Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730420 | XP_019430149.1 | 60.406 | 197 | 76 | 2 | 3 | 199 | 15 | 209 | 1.72e-76 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730420 | sp|S4TE15|TE3_HUMLU | 61.688 | 154 | 57 | 2 | 46 | 199 | 56 | 207 | 1.82e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730420 | G7K1I9 | 62.176 | 193 | 71 | 2 | 7 | 199 | 22 | 212 | 8.36e-75 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0730420 | Msa0999340 | 0.806792 | 6.925657e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730420 | MtrunA17_Chr5g0423471 | 62.176 | 193 | 71 | 2 | 7 | 199 | 22 | 212 | 1.61e-78 | 233 |
| Msa0730420 | MtrunA17_Chr5g0423421 | 67.949 | 78 | 25 | 0 | 115 | 192 | 1 | 78 | 1.52e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730420 | AT1G68260.1 | 60.274 | 146 | 57 | 1 | 48 | 193 | 39 | 183 | 2.31e-62 | 192 |
| Msa0730420 | AT1G68280.1 | 59.559 | 136 | 54 | 1 | 58 | 193 | 51 | 185 | 4.15e-56 | 176 |
| Msa0730420 | AT1G35290.1 | 46.961 | 181 | 82 | 3 | 14 | 194 | 16 | 182 | 3.57e-53 | 169 |
| Msa0730420 | AT1G35250.1 | 53.676 | 136 | 62 | 1 | 59 | 194 | 48 | 182 | 9.78e-52 | 165 |
| Msa0730420 | AT1G35250.3 | 55.752 | 113 | 49 | 1 | 59 | 171 | 48 | 159 | 1.79e-40 | 135 |
| Msa0730420 | AT1G35250.2 | 54.930 | 71 | 31 | 1 | 59 | 129 | 48 | 117 | 1.22e-22 | 89.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGGACCAATGAATTTC+AGG | 0.170484 | 5_1:-39540337 | None:intergenic |
| TTGTTGTGACTTACTCTTAG+AGG | 0.306908 | 5_1:-39540353 | None:intergenic |
| GTTGTTAAGGTTAGGATATC+TGG | 0.308671 | 5_1:+39541385 | Msa0730420:CDS |
| TGGAGACAAATTTGTTGTTA+AGG | 0.346111 | 5_1:+39541372 | Msa0730420:CDS |
| ACTTAGTATTAAGGAGTAAT+GGG | 0.359723 | 5_1:-39538932 | None:intergenic |
| CTATCGTCCTGTTAGAATTC+CGG | 0.374728 | 5_1:+39541591 | Msa0730420:CDS |
| AGGTGAGTTGAATGCCTTCC+TGG | 0.375223 | 5_1:-39538994 | None:intergenic |
| GTGCTCCTGGCTTCCAAGAT+AGG | 0.377070 | 5_1:-39541547 | None:intergenic |
| ACATGTTCGCGATTATGAAT+TGG | 0.385221 | 5_1:+39539747 | Msa0730420:CDS |
| GAGCATCAGCGTTGTGCTCC+TGG | 0.390293 | 5_1:-39541560 | None:intergenic |
| ACAAATTTGTTGTTAAGGTT+AGG | 0.394775 | 5_1:+39541377 | Msa0730420:CDS |
| GCGGAAACGACTTAGTATTA+AGG | 0.403153 | 5_1:-39538941 | None:intergenic |
| AGATCTGCCGGAATTCTAAC+AGG | 0.406014 | 5_1:-39541598 | None:intergenic |
| CTCATGAGTTGTCACCTTGT+TGG | 0.415293 | 5_1:-39539813 | None:intergenic |
| TTTCTCTCTCGTTGATATCA+TGG | 0.431142 | 5_1:-39539067 | None:intergenic |
| TGGAAATAGACCTCATTGTT+TGG | 0.440558 | 5_1:-39541454 | None:intergenic |
| AAACTATCCCTGAAATTCAT+TGG | 0.441038 | 5_1:+39540329 | Msa0730420:CDS |
| CAGAATGAATGATTTCTTTG+AGG | 0.447385 | 5_1:+39539717 | Msa0730420:intron |
