AlfalfaGEDB | Msa0809420

M. sativa cultivar zhongmu-4 / Msa0809420

KEGG: K14431
GO: GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809420	XP_003614897.2	96.648	358	12	0	16	373	1	358	0.0	723

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809420	sp\|Q93ZE2\|TGA7_ARATH	52.785	377	148	6	1	361	1	363	6.68e-122	359

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809420	G7K933	96.648	358	12	0	16	373	1	358	0.0	723

TFs/TRs:

Gene ID	Type	Classification
Msa0809420	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0731090	Msa0809420	0.857088	2.070370e-62	-8.615850e-47
Msa0809420	Msa0853310	0.891351	4.299110e-74	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809420	MtrunA17_Chr5g0424861	96.379	359	12	1	16	373	1	359	0.0	719
Msa0809420	MtrunA17_Chr3g0115371	65.143	350	114	4	16	361	1	346	1.05e-157	447
Msa0809420	MtrunA17_Chr5g0424851	80.603	232	44	1	141	371	1	232	3.35e-131	382
Msa0809420	MtrunA17_Chr5g0424851	74.882	211	53	0	146	356	220	430	9.68e-109	325
Msa0809420	MtrunA17_Chr3g0124601	49.587	363	172	3	4	361	2	358	2.71e-117	344
Msa0809420	MtrunA17_Chr8g0382861	47.126	348	177	4	14	361	13	353	2.23e-99	298
Msa0809420	MtrunA17_Chr8g0353501	51.568	287	128	2	82	361	181	463	1.26e-89	277
Msa0809420	MtrunA17_Chr7g0256211	50.871	287	130	3	82	361	167	449	7.33e-89	275
Msa0809420	MtrunA17_Chr2g0321431	51.429	280	129	2	82	361	194	466	7.59e-89	276
Msa0809420	MtrunA17_Chr7g0258321	47.020	302	149	3	69	361	161	460	4.79e-88	273
Msa0809420	MtrunA17_Chr1g0174701	42.037	383	196	7	4	361	122	503	1.60e-85	268
Msa0809420	MtrunA17_Chr4g0026401	45.981	311	155	5	52	361	160	458	1.89e-83	262
Msa0809420	MtrunA17_Chr5g0422771	44.631	298	154	2	71	361	168	461	4.01e-78	248
Msa0809420	MtrunA17_Chr1g0210151	46.367	289	149	3	77	360	49	336	2.90e-77	241
Msa0809420	MtrunA17_Chr3g0093451	43.827	162	84	3	84	238	48	209	1.76e-40	142
Msa0809420	MtrunA17_Chr1g0196951	31.000	200	115	5	163	357	59	240	3.49e-15	74.3
Msa0809420	MtrunA17_Chr7g0242651	25.698	179	117	3	188	354	45	219	2.27e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809420	AT1G77920.1	52.785	377	148	6	1	361	1	363	6.79e-123	359
Msa0809420	AT1G22070.1	50.538	372	159	4	14	365	17	383	8.01e-118	347
Msa0809420	AT5G10030.5	50.416	361	173	3	4	361	2	359	8.59e-116	341
Msa0809420	AT5G10030.3	50.416	361	173	3	4	361	2	359	8.59e-116	341
Msa0809420	AT5G10030.1	50.416	361	173	3	4	361	2	359	8.59e-116	341
Msa0809420	AT5G10030.4	50.416	361	173	3	4	361	2	359	8.59e-116	341
Msa0809420	AT5G10030.2	50.416	361	173	3	4	361	2	359	8.59e-116	341
Msa0809420	AT5G65210.5	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.7	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.3	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.1	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.2	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.4	48.919	370	182	4	4	369	2	368	3.07e-115	340
