Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999340 | KEH27117.1 | 52.239 | 67 | 32 | 0 | 19 | 85 | 23 | 89 | 1.67e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999340 | A0A072UBW5 | 52.239 | 67 | 32 | 0 | 19 | 85 | 23 | 89 | 7.99e-16 | 77.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015710 | Msa0999340 | 0.800116 | 1.676158e-48 | -8.615850e-47 |
| Msa0055450 | Msa0999340 | 0.833220 | 6.044956e-56 | -8.615850e-47 |
| Msa0062440 | Msa0999340 | 0.802110 | 6.554617e-49 | -8.615850e-47 |
| Msa0104500 | Msa0999340 | 0.865501 | 5.639654e-65 | -8.615850e-47 |
| Msa0639460 | Msa0999340 | 0.840221 | 9.907728e-58 | -8.615850e-47 |
| Msa0667850 | Msa0999340 | 0.833757 | 4.439057e-56 | -8.615850e-47 |
| Msa0669840 | Msa0999340 | 0.844200 | 8.757484e-59 | -8.615850e-47 |
| Msa0682360 | Msa0999340 | 0.860565 | 1.890672e-63 | -8.615850e-47 |
| Msa0682530 | Msa0999340 | 0.800349 | 1.502612e-48 | -8.615850e-47 |
| Msa0725860 | Msa0999340 | 0.834776 | 2.465059e-56 | -8.615850e-47 |
| Msa0730420 | Msa0999340 | 0.806792 | 6.925657e-50 | -8.615850e-47 |
| Msa0739480 | Msa0999340 | 0.810990 | 8.757246e-51 | -8.615850e-47 |
| Msa0742180 | Msa0999340 | 0.833910 | 4.064604e-56 | -8.615850e-47 |
| Msa0786040 | Msa0999340 | 0.875452 | 3.048609e-68 | -8.615850e-47 |
| Msa0823400 | Msa0999340 | 0.842527 | 2.449004e-58 | -8.615850e-47 |
| Msa0124130 | Msa0999340 | 0.818608 | 1.793484e-52 | -8.615850e-47 |
| Msa0149140 | Msa0999340 | 0.808238 | 3.416648e-50 | -8.615850e-47 |
| Msa0152480 | Msa0999340 | 0.816894 | 4.370978e-52 | -8.615850e-47 |
| Msa0153420 | Msa0999340 | 0.800676 | 1.288640e-48 | -8.615850e-47 |
| Msa0176470 | Msa0999340 | 0.810726 | 9.989663e-51 | -8.615850e-47 |
| Msa0194380 | Msa0999340 | 0.854446 | 1.224438e-61 | -8.615850e-47 |
| Msa0203030 | Msa0999340 | 0.814984 | 1.165933e-51 | -8.615850e-47 |
| Msa0206800 | Msa0999340 | 0.842279 | 2.848489e-58 | -8.615850e-47 |
| Msa0236110 | Msa0999340 | 0.823488 | 1.348577e-53 | -8.615850e-47 |
| Msa0373960 | Msa0999340 | 0.877541 | 5.785806e-69 | -8.615850e-47 |
| Msa0406000 | Msa0999340 | 0.821293 | 4.360423e-53 | -8.615850e-47 |
| Msa0423100 | Msa0999340 | 0.901497 | 2.523517e-78 | -8.615850e-47 |
| Msa0424330 | Msa0999340 | 0.818935 | 1.512071e-52 | -8.615850e-47 |
| Msa0424340 | Msa0999340 | 0.809320 | 2.005983e-50 | -8.615850e-47 |
| Msa0441590 | Msa0999340 | 0.823064 | 1.693395e-53 | -8.615850e-47 |
| Msa0451400 | Msa0999340 | 0.820491 | 6.671319e-53 | -8.615850e-47 |
