7.19e-11 62.8
Msa0769860 MtrunA17_Chr6g0461641 50.909 55 27 0 199 253 42 96 7.31e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769860 AT1G25550.1 45.970 335 147 9 1 320 1 316 1.15e-82 255
Msa0769860 AT1G68670.1 46.839 348 125 14 1 313 2 324 3.01e-75 237
Msa0769860 AT1G25550.2 50.575 261 115 6 1 249 1 259 4.46e-72 226
Msa0769860 AT3G25790.1 41.551 361 161 12 19 359 20 350 2.98e-62 203
Msa0769860 AT1G13300.1 45.070 284 103 9 20 285 20 268 3.30e-61 200
Msa0769860 AT3G25790.2 43.548 248 102 6 19 249 20 246 3.33e-47 161
Msa0769860 AT2G03500.1 33.934 333 159 9 1 294 18 328 1.73e-45 161
Msa0769860 AT4G37180.1 34.201 269 122 7 11 260 39 271 2.14e-32 124
Msa0769860 AT4G37180.2 33.457 269 131 7 11 260 39 278 2.94e-31 122
Msa0769860 AT4G37180.3 33.721 258 116 7 11 249 39 260 1.20e-27 110
Msa0769860 AT1G49560.1 31.900 279 138 10 16 279 27 268 2.04e-25 105
Msa0769860 AT1G49560.2 31.855 248 123 8 16 249 27 242 5.59e-21 91.7
Msa0769860 AT2G25180.1 37.600 125 63 4 197 307 193 316 9.98e-14 72.8
Msa0769860 AT5G58080.1 51.515 66 30 2 193 257 187 251 1.78e-13 72.0
Msa0769860 AT5G05090.1 44.872 78 42 1 180 257 62 138 2.11e-13 70.1
Msa0769860 AT2G01060.1 58.182 55 23 0 199 253 15 69 3.24e-13 69.7
Msa0769860 AT3G10760.1 51.667 60 28 1 198 257 104 162 1.17e-12 68.6
Msa0769860 AT2G06020.1 54.545 55 25 0 199 253 86 140 1.19e-12 68.2
Msa0769860 AT4G28610.1 49.254 67 34 0 186 252 212 278 1.26e-12 68.9
Msa0769860 AT2G40970.1 51.667 60 28 1 198 257 104 162 2.91e-12 66.6
Msa0769860 AT5G18240.2 40.000 90 50 1 168 253 10 99 3.22e-12 67.8
Msa0769860 AT5G18240.3 40.000 90 50 1 168 253 10 99 3.22e-12 67.8
Msa0769860 AT5G18240.5 40.000 90 50 1 168 253 10 99 3.64e-12 67.4
Msa0769860 AT5G18240.1 40.000 90 50 1 168 253 10 99 3.70e-12 67.4
Msa0769860 AT5G18240.4 40.000 90 50 1 168 253 10 99 3.70e-12 67.4
Msa0769860 AT2G20400.2 59.259 54 22 0 199 252 231 284 3.85e-12 67.4
Msa0769860 AT2G20400.1 59.259 54 22 0 199 252 231 284 3.87e-12 67.4
Msa0769860 AT2G01760.1 31.707 164 96 5 198 361 199 346 4.64e-12 67.0
Msa0769860 AT3G16857.3 47.368 76 34 2 187 257 150 224 4.78e-12 67.8
Msa0769860 AT2G01760.2 31.707 164 96 5 198 361 227 374 5.26e-12 67.0
Msa0769860 AT3G16857.2 47.368 76 34 2 187 257 220 294 5.42e-12 67.8
Msa0769860 AT4G13640.2 58.182 55 23 0 199 253 37 91 5.56e-12 66.2
Msa0769860 AT5G59570.2 38.462 104 44 3 154 257 115 198 5.70e-12 66.2
Msa0769860 AT5G59570.1 38.462 104 44 3 154 257 115 198 5.70e-12 66.2
Msa0769860 AT4G13640.1 58.182 55 23 0 199 253 37 91 6.12e-12 66.2
Msa0769860 AT2G01760.3 31.707 164 96 5 198 361 134 281 6.41e-12 66.2
Msa0769860 AT3G16857.1 47.368 76 34 2 187 257 220 294 6.87e-12 67.4
Msa0769860 AT3G24120.1 58.182 55 23 0 199 253 41 95 7.42e-12 65.9
Msa0769860 AT3G24120.2 58.182 55 23 0 199 253 41 95 7.89e-12 65.9
Msa0769860 AT4G18020.8 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT4G18020.11 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT4G18020.4 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT4G18020.5 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT4G18020.10 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT4G18020.7 43.820 89 45 3 182 268 277 362 1.29e-11 66.2
Msa0769860 AT3G46640.3 29.825 171 95 4 123 273 52 217 1.39e-11 65.5
Msa0769860 AT1G79430.2 58.182 55 23 0 199 253 34 88 1.41e-11 65.5
Msa0769860 AT3G46640.2 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0769860 AT3G46640.1 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0769860 AT4G18020.3 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0769860 AT4G18020.2 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0769860 AT4G18020.1 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0769860 AT4G18020.6 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0769860 AT4G18020.9 43.820 89 45 3 182 268 277 362 1.53e-11 65.9
Msa0769860 AT3G12730.1 56.364 55 24 0 199 253 23 77 1.74e-11 63.9
Msa0769860 AT3G04030.1 41.860 86 46 1 172 253 14 99 2.01e-11 65.1
Msa0769860 AT4G04605.1 53.846 52 24 0 201 252 16 67 2.07e-11 63.5
Msa0769860 AT3G04030.3 41.860 86 46 1 172 253 14 99 2.17e-11 65.1
Msa0769860 AT3G04450.3 55.556 54 24 0 199 252 238 291 2.23e-11 64.7
Msa0769860 AT5G29000.4 55.556 54 24 0 199 252 231 284 3.93e-11 63.9
Msa0769860 AT3G04450.4 55.556 54 24 0 199 252 198 251 4.00e-11 64.3
Msa0769860 AT3G04450.2 55.556 54 24 0 199 252 198 251 4.00e-11 64.3
Msa0769860 AT3G04450.1 55.556 54 24 0 199 252 238 291 4.17e-11 64.3