Msa0809420	AT5G65210.6	53.512	299	135	2	72	369	3	298	3.82e-105	311
Msa0809420	AT1G08320.2	47.095	327	154	6	46	361	8	326	2.03e-91	278
Msa0809420	AT1G08320.5	47.095	327	154	6	46	361	8	326	2.03e-91	278
Msa0809420	AT1G08320.1	47.095	327	154	6	46	361	132	450	6.47e-90	279
Msa0809420	AT1G08320.4	47.095	327	154	6	46	361	132	450	6.47e-90	279
Msa0809420	AT1G08320.3	47.095	327	154	6	46	361	132	450	6.47e-90	279
Msa0809420	AT5G06839.1	45.322	342	166	5	37	361	75	412	6.23e-86	266
Msa0809420	AT5G06950.2	48.951	286	136	2	82	361	46	327	7.05e-86	263
Msa0809420	AT5G06950.4	48.951	286	136	2	82	361	46	327	7.05e-86	263
Msa0809420	AT5G06950.1	48.951	286	136	2	82	361	46	327	7.05e-86	263
Msa0809420	AT5G06950.5	48.951	286	136	2	82	361	46	327	7.05e-86	263
Msa0809420	AT5G06950.3	48.951	286	136	2	82	361	46	327	7.05e-86	263
Msa0809420	AT5G06839.3	47.213	305	146	2	72	361	151	455	1.33e-85	267
Msa0809420	AT5G06839.2	44.606	343	168	5	37	361	75	413	9.09e-85	263
Msa0809420	AT3G12250.5	48.601	286	137	2	82	361	19	300	2.20e-84	259
Msa0809420	AT3G12250.6	48.601	286	137	2	82	361	46	327	3.91e-84	259
Msa0809420	AT3G12250.2	48.601	286	137	2	82	361	46	327	3.91e-84	259
Msa0809420	AT3G12250.7	48.601	286	137	2	82	361	46	327	3.91e-84	259
Msa0809420	AT3G12250.1	48.601	286	137	2	82	361	46	327	3.91e-84	259
Msa0809420	AT3G12250.3	48.601	286	137	2	82	361	40	321	4.95e-84	258
Msa0809420	AT3G12250.4	48.601	286	137	2	82	361	71	352	1.98e-83	258
Msa0809420	AT5G06960.2	48.252	286	138	2	82	361	46	327	5.48e-83	256
Msa0809420	AT5G06960.1	48.252	286	138	2	82	361	46	327	5.48e-83	256
Msa0809420	AT5G06960.3	48.252	286	138	2	82	361	26	307	5.68e-83	255
Msa0809420	AT1G68640.1	44.631	298	153	3	72	361	156	449	1.60e-72	233
Msa0809420	AT1G58330.1	29.381	194	114	6	178	354	36	223	1.94e-12	66.6

Find 73 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTAATTATTGCTTCTTAA+AGG	0.144893	5_3:+35810803	None:intergenic
TTTATTGGATGTCGGTTATA+TGG	0.184139	5_3:+35811978	Msa0809420:CDS
TCTTTGTTTGAAATTGAATA+TGG	0.229069	5_3:+35812108	Msa0809420:CDS
CAAGCTGATCCCTTGGATTT+CGG	0.267505	5_3:+35812931	Msa0809420:CDS
TTTATACAGAAACAGTTTAT+TGG	0.277561	5_3:+35811963	Msa0809420:CDS
ATTTCTTCAATATATATATA+TGG	0.278278	5_3:+35813434	Msa0809420:three_prime_UTR
CTTAATTATTGCTTCTTAAA+GGG	0.312736	5_3:+35810804	None:intergenic
TGCTCAAGGCTTGTTGGCTA+TGG	0.316587	5_3:+35813263	Msa0809420:CDS
ATCCTCCTATCCAAAGAAAA+AGG	0.354680	5_3:-35812329	None:intergenic
TTATGTTCATCTTCAACATT+GGG	0.356119	5_3:-35811054	None:intergenic
TCATTCAAATTCTCAAGTTT+CGG	0.363992	5_3:-35812802	None:intergenic
GCTGAAGATGCACTGTCAAT+AGG	0.369583	5_3:+35812871	Msa0809420:CDS
CTTATGTTCATCTTCAACAT+TGG	0.379233	5_3:-35811055	None:intergenic
GCTCAAGGCTTGTTGGCTAT+GGG	0.379556	5_3:+35813264	Msa0809420:CDS
