AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731090 MtrunA17_Chr5g0424851 79.128 436 79 2 126 549 1 436 0.0 691
Msa0731090 MtrunA17_Chr5g0424851 84.416 385 46 3 344 714 6 390 0.0 649
Msa0731090 MtrunA17_Chr5g0424861 93.838 357 21 1 1 356 1 357 0.0 687
Msa0731090 MtrunA17_Chr5g0424861 80.090 221 33 1 339 548 127 347 1.62e-115 352
Msa0731090 MtrunA17_Chr5g0424861 80.723 166 32 0 549 714 137 302 1.78e-88 282
Msa0731090 MtrunA17_Chr3g0115371 64.507 355 118 4 1 351 1 351 1.03e-152 447
Msa0731090 MtrunA17_Chr3g0115371 61.111 216 73 1 344 548 131 346 1.40e-85 274
Msa0731090 MtrunA17_Chr3g0115371 58.434 166 69 0 549 714 136 301 9.18e-60 205
Msa0731090 MtrunA17_Chr3g0124601 50.142 351 164 3 1 346 14 358 7.65e-109 335
Msa0731090 MtrunA17_Chr3g0124601 53.081 211 88 1 349 548 148 358 1.91e-66 224
Msa0731090 MtrunA17_Chr3g0124601 50.000 166 83 0 549 714 148 313 9.41e-50 178
Msa0731090 MtrunA17_Chr8g0382861 47.399 346 175 4 1 346 15 353 5.16e-94 296
Msa0731090 MtrunA17_Chr8g0382861 48.611 216 100 1 344 548 138 353 7.35e-57 197
Msa0731090 MtrunA17_Chr8g0382861 44.643 168 93 0 547 714 141 308 1.73e-39 149
Msa0731090 MtrunA17_Chr8g0353501 51.568 287 128 2 67 346 181 463 1.68e-84 275
Msa0731090 MtrunA17_Chr8g0353501 48.372 215 93 1 352 548 249 463 1.30e-56 200
Msa0731090 MtrunA17_Chr8g0353501 43.529 170 89 1 552 714 249 418 1.40e-37 146
Msa0731090 MtrunA17_Chr7g0256211 50.871 287 130 3 67 346 167 449 3.86e-84 273
Msa0731090 MtrunA17_Chr7g0256211 46.977 215 96 2 352 548 235 449 7.11e-55 195
Msa0731090 MtrunA17_Chr7g0256211 42.941 170 90 2 552 714 235 404 4.76e-38 147
Msa0731090 MtrunA17_Chr2g0321431 51.429 280 129 2 67 346 194 466 1.75e-83 273
Msa0731090 MtrunA17_Chr2g0321431 42.381 210 108 2 350 548 259 466 1.70e-46 172
Msa0731090 MtrunA17_Chr2g0321431 40.000 165 97 1 550 714 259 421 4.27e-33 134
Msa0731090 MtrunA17_Chr7g0258321 42.500 360 190 5 3 346 102 460 2.75e-83 271
Msa0731090 MtrunA17_Chr7g0258321 43.556 225 112 1 339 548 236 460 2.68e-53 191
Msa0731090 MtrunA17_Chr7g0258321 40.936 171 97 1 546 712 243 413 1.25e-36 144
Msa0731090 MtrunA17_Chr1g0174701 47.508 301 150 2 54 346 203 503 1.21e-80 266
Msa0731090 MtrunA17_Chr1g0174701 43.049 223 112 1 341 548 281 503 6.98e-51 185
Msa0731090 MtrunA17_Chr1g0174701 42.775 173 95 1 546 714 286 458 2.09e-36 144
Msa0731090 MtrunA17_Chr4g0026401 43.235 340 166 5 7 346 146 458 1.03e-78 260
Msa0731090 MtrunA17_Chr4g0026401 43.333 210 106 2 350 548 251 458 4.99e-47 174
Msa0731090 MtrunA17_Chr4g0026401 38.650 163 98 1 550 712 251 411 3.91e-30 125
Msa0731090 MtrunA17_Chr5g0422771 44.631 298 154 2 56 346 168 461 9.89e-74 246
Msa0731090 MtrunA17_Chr5g0422771 40.930 215 109 1 352 548 247 461 2.56e-45 168
Msa0731090 MtrunA17_Chr5g0422771 38.636 176 101 1 552 720 247 422 1.17e-32 132
Msa0731090 MtrunA17_Chr1g0210151 46.367 289 149 3 62 345 49 336 3.08e-73 241
Msa0731090 MtrunA17_Chr1g0210151 42.466 219 108 2 352 556 127 341 3.62e-49 176
Msa0731090 MtrunA17_Chr1g0210151 40.964 166 95 1 552 714 127 292 9.93e-33 129
Msa0731090 MtrunA17_Chr3g0093451 43.030 165 87 3 68 225 47 211 2.54e-38 141
Msa0731090 MtrunA17_Chr3g0093451 39.773 88 52 1 552 638 124 211 1.79e-18 84.7
Msa0731090 MtrunA17_Chr3g0093451 38.636 88 53 1 352 438 124 211 7.62e-18 82.8
Msa0731090 MtrunA17_Chr1g0196951 31.282 195 110 5 361 544 59 240 7.01e-15 75.1
Msa0731090 MtrunA17_Chr1g0196951 31.000 200 115 5 148 342 59 240 1.40e-14 73.9
Msa0731090 MtrunA17_Chr7g0242651 25.862 174 113 3 178 339 50 219 5.37e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731090 AT1G77920.1 52.762 362 141 6 1 346 16 363 9.85e-114 348
Msa0731090 AT1G77920.1 54.717 212 84 1 349 548 152 363 8.39e-71 236
Msa0731090 AT1G77920.1 49.102 167 84 1 549 714 152 318 2.77e-47 172
Msa0731090 AT1G22070.1 51.093 366 154 4 1 346 19 379 4.52e-112 344
Msa0731090 AT1G22070.1 54.884 215 84 1 347 548 165 379 4.85e-72 239
Msa0731090 AT1G22070.1 47.024 168 87 1 549 714 167 334 2.50e-46 170
Msa0731090 AT5G10030.5 51.297 347 163 3 3 346 16 359 3.83e-106 328
Msa0731090 AT5G10030.5 54.460 213 86 1 347 548 147 359 6.25e-68 228
Msa0731090 AT5G10030.5 49.143 175 89 0 540 714 140 314 2.82e-50 180
Msa0731090 AT5G10030.3 51.297 347 163 3 3 346 16 359 3.83e-106 328
Msa0731090 AT5G10030.3 54.460 213 86 1 347 548 147 359 6.25e-68 228
Msa0731090 AT5G10030.3 49.143 175 89 0 540 714 140 314 2.82e-50 180
Msa0731090 AT5G10030.1 51.297 347 163 3 3 346 16 359 3.83e-106 328
Msa0731090 AT5G10030.1 54.460 213 86 1 347 548 147 359 6.25e-68 228
Msa0731090 AT5G10030.1 49.143 175 89 0 540 714 140 314 2.82e-50 180
Msa0731090 AT5G10030.4 51.297 347 163 3 3 346 16 359 3.83e-106 328
Msa0731090 AT5G10030.4 54.460 213 86 1 347 548 147 359 6.25e-68 228
Msa0731090 AT5G10030.4 49.143 175 89 0 540 714 140 314 2.82e-50 180
Msa0731090 AT5G10030.2 51.297 347 163 3 3 346 16 359 3.83e-106 328
Msa0731090 AT5G10030.2 54.460 213 86 1 347 548 147 359 6.25e-68 228
Msa0731090 AT5G10030.2 49.143 175 89 0 540 714 140 314 2.82e-50 180
Msa0731090 AT5G65210.5 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.5 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.5 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.7 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.7 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.7 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.3 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.3 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.3 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.1 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.1 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.1 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.2 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.2 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.2 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.4 49.429 350 173 3 1 346 14 363 8.58e-105 325
Msa0731090 AT5G65210.4 50.926 216 95 1 344 548 148 363 6.29e-64 217
Msa0731090 AT5G65210.4 48.795 166 85 0 549 714 153 318 3.66e-48 174
Msa0731090 AT5G65210.6 53.952 291 133 1 57 346 3 293 5.56e-100 310
Msa0731090 AT5G65210.6 51.659 211 91 1 349 548 83 293 7.73e-65 218
Msa0731090 AT5G65210.6 48.795 166 85 0 549 714 83 248 2.20e-49 176
Msa0731090 AT1G08320.2 43.915 378 173 9 31 397 8 357 1.01e-87 280
Msa0731090 AT1G08320.2 44.131 213 106 2 347 548 116 326 1.09e-51 184
Msa0731090 AT1G08320.2 41.420 169 97 1 546 714 115 281 3.09e-36 140
Msa0731090 AT1G08320.5 43.915 378 173 9 31 397 8 357 1.01e-87 280
Msa0731090 AT1G08320.5 44.131 213 106 2 347 548 116 326 1.09e-51 184
Msa0731090 AT1G08320.5 41.420 169 97 1 546 714 115 281 3.09e-36 140
Msa0731090 AT1G08320.1 43.411 387 180 9 22 397 123 481 4.55e-86 280
Msa0731090 AT1G08320.1 44.131 213 106 2 347 548 240 450 2.54e-50 183
Msa0731090 AT1G08320.1 41.420 169 97 1 546 714 239 405 5.43e-35 139
Msa0731090 AT1G08320.4 43.411 387 180 9 22 397 123 481 4.55e-86 280
Msa0731090 AT1G08320.4 44.131 213 106 2 347 548 240 450 2.54e-50 183
Msa0731090 AT1G08320.4 41.420 169 97 1 546 714 239 405 5.43e-35 139
Msa0731090 AT1G08320.3 43.411 387 180 9 22 397 123 481 4.55e-86 280
Msa0731090 AT1G08320.3 44.131 213 106 2 347 548 240 450 2.54e-50 183
Msa0731090 AT1G08320.3 41.420 169 97 1 546 714 239 405 5.43e-35 139