| Msa0469260 | Msa0999340 | 0.855773 | 5.037778e-62 | -8.615850e-47 |
| Msa0996270 | Msa0999340 | 0.819004 | 1.457987e-52 | -8.615850e-47 |
| Msa0999300 | Msa0999340 | 0.800297 | 1.539975e-48 | -8.615850e-47 |
| Msa0999340 | Msa0999350 | 0.915732 | 4.148238e-85 | -8.615850e-47 |
| Msa0999340 | Msa0999360 | 0.890723 | 7.611706e-74 | -8.615850e-47 |
| Msa0999340 | Msa0999390 | 0.981330 | 2.510737e-152 | -8.615850e-47 |
| Msa0999340 | Msa0999400 | 0.914380 | 2.052431e-84 | -8.615850e-47 |
| Msa0999340 | Msa0999410 | 0.885725 | 6.345901e-72 | -8.615850e-47 |
| Msa0999340 | Msa0999700 | 0.886420 | 3.474239e-72 | -8.615850e-47 |
| Msa0999340 | Msa1034680 | 0.825938 | 3.567610e-54 | -8.615850e-47 |
| Msa0999340 | Msa1047990 | 0.815926 | 7.195422e-52 | -8.615850e-47 |
| Msa0999340 | Msa1060580 | 0.821060 | 4.936055e-53 | -8.615850e-47 |
| Msa0999340 | Msa1073340 | 0.834218 | 3.403732e-56 | -8.615850e-47 |
| Msa0999340 | Msa1084240 | 0.806622 | 7.522608e-50 | -8.615850e-47 |
| Msa0999340 | Msa1084520 | 0.826863 | 2.147763e-54 | -8.615850e-47 |
| Msa0999340 | Msa1092020 | 0.841309 | 5.138139e-58 | -8.615850e-47 |
| Msa0999340 | Msa1100140 | 0.803805 | 2.925765e-49 | -8.615850e-47 |
| Msa0999340 | Msa1113850 | 0.808629 | 2.819916e-50 | -8.615850e-47 |
| Msa0999340 | Msa1125810 | 0.817999 | 2.464029e-52 | -8.615850e-47 |
| Msa0999340 | Msa1135380 | 0.831331 | 1.773545e-55 | -8.615850e-47 |
| Msa0999340 | Msa1145020 | 0.820269 | 7.499184e-53 | -8.615850e-47 |
| Msa0999340 | Msa1171310 | 0.823369 | 1.437533e-53 | -8.615850e-47 |
| Msa0999340 | Msa1177400 | 0.816211 | 6.214714e-52 | -8.615850e-47 |
| Msa0999340 | Msa1179360 | 0.811382 | 7.198349e-51 | -8.615850e-47 |
| Msa0999340 | Msa1179520 | 0.810260 | 1.259250e-50 | -8.615850e-47 |
| Msa0999340 | Msa1182730 | 0.837921 | 3.907996e-57 | -8.615850e-47 |
| Msa0999340 | Msa1183430 | 0.830595 | 2.687753e-55 | -8.615850e-47 |
| Msa0999340 | Msa1201160 | 0.810638 | 1.043569e-50 | -8.615850e-47 |
| Msa0999340 | Msa1228190 | 0.869707 | 2.530063e-66 | -8.615850e-47 |
| Msa0999340 | Msa1243020 | 0.823689 | 1.209770e-53 | -8.615850e-47 |
| Msa0999340 | Msa1271260 | 0.879334 | 1.356514e-69 | -8.615850e-47 |
| Msa0999340 | Msa1292010 | 0.825039 | 5.826443e-54 | -8.615850e-47 |
| Msa0999340 | Msa1292040 | 0.811718 | 6.084459e-51 | -8.615850e-47 |
| Msa0999340 | Msa1294290 | 0.810511 | 1.111790e-50 | -8.615850e-47 |
| Msa0999340 | Msa1310530 | 0.805399 | 1.360079e-49 | -8.615850e-47 |
| Msa0999340 | Msa1339440 | 0.872422 | 3.218856e-67 | -8.615850e-47 |