CTAACCTGAGTTTATTGTTC+CGG	0.383626	5_3:-35812007	None:intergenic
CTCAACTAATCGCGCCGAAA+AGG	0.387136	5_3:+35810945	Msa0809420:CDS
TCAAGCTGCTCAAGGCTTGT+TGG	0.395796	5_3:+35813257	Msa0809420:CDS
ACAGGCTTATGTTCAACAAC+TGG	0.406023	5_3:+35811778	Msa0809420:intron
ACTACGGTTTGTATAGCTCT+TGG	0.411035	5_3:+35813503	Msa0809420:three_prime_UTR
CTTTCAGATGGCTGCTGCCA+TGG	0.412683	5_3:+35812963	Msa0809420:CDS
TATCGAGAAAACAAGAAAAC+AGG	0.417815	5_3:+35811838	Msa0809420:CDS
CTTTGCAGGCAGATCACCTT+AGG	0.420677	5_3:+35813193	Msa0809420:intron
TTATTGGATGTCGGTTATAT+GGG	0.423086	5_3:+35811979	Msa0809420:CDS
CCTCCCACATAGTCACTTGA+AGG	0.428980	5_3:-35810988	None:intergenic
AAGGTTCTCTTGATTCTTGA+GGG	0.435161	5_3:-35811203	None:intergenic
CCCTTGGATTTCGGAAACTA+CGG	0.436857	5_3:+35812940	Msa0809420:CDS
CAAGAATCAAGAGAACCTTC+TGG	0.437311	5_3:+35811207	Msa0809420:CDS
TACTGCTTCTCCTTTGTCCA+TGG	0.443791	5_3:-35812980	None:intergenic
CTGAAGATGCACTGTCAATA+GGG	0.444666	5_3:+35812872	Msa0809420:CDS
CTACGGTTTGTATAGCTCTT+GGG	0.447566	5_3:+35813504	Msa0809420:three_prime_UTR
GACAAAGGAGAAGCAGTAGA+AGG	0.456711	5_3:+35812985	Msa0809420:CDS
AGTGTTGAGTAGGGTAGAAA+TGG	0.460652	5_3:-35813344	None:intergenic
CAACATTCAAGCTGATCCCT+TGG	0.462368	5_3:+35812924	Msa0809420:CDS
TCTTAATTTGAGTGTTGAGT+AGG	0.465347	5_3:-35813354	None:intergenic
GTCGGTTATATGGGAACGTC+CGG	0.469360	5_3:+35811988	Msa0809420:CDS
GAAGGTTCTCTTGATTCTTG+AGG	0.474792	5_3:-35811204	None:intergenic
TGTTGTTGATCATACTCTGC+TGG	0.478454	5_3:-35812906	None:intergenic
TCTATTTAATCTCTGGCGTA+TGG	0.481044	5_3:+35812289	Msa0809420:CDS
ATGTCACGCATCTTATCAAT+TGG	0.485700	5_3:+35813234	Msa0809420:CDS
CTCAAGGCTTGTTGGCTATG+GGG	0.490238	5_3:+35813265	Msa0809420:CDS
CTTAATTTGAGTGTTGAGTA+GGG	0.496496	5_3:-35813353	None:intergenic
CATAAGTAGCATGGAGAACA+AGG	0.509417	5_3:+35811072	Msa0809420:CDS
CACATAGTCACTTGAAGGAA+TGG	0.522645	5_3:-35810983	None:intergenic
CATTCCTTCAAGTGACTATG+TGG	0.523116	5_3:+35810984	Msa0809420:CDS
TCAAGGCTTGTTGGCTATGG+GGG	0.523504	5_3:+35813266	Msa0809420:CDS
AGATGCACTGTCAATAGGGT+TGG	0.527361	5_3:+35812876	Msa0809420:CDS
ATAACAGAGTTTGTTGCCTA+AGG	0.529419	5_3:-35813209	None:intergenic
GAATCAAAATAACATAATGT+AGG	0.534066	5_3:-35810858	None:intergenic
TTGAAATTGAATATGGACGT+TGG	0.536052	5_3:+35812115	Msa0809420:CDS
TCAATTGGTCAAGCTGCTCA+AGG	0.536456	5_3:+35813249	Msa0809420:CDS
TTCGCACTCTTAGTTCATTG+TGG	0.540430	5_3:+35813304	Msa0809420:CDS
TATTCAAGAACCTGTTCCTA+AGG	0.542554	5_3:+35811245	Msa0809420:CDS
TAGATTGAAGCTCATGCAGT+TGG	0.542577	5_3:+35811808	Msa0809420:CDS
CGGAAACTACGGCTTTCAGA+TGG	0.543160	5_3:+35812951	Msa0809420:CDS
AATGAAAGCAGAAGCTGCAA+AGG	0.554661	5_3:+35812257	Msa0809420:CDS
AGAAACAGTTTATTGGATGT+CGG	0.555658	5_3:+35811970	Msa0809420:CDS
GTAGTATGAACTTTGCATCA+TGG	0.582510	5_3:-35813485	None:intergenic
GCCGTAGTTTCCGAAATCCA+AGG	0.586415	5_3:-35812941	None:intergenic