Msa0731090 AT5G06839.1 44.000 350 172 5 21 346 63 412 1.23e-81 266
Msa0731090 AT5G06839.1 43.243 222 106 1 347 548 191 412 5.47e-51 184
Msa0731090 AT5G06839.1 41.011 178 96 1 546 714 190 367 1.79e-35 139
Msa0731090 AT5G06950.2 48.951 286 136 2 67 346 46 327 1.96e-81 263
Msa0731090 AT5G06950.2 44.860 214 101 1 352 548 114 327 1.89e-53 187
Msa0731090 AT5G06950.2 42.604 169 91 1 552 714 114 282 2.49e-38 145
Msa0731090 AT5G06950.4 48.951 286 136 2 67 346 46 327 1.96e-81 263
Msa0731090 AT5G06950.4 44.860 214 101 1 352 548 114 327 1.89e-53 187
Msa0731090 AT5G06950.4 42.604 169 91 1 552 714 114 282 2.49e-38 145
Msa0731090 AT5G06950.1 48.951 286 136 2 67 346 46 327 1.96e-81 263
Msa0731090 AT5G06950.1 44.860 214 101 1 352 548 114 327 1.89e-53 187
Msa0731090 AT5G06950.1 42.604 169 91 1 552 714 114 282 2.49e-38 145
Msa0731090 AT5G06950.5 48.951 286 136 2 67 346 46 327 1.96e-81 263
Msa0731090 AT5G06950.5 44.860 214 101 1 352 548 114 327 1.89e-53 187
Msa0731090 AT5G06950.5 42.604 169 91 1 552 714 114 282 2.49e-38 145
Msa0731090 AT5G06950.3 48.951 286 136 2 67 346 46 327 1.96e-81 263
Msa0731090 AT5G06950.3 44.860 214 101 1 352 548 114 327 1.89e-53 187
Msa0731090 AT5G06950.3 42.604 169 91 1 552 714 114 282 2.49e-38 145
Msa0731090 AT5G06839.3 47.213 305 146 2 57 346 151 455 1.29e-80 265
Msa0731090 AT5G06839.3 43.243 222 106 1 347 548 234 455 1.53e-50 183
Msa0731090 AT5G06839.3 41.011 178 96 1 546 714 233 410 5.05e-35 139
Msa0731090 AT5G06839.2 43.305 351 174 5 21 346 63 413 1.51e-80 263
Msa0731090 AT5G06839.2 43.379 219 104 1 350 548 195 413 6.97e-51 183
Msa0731090 AT5G06839.2 41.573 178 95 1 546 714 191 368 7.17e-36 140
Msa0731090 AT3G12250.5 48.601 286 137 2 67 346 19 300 6.97e-80 258
Msa0731090 AT3G12250.5 43.925 214 103 1 352 548 87 300 5.23e-52 183
Msa0731090 AT3G12250.5 42.012 169 92 1 552 714 87 255 8.78e-38 143
Msa0731090 AT3G12250.6 48.601 286 137 2 67 346 46 327 1.40e-79 258
Msa0731090 AT3G12250.6 43.925 214 103 1 352 548 114 327 1.17e-51 183
Msa0731090 AT3G12250.6 42.012 169 92 1 552 714 114 282 2.74e-37 142
Msa0731090 AT3G12250.2 48.601 286 137 2 67 346 46 327 1.40e-79 258
Msa0731090 AT3G12250.2 43.925 214 103 1 352 548 114 327 1.17e-51 183
Msa0731090 AT3G12250.2 42.012 169 92 1 552 714 114 282 2.74e-37 142
Msa0731090 AT3G12250.7 48.601 286 137 2 67 346 46 327 1.40e-79 258
Msa0731090 AT3G12250.7 43.925 214 103 1 352 548 114 327 1.17e-51 183
Msa0731090 AT3G12250.7 42.012 169 92 1 552 714 114 282 2.74e-37 142
Msa0731090 AT3G12250.1 48.601 286 137 2 67 346 46 327 1.40e-79 258
Msa0731090 AT3G12250.1 43.925 214 103 1 352 548 114 327 1.17e-51 183
Msa0731090 AT3G12250.1 42.012 169 92 1 552 714 114 282 2.74e-37 142
Msa0731090 AT3G12250.3 48.601 286 137 2 67 346 40 321 1.55e-79 257
Msa0731090 AT3G12250.3 43.925 214 103 1 352 548 108 321 1.07e-51 182
Msa0731090 AT3G12250.3 42.012 169 92 1 552 714 108 276 2.30e-37 142
Msa0731090 AT3G12250.4 48.601 286 137 2 67 346 71 352 4.55e-79 257
Msa0731090 AT3G12250.4 43.925 214 103 1 352 548 139 352 3.68e-51 182
Msa0731090 AT3G12250.4 42.012 169 92 1 552 714 139 307 6.34e-37 142
Msa0731090 AT5G06960.3 48.252 286 138 2 67 346 26 307 8.09e-79 255
Msa0731090 AT5G06960.3 43.458 214 104 1 352 548 94 307 2.60e-50 178
Msa0731090 AT5G06960.3 42.012 169 92 1 552 714 94 262 1.36e-37 143
Msa0731090 AT5G06960.2 48.252 286 138 2 67 346 46 327 1.12e-78 255
Msa0731090 AT5G06960.2 43.458 214 104 1 352 548 114 327 4.39e-50 178
Msa0731090 AT5G06960.2 42.012 169 92 1 552 714 114 282 3.08e-37 142
Msa0731090 AT5G06960.1 48.252 286 138 2 67 346 46 327 1.12e-78 255
Msa0731090 AT5G06960.1 43.458 214 104 1 352 548 114 327 4.39e-50 178
Msa0731090 AT5G06960.1 42.012 169 92 1 552 714 114 282 3.08e-37 142
Msa0731090 AT1G68640.1 44.631 298 153 3 57 346 156 449 3.70e-68 231
Msa0731090 AT1G68640.1 43.458 214 104 1 352 548 236 449 2.12e-44 166
Msa0731090 AT1G68640.1 38.462 169 98 1 552 714 236 404 1.39e-32 132
Msa0731090 AT1G58330.1 27.753 227 139 7 132 339 3 223 4.11e-12 67.0

Find 120 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAATTATTGCTTCTTAA+TGG 0.156288 5_1:-41249749 None:intergenic
TTTATTGGATGTCGGTTATA+TGG 0.184139 5_1:-41248579 Msa0731090:CDS
TCTTTATTTGAAATCGAATA+TGG 0.209591 5_1:-41241890 Msa0731090:CDS
TGCTCAAGGCTTGCTGGCTA+TGG 0.224285 5_1:-41242298 Msa0731090:CDS
TCTTTGTTTGAAATTGAATA+TGG 0.229069 5_1:-41244004 Msa0731090:CDS
TCTTTGTTTGAAATTGAATA+TGG 0.229069 5_1:-41248449 Msa0731090:CDS
CCCTTGGATTTCGGAAACTA+TGG 0.241374 5_1:-41240812 Msa0731090:CDS
TACTACTTCTCCTTTGTTCA+TGG 0.265007 5_1:+41240772 None:intergenic
CAAGCTGATCCCTTGGATTT+CGG 0.267505 5_1:-41240821 Msa0731090:CDS
CAAGCTGATCCCTTGGATTT+CGG 0.267505 5_1:-41247626 Msa0731090:CDS
CTTAATTATTGCTTCTTAAT+GGG 0.271506 5_1:-41249748 Msa0731090:five_prime_UTR
TTTATACAGAAACAGTTTAT+TGG 0.277561 5_1:-41248594 Msa0731090:CDS
TGCTCAAGGCTTGTTGGCTA+TGG 0.316587 5_1:-41247294 Msa0731090:CDS
GCTCAAGGCTTGCTGGCTAT+GGG 0.326252 5_1:-41242297 Msa0731090:CDS
ATCCTCCAATCCAAAGAAAA+AGG 0.340935 5_1:+41241669 None:intergenic
GCAAGCTGCTCAAGGCTTGC+TGG 0.348421 5_1:-41242304 Msa0731090:CDS
ATCCTCCTATCCAAAGAAAA+AGG 0.354680 5_1:+41248228 None:intergenic
TTATGTTCATCTTCAACATT+GGG 0.356119 5_1:+41249502 None:intergenic
TCATTCAAATTCTCAAGTTT+CGG 0.363992 5_1:+41247755 None:intergenic
GCTGAAGATGCACTGTCAAT+AGG 0.369583 5_1:-41247686 Msa0731090:CDS
CTTATGTTCATCTTCAACAT+TGG 0.379233 5_1:+41249501 None:intergenic
GCTCAAGGCTTGTTGGCTAT+GGG 0.379556 5_1:-41247293 Msa0731090:CDS
CTAACCTGAGTTTATTGTTC+CGG 0.383626 5_1:+41248550 None:intergenic
TTCTGAAAAGATTTGAGTAT+TGG 0.389399 5_1:+41243876 None:intergenic
TCAAGCTGCTCAAGGCTTGT+TGG 0.395796 5_1:-41247300 Msa0731090:CDS
ACAGGCTTATGTTCAACAAC+TGG 0.406023 5_1:-41248779 Msa0731090:intron
CTTTCAGATGGCTGCTGCCA+TGG 0.412683 5_1:-41247594 Msa0731090:CDS
TATCGAGAAAACAAGAAAAC+AGG 0.417815 5_1:-41248719 Msa0731090:intron
GATGCTTTATATTTAATCTC+TGG 0.418501 5_1:-41243830 Msa0731090:CDS
CTTTGCAGGCAGATCACCTT+AGG 0.420677 5_1:-41247364 Msa0731090:intron
TTATTGGATGTCGGTTATAT+GGG 0.423086 5_1:-41248578 Msa0731090:CDS
TTCTGAAAAGATCTGAGTAT+TGG 0.428096 5_1:+41241762 None:intergenic
CCTCCCACATAGTCACTTGA+AGG 0.428980 5_1:+41249568 None:intergenic
AGCTACTCTCAACAAGTAGA+TGG 0.434040 5_1:+41241789 None:intergenic
AAGGTTCTCTTGATTCTTGA+GGG 0.435161 5_1:+41249353 None:intergenic
CCCTTGGATTTCGGAAACTA+CGG 0.436857 5_1:-41247617 Msa0731090:CDS
CAAGAATCAAGAGAACCTTC+TGG 0.437311 5_1:-41249349 Msa0731090:CDS
TACTGCTTCTCCTTTGTCCA+TGG 0.443791 5_1:+41247577 None:intergenic
TCTACCAGGCAGATTGCCTT+AGG 0.444347 5_1:-41240629 Msa0731090:intron
CTGAAGATGCACTGTCAATA+GGG 0.444666 5_1:-41247685 Msa0731090:CDS
CTCAAGGCTTGCTGGCTATG+GGG 0.451471 5_1:-41242296 Msa0731090:CDS
GACAAAGGAGAAGCAGTAGA+AGG 0.456711 5_1:-41247572 Msa0731090:CDS
CAACATTCAAGCTGATCCCT+TGG 0.459906 5_1:-41240828 Msa0731090:CDS
CAACATTCAAGCTGATCCCT+TGG 0.462368 5_1:-41247633 Msa0731090:CDS
CAGCTTGAAGAGAGGATAAA+CGG 0.467500 5_1:+41243021 None:intergenic
CTCTACAGGCAGATCACCTT+AGG 0.467754 5_1:-41242368 Msa0731090:intron
GTCGGTTATATGGGAACGTC+CGG 0.469360 5_1:-41248569 Msa0731090:CDS
GAAGGTTCTCTTGATTCTTG+AGG 0.474792 5_1:+41249352 None:intergenic
TGTTGTTGATCATACTCTGC+TGG 0.478454 5_1:+41247651 None:intergenic
TTGCCTTAGGCAAGAAACTC+TGG 0.479663 5_1:-41240616 Msa0731090:CDS