| Msa0999340 | Msa1345420 | 0.852619 | 4.099505e-61 | -8.615850e-47 |
| Msa0999340 | Msa1347360 | 0.838543 | 2.701632e-57 | -8.615850e-47 |
| Msa0999340 | Msa1351420 | 0.826678 | 2.377271e-54 | -8.615850e-47 |
| Msa0999340 | Msa1379970 | 0.819160 | 1.343589e-52 | -8.615850e-47 |
| Msa0999340 | Msa1389050 | 0.888056 | 8.279191e-73 | -8.615850e-47 |
| Msa0999340 | Msa1421550 | 0.805717 | 1.166389e-49 | -8.615850e-47 |
| Msa0999340 | Msa1431850 | 0.800384 | 1.478297e-48 | -8.615850e-47 |
| Msa0999340 | Msa1435480 | 0.890609 | 8.436611e-74 | -8.615850e-47 |
| Msa0999340 | Msa1442630 | 0.820681 | 6.033299e-53 | -8.615850e-47 |
| Msa0999340 | Msa1456730 | 0.827689 | 1.361508e-54 | -8.615850e-47 |
| Msa0999340 | Msa1458910 | 0.877524 | 5.866365e-69 | -8.615850e-47 |
| Msa0999340 | Msa1462530 | 0.837819 | 4.150467e-57 | -8.615850e-47 |
| Msa0242540 | Msa0999340 | 0.808157 | 3.554965e-50 | -8.615850e-47 |
| Msa0251240 | Msa0999340 | 0.807154 | 5.807086e-50 | -8.615850e-47 |
| Msa0252770 | Msa0999340 | 0.813928 | 1.996931e-51 | -8.615850e-47 |
| Msa0273990 | Msa0999340 | 0.802991 | 4.314542e-49 | -8.615850e-47 |
| Msa0277290 | Msa0999340 | 0.843539 | 1.316794e-58 | -8.615850e-47 |
| Msa0280750 | Msa0999340 | 0.838679 | 2.491356e-57 | -8.615850e-47 |
| Msa0288190 | Msa0999340 | 0.834522 | 2.855422e-56 | -8.615850e-47 |
| Msa0288200 | Msa0999340 | 0.826168 | 3.145865e-54 | -8.615850e-47 |
| Msa0291330 | Msa0999340 | 0.811920 | 5.499023e-51 | -8.615850e-47 |
| Msa0314630 | Msa0999340 | 0.823260 | 1.524171e-53 | -8.615850e-47 |
| Msa0322830 | Msa0999340 | 0.867115 | 1.735914e-65 | -8.615850e-47 |
| Msa0322840 | Msa0999340 | 0.832210 | 1.076353e-55 | -8.615850e-47 |
| Msa0322860 | Msa0999340 | 0.866241 | 3.293054e-65 | -8.615850e-47 |
| Msa0326540 | Msa0999340 | 0.813779 | 2.152996e-51 | -8.615850e-47 |
| Msa0329620 | Msa0999340 | 0.815080 | 1.110504e-51 | -8.615850e-47 |
| Msa0331540 | Msa0999340 | 0.811870 | 5.637886e-51 | -8.615850e-47 |
| Msa0351770 | Msa0999340 | 0.828958 | 6.729283e-55 | -8.615850e-47 |
| Msa0359250 | Msa0999340 | 0.813915 | 2.009681e-51 | -8.615850e-47 |
| Msa0492190 | Msa0999340 | 0.809644 | 1.709253e-50 | -8.615850e-47 |
| Msa0515950 | Msa0999340 | 0.812976 | 3.233405e-51 | -8.615850e-47 |
| Msa0520510 | Msa0999340 | 0.862872 | 3.726157e-64 | -8.615850e-47 |
| Msa0534930 | Msa0999340 | 0.822943 | 1.807706e-53 | -8.615850e-47 |
| Msa0535040 | Msa0999340 | 0.815864 | 7.430267e-52 | -8.615850e-47 |