| CTCCAACTTCTCTGATTCCC+AGG | 0.453760 | 5_1:+39538976 | Msa0730420:CDS |
| TAGAGGACCAATGAATTTCA+GGG | 0.454045 | 5_1:-39540336 | None:intergenic |
| TTCCTGGGAATCAGAGAAGT+TGG | 0.483978 | 5_1:-39538978 | None:intergenic |
| GACAGCCTATCTTGGAAGCC+AGG | 0.495074 | 5_1:+39541542 | Msa0730420:intron |
| GACTTAGTATTAAGGAGTAA+TGG | 0.505746 | 5_1:-39538933 | None:intergenic |
| CAGAGAACTCTCTGGAATGC+AGG | 0.508261 | 5_1:-39539014 | None:intergenic |
| AATGAATGATTTCTTTGAGG+TGG | 0.510371 | 5_1:+39539720 | Msa0730420:CDS |
| ATGATATCAACGAGAGAGAA+AGG | 0.513613 | 5_1:+39539069 | Msa0730420:CDS |
| GTTCTCTGTGTGAGTAATGA+TGG | 0.519040 | 5_1:+39539029 | Msa0730420:CDS |
| TACTCACACAGAGAACTCTC+TGG | 0.535337 | 5_1:-39539022 | None:intergenic |
| AACTTCTCTGATTCCCAGGA+AGG | 0.561471 | 5_1:+39538980 | Msa0730420:CDS |
| AACAAGCATAAACAGAATTG+TGG | 0.565386 | 5_1:-39539786 | None:intergenic |
| GATATCATGGAGTGGTAAAG+AGG | 0.567934 | 5_1:-39539054 | None:intergenic |
| GATTATGAATTGGATCAATA+CGG | 0.588032 | 5_1:+39539757 | Msa0730420:CDS |
| GGTGAGTTGAATGCCTTCCT+GGG | 0.590146 | 5_1:-39538993 | None:intergenic |
| CTCTCGTTGATATCATGGAG+TGG | 0.622914 | 5_1:-39539062 | None:intergenic |
| TATGCTTGTTATTGCCAACA+AGG | 0.650339 | 5_1:+39539799 | Msa0730420:CDS |
| CTTAGTATTAAGGAGTAATG+GGG | 0.653537 | 5_1:-39538931 | None:intergenic |
| TAATGGGGAAAGTAACCCCA+TGG | 0.671575 | 5_1:-39538916 | None:intergenic |
| TTATAAGCTACCAAACAATG+AGG | 0.689144 | 5_1:+39541444 | Msa0730420:CDS |
| TGAATTGGATCAATACGGTG+TGG | 0.700307 | 5_1:+39539762 | Msa0730420:CDS |
| GTTGGAGATTTACTGCAGAG+CGG | 0.727669 | 5_1:-39538960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTGAAAAATGATATT+TGG | - | chr5_1:39540030-39540049 | None:intergenic | 10.0% |
| !!! | TTTTCAATAAATTAAACATT+TGG | + | chr5_1:39540038-39540057 | Msa0730420:intron | 10.0% |
| !!! | TTTTTGTTAAAAATTAAAGA+AGG | + | chr5_1:39540619-39540638 | Msa0730420:intron | 10.0% |
| !!! | TTTTGTTAAAAATTAAAGAA+GGG | + | chr5_1:39540620-39540639 | Msa0730420:intron | 10.0% |
| !! | TAAAATATGCAAAATATATA+TGG | - | chr5_1:39541086-39541105 | None:intergenic | 10.0% |
| !! | AATTTATAGTTTATTTAGAT+GGG | - | chr5_1:39541202-39541221 | None:intergenic | 10.0% |
| !!! | TGAAAATATTTGTTAATATT+TGG | + | chr5_1:39541509-39541528 | Msa0730420:intron | 10.0% |
| !!! | ATTTTTATTTTTTCCTCTTA+TGG | + | chr5_1:39539148-39539167 | Msa0730420:intron | 15.0% |
| !! | ATAATTTACAAAGAAAAAGT+AGG | + | chr5_1:39539911-39539930 | Msa0730420:intron | 15.0% |
| !! | TTTATATAAATATCTTCATC+AGG | + | chr5_1:39540227-39540246 | Msa0730420:intron | 15.0% |
| !! | TTTGTTAAAAATTAAAGAAG+GGG | + | chr5_1:39540621-39540640 | Msa0730420:intron | 15.0% |