TCTATTTAATCTCTGGCGTA+TGG 0.481044 5_1:-41248268 Msa0731090:CDS
TCACCTTAGGCAACAAACTC+TGG 0.482872 5_1:-41242355 Msa0731090:CDS
ATGTCACGCATCTTATCAAT+TGG 0.485700 5_1:-41247323 Msa0731090:CDS
GCACCAGAGTTTCTTGCCTA+AGG 0.487385 5_1:+41240613 None:intergenic
TCAGTTAAAGCATCGAGCTT+AGG 0.490178 5_1:+41243071 None:intergenic
CTCAAGGCTTGTTGGCTATG+GGG 0.490238 5_1:-41247292 Msa0731090:CDS
AGTACAACCTTTCATAATCC+AGG 0.496322 5_1:-41240753 Msa0731090:intron
CATAAGTAGCATGGAGAACA+AGG 0.509417 5_1:-41249484 Msa0731090:intron
ATCAGTTAAAGCATCAAGCT+TGG 0.511597 5_1:+41240949 None:intergenic
ATTTAGAAGCTGTGATGGAC+GGG 0.512905 5_1:+41241646 None:intergenic
TCAAGGCTTGCTGGCTATGG+GGG 0.513635 5_1:-41242295 Msa0731090:CDS
ACAATTGCGCAAGCTGCTCA+AGG 0.516626 5_1:-41242312 Msa0731090:CDS
ACGCCAGAGTTTGTTGCCTA+AGG 0.516758 5_1:+41242352 None:intergenic
TCAGTTAAAGCATCAAGCTT+GGG 0.518227 5_1:+41240950 None:intergenic
TACATTACCTGGATTATGAA+AGG 0.521985 5_1:+41240746 None:intergenic
CACATAGTCACTTGAAGGAA+TGG 0.522645 5_1:+41249573 None:intergenic
CATTCCTTCAAGTGACTATG+TGG 0.523116 5_1:-41249572 Msa0731090:CDS
TCAAGGCTTGTTGGCTATGG+GGG 0.523504 5_1:-41247291 Msa0731090:CDS
AGATGCACTGTCAATAGGGT+TGG 0.527361 5_1:-41247681 Msa0731090:CDS
ATAACAGAGTTTGTTGCCTA+AGG 0.529419 5_1:+41247348 None:intergenic
CGGAAACTATGGCTTTCAGA+TGG 0.531463 5_1:-41240801 Msa0731090:CDS
TCAACTCAACTAATCCGAAA+AGG 0.531849 5_1:-41249611 Msa0731090:five_prime_UTR
GAATCAAAATAACATAATGT+AGG 0.534066 5_1:+41249694 None:intergenic
TTGAAATTGAATATGGACGT+TGG 0.536052 5_1:-41243997 Msa0731090:CDS
TTGAAATTGAATATGGACGT+TGG 0.536052 5_1:-41248442 Msa0731090:CDS
TCAATTGGTCAAGCTGCTCA+AGG 0.536456 5_1:-41247308 Msa0731090:CDS
TTCGCACTCTTAGTTCATTG+TGG 0.540430 5_1:-41242257 Msa0731090:CDS
TTCGCACTCTTAGTTCATTG+TGG 0.540430 5_1:-41247253 Msa0731090:CDS
TATTCAAGAACCTGTTCCTA+AGG 0.542554 5_1:-41249311 Msa0731090:intron
TAGATTGAAGCTCATGCAGT+TGG 0.542577 5_1:-41248749 Msa0731090:CDS
CGGAAACTACGGCTTTCAGA+TGG 0.543160 5_1:-41247606 Msa0731090:CDS
TGGAAACTATGGCTTTCAGA+TGG 0.549894 5_1:-41242955 Msa0731090:CDS
AATGAAAGCAGAAGCTGCAA+AGG 0.554661 5_1:-41248300 Msa0731090:CDS
AGAAACAGTTTATTGGATGT+CGG 0.555658 5_1:-41248587 Msa0731090:CDS
TTGAAATCGAATATGGACGT+TGG 0.555754 5_1:-41241883 Msa0731090:CDS
TATATTTAATCTCTGGCGCA+TGG 0.556144 5_1:-41243823 Msa0731090:CDS
TCTATTTAATCTCTGGCGCA+TGG 0.556554 5_1:-41241709 Msa0731090:CDS
GCTGAAGATGCTCTAACAGA+AGG 0.557253 5_1:-41243002 Msa0731090:CDS
CATTTAGAAGCTGTGATGGA+CGG 0.567145 5_1:+41241645 None:intergenic
GCCATAGTTTCCGAAATCCA+AGG 0.580056 5_1:+41240811 None:intergenic
GCCGTAGTTTCCGAAATCCA+AGG 0.586415 5_1:+41247616 None:intergenic
GAAGATGAACATAAGTAGCA+TGG 0.592197 5_1:-41249493 Msa0731090:CDS
CGTTGGATTGAAGAGCGAGA+TGG 0.597711 5_1:-41241866 Msa0731090:CDS
ATGAACTAAGAGTGCGAAGA+CGG 0.598124 5_1:+41242262 None:intergenic
TGTACATTTAGAATTTGTGA+TGG 0.598170 5_1:+41248200 None:intergenic
GCGCGGCTGCTCGAAAATGT+CGG 0.599361 5_1:-41248883 Msa0731090:CDS
CTGAAGATGCTCTAACAGAA+GGG 0.600192 5_1:-41243001 Msa0731090:CDS
AGCATCTTCAGCTTCAAGAG+AGG 0.602027 5_1:+41240892 None:intergenic
AGCATCTTCAGCTTGAAGAG+AGG 0.602027 5_1:+41243013 None:intergenic
ATGGCTGCTGCCATGGACAA+AGG 0.602885 5_1:-41247587 Msa0731090:CDS
GTCTCTTGATCATCTCCAGA+AGG 0.603267 5_1:+41249334 None:intergenic
TGTACATTTAGAAGCTGTGA+TGG 0.615091 5_1:+41241641 None:intergenic
CTCTGGCGTATGGAAATCAC+CGG 0.616184 5_1:-41248258 Msa0731090:CDS
GTTGGATTGAAGAACAAGAT+CGG 0.623220 5_1:-41243979 Msa0731090:CDS
TGTACGTTTAGAAGCTGTGA+TGG 0.624902 5_1:+41243755 None:intergenic
GCTGAAGATGCTCTAACACA+AGG 0.625835 5_1:-41240881 Msa0731090:CDS
TTCATCTACTTGTCGAGAGT+AGG 0.630773 5_1:-41248349 Msa0731090:CDS
ATGGCTGCTGCCATGAACAA+AGG 0.632024 5_1:-41240782 Msa0731090:CDS
CCATAGTTTCCGAAATCCAA+GGG 0.634236 5_1:+41240812 None:intergenic
CCGTAGTTTCCGAAATCCAA+GGG 0.636532 5_1:+41247617 None:intergenic
CCTTCAAGTGACTATGTGGG+AGG 0.650193 5_1:-41249568 Msa0731090:CDS
CTCTGGCGCATGGAAAACAT+CGG 0.663461 5_1:-41241699 Msa0731090:CDS
ATTCCTTCAAGTGACTATGT+GGG 0.664208 5_1:-41249571 Msa0731090:CDS
ACGTCCGGAACAATAAACTC+AGG 0.666698 5_1:-41248554 Msa0731090:intron
CTTCAAGAGAGGATAATCGA+AGG 0.668322 5_1:+41240903 None:intergenic
CTTGCTGAGATGATAAACGC+AGG 0.683767 5_1:+41247708 None:intergenic
CCATAGTTTCCAAAATCTAG+CGG 0.686392 5_1:+41242966 None:intergenic
TATGTTCATCTTCAACATTG+GGG 0.698417 5_1:+41249503 None:intergenic
CTGAAGATGCTCTAACACAA+GGG 0.704070 5_1:-41240880 Msa0731090:CDS
ACGTCAAGCACAGAATCGCG+CGG 0.719929 5_1:-41248900 Msa0731090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATAAATTAAATTAT+AGG + chr5_1:41245146-41245165 None:intergenic 0.0%
!!! ATTTTTTAAATAAATTTTAA+AGG - chr5_1:41245838-41245857 Msa0731090:intron 0.0%
!!! TTTTTTAAATAAATTTTAAA+GGG - chr5_1:41245839-41245858 Msa0731090:intron 0.0%
!! ATCAATATAAAATCATAATT+TGG - chr5_1:41242807-41242826 Msa0731090:intron 10.0%
!! TTCTTCAATATATATATATA+TGG - chr5_1:41243219-41243238 Msa0731090:intron 10.0%
!!! TTAAAAGCATATTAAAATAA+AGG + chr5_1:41243903-41243922 None:intergenic 10.0%
!!! ATATAAATTTCAGTTTTATT+AGG - chr5_1:41246713-41246732 Msa0731090:intron 10.0%
!! AAAAAGAGAAAATTAAAACT+TGG + chr5_1:41240619-41240638 None:intergenic 15.0%
!! AGTAGAAAAAATTGAAATAA+CGG - chr5_1:41241070-41241089 Msa0731090:intron 15.0%
!!! AATTAATTTTTTTTGACAGA+AGG + chr5_1:41241340-41241359 None:intergenic 15.0%
!! GTTGTAAAAATTGAATTTAT+AGG - chr5_1:41241492-41241511 Msa0731090:intron 15.0%
!! TAAAAATTGAATTTATAGGA+AGG - chr5_1:41241496-41241515 Msa0731090:intron 15.0%
!! TTTATATAAAATAGAGGAAT+AGG + chr5_1:41241676-41241695 None:intergenic 15.0%
!! ATAAGATAATAGTAATTAGT+GGG + chr5_1:41242166-41242185 None:intergenic 15.0%
!! AATAAGATAATAGTAATTAG+TGG + chr5_1:41242167-41242186 None:intergenic 15.0%
!! TATTTACTAATATAAACACT+TGG - chr5_1:41243625-41243644 Msa0731090:intron 15.0%
!!! ATTTAACTTTGTTTTATCTT+TGG - chr5_1:41243679-41243698 Msa0731090:intron 15.0%
!!! TTTTGTTATTAATTTGATAG+TGG + chr5_1:41244123-41244142 None:intergenic 15.0%
!! ACTATCAAATTAATAACAAA+AGG - chr5_1:41244122-41244141 Msa0731090:intron 15.0%
!!! TTACTATTAACAATTTTCTT+CGG - chr5_1:41244966-41244985 Msa0731090:intron 15.0%
!!! AACGGTTAAATTTTAAAATA+TGG - chr5_1:41245981-41246000 Msa0731090:intron 15.0%
!!! ACGGTTAAATTTTAAAATAT+GGG - chr5_1:41245982-41246001 Msa0731090:intron 15.0%
!!! CATTAATTTTTTTCTTCTAA+AGG + chr5_1:41246150-41246169 None:intergenic 15.0%
!! ACAAGTAATTACAAAATAAA+TGG + chr5_1:41246212-41246231 None:intergenic 15.0%
!! AAATTCCTTTAGATATTATT+TGG - chr5_1:41247025-41247044 Msa0731090:intron 15.0%
!! AATTCCTTTAGATATTATTT+GGG - chr5_1:41247026-41247045 Msa0731090:intron 15.0%
!!! ATTGTTAAATTATCATGTTT+TGG - chr5_1:41247102-41247121 Msa0731090:intron 15.0%
!! ATAGTATTACTATTGTAATA+GGG + chr5_1:41247667-41247686 None:intergenic 15.0%
!! TATAGTATTACTATTGTAAT+AGG + chr5_1:41247668-41247687 None:intergenic 15.0%
!! TATTTCAATTTGATTCAATA+TGG + chr5_1:41247809-41247828 None:intergenic 15.0%
!! GAATCAAAATAACATAATGT+AGG + chr5_1:41240649-41240668 None:intergenic 20.0%
!!! AGATATGACTTTTCTTTTTA+TGG - chr5_1:41240678-41240697 Msa0731090:intron 20.0%
!!! GAATTTCTATTTTGTTTCAA+TGG - chr5_1:41240894-41240913 Msa0731090:CDS 20.0%
!!! ATAGTTTTAACATAGTATCA+TGG - chr5_1:41241300-41241319 Msa0731090:intron 20.0%