GAAGATGAACATAAGTAGCA+TGG	0.592197	5_3:+35811063	Msa0809420:CDS
TGTACATTTAGAATTTGTGA+TGG	0.598170	5_3:-35812357	None:intergenic
GCGCGGCTGCTCGAAAATGT+CGG	0.599361	5_3:+35811674	Msa0809420:CDS
ATGGCTGCTGCCATGGACAA+AGG	0.602885	5_3:+35812970	Msa0809420:CDS
GTCTCTTGATCATCTCCAGA+AGG	0.603267	5_3:-35811222	None:intergenic
ATGATGCAAAGTTCATACTA+CGG	0.611426	5_3:+35813487	Msa0809420:three_prime_UTR
CTCTGGCGTATGGAAATCAC+CGG	0.616184	5_3:+35812299	Msa0809420:CDS
TTCATCTACTTGTCGAGAGT+AGG	0.630773	5_3:+35812208	Msa0809420:CDS
CCGTAGTTTCCGAAATCCAA+GGG	0.636532	5_3:-35812940	None:intergenic
CCTTCAAGTGACTATGTGGG+AGG	0.650193	5_3:+35810988	Msa0809420:CDS
ATTCCTTCAAGTGACTATGT+GGG	0.664208	5_3:+35810985	Msa0809420:CDS
ACGTCCGGAACAATAAACTC+AGG	0.666698	5_3:+35812003	Msa0809420:CDS
CTTGCTGAGATGATAAACGC+AGG	0.683767	5_3:-35812849	None:intergenic
TATGTTCATCTTCAACATTG+GGG	0.698417	5_3:-35811053	None:intergenic
ACGTCAAGCACAGAATCGCG+CGG	0.719929	5_3:+35811657	Msa0809420:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATCAATATAAAATCATAATT+TGG	+	chr5_3:35813024-35813043	Msa0809420:intron	10.0%
!!	ATTTCTTCAATATATATATA+TGG	+	chr5_3:35813434-35813453	Msa0809420:three_prime_UTR	10.0%
!!	AAAAAGAGAAAATTAAAACT+TGG	-	chr5_3:35810831-35810850	None:intergenic	15.0%
!!	AGTAGAAAAAATTGAAATAA+CGG	+	chr5_3:35811286-35811305	Msa0809420:intron	15.0%
!!!	AATTAATTTTTTTTGACAGA+AGG	-	chr5_3:35811557-35811576	None:intergenic	15.0%
!!	GTTGTAAAAATTGAATTTAT+AGG	+	chr5_3:35811709-35811728	Msa0809420:intron	15.0%
!!	TAAAAATTGAATTTATAGGA+AGG	+	chr5_3:35811713-35811732	Msa0809420:intron	15.0%
!!	ATAAGATAATAGTAATTAGT+GGG	-	chr5_3:35812383-35812402	None:intergenic	15.0%
!!	AATAAGATAATAGTAATTAG+TGG	-	chr5_3:35812384-35812403	None:intergenic	15.0%
!!	GAATCAAAATAACATAATGT+AGG	-	chr5_3:35810861-35810880	None:intergenic	20.0%
!!!	AGATATGACTTTTCTTTTTA+TGG	+	chr5_3:35810890-35810909	Msa0809420:five_prime_UTR	20.0%
!!!	GAATTTCTATTTTGTTTCTA+TGG	+	chr5_3:35811110-35811129	Msa0809420:intron	20.0%
!!!	ATAGTTTTAACATAGTATCA+TGG	+	chr5_3:35811517-35811536	Msa0809420:intron	20.0%
!!	TTTATATAAAATAGAGGAAG+AGG	-	chr5_3:35811893-35811912	None:intergenic	20.0%
!!	TTTATACAGAAACAGTTTAT+TGG	+	chr5_3:35811963-35811982	Msa0809420:CDS	20.0%
!!!	TCTTTGTTTGAAATTGAATA+TGG	+	chr5_3:35812108-35812127	Msa0809420:CDS	20.0%
!!	TTTGAAAAAGATTTGAGTAT+TGG	-	chr5_3:35812239-35812258	None:intergenic	20.0%
!!	TATAGTCTATATTCGTTAAT+AGG	+	chr5_3:35812405-35812424	Msa0809420:intron	20.0%
!	TTATGTTCATCTTCAACATT+GGG	-	chr5_3:35811057-35811076	None:intergenic	25.0%
!!	TGATGTAATTTTATCACCTT+AGG	-	chr5_3:35811264-35811283	None:intergenic	25.0%
!	TTAAAGAGAATTGTTTAGCT+TGG	+	chr5_3:35811575-35811594	Msa0809420:intron	25.0%
!	GTTTCTCAATATCTATGTAT+AGG	+	chr5_3:35811627-35811646	Msa0809420:intron	25.0%