| !!! | GATAGTTTATTTTTTTAAGA+AGG | + | chr5_1:39540758-39540777 | Msa0730420:intron | 15.0% |
| !!! | TCAAATTTTATAAAGTACTA+AGG | - | chr5_1:39540981-39541000 | None:intergenic | 15.0% |
| !!! | ATTTTGCATATTTTACAAAT+TGG | + | chr5_1:39541091-39541110 | Msa0730420:intron | 15.0% |
| !!! | TAAATACTTTTTTTGACAAA+AGG | - | chr5_1:39541167-39541186 | None:intergenic | 15.0% |
| !! | CAATTTATAGTTTATTTAGA+TGG | - | chr5_1:39541203-39541222 | None:intergenic | 15.0% |
| !! | AAGTTGAAAACTTTAAATTG+TGG | + | chr5_1:39539173-39539192 | Msa0730420:intron | 20.0% |
| !! | ATAACTGACATGTATATATA+AGG | - | chr5_1:39539281-39539300 | None:intergenic | 20.0% |
| !!! | TTTTAATTGTGATGATATCT+TGG | + | chr5_1:39540277-39540296 | Msa0730420:CDS | 20.0% |
| !! | ATTTCACAATACACTATAAA+TGG | + | chr5_1:39541278-39541297 | Msa0730420:intron | 20.0% |
| ! | ACTTAGTATTAAGGAGTAAT+GGG | - | chr5_1:39538935-39538954 | None:intergenic | 25.0% |
| ! | TGTATAATGAAGCATAAACA+AGG | - | chr5_1:39539119-39539138 | None:intergenic | 25.0% |
| ! | TGATTGATCATATATAACTC+TGG | + | chr5_1:39539212-39539231 | Msa0730420:intron | 25.0% |
| !! | TTTAAATTTTATCCAGCTCA+TGG | - | chr5_1:39539490-39539509 | None:intergenic | 25.0% |
| ! | ATTGCAAAGTGACATAAAAT+TGG | + | chr5_1:39539575-39539594 | Msa0730420:intron | 25.0% |
| !!! | ATGTAAACTTTTTCAACCTT+CGG | + | chr5_1:39539601-39539620 | Msa0730420:intron | 25.0% |
| ! | GATTATGAATTGGATCAATA+CGG | + | chr5_1:39539757-39539776 | Msa0730420:CDS | 25.0% |
| ! | AAATAAGCTGTCAATCAAAT+TGG | - | chr5_1:39539884-39539903 | None:intergenic | 25.0% |
| ! | AGAAAAAGTAGGTATTTGTA+AGG | + | chr5_1:39539922-39539941 | Msa0730420:intron | 25.0% |
| ! | ACTTTATCTCTCTATTGTTA+TGG | - | chr5_1:39539951-39539970 | None:intergenic | 25.0% |
| ! | AATCAAGAATGATGATTACT+TGG | + | chr5_1:39540093-39540112 | Msa0730420:intron | 25.0% |
| ! | ATCAAGAATGATGATTACTT+GGG | + | chr5_1:39540094-39540113 | Msa0730420:intron | 25.0% |
| !! | CATCAATTCTTAAAAAGCAT+TGG | + | chr5_1:39540254-39540273 | Msa0730420:CDS | 25.0% |
| ! | TTGAAAATGACTCATTGTAA+TGG | + | chr5_1:39540793-39540812 | Msa0730420:intron | 25.0% |
| ! | TGAAAATGACTCATTGTAAT+GGG | + | chr5_1:39540794-39540813 | Msa0730420:intron | 25.0% |
| !! | AAAGGTTTGGAATAAATACT+TGG | - | chr5_1:39541149-39541168 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTGACAAAAGGTT+TGG | - | chr5_1:39541162-39541181 | None:intergenic | 25.0% |
| !! | TTATTTAGATGGGACAATTT+TGG | - | chr5_1:39541192-39541211 | None:intergenic | 25.0% |
| ! | ATAAATTGCCTAAAATGTCA+AGG | + | chr5_1:39541215-39541234 | Msa0730420:intron | 25.0% |
| !! | TATGTTATCCTTGACATTTT+AGG | - | chr5_1:39541226-39541245 | None:intergenic | 25.0% |
| !!! | ACAAATTTGTTGTTAAGGTT+AGG | + | chr5_1:39541377-39541396 | Msa0730420:CDS | 25.0% |