!! TTTATACAGAAACAGTTTAT+TGG - chr5_1:41241746-41241765 Msa0731090:CDS 20.0%
!!! TCTTTGTTTGAAATTGAATA+TGG - chr5_1:41241891-41241910 Msa0731090:CDS 20.0%
!! TTTGAAAAAGATTTGAGTAT+TGG + chr5_1:41242022-41242041 None:intergenic 20.0%
!! TATAGTCTATATTCGTTAAT+AGG - chr5_1:41242188-41242207 Msa0731090:intron 20.0%
!! TTTGTATAAGTTCTTCTAAA+AGG + chr5_1:41243655-41243674 None:intergenic 20.0%
!! TATATTTAAACTTCTTTGGA+TGG + chr5_1:41243825-41243844 None:intergenic 20.0%
!! ACACTATATTTAAACTTCTT+TGG + chr5_1:41243829-41243848 None:intergenic 20.0%
!!! ATTTTACACTTTCAAGTATT+TGG + chr5_1:41243992-41244011 None:intergenic 20.0%
!!! TCATTTTAATAGAAACAACT+GGG + chr5_1:41244203-41244222 None:intergenic 20.0%
!!! TTCATTTTAATAGAAACAAC+TGG + chr5_1:41244204-41244223 None:intergenic 20.0%
!! TTATTCACAACAATGATATT+TGG - chr5_1:41244317-41244336 Msa0731090:intron 20.0%
!! TAGATAGATTCATTTCATAT+TGG - chr5_1:41244824-41244843 Msa0731090:intron 20.0%
!!! TTAGTATTTTTGTGTTTTTG+CGG - chr5_1:41245403-41245422 Msa0731090:intron 20.0%
!! GTTTGAATTATGTGATTAAA+GGG - chr5_1:41245442-41245461 Msa0731090:intron 20.0%
!! TTTGAATTATGTGATTAAAG+GGG - chr5_1:41245443-41245462 Msa0731090:intron 20.0%
!! GTTATGTTACTATATTTCTT+CGG + chr5_1:41245508-41245527 None:intergenic 20.0%
!!! ATATTTTAACATACTAGCAT+TGG - chr5_1:41245539-41245558 Msa0731090:intron 20.0%
!!! ACTGCCATATTTTAAAATAA+GGG + chr5_1:41245773-41245792 None:intergenic 20.0%
!!! AACTGCCATATTTTAAAATA+AGG + chr5_1:41245774-41245793 None:intergenic 20.0%
!!! ATTTTAAAATATGGCAGTTT+TGG - chr5_1:41245775-41245794 Msa0731090:intron 20.0%
!!! GATATATATTTTGAATGATG+TGG + chr5_1:41245918-41245937 None:intergenic 20.0%
!!! GATTGTTTTAATTGCATTTT+TGG + chr5_1:41246041-41246060 None:intergenic 20.0%
!!! CTTTTTTTTTTAACCTTCAA+CGG - chr5_1:41246114-41246133 Msa0731090:intron 20.0%
!!! ACTTATTTCAAGTTTACATA+TGG - chr5_1:41246232-41246251 Msa0731090:intron 20.0%
!!! TCTTTGTTTGAAATTGAATA+TGG - chr5_1:41241891-41241910 Msa0731090:CDS 20.0%
!! AAAAACGGAAAACATAAAAT+TGG + chr5_1:41246938-41246957 None:intergenic 20.0%
!! ATACCAAACGAAATTAAAAA+CGG + chr5_1:41246953-41246972 None:intergenic 20.0%
!!! AACTTTGTTATACTAATGTA+TGG - chr5_1:41246976-41246995 Msa0731090:intron 20.0%
!! ATTCCTTTAGATATTATTTG+GGG - chr5_1:41247027-41247046 Msa0731090:intron 20.0%
!!! ACAACAAATATTTTTTCACT+AGG + chr5_1:41247178-41247197 None:intergenic 20.0%
!! GTAATGTAACATCAAAATTT+GGG - chr5_1:41247455-41247474 Msa0731090:intron 20.0%
!! ATATCTATTCAACTATATAG+TGG + chr5_1:41247594-41247613 None:intergenic 20.0%
!!! TCTTTATTTGAAATCGAATA+TGG - chr5_1:41248450-41248469 Msa0731090:CDS 20.0%
!! TATTCAATCATTACTAGAAA+AGG - chr5_1:41249011-41249030 Msa0731090:intron 20.0%
!! TGAAATAAAGGATGAAAATT+TGG - chr5_1:41249035-41249054 Msa0731090:intron 20.0%
!! AGAAGCAGAAAAAATAAAAT+TGG + chr5_1:41249126-41249145 None:intergenic 20.0%
!! ATTGTTAAATTATCATCTCT+TGG - chr5_1:41249218-41249237 Msa0731090:intron 20.0%
! TTATGTTCATCTTCAACATT+GGG + chr5_1:41240841-41240860 None:intergenic 25.0%
!! TGATGTAATTTTATCACCTT+AGG + chr5_1:41241048-41241067 None:intergenic 25.0%
! TTAAAGAGAATTGTTTAGCT+TGG - chr5_1:41241358-41241377 Msa0731090:intron 25.0%
! GTTTCTCAATATCTATGTAT+AGG - chr5_1:41241410-41241429 Msa0731090:intron 25.0%
!!! AAGGATGACGATTTTTTATA+TGG + chr5_1:41241652-41241671 None:intergenic 25.0%
! ATAAAATAGAGGAATAGGTA+AGG + chr5_1:41241671-41241690 None:intergenic 25.0%
!! GATGTTTTCTATTTAATCTC+TGG - chr5_1:41242065-41242084 Msa0731090:intron 25.0%
!! TGTACATTTAGAATTTGTGA+TGG + chr5_1:41242143-41242162 None:intergenic 25.0%
! TCGTTAATAGGTCAAAATAA+AGG - chr5_1:41242200-41242219 Msa0731090:intron 25.0%
! ATCTGTAAGAAAAAGTCAAA+TGG + chr5_1:41242558-41242577 None:intergenic 25.0%
! TCATTCAAATTCTCAAGTTT+CGG + chr5_1:41242588-41242607 None:intergenic 25.0%
!!! TTCGTTTGTTATTTTTGAGA+TGG - chr5_1:41243539-41243558 Msa0731090:intron 25.0%
! CGAAATAACTTATACATGAA+CGG - chr5_1:41243706-41243725 Msa0731090:intron 25.0%
! GCAGTGTATAAAGAATAAAA+AGG + chr5_1:41244181-41244200 None:intergenic 25.0%
!!! TTCTTCATTTTTAACTGATG+TGG + chr5_1:41244376-41244395 None:intergenic 25.0%
! AAAAAGAGCTTAATGCTTAA+AGG - chr5_1:41244409-41244428 Msa0731090:intron 25.0%
! TGGATTACGTCATAAATAAA+AGG + chr5_1:41244739-41244758 None:intergenic 25.0%
! AAAGAAATCAACCTATGAAT+TGG + chr5_1:41244865-41244884 None:intergenic 25.0%
! TTAAATCTACTTGTTTCCAA+GGG + chr5_1:41245059-41245078 None:intergenic 25.0%
! ATTATAGGAAGAAATAAGCA+TGG + chr5_1:41245131-41245150 None:intergenic 25.0%
! ATATTAAAATTTCTGCATGC+AGG - chr5_1:41245191-41245210 Msa0731090:intron 25.0%
! GGTTTGAATTATGTGATTAA+AGG - chr5_1:41245441-41245460 Msa0731090:intron 25.0%
!!! AGTCTTGATTGTTTCTATTA+GGG + chr5_1:41245703-41245722 None:intergenic 25.0%
!!! AAGTCTTGATTGTTTCTATT+AGG + chr5_1:41245704-41245723 None:intergenic 25.0%
! ATTCGCAAAATAGTGAAAAT+AGG + chr5_1:41245745-41245764 None:intergenic 25.0%
!! ATTTTCACTATTTTGCGAAT+TGG - chr5_1:41245745-41245764 Msa0731090:intron 25.0%
!!! CTGCCATATTTTAAAATAAG+GGG + chr5_1:41245772-41245791 None:intergenic 25.0%
!! TTTTCACAATTTTGTGGAAT+TGG + chr5_1:41246010-41246029 None:intergenic 25.0%
! TCCACAAAATTGTGAAAATA+AGG - chr5_1:41246012-41246031 Msa0731090:intron 25.0%
!!! ACCTTATTTTCACAATTTTG+TGG + chr5_1:41246016-41246035 None:intergenic 25.0%
! CTTTATTATTGTATGAAGCA+GGG - chr5_1:41246310-41246329 Msa0731090:intron 25.0%
!! TTCTGAAAAGATTTGAGTAT+TGG + chr5_1:41246467-41246486 None:intergenic 25.0%
! GATGCTTTATATTTAATCTC+TGG - chr5_1:41246510-41246529 Msa0731090:intron 25.0%
! TTGAAACAGATTAAGATTAG+TGG + chr5_1:41246612-41246631 None:intergenic 25.0%
! TAACTACCATATTGAATTAC+AGG - chr5_1:41246659-41246678 Msa0731090:intron 25.0%
! AACTACCATATTGAATTACA+GGG - chr5_1:41246660-41246679 Msa0731090:intron 25.0%
!! GTGAATATGTCTCATTTTAA+AGG - chr5_1:41246684-41246703 Msa0731090:intron 25.0%
!!! TATGTCTCATTTTAAAGGTT+TGG - chr5_1:41246689-41246708 Msa0731090:intron 25.0%
! ATAAAATTGGTCATCACAAT+TGG + chr5_1:41246925-41246944 None:intergenic 25.0%
!!! TTTCCGTTTTTAATTTCGTT+TGG - chr5_1:41246947-41246966 Msa0731090:intron 25.0%
!!! ACAAATATTTTTTCACTAGG+CGG + chr5_1:41247175-41247194 None:intergenic 25.0%
!!! AATTTTGATGTTACATTACC+TGG + chr5_1:41247454-41247473 None:intergenic 25.0%
! GGTAATGTAACATCAAAATT+TGG - chr5_1:41247454-41247473 Msa0731090:intron 25.0%
!!! CAACTTTTTTTTTTTGAAGG+AGG + chr5_1:41247563-41247582 None:intergenic 25.0%
!!! TCGCAACTTTTTTTTTTTGA+AGG + chr5_1:41247566-41247585 None:intergenic 25.0%
!!! GTAATAGGGTTTTGAAAAAA+AGG + chr5_1:41247653-41247672 None:intergenic 25.0%
! TTGGGAATAAAAGTTTGTAT+AGG + chr5_1:41247693-41247712 None:intergenic 25.0%
! TTGATTCAATATGGATTCTA+AGG + chr5_1:41247800-41247819 None:intergenic 25.0%
!! TATTTTACATATGAACCAGT+AGG - chr5_1:41248207-41248226 Msa0731090:CDS 25.0%
!! ATTTTACATATGAACCAGTA+GGG - chr5_1:41248208-41248227 Msa0731090:CDS 25.0%
! ATTCGGATAAAATACATGTT+TGG + chr5_1:41248281-41248300 None:intergenic 25.0%
! AATTTGAACTTGAACGAATT+CGG + chr5_1:41248298-41248317 None:intergenic 25.0%
!! AATTTCTCATCTCTATTTCT+AGG + chr5_1:41248366-41248385 None:intergenic 25.0%
! TAGAAATAGAGATGAGAAAT+TGG - chr5_1:41248365-41248384 Msa0731090:CDS 25.0%
!! GATGTTTTCTATTTAATCTC+TGG - chr5_1:41242065-41242084 Msa0731090:intron 25.0%