!!!	AAGGATGACGATTTTTTATA+TGG	-	chr5_3:35811869-35811888	None:intergenic	25.0%
!!	GATGTTTTCTATTTAATCTC+TGG	+	chr5_3:35812282-35812301	Msa0809420:CDS	25.0%
!!	TGTACATTTAGAATTTGTGA+TGG	-	chr5_3:35812360-35812379	None:intergenic	25.0%
!	TCGTTAATAGGTCAAAATAA+AGG	+	chr5_3:35812417-35812436	Msa0809420:intron	25.0%
!	ATCTGTAAGAAAAAGTCAAA+TGG	-	chr5_3:35812775-35812794	None:intergenic	25.0%
!	TCATTCAAATTCTCAAGTTT+CGG	-	chr5_3:35812805-35812824	None:intergenic	25.0%
!	TCATACATGTTCATCCTTTT+CGG	-	chr5_3:35810962-35810981	None:intergenic	30.0%
	TATGTTCATCTTCAACATTG+GGG	-	chr5_3:35811056-35811075	None:intergenic	30.0%
	CTTATGTTCATCTTCAACAT+TGG	-	chr5_3:35811058-35811077	None:intergenic	30.0%
!	AATTTTATCACCTTAGGAAC+AGG	-	chr5_3:35811258-35811277	None:intergenic	30.0%
	AAAGACGAGAAAAATAACAC+TGG	+	chr5_3:35811317-35811336	Msa0809420:intron	30.0%
	TTTGTATGTTTGTGATTCAC+AGG	+	chr5_3:35811760-35811779	Msa0809420:intron	30.0%
	TATCGAGAAAACAAGAAAAC+AGG	+	chr5_3:35811838-35811857	Msa0809420:CDS	30.0%
	ATAAAATAGAGGAAGAGGTA+AGG	-	chr5_3:35811888-35811907	None:intergenic	30.0%
	TTATCCATATTTATCCTTGC+AGG	+	chr5_3:35811939-35811958	Msa0809420:intron	30.0%
	TATCCATATTTATCCTTGCA+GGG	+	chr5_3:35811940-35811959	Msa0809420:intron	30.0%
	AGAAACAGTTTATTGGATGT+CGG	+	chr5_3:35811970-35811989	Msa0809420:CDS	30.0%
!	TTTATTGGATGTCGGTTATA+TGG	+	chr5_3:35811978-35811997	Msa0809420:CDS	30.0%
!	TTATTGGATGTCGGTTATAT+GGG	+	chr5_3:35811979-35811998	Msa0809420:CDS	30.0%
	TTGAAATTGAATATGGACGT+TGG	+	chr5_3:35812115-35812134	Msa0809420:CDS	30.0%
	ACGAATTTACAACTGTTTAG+AGG	+	chr5_3:35812530-35812549	Msa0809420:intron	30.0%
	AATTTAAACTTCGTCTCTTG+CGG	+	chr5_3:35812554-35812573	Msa0809420:intron	30.0%
!!	AGTAGAAGGTTTTGTAATTC+AGG	+	chr5_3:35812999-35813018	Msa0809420:CDS	30.0%
	TGTGTATTAGAATTCAAACG+TGG	+	chr5_3:35813101-35813120	Msa0809420:intron	30.0%
	GTGTATTAGAATTCAAACGT+GGG	+	chr5_3:35813102-35813121	Msa0809420:intron	30.0%
!!	CTTAATTTGAGTGTTGAGTA+GGG	-	chr5_3:35813356-35813375	None:intergenic	30.0%
!!	TCTTAATTTGAGTGTTGAGT+AGG	-	chr5_3:35813357-35813376	None:intergenic	30.0%
	ATGATGCAAAGTTCATACTA+CGG	+	chr5_3:35813487-35813506	Msa0809420:three_prime_UTR	30.0%
	ATTCCTTCAAGTGACTATGT+GGG	+	chr5_3:35810985-35811004	Msa0809420:CDS	35.0%
	GAAGATGAACATAAGTAGCA+TGG	+	chr5_3:35811063-35811082	Msa0809420:CDS	35.0%
	AAGGTTCTCTTGATTCTTGA+GGG	-	chr5_3:35811206-35811225	None:intergenic	35.0%
	TATTCAAGAACCTGTTCCTA+AGG	+	chr5_3:35811245-35811264	Msa0809420:CDS	35.0%
	TAGCTTGGAAGAGTTCATAA+TGG	+	chr5_3:35811590-35811609	Msa0809420:intron	35.0%
	AAACCCTGCAAGGATAAATA+TGG	-	chr5_3:35811946-35811965	None:intergenic	35.0%
	CTAACCTGAGTTTATTGTTC+CGG	-	chr5_3:35812010-35812029	None:intergenic	35.0%
	TCTATTTAATCTCTGGCGTA+TGG	+	chr5_3:35812289-35812308	Msa0809420:CDS	35.0%
	ATCCTCCTATCCAAAGAAAA+AGG	-	chr5_3:35812332-35812351	None:intergenic	35.0%