Msa0769860 AT1G49190.1 38.462 78 45 1 186 260 202 279 5.00e-11 63.9
Msa0769860 AT5G06800.3 50.909 55 27 0 199 253 192 246 5.09e-11 63.2
Msa0769860 AT3G13040.3 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0769860 AT3G13040.1 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0769860 AT3G13040.2 43.590 78 43 1 176 253 219 295 8.53e-11 63.5
Msa0769860 AT5G29000.2 55.556 54 24 0 199 252 231 284 8.58e-11 63.5
Msa0769860 AT5G29000.1 55.556 54 24 0 199 252 188 241 8.96e-11 63.2
Msa0769860 AT5G29000.3 55.556 54 24 0 199 252 188 241 8.96e-11 63.2
Msa0769860 AT4G17695.1 51.724 58 28 0 195 252 160 217 9.53e-11 62.8

Find 89 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAACAGAATCAAATTT+TGG 0.168091 5_2:+39539542 None:intergenic
GGATCCACCAATGAAGAATA+TGG 0.224409 5_2:+39539518 None:intergenic
TTAGAATTGTTGTGAATTAT+TGG 0.251586 5_2:+39537699 None:intergenic
TTCTCCTGACACTGTTGTTT+TGG 0.263091 5_2:+39537605 None:intergenic
AAACCAGGCAAGAATATTAA+AGG 0.309301 5_2:-39539638 None:intergenic
TTGCTGCAGCTTTCAACAAT+TGG 0.314561 5_2:+39538346 None:intergenic
CAGCAGCGATTTCCTCTTTG+TGG 0.314629 5_2:+39538443 None:intergenic
TTTCAGCATCTTGAAGTTGT+AGG 0.327142 5_2:+39537402 None:intergenic
ATTAGTTCCCGGATCTGTTT+CGG 0.330999 5_2:+39538125 None:intergenic
TAGAATTGTTGTGAATTATT+GGG 0.348297 5_2:+39537700 None:intergenic
GAGGGTAAGGATGAATATAT+AGG 0.358023 5_2:+39539461 None:intergenic
GGGAAAACAGTTTGAGGAAG+AGG 0.359503 5_2:+39539442 None:intergenic
TGAAGTCAAAAGTCATTTGC+AGG 0.374794 5_2:-39538078 Msa0769860:intron
ACAGCTCCTATGTTCTTAGT+AGG 0.381283 5_2:-39537669 Msa0769860:CDS
AATGGCTTATAAACAGAGTT+CGG 0.390807 5_2:+39539585 None:intergenic
ACGTGTAAGCAACAGTTGTT+TGG 0.397960 5_2:-39539115 Msa0769860:CDS
AGAGAAAGAGGAAGGTCTCT+AGG 0.412125 5_2:+39539291 None:intergenic
TCAGATCCCATATTCTTCAT+TGG 0.415956 5_2:-39539525 Msa0769860:five_prime_UTR
TATGTCCAACCACAAGAATA+TGG 0.427221 5_2:-39537639 Msa0769860:CDS
CTGTTGCTTACACGTTTCAA+TGG 0.431651 5_2:+39539123 None:intergenic
TATACCTCTTTAGCAGATGA+AGG 0.432154 5_2:+39538893 None:intergenic
CTGCCACGCCGAAACAGATC+CGG 0.438655 5_2:-39538133 Msa0769860:CDS
TGGAACACAATCGGAGTGTT+CGG 0.442544 5_2:-39539095 Msa0769860:CDS
ACCACAGTTACTACTCCAAC+AGG 0.442991 5_2:-39537579 Msa0769860:CDS
CAACCCTTCATCTGCTAAAG+AGG 0.450187 5_2:-39538897 Msa0769860:intron
ACAGTTTGAGGAAGAGGGTA+AGG 0.451178 5_2:+39539448 None:intergenic
CATCGACTTTCATTAGTTCC+CGG 0.451625 5_2:+39538114 None:intergenic
AGTTTATTCCTATCAAGAAA+AGG 0.453926 5_2:-39539036 Msa0769860:CDS
TAAACTTTGAAGAGAGAGAA+TGG 0.462312 5_2:+39539567 None:intergenic
ATGGCTTATAAACAGAGTTC+GGG 0.463892 5_2:+39539586 None:intergenic
AGCAGGTACTTGAGGCGAAC+TGG 0.464004 5_2:+39538384 None:intergenic
CATGCCCTTCAACAACTTGG+CGG 0.464333 5_2:-39538256 Msa0769860:CDS
TCTTTAGCAGATGAAGGGTT+GGG 0.465236 5_2:+39538899 None:intergenic
GATCCCATATTCTTCATTGG+TGG 0.473401 5_2:-39539522 Msa0769860:five_prime_UTR
GTTTATTCCTATCAAGAAAA+GGG 0.474072 5_2:-39539035 Msa0769860:CDS
CACATAAGATGAAATCTGAT+TGG 0.476812 5_2:-39538946 Msa0769860:CDS
GTCGTAGAAGTGAAGAGAAA+TGG 0.477395 5_2:-39538484 Msa0769860:CDS
TTGCATGCCCTTCAACAACT+TGG 0.479053 5_2:-39538259 Msa0769860:CDS
AGAGGAAGCAGCGTCGGTGC+TGG 0.486844 5_2:-39538306 Msa0769860:CDS
CTCTTTAGCAGATGAAGGGT+TGG 0.487382 5_2:+39538898 None:intergenic
GCCACCAAAACAACAGTGTC+AGG 0.487737 5_2:-39537609 Msa0769860:CDS
ATAACTGTTGTTGTAGATGA+AGG 0.491980 5_2:+39537531 None:intergenic
TTGAACCGCCAAGTTGTTGA+AGG 0.494195 5_2:+39538251 None:intergenic
GAGAAAGAGGAAGGTCTCTA+GGG 0.495572 5_2:+39539292 None:intergenic
GCGATTTCCTCTTTGTGGAA+TGG 0.495901 5_2:+39538448 None:intergenic
ACAGTTGTTTGGAACACAAT+CGG 0.495980 5_2:-39539104 Msa0769860:CDS
AGGGTAAGGATGAATATATA+GGG 0.496998 5_2:+39539462 None:intergenic
GTAACAAGCTCAAGAGAAAG+AGG 0.505480 5_2:+39539279 None:intergenic
TTATGTGAATGTGTTGTTGA+GGG 0.513101 5_2:+39539422 None:intergenic
ACAAGAAAAGAAGAAAATCC+AGG 0.515271 5_2:-39539319 Msa0769860:CDS
TGTTGAGGGAAAACAGTTTG+AGG 0.515356 5_2:+39539436 None:intergenic
CTGCACCATATTCTTGTGGT+TGG 0.520262 5_2:+39537634 None:intergenic
GATCCACCAATGAAGAATAT+GGG 0.523876 5_2:+39539519 None:intergenic
GAAGGTCTCTAGGGAAAACC+TGG 0.528167 5_2:+39539301 None:intergenic
TGCCACGCCGAAACAGATCC+GGG 0.529744 5_2:-39538132 Msa0769860:CDS
GGCTAAGATCTGTTCAGTTG+TGG 0.535273 5_2:-39538925 Msa0769860:CDS
GGAAAACAGTTTGAGGAAGA+GGG 0.546520 5_2:+39539443 None:intergenic