| CTTAGTATTAAGGAGTAATG+GGG | - | chr5_1:39538934-39538953 | None:intergenic | 30.0% | |
| GACTTAGTATTAAGGAGTAA+TGG | - | chr5_1:39538936-39538955 | None:intergenic | 30.0% | |
| TCAAATCACATTCTTACCTT+CGG | - | chr5_1:39539368-39539387 | None:intergenic | 30.0% | |
| GAATGTTATATATGATCCGA+AGG | - | chr5_1:39539620-39539639 | None:intergenic | 30.0% | |
| CAGAATGAATGATTTCTTTG+AGG | + | chr5_1:39539717-39539736 | Msa0730420:intron | 30.0% | |
| ! | AATGAATGATTTCTTTGAGG+TGG | + | chr5_1:39539720-39539739 | Msa0730420:CDS | 30.0% |
| AACAAGCATAAACAGAATTG+TGG | - | chr5_1:39539789-39539808 | None:intergenic | 30.0% | |
| TCACAAAAGTTGTCACTAAA+TGG | + | chr5_1:39540000-39540019 | Msa0730420:intron | 30.0% | |
| AAACTATCCCTGAAATTCAT+TGG | + | chr5_1:39540329-39540348 | Msa0730420:CDS | 30.0% | |
| !! | TTTTTCAAAGCAAGAGTTAG+AGG | + | chr5_1:39540547-39540566 | Msa0730420:intron | 30.0% |
| AGGGGACGTATAATAAATAA+CGG | + | chr5_1:39540639-39540658 | Msa0730420:intron | 30.0% | |
| GAAAATGACTCATTGTAATG+GGG | + | chr5_1:39540795-39540814 | Msa0730420:intron | 30.0% | |
| !! | CATGTTGCTCTTTTAAGAAA+AGG | - | chr5_1:39540905-39540924 | None:intergenic | 30.0% |
| ! | CTTTTCGCTAATGTTTCTTA+TGG | + | chr5_1:39541326-39541345 | Msa0730420:intron | 30.0% |
| ! | TTTAAAACTTGCAACCAGAA+TGG | + | chr5_1:39541352-39541371 | Msa0730420:intron | 30.0% |
| !! | TGGAGACAAATTTGTTGTTA+AGG | + | chr5_1:39541372-39541391 | Msa0730420:CDS | 30.0% |
| TTATAAGCTACCAAACAATG+AGG | + | chr5_1:39541444-39541463 | Msa0730420:CDS | 30.0% | |
| CGAAAGTAAATAGTAAGTGA+TGG | - | chr5_1:39541477-39541496 | None:intergenic | 30.0% | |
| ! | ATTTTAGACTTAAGATCTGC+CGG | - | chr5_1:39541613-39541632 | None:intergenic | 30.0% |
| TTTCTCTCTCGTTGATATCA+TGG | - | chr5_1:39539070-39539089 | None:intergenic | 35.0% | |
| ATGATATCAACGAGAGAGAA+AGG | + | chr5_1:39539069-39539088 | Msa0730420:CDS | 35.0% | |
| GAAGCATAAACAAGGTTTGT+GGG | - | chr5_1:39539111-39539130 | None:intergenic | 35.0% | |
| TGAAGCATAAACAAGGTTTG+TGG | - | chr5_1:39539112-39539131 | None:intergenic | 35.0% | |
| ! | GTTTTCAACTTCACCATAAG+AGG | - | chr5_1:39539164-39539183 | None:intergenic | 35.0% |
| AAATCACATTCTTACCTTCG+GGG | - | chr5_1:39539366-39539385 | None:intergenic | 35.0% | |
| CAAATCACATTCTTACCTTC+GGG | - | chr5_1:39539367-39539386 | None:intergenic | 35.0% | |
| ACATGTTCGCGATTATGAAT+TGG | + | chr5_1:39539747-39539766 | Msa0730420:CDS | 35.0% | |
| !! | TATGCTTGTTATTGCCAACA+AGG | + | chr5_1:39539799-39539818 | Msa0730420:CDS | 35.0% |
| ACAACTCATGAGTTACTTCT+TGG | + | chr5_1:39539824-39539843 | Msa0730420:intron | 35.0% | |
| !! | TGAACACAAGTTTTATGCGA+CGG | - | chr5_1:39540072-39540091 | None:intergenic | 35.0% |