| Msa0546710 | Msa0999340 | 0.840831 | 6.862568e-58 | -8.615850e-47 |
| Msa0546830 | Msa0999340 | 0.813296 | 2.750460e-51 | -8.615850e-47 |
| Msa0575740 | Msa0999340 | 0.840440 | 8.685634e-58 | -8.615850e-47 |
| Msa0591790 | Msa0999340 | 0.821257 | 4.444459e-53 | -8.615850e-47 |
| Msa0591800 | Msa0999340 | 0.906843 | 9.621624e-81 | -8.615850e-47 |
| Msa0845940 | Msa0999340 | 0.820884 | 5.417097e-53 | -8.615850e-47 |
| Msa0858840 | Msa0999340 | 0.804782 | 1.830947e-49 | -8.615850e-47 |
| Msa0860170 | Msa0999340 | 0.836651 | 8.257539e-57 | -8.615850e-47 |
| Msa0860280 | Msa0999340 | 0.808225 | 3.438888e-50 | -8.615850e-47 |
| Msa0862310 | Msa0999340 | 0.838664 | 2.514810e-57 | -8.615850e-47 |
| Msa0885060 | Msa0999340 | 0.806414 | 8.322184e-50 | -8.615850e-47 |
| Msa0899950 | Msa0999340 | 0.867610 | 1.205703e-65 | -8.615850e-47 |
| Msa0927120 | Msa0999340 | 0.842306 | 2.803310e-58 | -8.615850e-47 |
| Msa0929870 | Msa0999340 | 0.804856 | 1.767318e-49 | -8.615850e-47 |
| Msa0946210 | Msa0999340 | 0.831306 | 1.799134e-55 | -8.615850e-47 |
| Msa0961560 | Msa0999340 | 0.809005 | 2.343188e-50 | -8.615850e-47 |
| Msa0965310 | Msa0999340 | 0.890772 | 7.282939e-74 | -8.615850e-47 |
| Msa0979510 | Msa0999340 | 0.832149 | 1.114636e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999340 | MtrunA17_Chr6g0485481 | 52.239 | 67 | 32 | 0 | 19 | 85 | 23 | 89 | 1.54e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGAAGACATTGATTAT+TGG | 0.204699 | 6_4:+81296632 | Msa0999340:intron |
| AATCAAGTCCTTCATCGTTT+AGG | 0.330565 | 6_4:-81296660 | None:intergenic |
| GAGTTCCACCGGCTGCAATA+AGG | 0.392268 | 6_4:-81296807 | None:intergenic |
| GTTAATTCGATTATTAAAGC+CGG | 0.475431 | 6_4:+81296723 | Msa0999340:CDS |
| TTGGAAATTATCAAGAAGAA+TGG | 0.513592 | 6_4:+81296776 | Msa0999340:CDS |
| TTAATTCGATTATTAAAGCC+GGG | 0.522204 | 6_4:+81296724 | Msa0999340:CDS |
| CAAAGTTACCTTATTGCAGC+CGG | 0.529219 | 6_4:+81296799 | Msa0999340:CDS |
| ACCATGTAGAGGAGTTCAAT+CGG | 0.544476 | 6_4:+81296026 | Msa0999340:CDS |
| CTGTAAAAGTTAACATGTAG+AGG | 0.559805 | 6_4:-81296829 | None:intergenic |
| GCCGATTGAACTCCTCTACA+TGG | 0.561743 | 6_4:-81296027 | None:intergenic |
| TGGCAAGACCTAAACGATGA+AGG | 0.570614 | 6_4:+81296652 | Msa0999340:CDS |
| AGTTACCTTATTGCAGCCGG+TGG | 0.602448 | 6_4:+81296802 | Msa0999340:CDS |
| AACATGTAGAGGAGTTCCAC+CGG | 0.612575 | 6_4:-81296818 | None:intergenic |
| TTGTAAAAGTTACCATGTAG+AGG | 0.612953 | 6_4:+81296015 | Msa0999340:CDS |