ATTTCAACCATTCCACAAAG+AGG 0.547227 5_2:-39538455 Msa0769860:CDS
CAGCTCCTATGTTCTTAGTA+GGG 0.547398 5_2:-39537668 Msa0769860:CDS
GAACAGACATCAACGGATGA+AGG 0.553205 5_2:-39539073 Msa0769860:CDS
ATACCTCTTTAGCAGATGAA+GGG 0.556739 5_2:+39538894 None:intergenic
TCGTGACTATATCCTAGCAT+TGG 0.561341 5_2:-39539343 Msa0769860:CDS
TGAACCGCCAAGTTGTTGAA+GGG 0.566682 5_2:+39538252 None:intergenic
GCTACTGCACCATATTCTTG+TGG 0.569246 5_2:+39537630 None:intergenic
GGTTCAGTAGAACTTGTAGC+AGG 0.569250 5_2:+39538367 None:intergenic
TGAGTGGAACATGATGAGGC+AGG 0.570388 5_2:+39537429 None:intergenic
TTTATGTGAATGTGTTGTTG+AGG 0.578241 5_2:+39539421 None:intergenic
GAGTGGAACATGATGAGGCA+GGG 0.580949 5_2:+39537430 None:intergenic
ACAGGTGCATAAATTCCTGT+TGG 0.585331 5_2:+39537564 None:intergenic
CAAGCTCAAGAGAAAGAGGA+AGG 0.593272 5_2:+39539283 None:intergenic
ATGTTCCCTACTAAGAACAT+AGG 0.593541 5_2:+39537663 None:intergenic
AGTGGAACATGATGAGGCAG+GGG 0.594079 5_2:+39537431 None:intergenic
AACAGGAATTTATGCACCTG+TGG 0.600669 5_2:-39537562 Msa0769860:CDS
GAACTTGTAGCAGGTACTTG+AGG 0.602704 5_2:+39538376 None:intergenic
AATTTCGTCTGCACACGAGA+AGG 0.610345 5_2:-39537725 Msa0769860:CDS
TCTCTTGAGCTTGTTACACA+AGG 0.614804 5_2:-39539273 Msa0769860:intron
AAGGTCAGAGGAAGCAGCGT+CGG 0.617450 5_2:-39538312 Msa0769860:CDS
CGGGAACTAATGAAAGTCGA+TGG 0.628624 5_2:-39538113 Msa0769860:CDS
GGTACTTGAGGCGAACTGGT+TGG 0.629043 5_2:+39538388 None:intergenic
GAATATATAGGGAATGAATG+AGG 0.643737 5_2:+39539473 None:intergenic
TGTTTGTTCAGGATGTACCT+AGG 0.649194 5_2:-39538516 Msa0769860:intron
TGAAGTTGTAGGTGTATGAG+TGG 0.650979 5_2:+39537413 None:intergenic
GTAGAAGTGAAGAGAAATGG+TGG 0.664268 5_2:-39538481 Msa0769860:CDS
GATGAAGGATGTGTAGCCAC+AGG 0.668784 5_2:+39537546 None:intergenic
GTGTTCGGAACAGACATCAA+CGG 0.672963 5_2:-39539080 Msa0769860:CDS
CAATTGCGATGAAAATGATG+AGG 0.674430 5_2:-39539002 Msa0769860:CDS
TCCTGTTGGAGTAGTAACTG+TGG 0.676951 5_2:+39537578 None:intergenic
TTCCCGGATCTGTTTCGGCG+TGG 0.690024 5_2:+39538130 None:intergenic
TGTATGAGTGGAACATGATG+AGG 0.702899 5_2:+39537425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTAAAATCAACTT+TGG + chr5_2:39538281-39538300 None:intergenic 10.0%
!! TTATTTATTAAAATCAACTT+TGG + chr5_2:39538281-39538300 None:intergenic 10.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_2:39538471-39538490 Msa0769860:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_2:39539275-39539294 Msa0769860:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_2:39539533-39539552 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_2:39538471-39538490 Msa0769860:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_2:39539275-39539294 Msa0769860:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_2:39539533-39539552 None:intergenic 15.0%
!!! GTGTATATTTTTTTTTCTTC+TGG + chr5_2:39537799-39537818 None:intergenic 20.0%
!! TTAATCATAGAAAATTACAC+TGG - chr5_2:39538200-39538219 Msa0769860:intron 20.0%
!! GACAAGTAAAATTATACAAA+TGG + chr5_2:39539016-39539035 None:intergenic 20.0%
!!! GATATATTTTAAGCTTGATT+TGG + chr5_2:39539128-39539147 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_2:39539253-39539272 Msa0769860:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_2:39539337-39539356 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_2:39539338-39539357 None:intergenic 20.0%
!!! GTGTATATTTTTTTTTCTTC+TGG + chr5_2:39537799-39537818 None:intergenic 20.0%
!! TTAATCATAGAAAATTACAC+TGG - chr5_2:39538200-39538219 Msa0769860:intron 20.0%
!! GACAAGTAAAATTATACAAA+TGG + chr5_2:39539016-39539035 None:intergenic 20.0%
!!! GATATATTTTAAGCTTGATT+TGG + chr5_2:39539128-39539147 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_2:39539253-39539272 Msa0769860:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_2:39539337-39539356 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_2:39539338-39539357 None:intergenic 20.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_2:39537495-39537514 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_2:39537540-39537559 None:intergenic 25.0%
!! CACATTCACATAAATTTTCA+TGG - chr5_2:39537622-39537641 Msa0769860:CDS 25.0%
! CAATGAAAGAAACATTAACT+TGG + chr5_2:39537833-39537852 None:intergenic 25.0%
! CAAGTTAATGTTTCTTTCAT+TGG - chr5_2:39537831-39537850 Msa0769860:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_2:39537998-39538017 Msa0769860:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_2:39537999-39538018 Msa0769860:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_2:39538507-39538526 Msa0769860:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_2:39538867-39538886 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_2:39538990-39539009 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_2:39539281-39539300 Msa0769860:CDS 25.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_2:39537495-39537514 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_2:39537540-39537559 None:intergenic 25.0%
!! CACATTCACATAAATTTTCA+TGG - chr5_2:39537622-39537641 Msa0769860:CDS 25.0%
! CAATGAAAGAAACATTAACT+TGG + chr5_2:39537833-39537852 None:intergenic 25.0%
! CAAGTTAATGTTTCTTTCAT+TGG - chr5_2:39537831-39537850 Msa0769860:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_2:39537998-39538017 Msa0769860:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_2:39537999-39538018 Msa0769860:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_2:39538507-39538526 Msa0769860:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_2:39538867-39538886 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_2:39538990-39539009 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_2:39539281-39539300 Msa0769860:CDS 25.0%
AATGGCTTATAAACAGAGTT+CGG + chr5_2:39537452-39537471 None:intergenic 30.0%
! TAAACTTTGAAGAGAGAGAA+TGG + chr5_2:39537470-39537489 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_2:39537564-39537583 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_2:39537575-39537594 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_2:39537615-39537634 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_2:39537616-39537635 None:intergenic 30.0%
ACAAGAAAAGAAGAAAATCC+AGG - chr5_2:39537715-39537734 Msa0769860:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_2:39537839-39537858 Msa0769860:intron 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_2:39538033-39538052 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_2:39538088-39538107 Msa0769860:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_2:39538178-39538197 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_2:39539044-39539063 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_2:39539090-39539109 None:intergenic 30.0%
CTGTCTAACCTTTAATCTAA+CGG - chr5_2:39539159-39539178 Msa0769860:intron 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_2:39539506-39539525 None:intergenic 30.0%
AATGGCTTATAAACAGAGTT+CGG + chr5_2:39537452-39537471 None:intergenic 30.0%
! TAAACTTTGAAGAGAGAGAA+TGG + chr5_2:39537470-39537489 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_2:39537564-39537583 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_2:39537575-39537594 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_2:39537615-39537634 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_2:39537616-39537635 None:intergenic 30.0%
ACAAGAAAAGAAGAAAATCC+AGG - chr5_2:39537715-39537734 Msa0769860:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_2:39537839-39537858 Msa0769860:intron 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_2:39538033-39538052 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_2:39538088-39538107 Msa0769860:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_2:39538178-39538197 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_2:39539044-39539063 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_2:39539090-39539109 None:intergenic 30.0%
CTGTCTAACCTTTAATCTAA+CGG - chr5_2:39539159-39539178 Msa0769860:intron 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_2:39539506-39539525 None:intergenic 30.0%
ATGGCTTATAAACAGAGTTC+GGG + chr5_2:39537451-39537470 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_2:39537509-39537528 Msa0769860:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_2:39537518-39537537 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_2:39537532-39537551 Msa0769860:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_2:39537576-39537595 None:intergenic 35.0%
! TCTTTTCTTGTTCCAATGCT+AGG + chr5_2:39537706-39537725 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_2:39537930-39537949 Msa0769860:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_2:39538031-39538050 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_2:39538032-39538051 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_2:39538034-39538053 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_2:39538032-39538051 Msa0769860:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_2:39538143-39538162 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_2:39538144-39538163 None:intergenic 35.0%