| !!! | TTTCAGGGATAGTTTTGACA+TGG | - | chr5_1:39540324-39540343 | None:intergenic | 35.0% |
| TAGAGGACCAATGAATTTCA+GGG | - | chr5_1:39540339-39540358 | None:intergenic | 35.0% | |
| TTAGAGGACCAATGAATTTC+AGG | - | chr5_1:39540340-39540359 | None:intergenic | 35.0% | |
| TTGTTGTGACTTACTCTTAG+AGG | - | chr5_1:39540356-39540375 | None:intergenic | 35.0% | |
| GTAAGTCACAACAAAATCCT+TGG | + | chr5_1:39540362-39540381 | Msa0730420:intron | 35.0% | |
| CTAGAAAACAAAAACGACCA+AGG | - | chr5_1:39540382-39540401 | None:intergenic | 35.0% | |
| !!! | CTTGGTCGTTTTTGTTTTCT+AGG | + | chr5_1:39540380-39540399 | Msa0730420:intron | 35.0% |
| GGACGTATAATAAATAACGG+AGG | + | chr5_1:39540642-39540661 | Msa0730420:intron | 35.0% | |
| AAATGGCTTCTGTAACTTTC+AGG | - | chr5_1:39540700-39540719 | None:intergenic | 35.0% | |
| GTCAGTTAAGCTACATGAAA+TGG | - | chr5_1:39540717-39540736 | None:intergenic | 35.0% | |
| AATGTGTACTAGTGTGAACA+TGG | - | chr5_1:39541060-39541079 | None:intergenic | 35.0% | |
| CAACAAATTTGTCTCCATTC+TGG | - | chr5_1:39541369-39541388 | None:intergenic | 35.0% | |
| GTTGTTAAGGTTAGGATATC+TGG | + | chr5_1:39541385-39541404 | Msa0730420:CDS | 35.0% | |
| TGGAAATAGACCTCATTGTT+TGG | - | chr5_1:39541457-39541476 | None:intergenic | 35.0% | |
| !! | ATTTTGATGACAGCCTATCT+TGG | + | chr5_1:39541534-39541553 | Msa0730420:intron | 35.0% |
| GCGGAAACGACTTAGTATTA+AGG | - | chr5_1:39538944-39538963 | None:intergenic | 40.0% | |
| GTTCTCTGTGTGAGTAATGA+TGG | + | chr5_1:39539029-39539048 | Msa0730420:CDS | 40.0% | |
| GATATCATGGAGTGGTAAAG+AGG | - | chr5_1:39539057-39539076 | None:intergenic | 40.0% | |
| TGAATTGGATCAATACGGTG+TGG | + | chr5_1:39539762-39539781 | Msa0730420:CDS | 40.0% | |
| TTGGGACACATTATGCTCAA+AGG | + | chr5_1:39540112-39540131 | Msa0730420:intron | 40.0% | |
| CTTTCAGGAACATATGCCAA+CGG | - | chr5_1:39540685-39540704 | None:intergenic | 40.0% | |
| CTATCGTCCTGTTAGAATTC+CGG | + | chr5_1:39541591-39541610 | Msa0730420:CDS | 40.0% | |
| GTTGGAGATTTACTGCAGAG+CGG | - | chr5_1:39538963-39538982 | None:intergenic | 45.0% | |
| TTCCTGGGAATCAGAGAAGT+TGG | - | chr5_1:39538981-39539000 | None:intergenic | 45.0% | |
| AACTTCTCTGATTCCCAGGA+AGG | + | chr5_1:39538980-39538999 | Msa0730420:CDS | 45.0% | |
| TACTCACACAGAGAACTCTC+TGG | - | chr5_1:39539025-39539044 | None:intergenic | 45.0% | |
| CTCTCGTTGATATCATGGAG+TGG | - | chr5_1:39539065-39539084 | None:intergenic | 45.0% | |
| AAGATACTTAGCTTCCCCGA+AGG | + | chr5_1:39539349-39539368 | Msa0730420:intron | 45.0% | |
| CTCATGAGTTGTCACCTTGT+TGG | - | chr5_1:39539816-39539835 | None:intergenic | 45.0% | |
| GACTAGAGACTTACAACCGT+TGG | + | chr5_1:39540666-39540685 | Msa0730420:intron | 45.0% | |