| GAGTTCAATCGGCTGCAACA+AGG | 0.644422 | 6_4:+81296037 | Msa0999340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTTGAAAAAAAAATT+AGG | + | chr6_4:81296458-81296477 | Msa0999340:intron | 10.0% |
| !!! | AATGTTTTGAAAAAAAAATT+AGG | + | chr6_4:81296458-81296477 | Msa0999340:intron | 10.0% |
| !!! | TAAAAAATTAAAGTATTACC+CGG | - | chr6_4:81296745-81296764 | None:intergenic | 15.0% |
| !!! | TAAAAAATTAAAGTATTACC+CGG | - | chr6_4:81296745-81296764 | None:intergenic | 15.0% |
| !!! | TTTAGTTTTTTTTACTTCAG+CGG | - | chr6_4:81296096-81296115 | None:intergenic | 20.0% |
| !! | TTAATTAGAATATCAAAGTC+GGG | - | chr6_4:81296125-81296144 | None:intergenic | 20.0% |
| !! | GTTAATTAGAATATCAAAGT+CGG | - | chr6_4:81296126-81296145 | None:intergenic | 20.0% |
| !!! | AAAATGAAGACATTGATTAT+TGG | - | chr6_4:81296632-81296651 | None:intergenic | 20.0% |
| !!! | GTCTTCATTTTTAAATTCAA+AGG | - | chr6_4:81296623-81296642 | None:intergenic | 20.0% |
| !!! | AAAATGAAGACATTGATTAT+TGG | + | chr6_4:81296632-81296651 | Msa0999340:intron | 20.0% |
| !!! | ACTTTAATTTTTTACTTCAG+TGG | + | chr6_4:81296751-81296770 | Msa0999340:CDS | 20.0% |
| !!! | TTTAGTTTTTTTTACTTCAG+CGG | - | chr6_4:81296096-81296115 | None:intergenic | 20.0% |
| !! | TTAATTAGAATATCAAAGTC+GGG | - | chr6_4:81296125-81296144 | None:intergenic | 20.0% |
| !! | GTTAATTAGAATATCAAAGT+CGG | - | chr6_4:81296126-81296145 | None:intergenic | 20.0% |
| !!! | AAAATGAAGACATTGATTAT+TGG | - | chr6_4:81296632-81296651 | None:intergenic | 20.0% |
| !!! | GTCTTCATTTTTAAATTCAA+AGG | - | chr6_4:81296623-81296642 | None:intergenic | 20.0% |
| !!! | AAAATGAAGACATTGATTAT+TGG | + | chr6_4:81296632-81296651 | Msa0999340:intron | 20.0% |
| !!! | ACTTTAATTTTTTACTTCAG+TGG | + | chr6_4:81296751-81296770 | Msa0999340:CDS | 20.0% |
| ! | TTAGCATCAATACAAAAATC+AGG | + | chr6_4:81296170-81296189 | Msa0999340:intron | 25.0% |
| !! | AGAGAATTGCTAATAACTTT+TGG | - | chr6_4:81296245-81296264 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATTAGGCGTTA+CGG | + | chr6_4:81296466-81296485 | Msa0999340:intron | 25.0% |
| ! | GTTAATTCGATTATTAAAGC+CGG | + | chr6_4:81296723-81296742 | Msa0999340:CDS | 25.0% |
| ! | TTAATTCGATTATTAAAGCC+GGG | + | chr6_4:81296724-81296743 | Msa0999340:CDS | 25.0% |
| !!! | ATTTTTTACTTCAGTGGAAT+TGG | + | chr6_4:81296757-81296776 | Msa0999340:CDS | 25.0% |
| ! | TTGGAAATTATCAAGAAGAA+TGG | + | chr6_4:81296776-81296795 | Msa0999340:CDS | 25.0% |
| ! | TTAGCATCAATACAAAAATC+AGG | + | chr6_4:81296170-81296189 | Msa0999340:intron | 25.0% |