GAAAATTACACTGGACTGAA+AGG - chr5_2:39538209-39538228 Msa0769860:intron 35.0%
! GAACTGTGAAACTTTTGATC+AGG - chr5_2:39538346-39538365 Msa0769860:CDS 35.0%
GTTTGATAAATTGAGTGACG+CGG + chr5_2:39538379-39538398 None:intergenic 35.0%
!! TCTACGACATTTGTTTTCCT+AGG + chr5_2:39538538-39538557 None:intergenic 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_2:39538579-39538598 Msa0769860:intron 35.0%
TGCAGCAAAAAAGACGATAA+AGG - chr5_2:39538703-39538722 Msa0769860:intron 35.0%
AAAAAGACGATAAAGGTCAG+AGG - chr5_2:39538710-39538729 Msa0769860:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_2:39538952-39538971 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_2:39538956-39538975 Msa0769860:CDS 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_2:39539170-39539189 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_2:39539374-39539393 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_2:39539395-39539414 Msa0769860:CDS 35.0%
ATGGCTTATAAACAGAGTTC+GGG + chr5_2:39537451-39537470 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_2:39537509-39537528 Msa0769860:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_2:39537518-39537537 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_2:39537532-39537551 Msa0769860:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_2:39537576-39537595 None:intergenic 35.0%
! TCTTTTCTTGTTCCAATGCT+AGG + chr5_2:39537706-39537725 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_2:39537930-39537949 Msa0769860:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_2:39538031-39538050 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_2:39538032-39538051 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_2:39538034-39538053 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_2:39538032-39538051 Msa0769860:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_2:39538143-39538162 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_2:39538144-39538163 None:intergenic 35.0%
GAAAATTACACTGGACTGAA+AGG - chr5_2:39538209-39538228 Msa0769860:intron 35.0%
! GAACTGTGAAACTTTTGATC+AGG - chr5_2:39538346-39538365 Msa0769860:CDS 35.0%
GTTTGATAAATTGAGTGACG+CGG + chr5_2:39538379-39538398 None:intergenic 35.0%
!! TCTACGACATTTGTTTTCCT+AGG + chr5_2:39538538-39538557 None:intergenic 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_2:39538579-39538598 Msa0769860:intron 35.0%
TGCAGCAAAAAAGACGATAA+AGG - chr5_2:39538703-39538722 Msa0769860:intron 35.0%
AAAAAGACGATAAAGGTCAG+AGG - chr5_2:39538710-39538729 Msa0769860:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_2:39538952-39538971 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_2:39538956-39538975 Msa0769860:CDS 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_2:39539170-39539189 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_2:39539374-39539393 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_2:39539395-39539414 Msa0769860:CDS 35.0%
GATCCCATATTCTTCATTGG+TGG - chr5_2:39537512-39537531 Msa0769860:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_2:39537519-39537538 None:intergenic 40.0%
GGAAAACAGTTTGAGGAAGA+GGG + chr5_2:39537594-39537613 None:intergenic 40.0%
TGTTGAGGGAAAACAGTTTG+AGG + chr5_2:39537601-39537620 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_2:39537691-39537710 Msa0769860:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_2:39537758-39537777 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_2:39537761-39537780 Msa0769860:intron 40.0%
! CTGTTGCTTACACGTTTCAA+TGG + chr5_2:39537914-39537933 None:intergenic 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_2:39537919-39537938 Msa0769860:intron 40.0%
!!! GGATGAAGGTCTTGTTTTTG+AGG - chr5_2:39537975-39537994 Msa0769860:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_2:39538009-39538028 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_2:39538138-39538157 None:intergenic 40.0%
!!! TTGGTTTTGCCATCCAGAAA+CGG + chr5_2:39538262-39538281 None:intergenic 40.0%
ACATCAAGCAAGCAGACAAT+AGG + chr5_2:39538401-39538420 None:intergenic 40.0%
TGTTTGTTCAGGATGTACCT+AGG - chr5_2:39538518-39538537 Msa0769860:intron 40.0%
GTCGTAGAAGTGAAGAGAAA+TGG - chr5_2:39538550-39538569 Msa0769860:intron 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_2:39538553-39538572 Msa0769860:intron 40.0%
TTGCTGCAGCTTTCAACAAT+TGG + chr5_2:39538691-39538710 None:intergenic 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_2:39538912-39538931 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_2:39538923-39538942 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_2:39538947-39538966 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_2:39539034-39539053 Msa0769860:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_2:39539057-39539076 Msa0769860:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_2:39539068-39539087 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_2:39539077-39539096 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_2:39539192-39539211 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_2:39539365-39539384 Msa0769860:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_2:39539366-39539385 Msa0769860:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_2:39539432-39539451 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_2:39539473-39539492 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_2:39539472-39539491 Msa0769860:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_2:39539612-39539631 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_2:39539624-39539643 None:intergenic 40.0%
GATCCCATATTCTTCATTGG+TGG - chr5_2:39537512-39537531 Msa0769860:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_2:39537519-39537538 None:intergenic 40.0%
GGAAAACAGTTTGAGGAAGA+GGG + chr5_2:39537594-39537613 None:intergenic 40.0%
TGTTGAGGGAAAACAGTTTG+AGG + chr5_2:39537601-39537620 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_2:39537691-39537710 Msa0769860:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_2:39537758-39537777 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_2:39537761-39537780 Msa0769860:intron 40.0%
! CTGTTGCTTACACGTTTCAA+TGG + chr5_2:39537914-39537933 None:intergenic 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_2:39537919-39537938 Msa0769860:intron 40.0%
!!! GGATGAAGGTCTTGTTTTTG+AGG - chr5_2:39537975-39537994 Msa0769860:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_2:39538009-39538028 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_2:39538138-39538157 None:intergenic 40.0%
!!! TTGGTTTTGCCATCCAGAAA+CGG + chr5_2:39538262-39538281 None:intergenic 40.0%
ACATCAAGCAAGCAGACAAT+AGG + chr5_2:39538401-39538420 None:intergenic 40.0%
TGTTTGTTCAGGATGTACCT+AGG - chr5_2:39538518-39538537 Msa0769860:intron 40.0%
GTCGTAGAAGTGAAGAGAAA+TGG - chr5_2:39538550-39538569 Msa0769860:intron 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_2:39538553-39538572 Msa0769860:intron 40.0%
TTGCTGCAGCTTTCAACAAT+TGG + chr5_2:39538691-39538710 None:intergenic 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_2:39538912-39538931 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_2:39538923-39538942 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_2:39538947-39538966 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_2:39539034-39539053 Msa0769860:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_2:39539057-39539076 Msa0769860:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_2:39539068-39539087 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_2:39539077-39539096 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_2:39539192-39539211 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_2:39539365-39539384 Msa0769860:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_2:39539366-39539385 Msa0769860:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_2:39539432-39539451 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_2:39539473-39539492 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_2:39539472-39539491 Msa0769860:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_2:39539612-39539631 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_2:39539624-39539643 None:intergenic 40.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_2:39537589-39537608 None:intergenic 45.0%
GGGAAAACAGTTTGAGGAAG+AGG + chr5_2:39537595-39537614 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_2:39537745-39537764 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_2:39537746-39537765 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_2:39537754-39537773 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_2:39537939-39537958 Msa0769860:intron 45.0%
GTGTTCGGAACAGACATCAA+CGG - chr5_2:39537954-39537973 Msa0769860:intron 45.0%