| AGATCTGCCGGAATTCTAAC+AGG | - | chr5_1:39541601-39541620 | None:intergenic | 45.0% | |
| !!! | TTTTTAAATAATAAAAACTA+AGG | + | chr5_1:39540570-39540589 | Msa0730420:intron | 5.0% |
| CTCCAACTTCTCTGATTCCC+AGG | + | chr5_1:39538976-39538995 | Msa0730420:CDS | 50.0% | |
| ! | GGTGAGTTGAATGCCTTCCT+GGG | - | chr5_1:39538996-39539015 | None:intergenic | 50.0% |
| ! | AGGTGAGTTGAATGCCTTCC+TGG | - | chr5_1:39538997-39539016 | None:intergenic | 50.0% |
| !! | CAGAGAACTCTCTGGAATGC+AGG | - | chr5_1:39539017-39539036 | None:intergenic | 50.0% |
| CATGGTGTCCTTATGGGTCA+CGG | - | chr5_1:39539472-39539491 | None:intergenic | 50.0% | |
| CCAGCTCATGGTGTCCTTAT+GGG | - | chr5_1:39539478-39539497 | None:intergenic | 50.0% | |
| TCCAGCTCATGGTGTCCTTA+TGG | - | chr5_1:39539479-39539498 | None:intergenic | 50.0% | |
| ATGGGTCACGGTGACTCGAT+AGG | - | chr5_1:39539460-39539479 | None:intergenic | 55.0% | |
| TCGAGTCACCGTGACCCATA+AGG | + | chr5_1:39539461-39539480 | Msa0730420:intron | 55.0% | |
| CCCATAAGGACACCATGAGC+TGG | + | chr5_1:39539475-39539494 | Msa0730420:intron | 55.0% | |
| GACAGCCTATCTTGGAAGCC+AGG | + | chr5_1:39541542-39541561 | Msa0730420:intron | 55.0% | |
| GTGCTCCTGGCTTCCAAGAT+AGG | - | chr5_1:39541550-39541569 | None:intergenic | 55.0% | |
| GAGCATCAGCGTTGTGCTCC+TGG | - | chr5_1:39541563-39541582 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 39538918 | 39541663 | 39538918 | ID=Msa0730420;Name=Msa0730420 |
| chr5_1 | mRNA | 39538918 | 39541663 | 39538918 | ID=Msa0730420-mRNA-1;Parent=Msa0730420;Name=Msa0730420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|199 |
| chr5_1 | exon | 39538918 | 39539090 | 39538918 | ID=Msa0730420-mRNA-1:exon:11676;Parent=Msa0730420-mRNA-1 |
| chr5_1 | exon | 39539720 | 39539820 | 39539720 | ID=Msa0730420-mRNA-1:exon:11677;Parent=Msa0730420-mRNA-1 |
| chr5_1 | exon | 39540249 | 39540361 | 39540249 | ID=Msa0730420-mRNA-1:exon:11678;Parent=Msa0730420-mRNA-1 |
| chr5_1 | exon | 39541370 | 39541465 | 39541370 | ID=Msa0730420-mRNA-1:exon:11679;Parent=Msa0730420-mRNA-1 |
| chr5_1 | exon | 39541547 | 39541663 | 39541547 | ID=Msa0730420-mRNA-1:exon:11680;Parent=Msa0730420-mRNA-1 |
| chr5_1 | CDS | 39538918 | 39539090 | 39538918 | ID=Msa0730420-mRNA-1:cds;Parent=Msa0730420-mRNA-1 |
| chr5_1 | CDS | 39539720 | 39539820 | 39539720 | ID=Msa0730420-mRNA-1:cds;Parent=Msa0730420-mRNA-1 |
| chr5_1 | CDS | 39540249 | 39540361 | 39540249 | ID=Msa0730420-mRNA-1:cds;Parent=Msa0730420-mRNA-1 |
| chr5_1 | CDS | 39541370 | 39541465 | 39541370 | ID=Msa0730420-mRNA-1:cds;Parent=Msa0730420-mRNA-1 |
| chr5_1 | CDS | 39541547 | 39541663 | 39541547 | ID=Msa0730420-mRNA-1:cds;Parent=Msa0730420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