!! GGTTATTTCACAAAATTATG+CGG + chr5_1:41248810-41248829 None:intergenic 25.0%
! ACTAGAAAAGGTTGAAATAA+AGG - chr5_1:41249023-41249042 Msa0731090:intron 25.0%
! GAAAATTTGGAGATGAAAAA+AGG - chr5_1:41249048-41249067 Msa0731090:intron 25.0%
! ATAAAATTGGTCATCACATT+TGG + chr5_1:41249113-41249132 None:intergenic 25.0%
!!! GACAAATATTTTTTCACTAG+TGG + chr5_1:41249291-41249310 None:intergenic 25.0%
! AAGACTATACAACAATAACA+TGG + chr5_1:41249313-41249332 None:intergenic 25.0%
! GTAATGTAACATCATGATTT+CGG - chr5_1:41249609-41249628 Msa0731090:exon 25.0%
! AGAAAGAAAGACATTTAACT+TGG + chr5_1:41249692-41249711 None:intergenic 25.0%
! TCATACATGTTCATCCTTTT+CGG + chr5_1:41240746-41240765 None:intergenic 30.0%
TATGTTCATCTTCAACATTG+GGG + chr5_1:41240840-41240859 None:intergenic 30.0%
CTTATGTTCATCTTCAACAT+TGG + chr5_1:41240842-41240861 None:intergenic 30.0%
! AATTTTATCACCTTAGGAAC+AGG + chr5_1:41241042-41241061 None:intergenic 30.0%
AAAGACGAGAAAAATAACAC+TGG - chr5_1:41241101-41241120 Msa0731090:intron 30.0%
TTTGTATGTTTGTGATTCAC+AGG - chr5_1:41241543-41241562 Msa0731090:intron 30.0%
TATCGAGAAAACAAGAAAAC+AGG - chr5_1:41241621-41241640 Msa0731090:intron 30.0%
TTATCCATATTTATCCTTGC+AGG - chr5_1:41241722-41241741 Msa0731090:CDS 30.0%
TATCCATATTTATCCTTGCA+GGG - chr5_1:41241723-41241742 Msa0731090:CDS 30.0%
AGAAACAGTTTATTGGATGT+CGG - chr5_1:41241753-41241772 Msa0731090:CDS 30.0%
! TTTATTGGATGTCGGTTATA+TGG - chr5_1:41241761-41241780 Msa0731090:CDS 30.0%
! TTATTGGATGTCGGTTATAT+GGG - chr5_1:41241762-41241781 Msa0731090:CDS 30.0%
TTGAAATTGAATATGGACGT+TGG - chr5_1:41241898-41241917 Msa0731090:CDS 30.0%
ACGAATTTACAACTGTTTAG+AGG - chr5_1:41242313-41242332 Msa0731090:CDS 30.0%
AATTTAAACTTCGTCTCTTG+CGG - chr5_1:41242337-41242356 Msa0731090:CDS 30.0%
!! AGTAGAAGGTTTTGTAATTC+AGG - chr5_1:41242782-41242801 Msa0731090:intron 30.0%
TGTGTATTAGAATTCAAACG+TGG - chr5_1:41242884-41242903 Msa0731090:intron 30.0%
GTGTATTAGAATTCAAACGT+GGG - chr5_1:41242885-41242904 Msa0731090:intron 30.0%
!! CTTAATTTGAGTGTTGAGTA+TGG + chr5_1:41243139-41243158 None:intergenic 30.0%
ATGATGCAAAGTTCATACTA+CGG - chr5_1:41243272-41243291 Msa0731090:intron 30.0%
CCAAAGAGATATTCTTGATA+GGG + chr5_1:41243588-41243607 None:intergenic 30.0%
TCCAAAGAGATATTCTTGAT+AGG + chr5_1:41243589-41243608 None:intergenic 30.0%
GGTTAAAGAACTCATAGAAA+AGG + chr5_1:41243804-41243823 None:intergenic 30.0%
GTTCTTTAACTAGTGTATCA+GGG + chr5_1:41243961-41243980 None:intergenic 30.0%
AGTTCTTTAACTAGTGTATC+AGG + chr5_1:41243962-41243981 None:intergenic 30.0%
ATATATCAACTACTTGTGAG+TGG - chr5_1:41244091-41244110 Msa0731090:intron 30.0%
CAAAGGAAACAACTAAAAGT+TGG + chr5_1:41244759-41244778 None:intergenic 30.0%
!! CAACTTTTAGTTGTTTCCTT+TGG - chr5_1:41244757-41244776 Msa0731090:intron 30.0%
TCAATTGATTACCTCAAGAA+AGG + chr5_1:41245016-41245035 None:intergenic 30.0%
CTTAAATCTACTTGTTTCCA+AGG + chr5_1:41245060-41245079 None:intergenic 30.0%
! AAGCATGGTGATTTTATAGT+TGG + chr5_1:41245116-41245135 None:intergenic 30.0%
TCATCAAGAACAATAAACTC+AGG - chr5_1:41245260-41245279 Msa0731090:intron 30.0%
TGCAATTGAAGTAAACTGAA+TGG - chr5_1:41245355-41245374 Msa0731090:intron 30.0%
!! TATTTTTGTGTTTTTGCGGT+TGG - chr5_1:41245407-41245426 Msa0731090:intron 30.0%
!! ATTTTTGTGTTTTTGCGGTT+GGG - chr5_1:41245408-41245427 Msa0731090:intron 30.0%
TTATGTGATTAAAGGGGTTT+AGG - chr5_1:41245449-41245468 Msa0731090:intron 30.0%
CATGTACATAAATGAAAGAG+AGG + chr5_1:41245623-41245642 None:intergenic 30.0%
!!! GGTCCCCTTATTTTAAAATA+TGG - chr5_1:41245766-41245785 Msa0731090:intron 30.0%
TTAGACCAAATATCGAAAGA+AGG + chr5_1:41245802-41245821 None:intergenic 30.0%
!!! TTTTTAGTTCAAAACCACGA+TGG - chr5_1:41245949-41245968 Msa0731090:intron 30.0%
CCTGCTTCATACAATAATAA+AGG + chr5_1:41246312-41246331 None:intergenic 30.0%
CCTTTATTATTGTATGAAGC+AGG - chr5_1:41246309-41246328 Msa0731090:intron 30.0%
TTGAAATTGAATATGGACGT+TGG - chr5_1:41241898-41241917 Msa0731090:CDS 30.0%
!! CAAAGAAAAAAGCGTTCTAA+TGG + chr5_1:41246549-41246568 None:intergenic 30.0%
!!! CATTAGAACGCTTTTTTCTT+TGG - chr5_1:41246547-41246566 Msa0731090:intron 30.0%
AAGCAATGACAATTTAGAGA+TGG - chr5_1:41246853-41246872 Msa0731090:intron 30.0%
GACAATTTAGAGATGGAAAA+AGG - chr5_1:41246860-41246879 Msa0731090:intron 30.0%
CAACCCCAAATAATATCTAA+AGG + chr5_1:41247033-41247052 None:intergenic 30.0%
! CTTTAGATATTATTTGGGGT+TGG - chr5_1:41247031-41247050 Msa0731090:intron 30.0%
! TAGAAGAGATTTTATGACGT+CGG - chr5_1:41247131-41247150 Msa0731090:intron 30.0%
!! GTTGTTCTTGTATAGTTTTG+CGG - chr5_1:41247193-41247212 Msa0731090:intron 30.0%
AAAGACAAGTAGTTTCTACA+AGG + chr5_1:41247231-41247250 None:intergenic 30.0%
!! AGTAGAAAGTTTTGTAATCC+AGG - chr5_1:41247433-41247452 Msa0731090:intron 30.0%
AAAGGTTTGTGACTGTAATT+TGG + chr5_1:41247635-41247654 None:intergenic 30.0%
!! AGGAATAGTTTGTTATTACG+TGG + chr5_1:41247892-41247911 None:intergenic 30.0%
TTGATGTAGGACTAACTATT+AGG + chr5_1:41247912-41247931 None:intergenic 30.0%
AAGAGTGAAACATTTGATGT+AGG + chr5_1:41247925-41247944 None:intergenic 30.0%
! TAATGTTTTCCTTTCTCTAC+AGG - chr5_1:41247958-41247977 Msa0731090:intron 30.0%
! TTTTACATATGAACCAGTAG+GGG - chr5_1:41248209-41248228 Msa0731090:CDS 30.0%
GGATAAAATACATGTTTGGT+TGG + chr5_1:41248277-41248296 None:intergenic 30.0%
!!! GTGCTATTATTTTTTTCAGC+AGG - chr5_1:41248423-41248442 Msa0731090:CDS 30.0%
! TTCTGAAAAGATCTGAGTAT+TGG + chr5_1:41248581-41248600 None:intergenic 30.0%
TTCAAGCAGATTAAGATAAG+TGG + chr5_1:41248726-41248745 None:intergenic 30.0%
! GAATTGAAGTCTCATTTTGA+AGG - chr5_1:41248852-41248871 Msa0731090:intron 30.0%
TGAAAAAGTTGAAATAACCG+CGG + chr5_1:41249154-41249173 None:intergenic 30.0%
ATGTTATAAAACCTGTTACG+AGG + chr5_1:41249247-41249266 None:intergenic 30.0%
! ATAACATCGATTGATACATG+TGG - chr5_1:41249260-41249279 Msa0731090:intron 30.0%
TACATTACCTGGATTATGAA+AGG + chr5_1:41249597-41249616 None:intergenic 30.0%
AATCATGATGTTACATTACC+TGG + chr5_1:41249608-41249627 None:intergenic 30.0%
!! ACATTTAACTTGGCTATTGA+AGG + chr5_1:41249682-41249701 None:intergenic 30.0%
TCAACTCAACTAATCCGAAA+AGG - chr5_1:41240729-41240748 Msa0731090:intron 35.0%
ATTCCTTCAAGTGACTATGT+GGG - chr5_1:41240769-41240788 Msa0731090:CDS 35.0%
GAAGATGAACATAAGTAGCA+TGG - chr5_1:41240847-41240866 Msa0731090:CDS 35.0%
AAGGTTCTCTTGATTCTTGA+GGG + chr5_1:41240990-41241009 None:intergenic 35.0%
TATTCAAGAACCTGTTCCTA+AGG - chr5_1:41241029-41241048 Msa0731090:intron 35.0%
TAGCTTGGAAGAGTTCATAA+TGG - chr5_1:41241373-41241392 Msa0731090:intron 35.0%
AAACCCTGCAAGGATAAATA+TGG + chr5_1:41241729-41241748 None:intergenic 35.0%
CTAACCTGAGTTTATTGTTC+CGG + chr5_1:41241793-41241812 None:intergenic 35.0%
TCTATTTAATCTCTGGCGTA+TGG - chr5_1:41242072-41242091 Msa0731090:intron 35.0%
ATCCTCCTATCCAAAGAAAA+AGG + chr5_1:41242115-41242134 None:intergenic 35.0%
TCAGCTCAGTGGTAAAATAA+TGG + chr5_1:41242371-41242390 None:intergenic 35.0%
! TGTCATTTCATGTAAACCTC+AGG - chr5_1:41242473-41242492 Msa0731090:intron 35.0%
!! TGACTTTTTCTTACAGATCG+TGG - chr5_1:41242560-41242579 Msa0731090:intron 35.0%
TATTAGAATTCAAACGTGGG+TGG - chr5_1:41242888-41242907 Msa0731090:intron 35.0%
! GCATTTTTCTTCTTCTTTGC+AGG - chr5_1:41242962-41242981 Msa0731090:CDS 35.0%
!! ATAACAGAGTTTGTTGCCTA+AGG + chr5_1:41242995-41243014 None:intergenic 35.0%
ATGTCACGCATCTTATCAAT+TGG - chr5_1:41243017-41243036 Msa0731090:CDS 35.0%