GAACAGACATCAACGGATGA+AGG - chr5_2:39537961-39537980 Msa0769860:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_2:39538109-39538128 Msa0769860:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_2:39538139-39538158 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_2:39538137-39538156 Msa0769860:intron 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_2:39538589-39538608 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_2:39538661-39538680 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_2:39538670-39538689 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_2:39538775-39538794 Msa0769860:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_2:39538785-39538804 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_2:39538786-39538805 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_2:39538921-39538940 Msa0769860:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_2:39539069-39539088 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_2:39539309-39539328 Msa0769860:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_2:39539403-39539422 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_2:39539407-39539426 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_2:39539429-39539448 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_2:39539455-39539474 Msa0769860:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_2:39539459-39539478 None:intergenic 45.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_2:39537589-39537608 None:intergenic 45.0%
GGGAAAACAGTTTGAGGAAG+AGG + chr5_2:39537595-39537614 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_2:39537745-39537764 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_2:39537746-39537765 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_2:39537754-39537773 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_2:39537939-39537958 Msa0769860:intron 45.0%
GTGTTCGGAACAGACATCAA+CGG - chr5_2:39537954-39537973 Msa0769860:intron 45.0%
GAACAGACATCAACGGATGA+AGG - chr5_2:39537961-39537980 Msa0769860:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_2:39538109-39538128 Msa0769860:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_2:39538139-39538158 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_2:39538137-39538156 Msa0769860:intron 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_2:39538589-39538608 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_2:39538661-39538680 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_2:39538670-39538689 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_2:39538775-39538794 Msa0769860:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_2:39538785-39538804 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_2:39538786-39538805 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_2:39538921-39538940 Msa0769860:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_2:39539069-39539088 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_2:39539309-39539328 Msa0769860:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_2:39539403-39539422 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_2:39539407-39539426 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_2:39539429-39539448 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_2:39539455-39539474 Msa0769860:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_2:39539459-39539478 None:intergenic 45.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_2:39537736-39537755 None:intergenic 50.0%
ACACTGGACTGAAAGGCAAG+CGG - chr5_2:39538216-39538235 Msa0769860:intron 50.0%
TGCCATCCAGAAACGGTTAG+CGG + chr5_2:39538255-39538274 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_2:39538594-39538613 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_2:39538778-39538797 Msa0769860:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_2:39539425-39539444 Msa0769860:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_2:39539491-39539510 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_2:39539606-39539625 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_2:39539607-39539626 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_2:39539608-39539627 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_2:39537736-39537755 None:intergenic 50.0%
ACACTGGACTGAAAGGCAAG+CGG - chr5_2:39538216-39538235 Msa0769860:intron 50.0%
TGCCATCCAGAAACGGTTAG+CGG + chr5_2:39538255-39538274 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_2:39538594-39538613 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_2:39538778-39538797 Msa0769860:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_2:39539425-39539444 Msa0769860:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_2:39539491-39539510 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_2:39539606-39539625 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_2:39539607-39539626 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_2:39539608-39539627 None:intergenic 50.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_2:39538246-39538265 Msa0769860:intron 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_2:39538250-39538269 Msa0769860:CDS 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_2:39538649-39538668 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_2:39538653-39538672 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_2:39538722-39538741 Msa0769860:intron 55.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_2:39538246-39538265 Msa0769860:intron 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_2:39538250-39538269 Msa0769860:CDS 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_2:39538649-39538668 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_2:39538653-39538672 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_2:39538722-39538741 Msa0769860:intron 55.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_2:39538901-39538920 Msa0769860:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_2:39538902-39538921 Msa0769860:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_2:39538907-39538926 None:intergenic 60.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_2:39538901-39538920 Msa0769860:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_2:39538902-39538921 Msa0769860:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_2:39538907-39538926 None:intergenic 60.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_2:39538728-39538747 Msa0769860:intron 65.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_2:39538728-39538747 Msa0769860:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 39537404 39539652 39537404 ID=Msa0769860;Name=Msa0769860
chr5_2 mRNA 39537404 39539652 39537404 ID=Msa0769860-mRNA-1;Parent=Msa0769860;Name=Msa0769860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=237|1|0.8|1|1|1|5|0|363
chr5_2 exon 39537404 39537748 39537404 ID=Msa0769860-mRNA-1:exon:12683;Parent=Msa0769860-mRNA-1
chr5_2 exon 39538079 39538155 39538079 ID=Msa0769860-mRNA-1:exon:12682;Parent=Msa0769860-mRNA-1
chr5_2 exon 39538248 39538527 39538248 ID=Msa0769860-mRNA-1:exon:12681;Parent=Msa0769860-mRNA-1
chr5_2 exon 39538898 39539145 39538898 ID=Msa0769860-mRNA-1:exon:12680;Parent=Msa0769860-mRNA-1
chr5_2 exon 39539274 39539652 39539274 ID=Msa0769860-mRNA-1:exon:12679;Parent=Msa0769860-mRNA-1
chr5_2 five_prime_UTR 39539416 39539652 39539416 ID=Msa0769860-mRNA-1:five_prime_utr;Parent=Msa0769860-mRNA-1
chr5_2 CDS 39539274 39539415 39539274 ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2 CDS 39538898 39539145 39538898 ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2 CDS 39538248 39538527 39538248 ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2 CDS 39538079 39538155 39538079 ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
chr5_2 CDS 39537404 39537748 39537404 ID=Msa0769860-mRNA-1:cds;Parent=Msa0769860-mRNA-1
Gene Sequence

>Msa0769860

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGAAATTTCGTGACTATATCCTAGCATTGGAACAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATTGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACGGATGAAGGTCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGATGTACCTAGGAAAACAAATGTCGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAATTGTTGAAAGCTGCAGCAAAAAAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAAGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTAGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAAAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAATTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA
Protein sequence

>Msa0769860

MVSMQFDDKMHSHKMKFRDYILALEQEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEDVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPIVESCSKKDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKKFELSENSHSVERIVAHSNSPASSCSTHTPTTSRC*