	TCAGCTCAGTGGTAAAATAA+TGG	-	chr5_3:35812588-35812607	None:intergenic	35.0%
!	TGTCATTTCATGTAAACCTC+AGG	+	chr5_3:35812690-35812709	Msa0809420:intron	35.0%
!!	TGACTTTTTCTTACAGATCG+TGG	+	chr5_3:35812777-35812796	Msa0809420:intron	35.0%
	TATTAGAATTCAAACGTGGG+TGG	+	chr5_3:35813105-35813124	Msa0809420:intron	35.0%
!	GCATTTTTCTTCTTCTTTGC+AGG	+	chr5_3:35813179-35813198	Msa0809420:intron	35.0%
!!	ATAACAGAGTTTGTTGCCTA+AGG	-	chr5_3:35813212-35813231	None:intergenic	35.0%
	ATGTCACGCATCTTATCAAT+TGG	+	chr5_3:35813234-35813253	Msa0809420:CDS	35.0%
	GTAGTATGAACTTTGCATCA+TGG	-	chr5_3:35813488-35813507	None:intergenic	35.0%
	CACATAGTCACTTGAAGGAA+TGG	-	chr5_3:35810986-35811005	None:intergenic	40.0%
	CATTCCTTCAAGTGACTATG+TGG	+	chr5_3:35810984-35811003	Msa0809420:CDS	40.0%
	CATAAGTAGCATGGAGAACA+AGG	+	chr5_3:35811072-35811091	Msa0809420:CDS	40.0%
	GAAGGTTCTCTTGATTCTTG+AGG	-	chr5_3:35811207-35811226	None:intergenic	40.0%
	CAAGAATCAAGAGAACCTTC+TGG	+	chr5_3:35811207-35811226	Msa0809420:CDS	40.0%
!	AAAATGTCGGCTGCGAAAAA+AGG	+	chr5_3:35811687-35811706	Msa0809420:CDS	40.0%
	ACAGGCTTATGTTCAACAAC+TGG	+	chr5_3:35811778-35811797	Msa0809420:intron	40.0%
	TAGATTGAAGCTCATGCAGT+TGG	+	chr5_3:35811808-35811827	Msa0809420:CDS	40.0%
	GTTTCTGTATAAACCCTGCA+AGG	-	chr5_3:35811956-35811975	None:intergenic	40.0%
	TTCATCTACTTGTCGAGAGT+AGG	+	chr5_3:35812208-35812227	Msa0809420:CDS	40.0%
	AATGAAAGCAGAAGCTGCAA+AGG	+	chr5_3:35812257-35812276	Msa0809420:CDS	40.0%
!	GAACGCCTTTTTCTTTGGAT+AGG	+	chr5_3:35812324-35812343	Msa0809420:CDS	40.0%
!	CTTATGATTTGTCAGCTCAG+TGG	-	chr5_3:35812599-35812618	None:intergenic	40.0%
!	AGGACATGTTTCTATAGCGT+CGG	+	chr5_3:35812710-35812729	Msa0809420:intron	40.0%
	CTGAAGATGCACTGTCAATA+GGG	+	chr5_3:35812872-35812891	Msa0809420:CDS	40.0%
	TGTTGTTGATCATACTCTGC+TGG	-	chr5_3:35812909-35812928	None:intergenic	40.0%
	ATCAGACATAACATGTGTCG+TGG	+	chr5_3:35813069-35813088	Msa0809420:intron	40.0%
	TTCGCACTCTTAGTTCATTG+TGG	+	chr5_3:35813304-35813323	Msa0809420:CDS	40.0%
!	AGTGTTGAGTAGGGTAGAAA+TGG	-	chr5_3:35813347-35813366	None:intergenic	40.0%
	ACTACGGTTTGTATAGCTCT+TGG	+	chr5_3:35813503-35813522	Msa0809420:three_prime_UTR	40.0%
	CTACGGTTTGTATAGCTCTT+GGG	+	chr5_3:35813504-35813523	Msa0809420:three_prime_UTR	40.0%
	GTCTCTTGATCATCTCCAGA+AGG	-	chr5_3:35811225-35811244	None:intergenic	45.0%
	ACGTCCGGAACAATAAACTC+AGG	+	chr5_3:35812003-35812022	Msa0809420:CDS	45.0%
	TCCTGTCATGTTTCGAAGCA+GGG	+	chr5_3:35812082-35812101	Msa0809420:intron	45.0%
!!	CAAAGAAAAAGGCGTTCGAC+CGG	-	chr5_3:35812321-35812340	None:intergenic	45.0%
!	CGCCTTTTTCTTTGGATAGG+AGG	+	chr5_3:35812327-35812346	Msa0809420:CDS	45.0%
	CTTCGTCTCTTGCGGTTATA+TGG	+	chr5_3:35812562-35812581	Msa0809420:intron	45.0%
	CGCTATAGAAACATGTCCTG+AGG	-	chr5_3:35812709-35812728	None:intergenic	45.0%