| !! | AGAGAATTGCTAATAACTTT+TGG | - | chr6_4:81296245-81296264 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATTAGGCGTTA+CGG | + | chr6_4:81296466-81296485 | Msa0999340:intron | 25.0% |
| ! | GTTAATTCGATTATTAAAGC+CGG | + | chr6_4:81296723-81296742 | Msa0999340:CDS | 25.0% |
| ! | TTAATTCGATTATTAAAGCC+GGG | + | chr6_4:81296724-81296743 | Msa0999340:CDS | 25.0% |
| !!! | ATTTTTTACTTCAGTGGAAT+TGG | + | chr6_4:81296757-81296776 | Msa0999340:CDS | 25.0% |
| ! | TTGGAAATTATCAAGAAGAA+TGG | + | chr6_4:81296776-81296795 | Msa0999340:CDS | 25.0% |
| TTGTAAAAGTTACCATGTAG+AGG | + | chr6_4:81296015-81296034 | Msa0999340:CDS | 30.0% | |
| CATGGAAATTATCAAGAAGA+AGG | - | chr6_4:81296072-81296091 | None:intergenic | 30.0% | |
| TAGCAATTCTCTTATCTTCT+CGG | + | chr6_4:81296253-81296272 | Msa0999340:intron | 30.0% | |
| TCGGAATATGTGTTAATTGT+AGG | + | chr6_4:81296272-81296291 | Msa0999340:intron | 30.0% | |
| ATGTGTTAATTGTAGGTTCT+CGG | + | chr6_4:81296279-81296298 | Msa0999340:intron | 30.0% | |
| AGGTGTTAGTTGTAAGTTAT+CGG | - | chr6_4:81296570-81296589 | None:intergenic | 30.0% | |
| TAGCAATTCTCTTATCTTCT+CGG | - | chr6_4:81296253-81296272 | None:intergenic | 30.0% | |
| CTGTAAAAGTTAACATGTAG+AGG | - | chr6_4:81296832-81296851 | None:intergenic | 30.0% | |
| TTGTAAAAGTTACCATGTAG+AGG | + | chr6_4:81296015-81296034 | Msa0999340:CDS | 30.0% | |
| CATGGAAATTATCAAGAAGA+AGG | - | chr6_4:81296072-81296091 | None:intergenic | 30.0% | |
| TAGCAATTCTCTTATCTTCT+CGG | + | chr6_4:81296253-81296272 | Msa0999340:intron | 30.0% | |
| TCGGAATATGTGTTAATTGT+AGG | + | chr6_4:81296272-81296291 | Msa0999340:intron | 30.0% | |
| ATGTGTTAATTGTAGGTTCT+CGG | + | chr6_4:81296279-81296298 | Msa0999340:intron | 30.0% | |
| AGGTGTTAGTTGTAAGTTAT+CGG | - | chr6_4:81296570-81296589 | None:intergenic | 30.0% | |
| TAGCAATTCTCTTATCTTCT+CGG | - | chr6_4:81296253-81296272 | None:intergenic | 30.0% | |
| CTGTAAAAGTTAACATGTAG+AGG | - | chr6_4:81296832-81296851 | None:intergenic | 30.0% | |
| !!! | TTTTTTTACTTCAGCGGACA+TGG | - | chr6_4:81296090-81296109 | None:intergenic | 35.0% |
| TTCTCTTATCTTCTCGGAAT+AGG | - | chr6_4:81296259-81296278 | None:intergenic | 35.0% | |
| AATCAAGTCCTTCATCGTTT+AGG | - | chr6_4:81296663-81296682 | None:intergenic | 35.0% | |
| !!! | TTTTTTTACTTCAGCGGACA+TGG | - | chr6_4:81296090-81296109 | None:intergenic | 35.0% |
| TTCTCTTATCTTCTCGGAAT+AGG | - | chr6_4:81296259-81296278 | None:intergenic | 35.0% | |
| AATCAAGTCCTTCATCGTTT+AGG | - | chr6_4:81296663-81296682 | None:intergenic | 35.0% | |