! AGTGTTGAGTATGGTAGAAA+TGG + chr5_1:41243130-41243149 None:intergenic 35.0%
GTAGTATGAACTTTGCATCA+TGG + chr5_1:41243273-41243292 None:intergenic 35.0%
CGAAAAGTAAACGTCACAAA+AGG + chr5_1:41243523-41243542 None:intergenic 35.0%
CCCTATCAAGAATATCTCTT+TGG - chr5_1:41243585-41243604 Msa0731090:intron 35.0%
TGTCTTCGAACATTAGCTAA+AGG + chr5_1:41244051-41244070 None:intergenic 35.0%
GCTTAATGCTTAAAGGTAGT+AGG - chr5_1:41244416-41244435 Msa0731090:intron 35.0%
TAATGCTTAAAGGTAGTAGG+TGG - chr5_1:41244419-41244438 Msa0731090:intron 35.0%
ACACTTAAGAGGAAGATTGT+CGG - chr5_1:41244588-41244607 Msa0731090:intron 35.0%
AAAGAGTGATTCGATAGTGA+TGG + chr5_1:41244664-41244683 None:intergenic 35.0%
TTGATGTACACGTGTTAAGT+GGG + chr5_1:41244709-41244728 None:intergenic 35.0%
TTTGATGTACACGTGTTAAG+TGG + chr5_1:41244710-41244729 None:intergenic 35.0%
!! TGCTGATTCTACCAATTCAT+AGG - chr5_1:41244851-41244870 Msa0731090:intron 35.0%
TATCTCTCTTTCCTTTCTTG+AGG - chr5_1:41245002-41245021 Msa0731090:intron 35.0%
!! GCAATTGTCACTTTGAAAAC+AGG - chr5_1:41245085-41245104 Msa0731090:intron 35.0%
TTTCTGCATGCAGGTTTATA+AGG - chr5_1:41245200-41245219 Msa0731090:intron 35.0%
GAAGTCACTGTCAGTAATAT+GGG - chr5_1:41245236-41245255 Msa0731090:intron 35.0%
CGCAAAATAGTGAAAATAGG+AGG + chr5_1:41245742-41245761 None:intergenic 35.0%
TTGGTCCTTCTTTCGATATT+TGG - chr5_1:41245794-41245813 Msa0731090:intron 35.0%
! TGCTTTTCAGTGTTATGTTG+TGG - chr5_1:41246268-41246287 Msa0731090:intron 35.0%
GTTGGATTGAAGAACAAGAT+CGG - chr5_1:41241916-41241935 Msa0731090:intron 35.0%
TATATTTAATCTCTGGCGCA+TGG - chr5_1:41246517-41246536 Msa0731090:intron 35.0%
!!! GAACGCTTTTTTCTTTGGTT+TGG - chr5_1:41246552-41246571 Msa0731090:intron 35.0%
TCACTCCCTGTAATTCAATA+TGG + chr5_1:41246668-41246687 None:intergenic 35.0%
GATTGCATATCAAGTAACTC+TGG + chr5_1:41246773-41246792 None:intergenic 35.0%
CTGATATTCATTCACTACGA+AGG - chr5_1:41246823-41246842 Msa0731090:intron 35.0%
TATTCATTCACTACGAAGGT+TGG - chr5_1:41246827-41246846 Msa0731090:intron 35.0%
! GAAAAACTTCCGCTAGATTT+TGG - chr5_1:41247365-41247384 Msa0731090:intron 35.0%
CCATAGTTTCCAAAATCTAG+CGG + chr5_1:41247377-41247396 None:intergenic 35.0%
ACATAATGTTCACATGACTC+AGG + chr5_1:41247506-41247525 None:intergenic 35.0%
CATTATGTGTAGTCCCAATA+AGG - chr5_1:41247518-41247537 Msa0731090:intron 35.0%
! AGAGGTTACTAGTCTCATTT+GGG + chr5_1:41247711-41247730 None:intergenic 35.0%
! AAGAGGTTACTAGTCTCATT+TGG + chr5_1:41247712-41247731 None:intergenic 35.0%
GGGTTGAGACAAAAAAAAAG+AGG + chr5_1:41247729-41247748 None:intergenic 35.0%
!!! TTTTTTTTGTCTCAACCCTC+CGG - chr5_1:41247731-41247750 Msa0731090:CDS 35.0%
!! TTTGAATCATCGGTTTGAAC+GGG + chr5_1:41248254-41248273 None:intergenic 35.0%
!! GTTTGAATCATCGGTTTGAA+CGG + chr5_1:41248255-41248274 None:intergenic 35.0%
!! GTTTGGTTGGTTTGAATCAT+CGG + chr5_1:41248264-41248283 None:intergenic 35.0%
!! GGGTTTAAACTGGTTGTTTT+GGG + chr5_1:41248324-41248343 None:intergenic 35.0%
! TTGTCAATTCGGGTTTAAAC+TGG + chr5_1:41248334-41248353 None:intergenic 35.0%
GATGTTCTGATTGTCAATTC+GGG + chr5_1:41248344-41248363 None:intergenic 35.0%
GGATGTTCTGATTGTCAATT+CGG + chr5_1:41248345-41248364 None:intergenic 35.0%
TTGAAATCGAATATGGACGT+TGG - chr5_1:41248457-41248476 Msa0731090:CDS 35.0%
ATCCTCCAATCCAAAGAAAA+AGG + chr5_1:41248674-41248693 None:intergenic 35.0%
TGTACATTTAGAAGCTGTGA+TGG + chr5_1:41248702-41248721 None:intergenic 35.0%
! GGAATCTGACAATGTTTTCT+TGG + chr5_1:41248909-41248928 None:intergenic 35.0%
CAAGTAACTCTAGTTATGCT+TGG + chr5_1:41248930-41248949 None:intergenic 35.0%
! TTTTCTGCTTCTAATTTCCG+CGG - chr5_1:41249134-41249153 Msa0731090:intron 35.0%
! TCAGTTAAAGCATCAAGCTT+GGG + chr5_1:41249393-41249412 None:intergenic 35.0%
! ATCAGTTAAAGCATCAAGCT+TGG + chr5_1:41249394-41249413 None:intergenic 35.0%
TACTACTTCTCCTTTGTTCA+TGG + chr5_1:41249571-41249590 None:intergenic 35.0%
AGTACAACCTTTCATAATCC+AGG - chr5_1:41249587-41249606 Msa0731090:CDS 35.0%
AATGTCTTTCTTTCTCTACC+AGG - chr5_1:41249697-41249716 Msa0731090:five_prime_UTR 35.0%
CACATAGTCACTTGAAGGAA+TGG + chr5_1:41240770-41240789 None:intergenic 40.0%
CATTCCTTCAAGTGACTATG+TGG - chr5_1:41240768-41240787 Msa0731090:CDS 40.0%
CATAAGTAGCATGGAGAACA+AGG - chr5_1:41240856-41240875 Msa0731090:CDS 40.0%
GAAGGTTCTCTTGATTCTTG+AGG + chr5_1:41240991-41241010 None:intergenic 40.0%
CAAGAATCAAGAGAACCTTC+TGG - chr5_1:41240991-41241010 Msa0731090:intron 40.0%
! AAAATGTCGGCTGCGAAAAA+AGG - chr5_1:41241470-41241489 Msa0731090:intron 40.0%
ACAGGCTTATGTTCAACAAC+TGG - chr5_1:41241561-41241580 Msa0731090:intron 40.0%
TAGATTGAAGCTCATGCAGT+TGG - chr5_1:41241591-41241610 Msa0731090:intron 40.0%
GTTTCTGTATAAACCCTGCA+AGG + chr5_1:41241739-41241758 None:intergenic 40.0%
TTCATCTACTTGTCGAGAGT+AGG - chr5_1:41241991-41242010 Msa0731090:intron 40.0%
AATGAAAGCAGAAGCTGCAA+AGG - chr5_1:41242040-41242059 Msa0731090:intron 40.0%
! GAACGCCTTTTTCTTTGGAT+AGG - chr5_1:41242107-41242126 Msa0731090:intron 40.0%
! CTTATGATTTGTCAGCTCAG+TGG + chr5_1:41242382-41242401 None:intergenic 40.0%
! AGGACATGTTTCTATAGCGT+CGG - chr5_1:41242493-41242512 Msa0731090:intron 40.0%
CTGAAGATGCACTGTCAATA+GGG - chr5_1:41242655-41242674 Msa0731090:intron 40.0%
TGTTGTTGATCATACTCTGC+TGG + chr5_1:41242692-41242711 None:intergenic 40.0%
ATCACACATAACATGTGTCG+TGG - chr5_1:41242852-41242871 Msa0731090:intron 40.0%
TTCGCACTCTTAGTTCATTG+TGG - chr5_1:41243087-41243106 Msa0731090:intron 40.0%
ATGATGTGTCAATTACGCTG+AGG - chr5_1:41243767-41243786 Msa0731090:CDS 40.0%
GTGGTGTCTAAATTTCGTAG+AGG - chr5_1:41244446-41244465 Msa0731090:intron 40.0%
TGGATGAACTCACACTTAAG+AGG - chr5_1:41244577-41244596 Msa0731090:intron 40.0%
CGATGTTGTCCAGAATGTTA+AGG - chr5_1:41244615-41244634 Msa0731090:intron 40.0%
AGTGGGTGGTAAACTCTATA+TGG + chr5_1:41244692-41244711 None:intergenic 40.0%
AAGGGAACAGAAGAAAGAGT+AGG + chr5_1:41245041-41245060 None:intergenic 40.0%
TACTCTTTCTTCTGTTCCCT+TGG - chr5_1:41245040-41245059 Msa0731090:intron 40.0%
CGAAGTCACTGTCAGTAATA+TGG - chr5_1:41245235-41245254 Msa0731090:intron 40.0%
ATATTTCTTCGGACGATACG+AGG + chr5_1:41245497-41245516 None:intergenic 40.0%
TAGTTCAAAACCACGATGGA+TGG - chr5_1:41245953-41245972 Msa0731090:intron 40.0%
!!! CGCTTTTTTCTTTGGTTTGG+AGG - chr5_1:41246555-41246574 Msa0731090:intron 40.0%
TGTACGTTTAGAAGCTGTGA+TGG + chr5_1:41246588-41246607 None:intergenic 40.0%
CTTAGGTACAACGATCTGTA+AGG + chr5_1:41247255-41247274 None:intergenic 40.0%
!! TCAGTTAAAGCATCGAGCTT+AGG + chr5_1:41247272-41247291 None:intergenic 40.0%
CAGCTTGAAGAGAGGATAAA+CGG + chr5_1:41247322-41247341 None:intergenic 40.0%
CTGAAGATGCTCTAACAGAA+GGG - chr5_1:41247339-41247358 Msa0731090:CDS 40.0%
!! CCGCTAGATTTTGGAAACTA+TGG - chr5_1:41247374-41247393 Msa0731090:intron 40.0%
TGGAAACTATGGCTTTCAGA+TGG - chr5_1:41247385-41247404 Msa0731090:intron 40.0%
AGCAACTCGGAAACCTTATT+GGG + chr5_1:41247534-41247553 None:intergenic 40.0%
TAGCAACTCGGAAACCTTAT+TGG + chr5_1:41247535-41247554 None:intergenic 40.0%
! AAGGAGGCATAATAGCAACT+CGG + chr5_1:41247547-41247566 None:intergenic 40.0%
AAGCATATTTCCCTGAGAAC+CGG + chr5_1:41247753-41247772 None:intergenic 40.0%
TGCTTGTGAGCTTGATAGAA+AGG - chr5_1:41247768-41247787 Msa0731090:intron 40.0%
! ATGAACTAAGAGTGCGAAGA+CGG + chr5_1:41243085-41243104 None:intergenic 40.0%
TTCGCACTCTTAGTTCATTG+TGG - chr5_1:41243087-41243106 Msa0731090:intron 40.0%
!! CCTAAGTTGAGTGTTGAGTA+GGG + chr5_1:41248135-41248154 None:intergenic 40.0%
!! TCCTAAGTTGAGTGTTGAGT+AGG + chr5_1:41248136-41248155 None:intergenic 40.0%
! CGGGTTTAAACTGGTTGTTT+TGG + chr5_1:41248325-41248344 None:intergenic 40.0%
AGCTACTCTCAACAAGTAGA+TGG + chr5_1:41248554-41248573 None:intergenic 40.0%
TCTATTTAATCTCTGGCGCA+TGG - chr5_1:41248631-41248650 Msa0731090:intron 40.0%
! GAGCACCTTTTTCTTTGGAT+TGG - chr5_1:41248666-41248685 Msa0731090:intron 40.0%
!! CACCTTTTTCTTTGGATTGG+AGG - chr5_1:41248669-41248688 Msa0731090:intron 40.0%
!! ATTTAGAAGCTGTGATGGAC+GGG + chr5_1:41248697-41248716 None:intergenic 40.0%
! CATTTAGAAGCTGTGATGGA+CGG + chr5_1:41248698-41248717 None:intergenic 40.0%
ATAACCAGCACATCGAAATG+TGG - chr5_1:41248824-41248843 Msa0731090:intron 40.0%
TAACCAGCACATCGAAATGT+GGG - chr5_1:41248825-41248844 Msa0731090:intron 40.0%
CTTCAAGAGAGGATAATCGA+AGG + chr5_1:41249440-41249459 None:intergenic 40.0%
CTGAAGATGCTCTAACACAA+GGG - chr5_1:41249460-41249479 Msa0731090:intron 40.0%
CCATAGTTTCCGAAATCCAA+GGG + chr5_1:41249531-41249550 None:intergenic 40.0%
GTCTCTTGATCATCTCCAGA+AGG + chr5_1:41241009-41241028 None:intergenic 45.0%
ACGTCCGGAACAATAAACTC+AGG - chr5_1:41241786-41241805 Msa0731090:CDS 45.0%
TCCTGTCATGTTTCGAAGCA+GGG - chr5_1:41241865-41241884 Msa0731090:CDS 45.0%
!! CAAAGAAAAAGGCGTTCGAC+CGG + chr5_1:41242104-41242123 None:intergenic 45.0%
! CGCCTTTTTCTTTGGATAGG+AGG - chr5_1:41242110-41242129 Msa0731090:intron 45.0%
CTTCGTCTCTTGCGGTTATA+TGG - chr5_1:41242345-41242364 Msa0731090:CDS 45.0%
CGCTATAGAAACATGTCCTG+AGG + chr5_1:41242492-41242511 None:intergenic 45.0%
CTTGCTGAGATGATAAACGC+AGG + chr5_1:41242635-41242654 None:intergenic 45.0%
GCTGAAGATGCACTGTCAAT+AGG - chr5_1:41242654-41242673 Msa0731090:intron 45.0%
AGATGCACTGTCAATAGGGT+TGG - chr5_1:41242659-41242678 Msa0731090:intron 45.0%
CAACATTCAAGCTGATCCCT+TGG - chr5_1:41242707-41242726 Msa0731090:intron 45.0%
CAAGCTGATCCCTTGGATTT+CGG - chr5_1:41242714-41242733 Msa0731090:intron 45.0%
CCGTAGTTTCCGAAATCCAA+GGG + chr5_1:41242726-41242745 None:intergenic 45.0%
CCCTTGGATTTCGGAAACTA+CGG - chr5_1:41242723-41242742 Msa0731090:intron 45.0%
TACTGCTTCTCCTTTGTCCA+TGG + chr5_1:41242766-41242785 None:intergenic 45.0%
GACAAAGGAGAAGCAGTAGA+AGG - chr5_1:41242768-41242787 Msa0731090:intron 45.0%
TCAATTGGTCAAGCTGCTCA+AGG - chr5_1:41243032-41243051 Msa0731090:CDS 45.0%
TCTGCTTTGATGTGTCAGCT+TGG + chr5_1:41244234-41244253 None:intergenic 45.0%
AAAGGTAGTAGGTGGAGATG+TGG - chr5_1:41244427-41244446 Msa0731090:intron 45.0%
AGTGTGAGTTCATCCACACA+AGG + chr5_1:41244573-41244592 None:intergenic 45.0%
CGGCAATGACCTTAACATTC+TGG + chr5_1:41244627-41244646 None:intergenic 45.0%
GAGTGATTCGATAGTGATGG+AGG + chr5_1:41244661-41244680 None:intergenic 45.0%
ATGTACACGTGTTAAGTGGG+TGG + chr5_1:41244706-41244725 None:intergenic 45.0%
AGGCAAGTATCATCCGTTGA+AGG + chr5_1:41246130-41246149 None:intergenic 45.0%
CAAGTAACTCTGGCTGTGTT+TGG + chr5_1:41246763-41246782 None:intergenic 45.0%
CAATTGGCATCTCTCACACT+TGG + chr5_1:41246909-41246928 None:intergenic 45.0%
AGCATCTTCAGCTTGAAGAG+AGG + chr5_1:41247330-41247349 None:intergenic 45.0%
GCTGAAGATGCTCTAACAGA+AGG - chr5_1:41247338-41247357 Msa0731090:CDS 45.0%
ATATTTCCCTGAGAACCGGA+GGG + chr5_1:41247749-41247768 None:intergenic 45.0%
TCACCTTAGGCAACAAACTC+TGG - chr5_1:41242989-41243008 Msa0731090:CDS 45.0%
CCCTACTCAACACTCAACTT+AGG - chr5_1:41248132-41248151 Msa0731090:intron 45.0%
!! CGGTAGAGCACCTTTTTCTT+TGG - chr5_1:41248661-41248680 Msa0731090:intron 45.0%
AACCAGCACATCGAAATGTG+GGG - chr5_1:41248826-41248845 Msa0731090:intron 45.0%
TCTCTTGGAAACCTCGTAAC+AGG - chr5_1:41249233-41249252 Msa0731090:intron 45.0%
AGCATCTTCAGCTTCAAGAG+AGG + chr5_1:41249451-41249470 None:intergenic 45.0%
GCTGAAGATGCTCTAACACA+AGG - chr5_1:41249459-41249478 Msa0731090:intron 45.0%
CAACATTCAAGCTGATCCCT+TGG - chr5_1:41242707-41242726 Msa0731090:intron 45.0%
CAAGCTGATCCCTTGGATTT+CGG - chr5_1:41242714-41242733 Msa0731090:intron 45.0%
CCCTTGGATTTCGGAAACTA+TGG - chr5_1:41242723-41242742 Msa0731090:intron 45.0%
GCCATAGTTTCCGAAATCCA+AGG + chr5_1:41249532-41249551 None:intergenic 45.0%
CGGAAACTATGGCTTTCAGA+TGG - chr5_1:41249539-41249558 Msa0731090:CDS 45.0%
TTGCCTTAGGCAAGAAACTC+TGG - chr5_1:41249724-41249743 Msa0731090:five_prime_UTR 45.0%
!! AAATAATTTATATAAAATAG+AGG + chr5_1:41241682-41241701 None:intergenic 5.0%
!!! TTTTAAAAAATATAATTTTG+AGG + chr5_1:41241842-41241861 None:intergenic 5.0%
!! TTAACTTATTAATAAATATT+AGG - chr5_1:41243919-41243938 Msa0731090:CDS 5.0%
CCTCCCACATAGTCACTTGA+AGG + chr5_1:41240775-41240794 None:intergenic 50.0%
CCTTCAAGTGACTATGTGGG+AGG - chr5_1:41240772-41240791 Msa0731090:CDS 50.0%
GTCGGTTATATGGGAACGTC+CGG - chr5_1:41241771-41241790 Msa0731090:CDS 50.0%
GTCCTGTCATGTTTCGAAGC+AGG - chr5_1:41241864-41241883 Msa0731090:CDS 50.0%
TCCCTGCTTCGAAACATGAC+AGG + chr5_1:41241869-41241888 None:intergenic 50.0%
CTCTGGCGTATGGAAATCAC+CGG - chr5_1:41242082-41242101 Msa0731090:intron 50.0%
! CGGTCGAACGCCTTTTTCTT+TGG - chr5_1:41242102-41242121 Msa0731090:intron 50.0%
!! AAGCGTGTGTTGACTAGACG+AGG - chr5_1:41242399-41242418 Msa0731090:intron 50.0%
GCCGTAGTTTCCGAAATCCA+AGG + chr5_1:41242727-41242746 None:intergenic 50.0%
CGGAAACTACGGCTTTCAGA+TGG - chr5_1:41242734-41242753 Msa0731090:intron 50.0%
CTTTGCAGGCAGATCACCTT+AGG - chr5_1:41242976-41242995 Msa0731090:CDS 50.0%
TCAAGCTGCTCAAGGCTTGT+TGG - chr5_1:41243040-41243059 Msa0731090:CDS 50.0%
!! TGCTCAAGGCTTGTTGGCTA+TGG - chr5_1:41243046-41243065 Msa0731090:CDS 50.0%
!! GCTCAAGGCTTGTTGGCTAT+GGG - chr5_1:41243047-41243066 Msa0731090:CDS 50.0%
!! CTCAAGGCTTGTTGGCTATG+GGG - chr5_1:41243048-41243067 Msa0731090:CDS 50.0%
!! TCAAGGCTTGTTGGCTATGG+GGG - chr5_1:41243049-41243068 Msa0731090:CDS 50.0%
TCCACGAACTCTGCAACAAG+TGG - chr5_1:41244503-41244522 Msa0731090:intron 50.0%
! TCCACTTGTTGCAGAGTTCG+TGG + chr5_1:41244507-41244526 None:intergenic 50.0%
AACAAGTGGAATCAGAGCCC+TGG - chr5_1:41244517-41244536 Msa0731090:intron 50.0%
TCCCTCACTTAGCCTAACCA+GGG + chr5_1:41244537-41244556 None:intergenic 50.0%
GCAAGAGTGAGATCCTTGTG+TGG - chr5_1:41244557-41244576 Msa0731090:intron 50.0%
TTAAGGTCATTGCCGCTCCT+CGG - chr5_1:41244632-41244651 Msa0731090:intron 50.0%
! ACAAGCAACGCACTGACCAA+AGG + chr5_1:41244776-41244795 None:intergenic 50.0%
TTGCGGTTGGGTAACTCAAC+AGG - chr5_1:41245420-41245439 Msa0731090:intron 50.0%
!! CCACGATGGATGGACTGAAA+CGG - chr5_1:41245963-41245982 Msa0731090:intron 50.0%
CATATTTCCCTGAGAACCGG+AGG + chr5_1:41247750-41247769 None:intergenic 50.0%
GGTGATCTGCCTGTAGAGAA+AGG + chr5_1:41247970-41247989 None:intergenic 50.0%
CTCTACAGGCAGATCACCTT+AGG - chr5_1:41247972-41247991 Msa0731090:intron 50.0%
!! ACGCCAGAGTTTGTTGCCTA+AGG + chr5_1:41247991-41248010 None:intergenic 50.0%
ACAATTGCGCAAGCTGCTCA+AGG - chr5_1:41248028-41248047 Msa0731090:intron 50.0%
CGTTGGATTGAAGAGCGAGA+TGG - chr5_1:41248474-41248493 Msa0731090:intron 50.0%
CTCTGGCGCATGGAAAACAT+CGG - chr5_1:41248641-41248660 Msa0731090:intron 50.0%
ATCCCCACATTTCGATGTGC+TGG + chr5_1:41248831-41248850 None:intergenic 50.0%
ATGGCTGCTGCCATGAACAA+AGG - chr5_1:41249558-41249577 Msa0731090:CDS 50.0%
TCTACCAGGCAGATTGCCTT+AGG - chr5_1:41249711-41249730 Msa0731090:five_prime_UTR 50.0%
GCACCAGAGTTTCTTGCCTA+AGG + chr5_1:41249730-41249749 None:intergenic 50.0%
ACGTCAAGCACAGAATCGCG+CGG - chr5_1:41241440-41241459 Msa0731090:intron 55.0%