	CTTGCTGAGATGATAAACGC+AGG	-	chr5_3:35812852-35812871	None:intergenic	45.0%
	GCTGAAGATGCACTGTCAAT+AGG	+	chr5_3:35812871-35812890	Msa0809420:CDS	45.0%
	AGATGCACTGTCAATAGGGT+TGG	+	chr5_3:35812876-35812895	Msa0809420:CDS	45.0%
	CAACATTCAAGCTGATCCCT+TGG	+	chr5_3:35812924-35812943	Msa0809420:CDS	45.0%
	CAAGCTGATCCCTTGGATTT+CGG	+	chr5_3:35812931-35812950	Msa0809420:CDS	45.0%
	CCGTAGTTTCCGAAATCCAA+GGG	-	chr5_3:35812943-35812962	None:intergenic	45.0%
	CCCTTGGATTTCGGAAACTA+CGG	+	chr5_3:35812940-35812959	Msa0809420:CDS	45.0%
	TACTGCTTCTCCTTTGTCCA+TGG	-	chr5_3:35812983-35813002	None:intergenic	45.0%
	GACAAAGGAGAAGCAGTAGA+AGG	+	chr5_3:35812985-35813004	Msa0809420:CDS	45.0%
	TCAATTGGTCAAGCTGCTCA+AGG	+	chr5_3:35813249-35813268	Msa0809420:CDS	45.0%
!!	AAATAATTTATATAAAATAG+AGG	-	chr5_3:35811899-35811918	None:intergenic	5.0%
!!!	TTTTAAAAAATATAATTTTG+AGG	-	chr5_3:35812059-35812078	None:intergenic	5.0%
	CTCAACTAATCGCGCCGAAA+AGG	+	chr5_3:35810945-35810964	Msa0809420:CDS	50.0%
	CCTCCCACATAGTCACTTGA+AGG	-	chr5_3:35810991-35811010	None:intergenic	50.0%
	CCTTCAAGTGACTATGTGGG+AGG	+	chr5_3:35810988-35811007	Msa0809420:CDS	50.0%
	GTCGGTTATATGGGAACGTC+CGG	+	chr5_3:35811988-35812007	Msa0809420:CDS	50.0%
	GTCCTGTCATGTTTCGAAGC+AGG	+	chr5_3:35812081-35812100	Msa0809420:intron	50.0%
	TCCCTGCTTCGAAACATGAC+AGG	-	chr5_3:35812086-35812105	None:intergenic	50.0%
	CTCTGGCGTATGGAAATCAC+CGG	+	chr5_3:35812299-35812318	Msa0809420:CDS	50.0%
!	CGGTCGAACGCCTTTTTCTT+TGG	+	chr5_3:35812319-35812338	Msa0809420:CDS	50.0%
!!	AAGCGTGTGTTGACTAGACG+AGG	+	chr5_3:35812616-35812635	Msa0809420:intron	50.0%
	GCCGTAGTTTCCGAAATCCA+AGG	-	chr5_3:35812944-35812963	None:intergenic	50.0%
	CGGAAACTACGGCTTTCAGA+TGG	+	chr5_3:35812951-35812970	Msa0809420:CDS	50.0%
	CTTTGCAGGCAGATCACCTT+AGG	+	chr5_3:35813193-35813212	Msa0809420:intron	50.0%
	TCAAGCTGCTCAAGGCTTGT+TGG	+	chr5_3:35813257-35813276	Msa0809420:CDS	50.0%
!!	TGCTCAAGGCTTGTTGGCTA+TGG	+	chr5_3:35813263-35813282	Msa0809420:CDS	50.0%
!!	GCTCAAGGCTTGTTGGCTAT+GGG	+	chr5_3:35813264-35813283	Msa0809420:CDS	50.0%
!!	CTCAAGGCTTGTTGGCTATG+GGG	+	chr5_3:35813265-35813284	Msa0809420:CDS	50.0%
!!	TCAAGGCTTGTTGGCTATGG+GGG	+	chr5_3:35813266-35813285	Msa0809420:CDS	50.0%
	ACGTCAAGCACAGAATCGCG+CGG	+	chr5_3:35811657-35811676	Msa0809420:CDS	55.0%
	CTTTCAGATGGCTGCTGCCA+TGG	+	chr5_3:35812963-35812982	Msa0809420:CDS	55.0%
	ATGGCTGCTGCCATGGACAA+AGG	+	chr5_3:35812970-35812989	Msa0809420:CDS	55.0%
	GCGCGGCTGCTCGAAAATGT+CGG	+	chr5_3:35811674-35811693	Msa0809420:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	35810807	35813624	35810807	ID=Msa0809420;Name=Msa0809420
chr5_3	mRNA	35810807	35813624	35810807	ID=Msa0809420-mRNA-1;Parent=Msa0809420;Name=Msa0809420-mRNA-1;_AED=0.30;_eAED=0.30;_QI=116\|1\|1\|1\|1\|1\|8\|250\|373
chr5_3	exon	35810807	35811093	35810807	ID=Msa0809420-mRNA-1:exon:11249;Parent=Msa0809420-mRNA-1