| ACCATGTAGAGGAGTTCAAT+CGG | + | chr6_4:81296026-81296045 | Msa0999340:CDS | 40.0% | |
| ! | TAGGCGTTACGGACAAATTT+TGG | + | chr6_4:81296477-81296496 | Msa0999340:intron | 40.0% |
| CAAAGTTACCTTATTGCAGC+CGG | + | chr6_4:81296799-81296818 | Msa0999340:CDS | 40.0% | |
| ACCATGTAGAGGAGTTCAAT+CGG | + | chr6_4:81296026-81296045 | Msa0999340:CDS | 40.0% | |
| ! | TAGGCGTTACGGACAAATTT+TGG | + | chr6_4:81296477-81296496 | Msa0999340:intron | 40.0% |
| CAAAGTTACCTTATTGCAGC+CGG | + | chr6_4:81296799-81296818 | Msa0999340:CDS | 40.0% | |
| TGGCAAGACAGAAACGATGA+AGG | - | chr6_4:81296197-81296216 | None:intergenic | 45.0% | |
| TGGCAAGACCTAAACGATGA+AGG | + | chr6_4:81296652-81296671 | Msa0999340:CDS | 45.0% | |
| AACATGTAGAGGAGTTCCAC+CGG | - | chr6_4:81296821-81296840 | None:intergenic | 45.0% | |
| TGGCAAGACAGAAACGATGA+AGG | - | chr6_4:81296197-81296216 | None:intergenic | 45.0% | |
| TGGCAAGACCTAAACGATGA+AGG | + | chr6_4:81296652-81296671 | Msa0999340:CDS | 45.0% | |
| AACATGTAGAGGAGTTCCAC+CGG | - | chr6_4:81296821-81296840 | None:intergenic | 45.0% | |
| GCCGATTGAACTCCTCTACA+TGG | - | chr6_4:81296030-81296049 | None:intergenic | 50.0% | |
| GAGTTCAATCGGCTGCAACA+AGG | + | chr6_4:81296037-81296056 | Msa0999340:CDS | 50.0% | |
| AGTTACCTTATTGCAGCCGG+TGG | + | chr6_4:81296802-81296821 | Msa0999340:CDS | 50.0% | |
| GCCGATTGAACTCCTCTACA+TGG | - | chr6_4:81296030-81296049 | None:intergenic | 50.0% | |
| GAGTTCAATCGGCTGCAACA+AGG | + | chr6_4:81296037-81296056 | Msa0999340:CDS | 50.0% | |
| AGTTACCTTATTGCAGCCGG+TGG | + | chr6_4:81296802-81296821 | Msa0999340:CDS | 50.0% | |
| ! | GAGTTCCACCGGCTGCAATA+AGG | - | chr6_4:81296810-81296829 | None:intergenic | 55.0% |
| ! | GAGTTCCACCGGCTGCAATA+AGG | - | chr6_4:81296810-81296829 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81296001 | 81296891 | 81296001 | ID=Msa0999340;Name=Msa0999340 |
| chr6_4 | mRNA | 81296001 | 81296891 | 81296001 | ID=Msa0999340-mRNA-1;Parent=Msa0999340;Name=Msa0999340-mRNA-1;_AED=0.52;_eAED=0.62;_QI=0|0|0|0.5|0|0|2|0|102 |
| chr6_4 | exon | 81296001 | 81296058 | 81296001 | ID=Msa0999340-mRNA-1:exon:15554;Parent=Msa0999340-mRNA-1 |
| chr6_4 | exon | 81296641 | 81296891 | 81296641 | ID=Msa0999340-mRNA-1:exon:15555;Parent=Msa0999340-mRNA-1 |
| chr6_4 | CDS | 81296001 | 81296058 | 81296001 | ID=Msa0999340-mRNA-1:cds;Parent=Msa0999340-mRNA-1 |
| chr6_4 | CDS | 81296641 | 81296891 | 81296641 | ID=Msa0999340-mRNA-1:cds;Parent=Msa0999340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