CTTTCAGATGGCTGCTGCCA+TGG - chr5_1:41242746-41242765 Msa0731090:intron 55.0%
ATGGCTGCTGCCATGGACAA+AGG - chr5_1:41242753-41242772 Msa0731090:intron 55.0%
TTGCAGAGTTCGTGGAGCAG+CGG + chr5_1:41244499-41244518 None:intergenic 55.0%
GTGGAATCAGAGCCCTGGTT+AGG - chr5_1:41244522-41244541 Msa0731090:intron 55.0%
AGCCCTGGTTAGGCTAAGTG+AGG - chr5_1:41244532-41244551 Msa0731090:intron 55.0%
GCCCTGGTTAGGCTAAGTGA+GGG - chr5_1:41244533-41244552 Msa0731090:intron 55.0%
CTCCCTCACTTAGCCTAACC+AGG + chr5_1:41244538-41244557 None:intergenic 55.0%
! GATAGTGATGGAGGAGTCCG+AGG + chr5_1:41244652-41244671 None:intergenic 55.0%
CCGTTTCAGTCCATCCATCG+TGG + chr5_1:41245966-41245985 None:intergenic 55.0%
TCTCAACCCTCCGGTTCTCA+GGG - chr5_1:41247740-41247759 Msa0731090:CDS 55.0%
!! TGCTCAAGGCTTGCTGGCTA+TGG - chr5_1:41248042-41248061 Msa0731090:intron 55.0%
!! GCTCAAGGCTTGCTGGCTAT+GGG - chr5_1:41248043-41248062 Msa0731090:intron 55.0%
!! CTCAAGGCTTGCTGGCTATG+GGG - chr5_1:41248044-41248063 Msa0731090:intron 55.0%
!! TCAAGGCTTGCTGGCTATGG+GGG - chr5_1:41248045-41248064 Msa0731090:intron 55.0%
!! GAACCAGTAGGGGTGTTGAC+AGG - chr5_1:41248219-41248238 Msa0731090:CDS 55.0%
GTACCTGTCAACACCCCTAC+TGG + chr5_1:41248225-41248244 None:intergenic 55.0%
CTTGCCTAAGGCAATCTGCC+TGG + chr5_1:41249718-41249737 None:intergenic 55.0%
GCGCGGCTGCTCGAAAATGT+CGG - chr5_1:41241457-41241476 Msa0731090:intron 60.0%
AGTTCGTGGAGCAGCGGAAG+CGG + chr5_1:41244493-41244512 None:intergenic 60.0%
TGATGGAGGAGTCCGAGGAG+CGG + chr5_1:41244647-41244666 None:intergenic 60.0%
GTCTCAACCCTCCGGTTCTC+AGG - chr5_1:41247739-41247758 Msa0731090:CDS 60.0%
GCAAGCTGCTCAAGGCTTGC+TGG - chr5_1:41248036-41248055 Msa0731090:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 41240595 41249767 41240595 ID=Msa0731090;Name=Msa0731090
chr5_1 mRNA 41240595 41249767 41240595 ID=Msa0731090-mRNA-1;Parent=Msa0731090;Name=Msa0731090-mRNA-1;_AED=0.18;_eAED=0.19;_QI=157|0.76|0.71|1|1|1|14|0|728
chr5_1 exon 41240595 41240639 41240595 ID=Msa0731090-mRNA-1:exon:12015;Parent=Msa0731090-mRNA-1
chr5_1 exon 41240754 41240981 41240754 ID=Msa0731090-mRNA-1:exon:12014;Parent=Msa0731090-mRNA-1
chr5_1 exon 41241646 41241917 41241646 ID=Msa0731090-mRNA-1:exon:12013;Parent=Msa0731090-mRNA-1
chr5_1 exon 41242250 41242382 41242250 ID=Msa0731090-mRNA-1:exon:12012;Parent=Msa0731090-mRNA-1
chr5_1 exon 41242908 41243102 41242908 ID=Msa0731090-mRNA-1:exon:12011;Parent=Msa0731090-mRNA-1
chr5_1 exon 41243760 41244031 41243760 ID=Msa0731090-mRNA-1:exon:12010;Parent=Msa0731090-mRNA-1
chr5_1 exon 41247240 41247378 41247240 ID=Msa0731090-mRNA-1:exon:12009;Parent=Msa0731090-mRNA-1
chr5_1 exon 41247559 41247786 41247559 ID=Msa0731090-mRNA-1:exon:12008;Parent=Msa0731090-mRNA-1
chr5_1 exon 41248205 41248476 41248205 ID=Msa0731090-mRNA-1:exon:12007;Parent=Msa0731090-mRNA-1
chr5_1 exon 41248555 41248618 41248555 ID=Msa0731090-mRNA-1:exon:12006;Parent=Msa0731090-mRNA-1
chr5_1 exon 41248720 41248797 41248720 ID=Msa0731090-mRNA-1:exon:12005;Parent=Msa0731090-mRNA-1
chr5_1 exon 41248871 41248930 41248871 ID=Msa0731090-mRNA-1:exon:12004;Parent=Msa0731090-mRNA-1
chr5_1 exon 41249312 41249386 41249312 ID=Msa0731090-mRNA-1:exon:12003;Parent=Msa0731090-mRNA-1
chr5_1 exon 41249485 41249767 41249485 ID=Msa0731090-mRNA-1:exon:12002;Parent=Msa0731090-mRNA-1
chr5_1 five_prime_UTR 41249611 41249767 41249611 ID=Msa0731090-mRNA-1:five_prime_utr;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41249485 41249610 41249485 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41249312 41249386 41249312 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41248871 41248930 41248871 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41248720 41248797 41248720 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41248555 41248618 41248555 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41248205 41248476 41248205 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41247559 41247786 41247559 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41247240 41247378 41247240 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41243760 41244031 41243760 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41242908 41243102 41242908 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41242250 41242382 41242250 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41241646 41241917 41241646 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41240754 41240981 41240754 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
chr5_1 CDS 41240595 41240639 41240595 ID=Msa0731090-mRNA-1:cds;Parent=Msa0731090-mRNA-1
Gene Sequence

>Msa0731090

ATGAACATGTATGAGCCATTCCTTCAAGTGACTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAAGTAGCATGGAGAACAAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTACTACGACGTCAAGCACAGAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGCTTATGTTCAACAACTGGAAACGAGTAGATTGAAGCTCATGCAGTTGGAATTAGATATCGAGAAAACAAGAAAACAGGGTTTATACAGAAACAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCAACAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACATCTTCATCTACTTGTCGAGAGTAGGTTGAACCAATACTCAAATCTTTTTCAAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATAGGAGGATCTCGTCCATCACAAATTCTAAATATCGTGGTACCGAAACTTGAGAATTTGAATGATCAACAAATTGCTAGCATTAACAACCTGCGTTTATCATCTCAGCAAGCTGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCAATTGGTCAAGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCGGCAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACAACTTCATCTACTTGTCGAGAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGATTGATGCTTTATATTTAATCTCTGGCGCATGGAAAGCGCCATTAGAACGCTTTTTTCTTTGGTTTGGAGGATCATGTCCATCACAGCTTCTAAACATCGTTGTACCTAAGCTCGATGCTTTAACTGATCAACAAATTGTTAGCATTAACAATCTCCGTTTATCCTCTCTTCAAGCTGAAGATGCTCTAACAGAAGGGTTAGAAAAACTTCCGCTAGATTTTGGAAACTATGGCTTTCAGATGGCTGCTGTCATGAACAAAGTAGAAGCAGTAGAAAGTTTTGTAATCCAGGCAGATCACCTTAGGCAACAAACTCTGGCGTACATGTCTCGTATCTTGACAATTGCGCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGATTACTTTCACCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTATATCTTTATTTGAAATCGAATATGGACGTTGGATTGAAGAGCGAGATGGACAAAACGAAGAACTAAGAAATGCTTTGCATAATAATGCATCTGATATACAGCTCCATCTACTTGTTGAGAGTAGCTTGAACCAATACTCAGATCTTTTCAGAATGAAAGCTGAAGCTGCAAAGACTGATGTTTTCTATTTAATCTCTGGCGCATGGAAAACATCGGTAGAGCACCTTTTTCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAATATCATTGTTCCCAAGCTTGATGCTTTAACTGATCGACAAATTGTTGACATCAACAACCTTCGATTATCCTCTCTTGAAGCTGAAGATGCTCTAACACAAGGGTTAGAAAGATTGAAGCAGACTATGATCAGCAACATTCAAGCTGATCCCTTGGATTTCGGAAACTATGGCTTTCAGATGGCTGCTGCCATGAACAAAGGAGAAGTAGTACAACCTTTCATAATCCAGATTGCCTTAGGCAAGAAACTCTGGTGCAGATGTCTCGCATTCTAA
Protein sequence

>Msa0731090

MNMYEPFLQVTMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRNSLLDVGYMGTSGTINSGISLFEIEYGRWIEEQDQQNEELRNALQTNASDIHLHLLVESRLNQYSNLFQMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIASINNLRLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSWISLFEIEYGRWIEEQDRQNEELRNALQTNASDIQLHLLVESSLNQYSNLFRMKAEAAKIDALYLISGAWKAPLERFFLWFGGSCPSQLLNIVVPKLDALTDQQIVSINNLRLSSLQAEDALTEGLEKLPLDFGNYGFQMAAVMNKVEAVESFVIQADHLRQQTLAYMSRILTIAQAAQGLLAMGDYFHRLRTLSSLWTARISLFEIEYGRWIEERDGQNEELRNALHNNASDIQLHLLVESSLNQYSDLFRMKAEAAKTDVFYLISGAWKTSVEHLFLWIGGSRPSQLLNIIVPKLDALTDRQIVDINNLRLSSLEAEDALTQGLERLKQTMISNIQADPLDFGNYGFQMAAAMNKGEVVQPFIIQIALGKKLWCRCLAF*