chr5_3	exon	35811192	35811266	35811192	ID=Msa0809420-mRNA-1:exon:11250;Parent=Msa0809420-mRNA-1
chr5_3	exon	35811649	35811708	35811649	ID=Msa0809420-mRNA-1:exon:11251;Parent=Msa0809420-mRNA-1
chr5_3	exon	35811782	35811859	35811782	ID=Msa0809420-mRNA-1:exon:11252;Parent=Msa0809420-mRNA-1
chr5_3	exon	35811961	35812024	35811961	ID=Msa0809420-mRNA-1:exon:11253;Parent=Msa0809420-mRNA-1
chr5_3	exon	35812103	35812374	35812103	ID=Msa0809420-mRNA-1:exon:11254;Parent=Msa0809420-mRNA-1
chr5_3	exon	35812793	35813020	35812793	ID=Msa0809420-mRNA-1:exon:11255;Parent=Msa0809420-mRNA-1
chr5_3	exon	35813201	35813624	35813201	ID=Msa0809420-mRNA-1:exon:11256;Parent=Msa0809420-mRNA-1
chr5_3	five_prime_UTR	35810807	35810922	35810807	ID=Msa0809420-mRNA-1:five_prime_utr;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35810923	35811093	35810923	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35811192	35811266	35811192	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35811649	35811708	35811649	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35811782	35811859	35811782	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35811961	35812024	35811961	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35812103	35812374	35812103	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35812793	35813020	35812793	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	CDS	35813201	35813374	35813201	ID=Msa0809420-mRNA-1:cds;Parent=Msa0809420-mRNA-1
chr5_3	three_prime_UTR	35813375	35813624	35813375	ID=Msa0809420-mRNA-1:three_prime_utr;Parent=Msa0809420-mRNA-1

Gene Sequence

>Msa0809420

ATGAACTCTTCTTCATCATCAACTCAACTAATCGCGCCGAAAAGGATGAACATGTATGAGCCATTCCTTCAAGTGACTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAAGTAGCATGGAGAACAAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTACTACGACGTCAAGCACAGAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGCTTATGTTCAACAACTGGAAACGAGTAGATTGAAGCTCATGCAGTTGGAATTAGATATCGAGAAAACAAGAAAACAGGGTTTATACAGAAACAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCAACAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACATCTTCATCTACTTGTCGAGAGTAGGTTGAACCAATACTCAAATCTTTTTCAAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATAGGAGGATCTCGTCCATCACAAATTCTAAATATCGTGGTACCGAAACTTGAGAATTTGAATGATCAACAAATTGCTAGCATTAACAACCTGCGTTTATCATCTCAGCAAGCTGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCAATTGGTCAAGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCACCATTTCTACCCTACTCAACACTCAAATTAA

Protein sequence

>Msa0809420

MNSSSSSTQLIAPKRMNMYEPFLQVTMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRNSLLDVGYMGTSGTINSGISLFEIEYGRWIEEQDQQNEELRNALQTNASDIHLHLLVESRLNQYSNLFQMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIASINNLRLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN*